The shell organic matrix of the crossed lamellar queen conch shell (Strombus gigas)

Stable isotopes in the shell organic matrix for (paleo)environmental reconstructions

Stable isotope ratios of mollusc shell carbonates have long been used to reconstruct past environmental conditions. Although shells also contain organics, they are seldom used in (paleo)climatic studies. Here, we extract the acid-soluble and insoluble fractions of the organic matrix of modern Mytilus galloprovincialis shells from three sites along a coast-to-upper-estuary environmental gradient to measure their hydrogen (δ2H) and oxygen (δ18O) isotope compositions. Both organic fractions showed isotopic signatures significantly different from those of carbonate and water at each site, indicating the involvement of different fractionation mechanisms. The soluble fraction showed gradual differences in isotope values along the gradient, while the insoluble fraction showed δ2H-δ18O correlation regressions subparallel to the Global and Local Meteoric Water Lines. These results showed the great potential of the shell organic matrix stable isotopes as possible (paleo)environmental proxies, stimulating further research to better define the fractionation mechanisms involved.

Characterization of the cross-lamellar structure of Olivancillaria urceus (Gastropoda: Olividae) and its dissolution pattern

In this work, we sought to characterize the cross-lamellar microstructure of the gastropod Olivancillaria urceus (Röding, 1798) and its profile after immersion in acid medium. For crystallographic analysis, segments of the valve were removed and crushed. The powder obtained was analyzed using Fourier Transform Infrared Spectroscopy with Attenuated Total Reflectance (FTIR-ATR) and X-ray Diffractometry (XRD) techniques. For microstructural analysis, eight sections were taken from the shell using a rotary saw. The face of interest of each section was polished with Saint Gobain silicon carbide abrasive powder with mesh sizes of 320, 500, 600, and 1000. The eight sections were divided into four groups of two samples. Three groups were left in 4 % glacial acetic acid solution diluted in water for intervals of 20, 40, and 60 min, respectively, and the control group was not degraded. All wafers were then analyzed in Scanning Electron Microscopy to ascertain the microstructure. The angle and thickness of the layers were determined by Image J software. As a result of the FTIR-ATR technique, a transmittance spectrum was obtained whose valleys represent the vibrational modes of the carbonate ion. The diffractogram peaks and their respective Miller indices, are characteristic of the aragonite crystallographic structure and a small fraction of calcite. The micrographs obtained exposed 3 layers of cross-lamellar microstructure, however, the third and innermost layer showed discontinuity. The angle and average thickness were (105 ± 2)° and (727 ± 5)µm for the outermost layer and (116 ± 3)° and (668 ± 6)µm for the middle layer. The tablets immersed in acid medium showed loss of orientation of the calcium carbonate grains after 40 min and 60 min. Thus, the O. urceus shell exhibits orthorhombic calcium carbonate crystallography. Three layers of cross-lamellar microstructure were identified, as well as the configuration of the structure after contact with corrosive media. These results contribute to the characterization of natural materials and serve as a basis for analysis of the preservation potential in the fossil record.

Distinctive Impact of Heat Treatment on the Mechanical Behavior of Nacreous and Crossed-Lamellar Structures in Biological Shells: Critical Role of Organic Matrix

As biological ceramic composites, mollusk shells exhibit an excellent strength-toughness combination that should be dependent on aragonite/organic matrix interfaces. The mechanical properties and fracture mechanisms of the nacreous structure in the Cristaria plicata (C. plicata) shell and crossed-lamellar structures in the Cymbiola nobilis (C. nobilis) shell were investigated, focusing on the critical role of the organic matrix/aragonite interface bonding that can be adjusted by heat treatments. It is found that heat treatments have a negative impact on the fracture behavior of the nacreous structure in the C. plicata shell, and both the bending and shear properties decrease with increasing heat-treatment temperature because of the loss of water and organic matrix. In contrast, for the crossed-lamellar structure in C. nobilis shell, the water loss in heat treatment slightly decreases its bending properties. When the organic matrix is melted after an appropriate heat treatment at 300°C for 15 min, its bending properties can be greatly enhanced; in this case, remarkable toughening mechanisms involving crack deflection and the fiber pull-out are exhibited, although the interfacial bonding strength reduces. Therefore, an appropriate heat treatment would bring about a positive impact on the fracture behavior of crossed-lamellar structure in the C. nobilis shell. The major research findings have provided an important inspiration that the inducement of moderately weak interfaces rather than all strong interfaces might enhance the comprehensive mechanical properties of fiber-reinforced ceramic composites.

