1
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Cheng S, Dong C, Ma Y, Xu X, Zhao Y. Skeletal Transformations of Terpenoid Forskolin Employing an Oxidative Rearrangement Strategy. J Org Chem 2024; 89:5741-5745. [PMID: 38568052 DOI: 10.1021/acs.joc.4c00312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/20/2024]
Abstract
The skeletal transformations of diterpenoid forskolin were achieved by employing an oxidative rearrangement strategy. A library of 36 forskolin analogues with structural diversity was effectively generated. Computational analysis shows that 12 CTD compounds with unique scaffolds and ring systems were produced during the course of this work.
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Affiliation(s)
- Shihao Cheng
- School of Pharmacy, Nantong University, Nantong 226001, China
| | - Chenhu Dong
- School of Pharmacy, Nantong University, Nantong 226001, China
| | - Yujie Ma
- School of Pharmacy, Nantong University, Nantong 226001, China
| | - Xiaoyu Xu
- School of Pharmacy, Nantong University, Nantong 226001, China
| | - Yu Zhao
- School of Pharmacy, Nantong University, Nantong 226001, China
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2
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Zhang X, Ma X, Zhang W. Decarboxylative 1,3-dipolar cycloaddition of amino acids for the synthesis of heterocyclic compounds. Beilstein J Org Chem 2023; 19:1677-1693. [PMID: 38025085 PMCID: PMC10644012 DOI: 10.3762/bjoc.19.123] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Accepted: 10/25/2023] [Indexed: 12/01/2023] Open
Abstract
The [3 + 2] cycloadditions of stabilized azomethine ylides (AMYs) derived from amino esters are well-established. However, the reactions of semi-stabilized AMYs generated from decarboxylative condensation of α-amino acids with arylaldehydes are much less explored. The [3 + 2] adducts of α-amino acids could be used for a second [3 + 2] cycloaddition as well as for other post-condensation modifications. This article highlights our recent work on the development of α-amino acid-based [3 + 2] cycloaddition reactions of N-H-type AMYs in multicomponent, one-pot, and stepwise reactions for the synthesis of diverse heterocycles related to some bioactive compounds and natural products.
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Affiliation(s)
- Xiaofeng Zhang
- Center for Green Chemistry and Department of Chemistry, University of Massachusetts Boston, 100 Morrissey Boulevard, Boston, MA 02125, USA
- Department of Medicinal Chemistry, Cerevel Therapeutics, 222 Jacobs St Suite 200, Cambridge, MA 02141, USA
| | - Xiaoming Ma
- School of Pharmacy, Changzhou University, Changzhou 213164, China
| | - Wei Zhang
- Center for Green Chemistry and Department of Chemistry, University of Massachusetts Boston, 100 Morrissey Boulevard, Boston, MA 02125, USA
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3
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Paulus F, Stein C, Heusel C, Stoffels TJ, Daniliuc CG, Glorius F. Three-Component Photochemical 1,2,5-Trifunctionalizations of Alkenes toward Densely Functionalized Lynchpins. J Am Chem Soc 2023; 145:23814-23823. [PMID: 37852246 DOI: 10.1021/jacs.3c08898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2023]
Abstract
Radical remote 1,n-difunctionalization reactions (n > 2) of alkenes are powerful tools to efficiently introduce functional groups with selected distances into target molecules. Among these reactions, 1,5-difunctionalizations are an important subclass, leading to sought-after scaffolds, but typically suffer from tailored starting materials and strict limitations for the formed functional group in 2-position. Seeking to address these issues and to make radical 1,5-difunctionalizations of alkenes more applicable, we report a novel three-component 1,2,5-trifunctionalization reaction between imine-based bifunctional reagents and two distinct alkenes, driven by visible light energy transfer-catalysis. Key to achieving this selective one-step installation of three different functional groups via the choreographed formation of four bonds was the utilization of a 1,2-boron shift and the rigorous capitalization of radical polarities and stabilities. Thorough mechanistic studies were carried out, and the synthetic utility of the obtained products was demonstrated by various downstream modifications. Notably, in addition to the functionalization of individual functional groups, their interplay gave rise to a unique array of cyclic products.
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Affiliation(s)
- Fritz Paulus
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität Münster, Corrensstraße 36, 48149 Münster, Germany
| | - Colin Stein
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität Münster, Corrensstraße 36, 48149 Münster, Germany
| | - Corinna Heusel
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität Münster, Corrensstraße 36, 48149 Münster, Germany
| | - Tobias J Stoffels
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität Münster, Corrensstraße 36, 48149 Münster, Germany
| | - Constantin G Daniliuc
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität Münster, Corrensstraße 36, 48149 Münster, Germany
| | - Frank Glorius
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität Münster, Corrensstraße 36, 48149 Münster, Germany
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4
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Zhang M, He Y, Li S, Geng Y, Liu X, Yang X. Synthesis of spiropyrans and arylquinones via Ru(II)-catalyzed condition-controlled coupling of 3-aryl-2 H-benzoxazinones with benzoquinones. Chem Commun (Camb) 2023; 59:11704-11707. [PMID: 37700730 DOI: 10.1039/d3cc03395c] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/14/2023]
Abstract
Ru(II)-catalyzed condition-controlled divergent coupling between 3-aryl-2H-benzoxazin-2-ones and benzoquinones has been realized under operationally simple conditions, affording a series of structurally stable spiropyrans and valuable arylquinones. The potential of this method is also demonstrated by scale-up synthesis and derivatization. Additionally, an unprecedented cycloruthenated complex has been identified as a key intermediate.
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Affiliation(s)
- Mengying Zhang
- College of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China.
| | - Yuhao He
- College of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China.
| | - Song Li
- College of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China.
| | - Yuehua Geng
- College of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China.
| | - Xiangyang Liu
- College of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China.
| | - Xifa Yang
- College of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China.
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5
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Caramiello A, Bellucci MC, Cristina G, Castellano C, Meneghetti F, Mori M, Secundo F, Viani F, Sacchetti A, Volonterio A. Synthesis and Conformational Analysis of Hydantoin-Based Universal Peptidomimetics. J Org Chem 2023; 88:10381-10402. [PMID: 36226862 PMCID: PMC10407853 DOI: 10.1021/acs.joc.2c01903] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Indexed: 11/30/2022]
Abstract
The synthesis of a collection of enantiomerically pure, systematically substituted hydantoins as structural privileged universal mimetic scaffolds is presented. It relies on a chemoselective condensation/cyclization domino process between isocyanates of quaternary or unsubstituted α-amino esters and N-alkyl aspartic acid diesters followed by standard hydrolysis/coupling reactions with amines, using liquid-liquid acid/base extraction protocols for the purification of the intermediates. Besides the nature of the α carbon on the isocyanate moiety, either a quaternary carbon or a more flexible methylene group, conformational studies in silico (molecular modeling), in solution (NMR, circular dichroism (CD), Fourier transform infrared (FTIR)), and in solid state (X-ray) showed that the presented hydantoin-based peptidomimetics are able to project their substituents in positions superimposable to the side chains of common protein secondary structures such as α-helix and β-turn, being the open α-helix conformation slightly favorable according to molecular modeling, while the closed β-turn conformation preferred in solution and in solid state.
