Dynamic single-crystal diffraction studies using synchrotron radiation

Photocrystallography of [Ru(bpy)2(dmso)2]2+ reveals an O-bonded metastable state

We report the first instance of observing the phototriggered isomerization of dmso ligands on a bis sulfoxide complex, [Ru(bpy)₂(dmso)₂], in the crystalline solid state. The solid-state UV-vis spectrum of the crystal demonstrates an increase in optical density around 550 nm after irradiation, which is consistent with the solution isomerization results. Digital images of the crystal before and after irradiation display a notable color change (pale orange to red) and cleavage occurs along planes, (1̄01) and (100), during irradiation. Single crystal X-ray diffraction data also confirms that isomerization is occurring throughout the lattice and a structure that contains a mix of the S,S and O,O/S,O isomer was attained from a crystal irradiated ex situ. In situ irradiation XRD studies reveal that the percentage of the O-bonded isomer increases as a function of 405 nm exposure time.

Axial vs equatorial: Capturing the intramolecular charge transfer state geometry in conformational polymorphic crystals of a donor-bridge-acceptor dyad in nanosecond-time-scale

Two conformational polymorphs of a donor-bridge-acceptor (D-B-A) dyad, p-(CH3)2N-C6H4-(CH2)2-(1-pyrenyl)/PyCHDMA, were studied, where the electron donor (D) moiety p-(CH3)2N-C6H4/DMA is connected through a bridging group (B), -CH2-CH2-, to the electron acceptor (A) moiety pyrene. Though molecular dyads like PyCHDMA have the potential to change solar energy into electrical current through the process of photoinduced intramolecular charge transfer (ICT), the major challenge is the real-time investigation of the photoinduced ICT process in crystals, necessary to design solid-state optoelectronic materials. The time-correlated single photon counting (TCSPC) measurements with the single crystals showed that the ICT state lifetime of the thermodynamic form, PyCHDMA1 (pyrene and DMA: axial), is ∼3 ns, whereas, for the kinetic form, PyCHDMA20 (pyrene and DMA: equatorial), it is ∼7 ns, while photoexcited with 375 nm radiation. The polymorphic crystals were photo-excited and subsequently probed with a pink Laue x-ray beam in time-resolved x-ray diffraction (TRXRD) measurements. The TRXRD results suggest that in the ICT state, due to electron transfer from the tertiary N-atom in DMA moiety to the bridging group and pyrene moiety, a decreased repulsion between the lone-pair and the bond-pair at N-atom induces planarity in the C-N-(CH3)2 moiety, in both polymorphs. The Natural Bond Orbital calculations and partial atomic charge analysis by Hirshfeld partitioning also corroborated the same. Although the interfragment charge transfer (IFCT) analysis using the TDDFT results showed that for the charge transfer excitation in both conformers, the electrons were transferred from the DMA moiety to mostly the pyrene moiety, the bridging group has little role to play in that.

An optically reversible room-temperature solid-state cobalt(III) photoswitch based on nitro-to-nitrito linkage isomerism

A simple trinitro cobalt complex [Co(3,3'-diamino-N-methylpropanediamine)(NO₂)₃] was proven to be photoswitchable at room temperature as the Pca2₁ polymorph with the maximum nitro-to-nitrito conversion reaching ca. 55%. Solid-state IR, UV-vis and XRD indicate that the transformation can be triggered optically in both ways via 470 nm and 570-660 nm LED light, respectively.

LED-pump-X-ray-multiprobe crystallography for sub-second timescales

The visualization of chemical processes that occur in the solid-state is key to the design of new functional materials. One of the challenges in these studies is to monitor the processes across a range of timescales in real-time. Here, we present a pump-multiprobe single-crystal X-ray diffraction (SCXRD) technique for studying photoexcited solid-state species with millisecond-to-minute lifetimes. We excite using pulsed LEDs and synchronise to a gated X-ray detector to collect 3D structures with sub-second time resolution while maximising photo-conversion and minimising beam damage. Our implementation provides complete control of the pump-multiprobe sequencing and can access a range of timescales using the same setup. Using LEDs allows variation of the intensity and pulse width and ensures uniform illumination of the crystal, spreading the energy load in time and space. We demonstrate our method by studying the variable-temperature kinetics of photo-activated linkage isomerism in [Pd(Bu4dien)(NO2)][BPh4] single-crystals. We further show that our method extends to following indicative Bragg reflections with a continuous readout Timepix3 detector chip. Our approach is applicable to a range of physical and biological processes that occur on millisecond and slower timescales, which cannot be studied using existing techniques.