Organic biopolymers of venus clams: Collagen-related matrix in the bivalve shells with crossed-lamellar ultrastructure

BACKGROUND

Biochemical studies and spectroscopic techniques have shown that chitin-silk fibroins are common in nacroprismatic bivalve shells. However, the nature of organic biopolymers in the less well studied shell architectures, such as crossed lamellar shells, remain unknown. Here, two venus shells, Callista disrupta and Callista kingii, with crossed lamellar ultrastructure have been studied.

METHODS

We employed thermal gravimetric analysis, optical-, confocal- and scanning electron-microscopes, gel-sodium dodecyl sulfate (gel-SDS), FTIR, ultra-performance liquid chromatography and high-performance anion-exchange chromatography system with pulsed amperometric detection to analyse organic macromolecules in the shells.

RESULTS

Thermal analysis showed a low concentration of organic macromolecules in C. disrupta (1.38 wt%) and in C. kingii (1.71 wt%). A combination of biochemical protocols, including Calcofluor White staining and FTIR spectroscopic assessment, indicate that amino-polysaccharide chitin together with proteins, are present in the organic scaffolding of the shells. Scanning electron microscope of insoluble acid biopolymer extracts as well as FTIR technique show that the hierarchical structural organizations of organic biopolymers consist collagen-related matrix. Our histochemical fixing and staining techniques reveal many discrete proteins and glycoproteins from soluble organic macromolecules on the gel-SDS. We show here 'singlet' and 'doublet' glycosaminoglycan bands that are far above 260 kDa.

GENERAL SIGNIFICANCE/CONCLUSIONS

The presence of collagen matrix in Callista shells shows promise for the new source of biomaterials. Most importantly, the structural organization of the proteinaceous motif is predominantly helical structures and not silk-fibroin unlike in nacreous bivalve shells.

Review: Post-translational modifications of marine shell matrix proteins

Shell matrix proteins (SMPs) are key components for the Mollusk shell biomineralization. SMPs function has been hypothesized in several proteins by bioinformatics analysis, and through in vitro crystallization assays. However, studies of the post-translational modifications (PTMs) of SMPs, which contribute to their structure and the function, are limited. This review provides the current status of the SMPs with the most common PTMs described (glycosylation, phosphorylation, and disulfide bond formation) and their role in shell biomineralization. Also, recent studies based on recombinant production of SMPs are discussed. Finally, recommendations for the study of SMPs and their PTMs are provided. The review showed that PTMs are widely distributed in SMPs, and their presence on SMPs may contribute to the modulation of their activity in some SMPs, contributing to the crystal growth formation and differentiation through different mechanisms, however, in a few cases the lack of the PTMs do not alter their inherent function.

Sawtooth patterns in flexural force curves of structural biological materials are not signatures of toughness enhancement: Part I

Layered architectures are prevalent in tough biological composites, such as nacre and bone. Another example of a biological composite with layered architecture is the skeletal elements-called spicules-from the sponge Euplectella aspergillum. Based on the similarities between the architectures, it has been speculated that the spicules are also tough. Such speculation is in part supported by a sequence of sudden force drops (sawtooth patterns) that are observed in the spicules' force-displacement curves from flexural tests, which are thought to reflect the operation of fracture toughness enhancing mechanisms. In this study, we performed three-point bending tests on the spicules, which also yielded the aforementioned sawtooth patterns. However, based on the analysis of the micrographs obtained during the tests, we found that the sawtooth patterns were in fact a consequence of slip events in the flexural tests. This is put into perspective by our recent study, in which we showed that the spicules' layered architecture contributes minimally to their toughness, and that the toughness enhancement in them is meager in comparison to what is observed in bone and nacre [Monn MA, Vijaykumar K, Kochiyama S, Kesari H (2020): Nat Commun 11:373]. Our past and current results underline the importance of inferring a material's fracture toughness through direct measurements, rather than relying on visual similarities in architectures or force-displacement curve patterns. Our results also suggest that since the spicules do not possess remarkable toughness, re-examining the mechanical function of the spicule's intricate architecture could lead to the discovery of new engineering design principles.