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Affiliation(s)
- Alessio
M. Caramiello
- Department
of Chemistry, Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, via Mancinelli 7, 20131Milano, Italy
| | - Maria Cristina Bellucci
- Department
of Food, Environmental and Nutritional Sciences, Università degli Studi di Milano, via Celoria 2, 20133Milano, Italy
| | - Gaetano Cristina
- Department
of Chemistry, Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, via Mancinelli 7, 20131Milano, Italy
| | - Carlo Castellano
- Department
of Chemistry, Università degli Studi
di Milano, via Golgi
19, 20133Milano, Italy
| | - Fiorella Meneghetti
- Department
of Pharmaceutical Sciences, Università
degli Studi di Milano, via Mangiagalli 25, 20133Milano, Italy
| | - Matteo Mori
- Department
of Pharmaceutical Sciences, Università
degli Studi di Milano, via Mangiagalli 25, 20133Milano, Italy
| | - Francesco Secundo
- Consiglio
Nazionale delle Ricerche, Istituto di Scienze
e Tecnologie Chimiche “G. Natta” (SCITEC), via Mario Bianco 9, 20131Milan, Italy
| | - Fiorenza Viani
- Consiglio
Nazionale delle Ricerche, Istituto di Scienze
e Tecnologie Chimiche “G. Natta” (SCITEC), via Mario Bianco 9, 20131Milan, Italy
| | - Alessandro Sacchetti
- Department
of Chemistry, Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, via Mancinelli 7, 20131Milano, Italy
| | - Alessandro Volonterio
- Department
of Chemistry, Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, via Mancinelli 7, 20131Milano, Italy
- Consiglio
Nazionale delle Ricerche, Istituto di Scienze
e Tecnologie Chimiche “G. Natta” (SCITEC), via Mario Bianco 9, 20131Milan, Italy
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6
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de Dios SMR, Hass JL, Graham DL, Kumar N, Antony AE, Morton MD, Berkowitz DB. Information-Rich, Dual-Function 13C/ 2H-Isotopic Crosstalk NMR Assay for Human Serine Racemase (hSR) Provides a PLP-Enzyme "Partitioning Fingerprint" and Reveals Disparate Chemotypes for hSR Inhibition. J Am Chem Soc 2023; 145:3158-3174. [PMID: 36696670 PMCID: PMC11103274 DOI: 10.1021/jacs.2c12774] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
The first dual-function assay for human serine racemase (hSR), the only bona fide racemase in human biology, is reported. The hSR racemization function is essential for neuronal signaling, as the product, d-serine (d-Ser), is a potent N-methyl d-aspartate (NMDA) coagonist, important for learning and memory, with dysfunctional d-Ser-signaling being observed in some neuronal disorders. The second hSR function is β-elimination and gives pyruvate; this activity is elevated in colorectal cancer. This new NMR-based assay allows one to monitor both α-proton-exchange chemistry and β-elimination using only the native l-Ser substrate and hSR and is the most sensitive such assay. The assay judiciously employs segregated dual 13C-labeling and 13C/2H crosstalk, exploiting both the splitting and shielding effects of deuterium. The assay is deployed to screen a 1020-compound library and identifies an indolo-chroman-2,4-dione inhibitor family that displays allosteric site binding behavior (noncompetitive inhibition vs l-Ser substrate; competitive inhibition vs adenosine 5'-triphosphate (ATP)). This assay also reveals important mechanistic information for hSR; namely, that H/D exchange is ∼13-fold faster than racemization, implying that K56 protonates the carbanionic intermediate on the si-face much faster than does S84 on the re-face. Moreover, the 13C NMR peak pattern seen is suggestive of internal return, pointing to K56 as the likely enamine-protonating residue for β-elimination. The 13C/2H-isotopic crosstalk assay has also been applied to the enzyme tryptophan synthase and reveals a dramatically different partition ratio in this active site (β-replacement: si-face protonation ∼6:1 vs β-elimination: si-face protonation ∼1:3.6 for hSR), highlighting the value of this approach for fingerprinting the pyridoxal phosphate (PLP) enzyme mechanism.
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Affiliation(s)
| | | | | | - Nivesh Kumar
- Department of Chemistry, University of Nebraska, Lincoln, NE 68588 USA
| | - Aina E. Antony
- Department of Chemistry, University of Nebraska, Lincoln, NE 68588 USA
| | - Martha D. Morton
- Department of Chemistry, University of Nebraska, Lincoln, NE 68588 USA
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7
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Zhang Y, Guo J, Cheng J, Zhang Z, Kang F, Wu X, Chu Q. High-Throughput Screening of Stapled Helical Peptides in Drug Discovery. J Med Chem 2023; 66:95-106. [PMID: 36580278 DOI: 10.1021/acs.jmedchem.2c01541] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Therapeutic peptides have revolutionized treatment for a number of human diseases. In particular, the past two decades have witnessed rapid progress of stapled helical peptides in drug discovery. Stapled helical peptides are chemically modified and constrained in their bioactive α-helical conformation. Compared to unstabilized linear peptides, stapled helical peptides exhibit superior binding affinity and selectivity, enhanced membrane permeability, and improved metabolic stability, presenting exciting promise for targeting otherwise challenging protein-protein interfaces. In this Perspective, we summarize recent applications of high-throughput screening technologies for identification of potent stapled helical peptides with optimized binding properties. We expect to provide a broad reference to accelerate the development of stapled helical peptides as the next generation of therapeutic peptides for various human diseases.
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Affiliation(s)
- Yiwei Zhang
- Department of Medicinal Chemistry, School of Pharmacy, China Pharmaceutical University, Nanjing 211198, China
| | - Jiabei Guo
- Department of Medicinal Chemistry, School of Pharmacy, China Pharmaceutical University, Nanjing 211198, China
| | - Jiongjia Cheng
- Key Laboratory of Advanced Functional Materials of Nanjing, Nanjing Xiaozhuang University, Nanjing 211171, China
| | - Zhenghua Zhang
- Department of Chemistry, School of Science, China Pharmaceutical University, Nanjing 211198, China
| | - Fenghua Kang
- Xiangya School of Pharmaceutical Sciences, Central South University, Changsha 410013, China
| | - Xiaoxing Wu
- Department of Medicinal Chemistry, School of Pharmacy, China Pharmaceutical University, Nanjing 211198, China
| | - Qian Chu
- Department of Medicinal Chemistry, School of Pharmacy, China Pharmaceutical University, Nanjing 211198, China.,Jiangsu Key Laboratory of Drug Design and Optimization, China Pharmaceutical University, Nanjing 210009, China
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8
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Brodzka A, Koszelewski D, Ostaszewski R. Simultaneous Enantiodivergent Synthesis of Diverse Lactones and Lactams via Sequential One-Pot Enzymatic Kinetic Resolution-Ring-Closing Metathesis Reactions. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27227696. [PMID: 36431796 PMCID: PMC9698981 DOI: 10.3390/molecules27227696] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 11/03/2022] [Accepted: 11/07/2022] [Indexed: 11/11/2022]
Abstract
One of the goals of diversity-oriented synthesis is to achieve the structural diversity of obtained compounds. As most biologically active compounds are chiral, it is important to develop enantioselective methods of their synthesis. The application of kinetic resolution in DOS is problematic because of low efficiency (max. 50% yield) and many purification steps. The further derivatization of kinetic resolution products in DOS leads to the formation of a narrow library of compounds of the same stereochemistry. To overcome these limitations, we present a new concept in which the kinetic resolution is combined, the subsequent reaction of which in a one-pot protocol leads to the simultaneous formation of two skeletally and enantiomerically diverse platform molecules for DOS. Their further derivatization can gain access to a double-sized library of products in respect to a classical approach. The validity of our concept was evidenced in enzymatic kinetic resolution followed by a ring-closing metathesis cascade. From racemic carboxylic acid ester, a simultaneous formation of enantiopure lactones and lactams was achieved. These compounds are important building blocks in organic and medicinal chemistry and until now were synthesized in separate procedures.