Relating Excited States to the Dynamics of Macroscopic Strain in Photoresponsive Crystals

Exposure of a photoreactive single crystal to light with a wavelength offset from its absorption maximum can have two distinct effects. The first is the "direct" effect, wherein the excited state generated in individual chemical species is influenced. The second is the "indirect" effect, which describes the penetration of light into the crystal and hence the spatial propagation and completeness of transformation. We illustrate using the nitro-nitrito isomerization of [Co(NH₃)₅NO₂]Cl(NO₃) as an example that the direct and indirect effects can be independently determined. This is achieved by comparing the dynamics of macroscopic crystal deformation (bending curvature and crystal elongation) induced by the photochemical reaction when irradiating a crystal at the absorption maximum and at different band edges (above or below the maximum) of the same band. Quantitative description of the macroscopic strain dynamics in comparison with experiments allowed us to suggest that irradiation at different tails of the same absorption band causes isomerization to proceed via different excited states and an additional photochemical reaction (presumably, reverse nitrito-nitro isomerization) can occur on irradiation at the ligand-field band edges.

Photocrystallographic and spectroscopic studies of a model (N,N,O)-donor square-planar nickel(II) nitro complex: in search of high-conversion and stable photoswitchable materials

A new, cheap, easy-to-synthesize and air-stable photoswitchable nickel(II) complex, QTNiNO2, is reported. The metal centre in QTNiNO2 is coordinated by a nitro group and a [2-methyl-8-amino-quinoline]-1-tetralone ligand. The compound crystallizes in the tetragonal space group I41/a with one complex molecule comprising the asymmetric unit, and the crystals are stable under ambient conditions. Irradiation of the solid-state form of QTNiNO2 with 530-660 nm LED light at 160 K converts the ambidentate nitro moiety fully to the nitrito linkage isomer which is stable up to around 230 K, as indicated by IR spectroscopy measurements. The structures of all species present in the examined crystals and their thermal stability were confirmed via X-ray multi-temperature and photocrystallographic experiments. The impact of temperature on the (photo)isomerization reaction taking place in a single crystal was additionally investigated. The experimental results are supported by computational analyses of crystal packing and intermolecular interactions that influence the isomerization process studied.

Instrument-model refinement in normalized reciprocal-vector space for X-ray Laue diffraction

A simple yet efficient instrument-model refinement method for X-ray diffraction data is presented and discussed. The method is based on least-squares minimization of differences between respective normalized (i.e. unit length) reciprocal vectors computed for adjacent frames. The approach was primarily designed to work with synchrotron X-ray Laue diffraction data collected for small-molecule single-crystal samples. The method has been shown to work well on both simulated and experimental data. Tests performed on simulated data sets for small-molecule and protein crystals confirmed the validity of the proposed instrument-model refinement approach. Finally, examination of data sets collected at both BioCARS 14-ID-B (Advanced Photon Source) and ID09 (European Synchrotron Radiation Facility) beamlines indicated that the approach is capable of retrieving goniometer parameters (e.g. detector distance or primary X-ray beam centre) reliably, even when their initial estimates are rather inaccurate.

Photocrystallographic Studies on Transition Metal Nitrito Metastable Linkage Isomers: Manipulating the Metastable State

The design of solid-state materials whose properties and functions can be manipulated in a controlled manner by the application of light is an important objective in modern materials chemistry. When the material changes property or function, it is helpful if a simple measurable response, such as a change in color, can be detected. Potential applications for such materials are wide ranging, from data storage to smart windows. With the growing emphasis on solid-state materials that have two or more accessible energy states and which exhibit bistability, attention has turned to transition metal complexes that contain ambidentate ligands that can switch between linkage isomeric forms when activated by light. Suitable ligands that show promise in this area include nitrosyls, nitro groups, and coordinated sulfur dioxide molecules, each of which can coordinate to a metal center in more than one bonding mode. A nitrosyl normally coordinates through its N atom (η¹-NO) but when photoactivated can undergo isomerism and coordinate through its O atom (η¹-ON). At a molecular level, converting between these two configurations can act as an “on/off” switch. The analysis of such materials has been aided by the development of photocrystallographic techniques, which allow the full three-dimensional structure of a single crystal of a complex, under photoactivation, to be determined, when it is in either a metastable or short-lived excited state. The technique effectively brings the dimension of “time” to the crystallographic experiment and brings us closer to being able to watch solid-state processes occur in real time.