Natural arrangement of fiber-like aragonites and its impact on mechanical behavior of mollusk shells: A review

During billions of years of evolution, creatures in nature have possessed nearly perfect structures and functions for survival. Multiscale structures in biological materials over several length scales play a pivotal role in achieving structural and functional integrity. Fiber, as a common principal structural element in nature, can be easily constructed in different ways, thus resulting in various natural structures. In this review, we summarized the decades of investigations on a typical biological structure constructed by fiber aragonites in mollusk shells. Crossed-lamellar structure, as one of the most widespread structures in mollusk shells, reconciles the strength-toughness trade-off dilemma successfully due to the presence of highly-hierarchical architectures. This distinctive structure includes several orders of sub-lamellae, and the different order lamellae present a cross-ply feature in one macro crossed-lamellar layer. When a mollusk shell has more than one macro-layer, the crossed-lamellar structure exhibits various forms of architectures including 0°/90°, 0°/90°/0° typical-sandwich, 15°/75°/0° quasi-sandwich, and 0°/90°/0°/90° arranged modes. The fracture resistance and the relevant toughening mechanisms are directly related to the highly-hierarchical crossed-lamellar structures on different length scales. This article is aimed to review the different arranged modes of crossed-lamellar structures existing in nature, with special attention to their impact on the mechanical behavior and salient toughening mechanisms over several length scales, for seeking the design guidelines for the fabrication of bio-inspired advanced engineering materials that are adaptive to different loading conditions.

Shell palaeoproteomics: First application of peptide mass fingerprinting for the rapid identification of mollusc shells in archaeology

Molluscs were one of the most widely-used natural resources in the past, and their shells are abundant among archaeological findings. However, our knowledge of the variety of shells that were circulating in prehistoric times (and thus their socio-economic and cultural value) is scarce due to the difficulty of achieving taxonomic determination of fragmented and/or worked remains. This study aims to obtain molecular barcodes based on peptide mass fingerprints (PMFs) of intracrystalline proteins, in order to obtain shell identification. Palaeoproteomic applications on shells are challenging, due to low concentration of molluscan proteins and an incomplete understanding of their sequences. We explore different approaches for protein extraction from small-size samples (<20 mg), followed by MALDI-TOF-MS analysis. The SP3 (single-pot, solid-phase) sample preparation method was found to be the most successful in retrieving the intracrystalline protein fraction from seven molluscan shell taxa, which belong to different phylogenetic groups, possess distinct microstructures and are relevant for archaeology. Furthermore, all the shells analysed, including a 7000-year-old specimen of the freshwater bivalve Pseudunio, yielded good-quality distinctive spectra, demonstrating that PMFs can be used for shell taxon determination. Our work suggests good potential for large-scale screening of archaeological molluscan remains. SIGNIFICANCE: We characterise for the first time the peptide mass fingerprints of the intracrystalline shell protein fraction isolated from different molluscan taxa. We demonstrate that these proteins yield distinctive PMFs, even for shells that are phylogenetically related and/or that display similar microstructures. Furthermore, we extend the range of sample preparation approaches for "shellomics" by testing the SP3 method, which proved to be well-suited to shell protein extraction from small-size and protein-poor samples. This work thus lays the foundations for future large-scale applications for the identification of mollusc shells and other invertebrate remains from the archaeological and palaeontological records.