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9
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Govindaraju S, Tabassum S. Visible Light Mediated Organophotoredox-Catalyzed One-Pot Domino Synthesis of Novel 6,7 Disubstituted 1H-Pyrroles. Top Catal 2022. [DOI: 10.1007/s11244-022-01580-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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10
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Abstract
Polyfunctional building blocks are essential for the implementation of diversity-oriented synthetic strategies, highly demanded in small molecule libraries’ design for modern drug discovery. Acyl(imidoyl)ketenes are highly reactive organic compounds, bearing both oxa- and aza-diene moieties, conjugated symmetrically to the ketene fragment, enabling synthesis of various skeletally diverse heterocycles on their basis. The highlights of reactions utilizing acyl(imidoyl)ketenes are high yields, short reaction time (about several minutes), high selectivity, atom economy, and simple purification procedures, which benefits the drug discovery. The present review focuses on the approaches to thermal generation of acyl(imidoyl)ketenes, patterns of their immediate transformations via intra- and intermolecular reactions, including the reactions of cyclodimerization, in which either symmetric or dissymmetric heterocycles can be formed. Recent advances in investigations on mechanisms, identifications of intermediates, and chemo- and regioselectivity of reactions with participation of acyl(imidoyl)ketenes are also covered.
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11
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Clemons PA, Bittker JA, Wagner FF, Hands A, Dančík V, Schreiber SL, Choudhary A, Wagner BK. The Use of Informer Sets in Screening: Perspectives on an Efficient Strategy to Identify New Probes. SLAS DISCOVERY 2021; 26:855-861. [PMID: 34130532 DOI: 10.1177/24725552211019410] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Small-molecule discovery typically involves large-scale screening campaigns, spanning multiple compound collections. However, such activities can be cost- or time-prohibitive, especially when using complex assay systems, limiting the number of compounds tested. Further, low hit rates can make the process inefficient. Sparse coverage of chemical structure or biological activity space can lead to limited success in a primary screen and represents a missed opportunity by virtue of selecting the "wrong" compounds to test. Thus, the choice of screening collections becomes of paramount importance. In this perspective, we discuss the utility of generating "informer sets" for small-molecule discovery, and how this strategy can be leveraged to prioritize probe candidates. While many researchers may assume that informer sets are focused on particular targets (e.g., kinases) or processes (e.g., autophagy), efforts to assemble informer sets based on historical bioactivity or successful human exposure (e.g., repurposing collections) have shown promise as well. Another method for generating informer sets is based on chemical structure, particularly when the compounds have unknown activities and targets. We describe our efforts to screen an informer set representing a collection of 100,000 small molecules synthesized through diversity-oriented synthesis (DOS). This process enables researchers to identify activity early and more extensively screen only a few chemical scaffolds, rather than the entire collection. This elegant and economic outcome is a goal of the informer set approach. Here, we aim not only to shed light on this process, but also to promote the use of informer sets more widely in small-molecule discovery projects.
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Affiliation(s)
- Paul A Clemons
- Chemical Biology and Therapeutics Science Program, Broad Institute, Cambridge, MA, USA
| | - Joshua A Bittker
- Center for the Development of Therapeutics, Broad Institute, Cambridge, MA, USA.,Vertex Pharmaceuticals, Boston, MA, USA
| | - Florence F Wagner
- Center for the Development of Therapeutics, Broad Institute, Cambridge, MA, USA
| | - Allison Hands
- Center for the Development of Therapeutics, Broad Institute, Cambridge, MA, USA
| | - Vlado Dančík
- Chemical Biology and Therapeutics Science Program, Broad Institute, Cambridge, MA, USA
| | - Stuart L Schreiber
- Chemical Biology and Therapeutics Science Program, Broad Institute, Cambridge, MA, USA
| | - Amit Choudhary
- Chemical Biology and Therapeutics Science Program, Broad Institute, Cambridge, MA, USA
| | - Bridget K Wagner
- Chemical Biology and Therapeutics Science Program, Broad Institute, Cambridge, MA, USA
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12
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Mohamed AM, El-Sayed WA, Ibrahim AA, Abdel-Hafez NA, Ali KAK, Mohamed SF. Recent Trends in the Chemistry of [1,2,4]Triazole[1,5-a]pyrimidines. ORG PREP PROCED INT 2021. [DOI: 10.1080/00304948.2020.1871310] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Ashraf M. Mohamed
- Applied Organic Chemistry Department, National Research Centre, Dokki, Giza, Egypt
| | - Wael A. El-Sayed
- Photochemistry Department, National Research Centre, Dokki, Giza, Egypt
- Chemistry Department, College of Science, Qassim University, Buraydah, Kingdom of Saudi Arabia
| | - Alhussein A. Ibrahim
- Applied Organic Chemistry Department, National Research Centre, Dokki, Giza, Egypt
| | | | - Korany A. K. Ali
- Applied Organic Chemistry Department, National Research Centre, Dokki, Giza, Egypt
- Center of Excellence, Advanced Materials and Nanotechnology Group, National Research Centre, Dokki, Giza, Egypt
| | - Salwa F. Mohamed
- Applied Organic Chemistry Department, National Research Centre, Dokki, Giza, Egypt
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13
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Banerjee M, Panjikar PC, Bhutia ZT, Bhosle AA, Chatterjee A. Micellar nanoreactors for organic transformations with a focus on “dehydration” reactions in water: A decade update. Tetrahedron 2021. [DOI: 10.1016/j.tet.2021.132142] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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14
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Brandão P, Marques C, Pinto E, Pineiro M, Burke AJ. Petasis adducts of tryptanthrin – synthesis, biological activity evaluation and druglikeness assessment. NEW J CHEM 2021. [DOI: 10.1039/d1nj02079j] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The first example of a tryptanthrin-based Petasis multicomponent reaction is reported, with one of the new derivatives showing moderate fungicidal activity.
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Affiliation(s)
- Pedro Brandão
- Department of Chemistry
- University of Coimbra
- CQC
- Coimbra
- Portugal
| | | | - Eugénia Pinto
- Laboratório de Microbiologia
- Departamento de Ciências Biológicas
- Faculdade de Farmácia
- Universidade do Porto
- 4050-313 Porto
| | - Marta Pineiro
- Department of Chemistry
- University of Coimbra
- CQC
- Coimbra
- Portugal
| | - Anthony J. Burke
- LAQV-REQUIMTE
- University of Évora
- Évora
- Portugal
- Department of Chemistry
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15
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Yu Y, Guan M, Zhao YH, Xie W, Zhou Z, Tang Z. Efficient Synthesis of Isoquinoline and Its Derivatives: From
Metal Сatalysts to Catalyst-free Processes in Water. RUSS J GEN CHEM+ 2020. [DOI: 10.1134/s1070363220100266] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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16
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Liu R, Yang S, Chen Z, Kong X, Ding H, Fang X. Lewis-Acid-Catalyzed Asymmetric Alkynylation of Alkynyl 1,2-Diketones: Controllable Formation of 3(2H)-Furanones and α-Hydroxy Ketones. Org Lett 2020; 22:6948-6953. [DOI: 10.1021/acs.orglett.0c02505] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Rui Liu
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, and State Key Laboratory of Structural Chemistry, Center for Excellence in Molecular Synthesis, Fujian Institute of Research on the Structure of Matter, University of Chinese Academy of Sciences, Fuzhou 350100, China
| | - Shuang Yang
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, and State Key Laboratory of Structural Chemistry, Center for Excellence in Molecular Synthesis, Fujian Institute of Research on the Structure of Matter, University of Chinese Academy of Sciences, Fuzhou 350100, China
| | - Zhizhou Chen
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, and State Key Laboratory of Structural Chemistry, Center for Excellence in Molecular Synthesis, Fujian Institute of Research on the Structure of Matter, University of Chinese Academy of Sciences, Fuzhou 350100, China
| | - Xiangwen Kong
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, and State Key Laboratory of Structural Chemistry, Center for Excellence in Molecular Synthesis, Fujian Institute of Research on the Structure of Matter, University of Chinese Academy of Sciences, Fuzhou 350100, China
| | - Houqiang Ding
- The First Affiliated Hospital of Shandong First Medical University, Jinan 250014, China
| | - Xinqiang Fang
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, and State Key Laboratory of Structural Chemistry, Center for Excellence in Molecular Synthesis, Fujian Institute of Research on the Structure of Matter, University of Chinese Academy of Sciences, Fuzhou 350100, China
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17
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Hekal MH, El-Naggar AM, Abu El-Azm FSM, El-Sayed WM. Synthesis of new oxadiazol-phthalazinone derivatives with anti-proliferative activity; molecular docking, pro-apoptotic, and enzyme inhibition profile. RSC Adv 2020; 10:3675-3688. [PMID: 35492649 PMCID: PMC9048702 DOI: 10.1039/c9ra09016a] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2019] [Accepted: 01/15/2020] [Indexed: 12/17/2022] Open
Abstract
Background and aim: The current study reports the synthesis and biological evaluation of two novel series of 4-(5-mercapto-1,3,4-oxadiazol-2-yl)phthalazin-1(2H)-one derivatives. Methods: The synthetic reactions were carried out under both conventional and ultrasonic irradiation conditions. The anti-proliferative activity of the newly synthesized compounds against two human epithelial cell lines; liver (HepG2) and breast (MCF-7) in addition to normal fibroblasts (WI-38) was investigated. In addition to molecular docking studies, the possible mechanism(s) of action were also explored. Results: In general, an improvement in synthetic rates and yields was observed when reactions were carried out under sonication compared with classical conditions. The structures of the products were established based on analytical and spectral data. Derivatives 2e and 7d, in addition to compound 1, had significant and selective anti-proliferative activity against liver and breast cancer cell lines without harming normal fibroblasts. These derivatives arrested the cell cycle progression and/or induced apoptosis. This has been manifested by the elevation in the expression of p53 and caspase 3, down-regulation of cdk1, and a reduction in the concentrations of MAPK and Topo II at submicromolar concentrations. The latter results confirmed the molecular docking study. Conclusions: Compound 1 had the best profile on the gene and protein levels (arresting cell cycle and inducing apoptosis). The ability of compounds 1 and 2e to inhibit both MAPK and Topo II nominates these derivatives as potential candidates for further anticancer and antitumor studies.
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Affiliation(s)
- Mohamed H Hekal
- Department of Chemistry, Faculty of Science, Ain Shams University Abbassia 11566 Cairo Egypt
| | - Abeer M El-Naggar
- Department of Chemistry, Faculty of Science, Ain Shams University Abbassia 11566 Cairo Egypt
| | - Fatma S M Abu El-Azm
- Department of Chemistry, Faculty of Science, Ain Shams University Abbassia 11566 Cairo Egypt
| | - Wael M El-Sayed
- Department of Zoology, Faculty of Science, Ain Shams University Abbassia 11566 Cairo Egypt +202/2684-2123 +202/2482-1633
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18
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Ghorai S, Lee D. Synthesis of Imides, Imidates, Amidines, and Amides by Intercepting the Aryne-Isocyanide Adduct with Weak Nucleophiles. Org Lett 2019; 21:7390-7393. [PMID: 31482701 DOI: 10.1021/acs.orglett.9b02711] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
New aryne-based multicomponent coupling reactions for the formation of functionalized aromatic compounds have been developed. Arynes generated from triynes or tetraynes through the hexadehydro Diels-Alder reaction readily react with isocyanide to generate nitrilium intermediate. Intercepting this nitrilium species with various weak nucleophile including carboxylic acids, alcohols, sulfonamides, or water generated the corresponding imides, imidates, amidines, or amides. The high regioselectivity of these transformations was mainly controlled by the substituents of the arynes.
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Affiliation(s)
- Sourav Ghorai
- Department of Chemistry , University of Illinois at Chicago , 845 West Taylor Street , Chicago , Illinois 60607 , United States
| | - Daesung Lee
- Department of Chemistry , University of Illinois at Chicago , 845 West Taylor Street , Chicago , Illinois 60607 , United States
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19
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Kasatkina S, Stepanova E, Dmitriev M, Mokrushin I, Maslivets A. Divergent synthesis of (quinoxalin-2-yl)-1,3-oxazines and pyrimido[1,6-a]quinoxalines via the cycloaddition reaction of acyl(quinoxalinyl)ketenes. Tetrahedron Lett 2019. [DOI: 10.1016/j.tetlet.2019.151088] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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20
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Affiliation(s)
- Jie Wang
- Shanghai Key Laboratory of New Drug Design, School of PharmacyEast China University of Science and Technology Shanghai 200237 China
| | - Shiliang Li
- Shanghai Key Laboratory of New Drug Design, School of PharmacyEast China University of Science and Technology Shanghai 200237 China
| | - Honglin Li
- Shanghai Key Laboratory of New Drug Design, School of PharmacyEast China University of Science and Technology Shanghai 200237 China
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21
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Leonardi M, Estévez V, Villacampa M, Menéndez JC. Diversity‐Oriented Synthesis of Complex Pyrrole‐Based Architectures from Very Simple Starting Materials. Adv Synth Catal 2019. [DOI: 10.1002/adsc.201900044] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Marco Leonardi
- Unidad de Química Orgánica y Farmacéutica, Departamento de Química en Ciencias Farmacéuticas. Facultad de FarmaciaUniversidad Complutense 28040 Madrid Spain
| | - Verónica Estévez
- Unidad de Química Orgánica y Farmacéutica, Departamento de Química en Ciencias Farmacéuticas. Facultad de FarmaciaUniversidad Complutense 28040 Madrid Spain
| | - Mercedes Villacampa
- Unidad de Química Orgánica y Farmacéutica, Departamento de Química en Ciencias Farmacéuticas. Facultad de FarmaciaUniversidad Complutense 28040 Madrid Spain
| | - J. Carlos Menéndez
- Unidad de Química Orgánica y Farmacéutica, Departamento de Química en Ciencias Farmacéuticas. Facultad de FarmaciaUniversidad Complutense 28040 Madrid Spain
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22
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Zheng S, Yan X, Gu Q, Yang Y, Du Y, Lu Y, Xu J. QBMG: quasi-biogenic molecule generator with deep recurrent neural network. J Cheminform 2019; 11:5. [PMID: 30656426 PMCID: PMC6689867 DOI: 10.1186/s13321-019-0328-9] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2018] [Accepted: 01/09/2019] [Indexed: 12/30/2022] Open
Abstract
Biogenic compounds are important materials for drug discovery and chemical biology. In this work, we report a quasi-biogenic molecule generator (QBMG) to compose virtual quasi-biogenic compound libraries by means of gated recurrent unit recurrent neural networks. The library includes stereo-chemical properties, which are crucial features of natural products. QMBG can reproduce the property distribution of the underlying training set, while being able to generate realistic, novel molecules outside of the training set. Furthermore, these compounds are associated with known bioactivities. A focused compound library based on a given chemotype/scaffold can also be generated by this approach combining transfer learning technology. This approach can be used to generate virtual compound libraries for pharmaceutical lead identification and optimization.![]()
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Affiliation(s)
- Shuangjia Zheng
- Research Center for Drug Discovery, School of Pharmaceutical Sciences, Sun Yat-Sen University, 132 East Circle at University City, Guangzhou, 510006, China
| | - Xin Yan
- Research Center for Drug Discovery, School of Pharmaceutical Sciences, Sun Yat-Sen University, 132 East Circle at University City, Guangzhou, 510006, China.