The shell matrix of the european thorny oyster, Spondylus gaederopus: microstructural and molecular characterization

Molluscs, the largest marine phylum, display extraordinary shell diversity and sophisticated biomineral architectures. However, mineral-associated biomolecules involved in biomineralization are still poorly characterised. We report the first comprehensive structural and biomolecular study of Spondylus gaederopus, a pectinoid bivalve with a peculiar shell texture. Used since prehistoric times, this is the best-known shell of Europe's cultural heritage. We find that Spondylus microstructure is very poor in mineral-bound organics, which are mostly intercrystalline and concentrated at the interface between structural layers. Using high-resolution liquid chromatography tandem mass spectrometry (LC-MS/MS) we characterized several shell protein fractions, isolated following different bleaching treatments. Several peptides were identified as well as six shell proteins, which display features and domains typically found in biomineralized tissues, including the prevalence of intrinsically disordered regions. It is very likely that these sequences only partially represent the full proteome of Spondylus, considering the lack of genomics data for this genus and the fact that most of the reconstructed peptides do not match with any known shell proteins, representing consequently lineage-specific sequences. This work sheds light onto the shell matrix involved in the biomineralization in spondylids. Our proteomics data suggest that Spondylus has evolved a shell-forming toolkit, distinct from that of other better studied pectinoids - fine-tuned to produce shell structures with high mechanical properties, while limited in organic content. This study therefore represents an important milestone for future studies on biomineralized skeletons and provides the first reference dataset for forthcoming molecular studies of Spondylus archaeological artifacts.

Lamellar architectures in stiff biomaterials may not always be templates for enhancing toughness in composites

The layered architecture of stiff biological materials often endows them with surprisingly high fracture toughness in spite of their brittle ceramic constituents. Understanding the link between organic-inorganic layered architectures and toughness could help to identify new ways to improve the toughness of biomimetic engineering composites. We study the cylindrically layered architecture found in the spicules of the marine sponge Euplectella aspergillum. We cut micrometer-size notches in the spicules and measure their initiation toughness and average crack growth resistance using flexural tests. We find that while the spicule's architecture provides toughness enhancements, these enhancements are relatively small compared to prototypically tough biological materials, like nacre. We investigate these modest toughness enhancements using computational fracture mechanics simulations.

Structure-behaviour correlations between two genetically closely related snail species

Species, through their structure and composition, have evolved to respond to environmental constraints. Predator-prey interactions are among environmental pressures that can lead to speciation, but it remains unclear how this pressure can be related to the material structure and performance. Recently, two land snails, Karaftohelix editha and Karaftohelix gainesi, were found to exhibit divergent phenotypes and responses to predation despite sharing the same habitat and most of their genome. Indeed, under attack from a beetle, K. editha snails retract into their shell whereas K. gainesi snails swing their shell. In this paper, we looked at the microstructure, composition, morphology and mechanics of the shells of those two species and discuss potential relationships between material structure and the snail defence behaviour. The results of this study provide additional arguments for the role of predator-prey interactions on speciation, as well as an unusual approach for the design of biomimetic structures adapted to a particular function.

The Shell of the Invasive Bivalve Species Dreissena polymorpha: Biochemical, Elemental and Textural Investigations

The zebra mussel Dreissena polymorpha is a well-established invasive model organism. Although extensively used in environmental sciences, virtually nothing is known of the molecular process of its shell calcification. By describing the microstructure, geochemistry and biochemistry/proteomics of the shell, the present study aims at promoting this species as a model organism in biomineralization studies, in order to establish a bridge with ecotoxicology, while sketching evolutionary conclusions. The shell of D. polymorpha exhibits the classical crossed-lamellar/complex crossed lamellar combination found in several heterodont bivalves, in addition to an external thin layer, the characteristics of which differ from what was described in earlier publication. We show that the shell selectively concentrates some heavy metals, in particular uranium, which predisposes D. polymorpha to local bioremediation of this pollutant. We establish the biochemical signature of the shell matrix, demonstrating that it interacts with the in vitro precipitation of calcium carbonate and inhibits calcium carbonate crystal formation, but these two properties are not strongly expressed. This matrix, although overall weakly glycosylated, contains a set of putatively calcium-binding proteins and a set of acidic sulphated proteins. 2D-gels reveal more than fifty proteins, twenty of which we identify by MS-MS analysis. We tentatively link the shell protein profile of D. polymorpha and the peculiar recent evolution of this invasive species of Ponto-Caspian origin, which has spread all across Europe in the last three centuries.