| | - Qiong Gu
- Research Center for Drug Discovery, School of Pharmaceutical Sciences, Sun Yat-Sen University, 132 East Circle at University City, Guangzhou, 510006, China
| | - Yuedong Yang
- National Supercomputer Center in Guangzhou and School of Data and Computer Science, Sun Yat-Sen University, 132 East Circle at University City, Guangzhou, 510006, China
| | - Yunfei Du
- National Supercomputer Center in Guangzhou and School of Data and Computer Science, Sun Yat-Sen University, 132 East Circle at University City, Guangzhou, 510006, China
| | - Yutong Lu
- National Supercomputer Center in Guangzhou and School of Data and Computer Science, Sun Yat-Sen University, 132 East Circle at University City, Guangzhou, 510006, China
| | - Jun Xu
- Research Center for Drug Discovery, School of Pharmaceutical Sciences, Sun Yat-Sen University, 132 East Circle at University City, Guangzhou, 510006, China. .,School of Computer Science and Technology, Wuyi University, 99 Yingbin Road, Jiangmen, 529020, China.
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23
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Diversity-oriented synthesis of bicyclic fragments containing privileged azines. Bioorg Med Chem Lett 2019; 29:248-251. [DOI: 10.1016/j.bmcl.2018.11.046] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2018] [Revised: 11/19/2018] [Accepted: 11/22/2018] [Indexed: 01/12/2023]
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24
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Affiliation(s)
- Colin Diner
- Centre for Catalysis Research and Innovation (CCRI) and Department of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa K1N 6N5, Canada
| | - Michael G. Organ
- Centre for Catalysis Research and Innovation (CCRI) and Department of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa K1N 6N5, Canada
- Department of Chemistry, York University, 4700 Keele Street, Toronto M3J 1P3, Canada
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25
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Abstract
The concept of repurposing previously approved medications to the treatment of new indications by taking advantage of off-target effects has gained traction in recent years, particularly in areas of medicine that do not offer large profits to pharmaceutical firms. As infectious disease discovery research has declined among large pharmaceutical companies, the potential payoff of repurposing has become attractive. The concept of repurposing previously approved medications to the treatment of new indications by taking advantage of off-target effects has gained traction in recent years, particularly in areas of medicine that do not offer large profits to pharmaceutical firms. As infectious disease discovery research has declined among large pharmaceutical companies, the potential payoff of repurposing has become attractive. From these efforts, the triphenylethylene class of selective estrogen receptor modulators related to tamoxifen has shown activity against a wide range of medically important human pathogens, including bacteria, fungi, parasites, and viruses. Because it has activity against many pathogens affecting people in resource-limited areas of the world, TAM and related drugs may be particularly useful. Here, we review the in vitro, in vivo, and mechanistic studies of the anti-infective activity of tamoxifen, toremifene, clomiphene, and their analogs. We also discuss the pharmacologic properties of this privileged scaffold and its potential utility in treating infectious diseases.
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26
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Silva DG, Emery FDS. Strategies towards expansion of chemical space of natural product-based compounds to enable drug discovery. BRAZ J PHARM SCI 2018. [DOI: 10.1590/s2175-97902018000001004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
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27
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Warghude PK, Dharpure PD, Bhat RG. Cycloaddition of isatin-derived MBH carbonates and 3-methyleneoxindoles to construct diastereoselective cyclopentenyl bis-spirooxindoles and cyclopropyl spirooxindoles: Catalyst controlled [3 + 2] and [2 + 1] annulations. Tetrahedron Lett 2018. [DOI: 10.1016/j.tetlet.2018.10.004] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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28
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Li QZ, Zhang X, Zeng R, Dai QS, Liu Y, Shen XD, Leng HJ, Yang KC, Li JL. Direct Sulfide-Catalyzed Enantioselective Cyclopropanations of Electron-Deficient Dienes and Bromides. Org Lett 2018; 20:3700-3704. [DOI: 10.1021/acs.orglett.8b01537] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Qing-Zhu Li
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of Antibiotics, Chengdu University, Chengdu 610052, China
| | - Xiang Zhang
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of Antibiotics, Chengdu University, Chengdu 610052, China
- Chengdu Institute of Organic Chemistry, Chinese Academy of Sciences, Chengdu 610041, China
| | - Rong Zeng
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of Antibiotics, Chengdu University, Chengdu 610052, China
| | - Qing-Song Dai
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of Antibiotics, Chengdu University, Chengdu 610052, China
| | - Yue Liu
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of Antibiotics, Chengdu University, Chengdu 610052, China
| | - Xu-Dong Shen
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of Antibiotics, Chengdu University, Chengdu 610052, China
| | - Hai-Jun Leng
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of Antibiotics, Chengdu University, Chengdu 610052, China
| | - Kai-Chuan Yang
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of Antibiotics, Chengdu University, Chengdu 610052, China
| | - Jun-Long Li
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of Antibiotics, Chengdu University, Chengdu 610052, China
- Chengdu Institute of Organic Chemistry, Chinese Academy of Sciences, Chengdu 610041, China
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29
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Saini R, Malladi SR, Dharavath N. Diversity-oriented One-pot Synthesis of Novel Imidazo[4′,5′:4,5]benzo[e
][1,4]thiazepinones and Benzo[d
]imidazolyl Thiazolidinones through p
TSA Promoted Cyclization and Evaluation of Antimicrobial and Anti-inflammatory Activities. J Heterocycl Chem 2018. [DOI: 10.1002/jhet.3191] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Ramakrishna Saini
- Department of Chemistry; Kakatiya University; Warangal TS 506 009 India
| | - Srinivas Reddy Malladi
- Department of Pharmaceutical Chemistry; Vaageswari College of Pharmacy; Thimmapur Karimnagar TS 505 481 India
| | - Nagaraju Dharavath
- Department of Chemistry; Telangana University; Nizamabad TS 503 322 India
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30
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Gerry CJ, Schreiber SL. Chemical probes and drug leads from advances in synthetic planning and methodology. Nat Rev Drug Discov 2018; 17:333-352. [PMID: 29651105 PMCID: PMC6707071 DOI: 10.1038/nrd.2018.53] [Citation(s) in RCA: 150] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Screening of small-molecule libraries is a productive method for identifying both chemical probes of disease-related targets and potential starting points for drug discovery. In this article, we focus on strategies such as diversity-oriented synthesis that aim to explore novel areas of chemical space efficiently by populating small-molecule libraries with compounds containing structural features that are typically under-represented in commercially available screening collections. Drawing from more than a decade's worth of examples, we highlight how the design and synthesis of such libraries have been enabled by modern synthetic chemistry, and we illustrate the impact of the resultant chemical probes and drug leads in a wide range of diseases.
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Affiliation(s)
- Christopher J Gerry
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA
- The Broad Institute of Harvard & MIT, Cambridge, MA, USA
| | - Stuart L Schreiber
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA
- The Broad Institute of Harvard & MIT, Cambridge, MA, USA
- Howard Hughes Medical Institute, Cambridge, MA, USA
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31
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Ren HX, Peng L, Song XJ, Liao LG, Zou Y, Tian F, Wang LX. Effective and diastereoselective preparation of dispiro[cyclopent-3′-ene]bisoxindoles via novel [3 + 2] annulation of isoindigos and MBH carbonates. Org Biomol Chem 2018; 16:1297-1304. [DOI: 10.1039/c7ob03009f] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Efficient, one-step preparation of highly steric dispiro[cyclopent-3′-ene]bisoxindoles with two all-carbon quaternary spirocenters and three adjacent cycles in excellent yields and diastereoselectivities under mild conditions.
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Affiliation(s)
- Hong-Xia Ren
- Key Laboratory of Asymmetric Synthesis & Chirotechnology of Sichuan Province
- Chengdu Institute of Organic Chemistry
- Chinese Academy of Sciences
- Chengdu 610041
- P.R. China
| | - Lin Peng
- Key Laboratory of Asymmetric Synthesis & Chirotechnology of Sichuan Province
- Chengdu Institute of Organic Chemistry
- Chinese Academy of Sciences
- Chengdu 610041
- P.R. China
| | - Xiang-Jia Song
- Key Laboratory of Asymmetric Synthesis & Chirotechnology of Sichuan Province
- Chengdu Institute of Organic Chemistry
- Chinese Academy of Sciences
- Chengdu 610041
- P.R. China
| | - Li-Guo Liao
- Key Laboratory of Asymmetric Synthesis & Chirotechnology of Sichuan Province
- Chengdu Institute of Organic Chemistry
- Chinese Academy of Sciences
- Chengdu 610041
- P.R. China
| | - Ying Zou
- Key Laboratory of Asymmetric Synthesis & Chirotechnology of Sichuan Province
- Chengdu Institute of Organic Chemistry
- Chinese Academy of Sciences
- Chengdu 610041
- P.R. China
| | - Fang Tian
- Key Laboratory of Asymmetric Synthesis & Chirotechnology of Sichuan Province
- Chengdu Institute of Organic Chemistry
- Chinese Academy of Sciences
- Chengdu 610041
- P.R. China
| | - Li-Xin Wang
- Key Laboratory of Asymmetric Synthesis & Chirotechnology of Sichuan Province
- Chengdu Institute of Organic Chemistry
- Chinese Academy of Sciences
- Chengdu 610041
- P.R. China
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32
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Halder J, Das D, Nanda S. A distinctive transformation based diversity oriented synthesis of small ring carbocycles and heterocycles from biocatalytically derived enantiopure α-substituted-β-hydroxyesters. Org Biomol Chem 2018; 16:2549-2575. [DOI: 10.1039/c8ob00233a] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
A series of structurally novel small ring carbocyclic and heterocyclic molecules were accessed in an enantiopure fashion.
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Affiliation(s)
- Joydev Halder
- Department of Chemistry
- Indian Institute of Technology Kharagpur
- Kharagpur
- India
| | - Debabrata Das
- Department of Chemistry
- Indian Institute of Technology Kharagpur
- Kharagpur
- India
| | - Samik Nanda
- Department of Chemistry
- Indian Institute of Technology Kharagpur
- Kharagpur
- India
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33
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Yu YJ, Zhang FL, Cheng J, Hei JH, Deng WT, Wang YF. Lewis Base–Boryl Radicals Enabled the Desulfurizative Reduction and Annulation of Thioamides. Org Lett 2017; 20:24-27. [DOI: 10.1021/acs.orglett.7b03201] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- You-Jie Yu
- Hefei National Laboratory
for Physical Sciences at the Microscale and Department of Chemistry, University of Science and Technology of China, 96 Jinzhai Road, Hefei, Anhui 230026, China
| | - Feng-Lian Zhang
- Hefei National Laboratory
for Physical Sciences at the Microscale and Department of Chemistry, University of Science and Technology of China, 96 Jinzhai Road, Hefei, Anhui 230026, China
| | - Jie Cheng
- Hefei National Laboratory
for Physical Sciences at the Microscale and Department of Chemistry, University of Science and Technology of China, 96 Jinzhai Road, Hefei, Anhui 230026, China
| | - Jing-Hao Hei
- Hefei National Laboratory
for Physical Sciences at the Microscale and Department of Chemistry, University of Science and Technology of China, 96 Jinzhai Road, Hefei, Anhui 230026, China
| | - Wei-Ting Deng
- Hefei National Laboratory
for Physical Sciences at the Microscale and Department of Chemistry, University of Science and Technology of China, 96 Jinzhai Road, Hefei, Anhui 230026, China
| | - Yi-Feng Wang
- Hefei National Laboratory
for Physical Sciences at the Microscale and Department of Chemistry, University of Science and Technology of China, 96 Jinzhai Road, Hefei, Anhui 230026, China
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34
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Lepikhina A, Dar’in D, Bakulina O, Chupakhin E, Krasavin M. Skeletal Diversity in Combinatorial Fashion: A New Format for the Castagnoli-Cushman Reaction. ACS COMBINATORIAL SCIENCE 2017; 19:702-707. [PMID: 29019643 DOI: 10.1021/acscombsci.7b00118] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
A new format for the Castagnoli-Cushman reaction of structurally diverse dicarboxylic acids, amines, and aldehydes in the presence of acetic anhydride as dehydrating agent is described. The reaction is distinctly amenable to parallel format: the combinatorial array of 180 reactions delivered 157 products of >85% purity without chromatographic purification (of this number, 143 compounds had >94% purity). The new method offers a convenient preparation of the skeletally and peripherally diverse, lead- and druglike γ- and δ-lactam carboxylic acids with high diastereoselectivity in combinatorial fashion.
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Affiliation(s)
- Anastasia Lepikhina
- Saint Petersburg State University, Saint
Petersburg, 199034 Russian Federation
| | - Dmitry Dar’in
- Saint Petersburg State University, Saint
Petersburg, 199034 Russian Federation
| | - Olga Bakulina
- Saint Petersburg State University, Saint
Petersburg, 199034 Russian Federation
| | - Evgeny Chupakhin
- Immanuel Kant Baltic Federal University, Kaliningrad, 236016 Russian Federation
| | - Mikhail Krasavin
- Saint Petersburg State University, Saint
Petersburg, 199034 Russian Federation
- Immanuel Kant Baltic Federal University, Kaliningrad, 236016 Russian Federation
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35
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Kim S, Kim H, Um K, Lee PH. Synthesis of Azepinoindoles via Rhodium-Catalyzed Formal Aza-[4 + 3] Cycloaddition Reaction of 3-Diazoindolin-2-imines with 1,3-Dienes in One-Pot. J Org Chem 2017; 82:9808-9815. [DOI: 10.1021/acs.joc.7b01150] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Sanghyuck Kim
- Department of Chemistry, Kangwon National University, Chuncheon 24341, Republic of Korea
| | - Hyunseok Kim
- Department of Chemistry, Kangwon National University, Chuncheon 24341, Republic of Korea
| | - Kyusik Um
- Department of Chemistry, Kangwon National University, Chuncheon 24341, Republic of Korea
| | - Phil Ho Lee
- Department of Chemistry, Kangwon National University, Chuncheon 24341, Republic of Korea
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36
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Protein epitope mimetic macrocycles as biopharmaceuticals. Curr Opin Chem Biol 2017; 38:45-51. [DOI: 10.1016/j.cbpa.2017.02.004] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2016] [Revised: 02/02/2017] [Accepted: 02/06/2017] [Indexed: 01/13/2023]
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37
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Ramakrishna KKG, Thakur RK, Pasam VR, Pandey J, Mahar R, Shukla SK, Tamrakar AK, Tripathi RP. Synthesis of novel glycosyl-1,2,3-1H-triazolyl methyl quinazolin-4(3H)-ones and their effect on GLUT4 translocation. Tetrahedron 2017. [DOI: 10.1016/j.tet.2016.11.074] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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38
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Bansode AH, Chimala P, Patil NT. Catalytic Branching Cascades in Diversity Oriented Synthesis. ChemCatChem 2016. [DOI: 10.1002/cctc.201600766] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Avinash H. Bansode
- Division of Organic Chemistry; CSIR-National Chemical Laboratory; Dr. Homi Bhabha Road Pune - 411 008 India
| | - Prathyusha Chimala
- Division of Organic Chemistry; CSIR-National Chemical Laboratory; Dr. Homi Bhabha Road Pune - 411 008 India
| | - Nitin T. Patil
- Division of Organic Chemistry; CSIR-National Chemical Laboratory; Dr. Homi Bhabha Road Pune - 411 008 India
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39
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Sawant RT, Stevens MY, Sköld C, Odell LR. Microwave-Assisted Branching Cascades: A Route to Diverse 3,4-Dihydroquinazolinone-Embedded Polyheterocyclic Scaffolds. Org Lett 2016; 18:5392-5395. [DOI: 10.1021/acs.orglett.6b02774] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Rajiv T. Sawant
- Organic
Pharmaceutical Chemistry,
Department of Medicinal Chemistry, Uppsala Biomedical Center, Uppsala University, P.O.