Morphological and microscopic characterization of five commonly-used testacean traditional Chinese medicines

Testacean traditional Chinese medicine (TTCM), derived from the outer shell of sea or freshwater mollusks, is a special and important category of Chinese medicinal materials. To ensure the effective use of TTCM, a comparative identification study was performed on five commonly-used testacean drugs, including Haliotidis Concha, Arcae Concha, Meretricis Concha, Ostreae Concha and Margaritifera Concha (Shijueming, Walengzi, Geqiao, Muli and Zhenzhumu in Chinese, respectively). Typical morphological photographs of the crude drugs were acquired, and the key microscopic characteristics of the derived powders under normal light microscope and polarized light microscope were summarized. The major results can be concluded as follows: (1) the original species involved in the five TTCMs could be distinguished by their respective interspecies morphological characteristics; (2) the key identification characteristics of the five powdered crude drugs were mainly crystal fragments, with the fragment features under both normal light and polarized light microscope providing powerful points for differentiating the five commonly-used testacean drugs. This study demonstrated that it is feasible to provide authentication for these five kinds of TTCMs by the combination of morphology with microscopy.

Microscopy techniques for investigating the control of organic constituents on biomineralization

This article addresses recent advances in the application of microscopy techniques to characterize crystallization processes as they relate to biomineralization and bio-inspired materials synthesis. In particular, we focus on studies aimed at revealing the role organic macromolecules and functionalized surfaces play in modulating the mechanisms of nucleation and growth. In nucleation studies, we explore the use of methods such as in situ transmission electron microscopy, atomic force microscopy, and cryogenic electron microscopy to delineate formation pathways, phase stabilization, and the competing effects of free energy and kinetic barriers. In growth studies, emphasis is placed on understanding the interactions of macromolecular constituents with growing crystals and characterization of the internal structures of the resulting composite crystals using techniques such as electron tomography, atom probe tomography, and vibrational spectromicroscopy. Examples are drawn from both biological and bio-inspired synthetic systems.

Microstructures in shells of the freshwater gastropod Viviparus viviparus: a potential sensor for temperature change?

Mollusk shells contain a plethora of information on past climate variability. However, only a limited toolkit is currently available to reconstruct such data from the shells. The environmental data of some proxies (e.g. Sr/Ca ratios) is obscured by physiological effects, whereas other proxies, such as δ(18)O, simultaneously provide information on two or more different environmental variables. The present study investigates whether microstructures of the freshwater gastropod Viviparus viviparus provide an alternative means to reconstruct past water temperature. Cold and highly variable temperature regimes resulted in the precipitation of highly unordered first-order lamellae of simple crossed-lamellar (XLM) structures if new shell formed from scratch. However, during stable and warm conditions, well-ordered first-order lamellae were laid down irrespective of pre-existing shell material. Homogeneous first-order lamellae also formed during times of cold and highly variable temperatures if the new shell was deposited onto existing shell material with well-ordered first-order lamellae. The growth front seems to contain instructions for building specific microstructure variants, irrespective of environmental conditions. However, if this template is missing, the animal forms a deviating microstructure. Under extremely stressful situations (e.g. removal from habitat, calcein staining, extreme temperature shifts), the gastropod precipitates an evolutionarily older microstructure (irregular simple prisms) rather than XLM structures. These shell portions were macroscopically described as disturbance lines. In addition, repetitive, presumably periodic growth patterns were observed, which consisted of gradually changing third-order lamellae between consecutive faint, organic-rich growth lines. These growth patterns were probably controlled by intrinsic biological clocks and exhibited a two-daily periodicity. The results of this study may provide the basis for using changes in the microstructure of shell sections as a new sensor (environmental proxy) for past water temperature.