Box 574, SE-751 23 Uppsala, Sweden
| | - Marc Y. Stevens
- Organic
Pharmaceutical Chemistry,
Department of Medicinal Chemistry, Uppsala Biomedical Center, Uppsala University, P.O.
Box 574, SE-751 23 Uppsala, Sweden
| | - Christian Sköld
- Organic
Pharmaceutical Chemistry,
Department of Medicinal Chemistry, Uppsala Biomedical Center, Uppsala University, P.O.
Box 574, SE-751 23 Uppsala, Sweden
| | - Luke R. Odell
- Organic
Pharmaceutical Chemistry,
Department of Medicinal Chemistry, Uppsala Biomedical Center, Uppsala University, P.O.
Box 574, SE-751 23 Uppsala, Sweden
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40
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Wang Y, Wach JY, Sheehan P, Zhong C, Zhan C, Harris R, Almo SC, Bishop J, Haggarty SJ, Ramek A, Berry KN, O’Herin C, Koehler AN, Hung AW, Young DW. Diversity-Oriented Synthesis as a Strategy for Fragment Evolution against GSK3β. ACS Med Chem Lett 2016; 7:852-6. [PMID: 27660690 DOI: 10.1021/acsmedchemlett.6b00230] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2016] [Accepted: 07/14/2016] [Indexed: 11/30/2022] Open
Abstract
Traditional fragment-based drug discovery (FBDD) relies heavily on structural analysis of the hits bound to their targets. Herein, we present a complementary approach based on diversity-oriented synthesis (DOS). A DOS-based fragment collection was able to produce initial hit compounds against the target GSK3β, allow the systematic synthesis of related fragment analogues to explore fragment-level structure-activity relationship, and finally lead to the synthesis of a more potent compound.
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Affiliation(s)
- Yikai Wang
- Chemical
Biology Program, The Broad Institute of Harvard and MIT, 415
Main Street, Cambridge, Massachusetts 02142, United States
| | - Jean-Yves Wach
- Chemical
Biology Program, The Broad Institute of Harvard and MIT, 415
Main Street, Cambridge, Massachusetts 02142, United States
| | - Patrick Sheehan
- Chemical
Biology Program, The Broad Institute of Harvard and MIT, 415
Main Street, Cambridge, Massachusetts 02142, United States
| | - Cheng Zhong
- Chemical
Biology Program, The Broad Institute of Harvard and MIT, 415
Main Street, Cambridge, Massachusetts 02142, United States
| | - Chenyang Zhan
- Department
of Biochemistry, Albert Einstein College of Medicine, 1300 Morris
Park Avenue, Bronx, New York 10461, United States
| | - Richard Harris
- Department
of Biochemistry, Albert Einstein College of Medicine, 1300 Morris
Park Avenue, Bronx, New York 10461, United States
| | - Steven C. Almo
- Department
of Biochemistry, Albert Einstein College of Medicine, 1300 Morris
Park Avenue, Bronx, New York 10461, United States
| | - Joshua Bishop
- Chemical
Biology Program, The Broad Institute of Harvard and MIT, 415
Main Street, Cambridge, Massachusetts 02142, United States
- Department of Neurology & Psychiatry, Harvard Medical School and Massachusetts General Hospital, 185 Cambridge Street, Boston, Massachusetts 02114, United States
| | - Stephen J. Haggarty
- Chemical
Biology Program, The Broad Institute of Harvard and MIT, 415
Main Street, Cambridge, Massachusetts 02142, United States
- Department of Neurology & Psychiatry, Harvard Medical School and Massachusetts General Hospital, 185 Cambridge Street, Boston, Massachusetts 02114, United States
| | - Alexander Ramek
- Chemical
Biology Program, The Broad Institute of Harvard and MIT, 415
Main Street, Cambridge, Massachusetts 02142, United States
| | - Kayla N. Berry
- Chemical
Biology Program, The Broad Institute of Harvard and MIT, 415
Main Street, Cambridge, Massachusetts 02142, United States
| | - Conor O’Herin
- Chemical
Biology Program, The Broad Institute of Harvard and MIT, 415
Main Street, Cambridge, Massachusetts 02142, United States
| | - Angela N. Koehler
- Chemical
Biology Program, The Broad Institute of Harvard and MIT, 415
Main Street, Cambridge, Massachusetts 02142, United States
| | - Alvin W. Hung
- Chemical
Biology Program, The Broad Institute of Harvard and MIT, 415
Main Street, Cambridge, Massachusetts 02142, United States
| | - Damian W. Young
- Chemical
Biology Program, The Broad Institute of Harvard and MIT, 415
Main Street, Cambridge, Massachusetts 02142, United States
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41
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Atwater B, Chandrasoma N, Mitchell D, Rodriguez MJ, Organ MG. Pd-PEPPSI-IHeptCl
: A General-Purpose, Highly Reactive Catalyst for the Selective Coupling of Secondary Alkyl Organozincs. Chemistry 2016; 22:14531-4. [DOI: 10.1002/chem.201603603] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2016] [Indexed: 01/31/2023]
Affiliation(s)
- Bruce Atwater
- Department of Chemistry; York University; 4700 Keele Street Toronto M3J1P3 Ontario Canada
| | - Nalin Chandrasoma
- Department of Chemistry; York University; 4700 Keele Street Toronto M3J1P3 Ontario Canada
| | | | | | - Michael G. Organ
- Department of Chemistry; York University; 4700 Keele Street Toronto M3J1P3 Ontario Canada
- Centre for Catalysis Research and Innovation (CCRI) and Department of Chemistry; University of Ottawa; Ottawa Ontario Canada
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42
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Synthesis of diverse catechin congeners via diastereoselective intramolecular epoxy-arene cyclization. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.06.059] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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43
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Enantiopure Trisubstituted Tetrahydrofurans with Appendage Diversity: Vinyl Sulfone- and Vinyl Sulfoxide-Modified Furans Derived from Carbohydrates as Synthons for Diversity Oriented Synthesis. Molecules 2016; 21:molecules21060690. [PMID: 27240328 PMCID: PMC6274046 DOI: 10.3390/molecules21060690] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2016] [Revised: 05/12/2016] [Accepted: 05/19/2016] [Indexed: 11/17/2022] Open
Abstract
Enantiomerically pure 2-substituted-2,5-dihydro-3-(aryl) sulfonyl/sulfinyl furans have been prepared from the easily accessible carbohydrate derivatives. The orientation of the substituents attached at the C-2 position of furans is sufficient to control the diastereoselectivity of the addition of various nucleophiles to the vinyl sulfone/sulfoxide-modified tetrahydrofurans, irrespective of the size of the group. The orientation of the substituents at the C-2 center also suppresses the influence of sulfoxides on the diastereoselectivity of the addition of various nucleophiles. The strategy leads to the creation of appendage diversity, affording a plethora of enantiomerically pure trisubstituted furanics for the first time.
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44
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Singh G, Aubé J. Synthesis of cyclic 1,3-diols as scaffolds for spatially directed libraries. Org Biomol Chem 2016; 14:4299-303. [PMID: 27087108 PMCID: PMC4959890 DOI: 10.1039/c6ob00598e] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A useful design element in small molecule libraries is spatial diversity, in which binding moieties are systematically directed toward different regions of three-dimensional space. One way of achieving this is through the use of conformationally diverse scaffolds onto which various binding moieties can be placed. Such scaffolds can represent synthetic challenges of their own. In this paper, we describe a new route to chiral, cyclic 1,3-diol building blocks that features silylated dithianes as relay linchpins. These diols are subsequently used for the construction of a 24-compound pilot library bearing two amino acid residues.
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Affiliation(s)
- Gurpreet Singh
- The University of Kansas Chemical Methodologies and Library Development Center, 2034 Becker Drive, Del Shankel Structural Biology Center, Lawrence, Kansas 66047, United States.
| | - Jeffrey Aubé
- The University of Kansas Chemical Methodologies and Library Development Center, 2034 Becker Drive, Del Shankel Structural Biology Center, Lawrence, Kansas 66047, United States.
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45
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Newman DJ, Cragg GM. Natural Products as Sources of New Drugs from 1981 to 2014. JOURNAL OF NATURAL PRODUCTS 2016; 79:629-61. [PMID: 26852623 DOI: 10.1021/acs.jnatprod.5b01055] [Citation(s) in RCA: 3679] [Impact Index Per Article: 459.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
This contribution is a completely updated and expanded version of the four prior analogous reviews that were published in this journal in 1997, 2003, 2007, and 2012. In the case of all approved therapeutic agents, the time frame has been extended to cover the 34 years from January 1, 1981, to December 31, 2014, for all diseases worldwide, and from 1950 (earliest so far identified) to December 2014 for all approved antitumor drugs worldwide. As mentioned in the 2012 review, we have continued to utilize our secondary subdivision of a "natural product mimic", or "NM", to join the original primary divisions and the designation "natural product botanical", or "NB", to cover those botanical "defined mixtures" now recognized as drug entities by the U.S. FDA (and similar organizations). From the data presented in this review, the utilization of natural products and/or their novel structures, in order to discover and develop the final drug entity, is still alive and well. For example, in the area of cancer, over the time frame from around the 1940s to the end of 2014, of the 175 small molecules approved, 131, or 75%, are other than "S" (synthetic), with 85, or 49%, actually being either natural products or directly derived therefrom. In other areas, the influence of natural product structures is quite marked, with, as expected from prior information, the anti-infective area being dependent on natural products and their structures. We wish to draw the attention of readers to the rapidly evolving recognition that a significant number of natural product drugs/leads are actually produced by microbes and/or microbial interactions with the "host from whence it was isolated", and therefore it is considered that this area of natural product research should be expanded significantly.
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Affiliation(s)
- David J Newman
- NIH Special Volunteer, Wayne, Pennsylvania 19087, United States
| | - Gordon M Cragg
- NIH Special Volunteer, Bethesda, Maryland 20814, United States
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46
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Martin≠ MC, Shenje≠ R, France S. The Catalytic, Formal Homo‐Nazarov Cyclization as a Template for Diversity‐Oriented Synthesis. Isr J Chem 2016. [DOI: 10.1002/ijch.201500099] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- M. Cynthia Martin≠
- School of Chemistry and Biochemistry Georgia Institute of Technology 901 Atlantic Drive Atlanta Georgia 30332 USA
| | - Raynold Shenje≠
- School of Chemistry and Biochemistry Georgia Institute of Technology 901 Atlantic Drive Atlanta Georgia 30332 USA
| | - Stefan France
- School of Chemistry and Biochemistry Georgia Institute of Technology 901 Atlantic Drive Atlanta Georgia 30332 USA
- Petit Institute for Bioengineering and Bioscience Georgia Institute of Technology 315 Ferst Drive Atlanta Georgia 30332 USA
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47
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Vishwanath M, Sivamuthuraman K, Kesavan V. An efficient construction of N,N-bicyclic pyrazolidinones comprising enaminonitriles via asymmetric [3+2] cycloaddition. Chem Commun (Camb) 2016; 52:12314-12317. [DOI: 10.1039/c6cc05304a] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
The first thiourea catalysed asymmetric [3+2] cycloaddition reaction between azomethine imines and malanonitriles was devoloped.
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Affiliation(s)
- Manjunatha Vishwanath
- Chemical Biology Laboratory
- Department of Biotechnology
- Bhupat and Jyoti Mehta School of Biosciences Building
- Indian Institute of Technology Madras
- Chennai-600036
| | - Koilpitchai Sivamuthuraman
- Chemical Biology Laboratory
- Department of Biotechnology
- Bhupat and Jyoti Mehta School of Biosciences Building
- Indian Institute of Technology Madras
- Chennai-600036
| | - Venkitasamy Kesavan
- Chemical Biology Laboratory
- Department of Biotechnology
- Bhupat and Jyoti Mehta School of Biosciences Building
- Indian Institute of Technology Madras
- Chennai-600036
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48
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Peng X, Kaga A, Hirao H, Chiba S. Hydroamination of alkenyl N-arylhydrazones mediated by t-BuOK for the synthesis of nitrogen heterocycles. Org Chem Front 2016. [DOI: 10.1039/c6qo00053c] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The t-BuOK-mediated reactions of γ,δ-alkenyl hydrazones enabled intramolecular hydroamination with the outer nitrogen, affording tetrahydropyridazine derivatives.
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Affiliation(s)
- Xingao Peng
- Division of Chemistry and Biological Chemistry
- School of Physical and Mathematical Sciences
- Nanyang Technological University
- Singapore 637371
- Singapore
| | - Atsushi Kaga
- Division of Chemistry and Biological Chemistry
- School of Physical and Mathematical Sciences
- Nanyang Technological University
- Singapore 637371
- Singapore
| | - Hajime Hirao
- Division of Chemistry and Biological Chemistry
- School of Physical and Mathematical Sciences
- Nanyang Technological University
- Singapore 637371
- Singapore
| | - Shunsuke Chiba
- Division of Chemistry and Biological Chemistry
- School of Physical and Mathematical Sciences
- Nanyang Technological University
- Singapore 637371
- Singapore
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49
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Li C, Zhang F. Single step incorporation of isatin to enaminone: a recyclable catalyst towards assembly of diverse four ring fused pyrrolo[2,3,4-kl]acridin-1-ones. RSC Adv 2016. [DOI: 10.1039/c6ra18048e] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Single step synthesis of four ring fused pyrrolo[2,3,4-kl]acridin-1-ones using recoverable sulfonated carbonaceous material as heterogeneous catalyst.
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Affiliation(s)
- Chunmei Li
- School of Chemistry and Chemical Engineering
- Zhejiang Key Laboratory of Alternative Technologies for Fine Chemicals Process
- Shaoxing University
- Shaoxing
- China
| | - Furen Zhang
- School of Chemistry and Chemical Engineering
- Zhejiang Key Laboratory of Alternative Technologies for Fine Chemicals Process
- Shaoxing University
- Shaoxing
- China
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50
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Ingold M, Dapueto R, Lopez GV, Porcal W. Una reacción multicomponente verde en el laboratorio de química orgánica. ACTA ACUST UNITED AC 2016. [DOI: 10.1016/j.eq.2015.09.008] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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