In this Account, we highlight the advances made in photocrystallography for studying solid-state, photoactivated linkage isomerism and describe the factors that favor the switching process and which allow complete switching between isomers. We demonstrate that control of temperature is key to achieving either a metastable state or an excited state with a specific lifetime. We draw our conclusions from published work on the formation of photoactivated metastable states for nitrosyl and sulfur dioxide complexes and from our own work on photoactivated switching between nitro and nitrito groups. We show that efficient switching between isomers is dependent on the wavelength of light used, on the temperature at which the experiment is carried out, on the flexibility of the crystal lattice, and on both the electronic and steric environment of the ambidentate ligand undergoing isomerism. We have designed and prepared a number of nitro/nitrito isomeric metal complexes that undergo reversible 100% conversion between the two forms at temperatures close to room temperature. Through our fine control over the generation of the metastable states, it should be possible to effectively “dial up” a suitable temperature to give a metastable or an excited state with a desired lifetime.

Sequential X-ray-Induced Single-Crystal to Single-Crystal Transformation followed by Topotactic Reduction in a Potassium Crown Ether Complex of Tetrachloroaurate(III)

During data collection, the unreported potassium crown ether salt [K(18-crown-6][AuCl₄] undergoes a sequential X-ray-induced and irreversible single-crystal to single-crystal transformation from P1̅ to C2/ c followed by a topotactic reduction to crystalline [K(18-crown-6][AuCl₂] within the same C2/ c space group.

First heterobimetallic AgI-CoIII coordination compound with both bridging and terminal -NO2 coordination modes: synthesis, characterization, structural and computational studies of (PPh3)2AgI-(μ-κ2O,O':κN-NO2)-CoIII(DMGH)2(κN-NO2)

An unusual heterobimetallic bis(triphenylphosphane)(NO₂)Ag^I-Co^III(dimethylglyoximate)(NO₂) coordination compound with both bridging and terminal -NO₂ (nitro) coordination modes has been isolated and characterized from the reaction of [CoCl(DMGH)₂(PPh₃)] (DMGH₂ is dimethylglyoxime or N,N'-dihydroxybutane-2,3-diimine) with excess AgNO₂. In the title compound, namely bis(dimethylglyoximato-1κ²O,O')(μ-nitro-1κN:2κ²O,O')(nitro-1κN)bis(triphenylphosphane-2κP)cobalt(III)silver(I), [AgCo(C₄H₇N₂O₂)₂(NO₂)₂(C₁₈H₁₅P)₂], one of the ambidentate -NO₂ ligands, in a bridging mode, chelates the Ag^I atom in an isobidentate κ²O,O'-manner and its N atom is coordinated to the Co^III atom. The other -NO₂ ligand is terminally κN-coordinated to the Co^III atom. The structure has been fully characterized by X-ray crystallography and spectroscopic methods. Density functional theory (DFT) and time-dependent density functional theory (TD-DFT) have been used to study the ground-state electronic structure and elucidate the origin of the electronic transitions, respectively.

The growing importance of crystalline molecular flasks and the crystalline sponge method

This article showcases recent advancements made using crystalline molecular flasks and the widening list of prospective applications for the crystalline sponge method. This expansion has coincided with an increasing number of materials termed crystalline sponges, and a report of a predictive means of identifying candidates from crystallographic databases. The crystalline sponge method's primary application has been determination of absolute configuration, and this has evolved from the analysis of carefully chosen planar aromatic guests to more diverse identification of natural products, biological metabolites, and analysis of volatile chemical components. However with time-resolved X-ray crystallography providing arguably the most informative atomic scale insights of dynamic chemical processes, this application of the crystalline sponge method may soon eclipse structural determination in terms of importance.

Understanding solid-state photoswitching in [Re(OMe2-bpy)(CO)3(η1-NO2)] crystals via in situ photocrystallography

Single-crystal-to-single-crystal linkage isomerism is determined in a photoswitchable Re(i)-bpy crystal, shedding new light on the photoactive properties of potential Re(i)-photocatalysts.

The impact of hydrogen bonding on 100% photo-switching in solid-state nitro–nitrito linkage isomers

Temperature-regulated control of photo-induced linkage isomer switching engineered through intermolecular hydrogen bonding to the nitro-(η¹-NO₂) group.

Differentiating Two Nitrosylruthenium Isomeric Complexes by Steady-State and Ultrafast Infrared Spectroscopies

The [Ru(II)-NO⁺] group affects the structure and chemical reactivity of nitrosylruthenium(II) complexes. A characteristic infrared absorption band due to the nitrosyl (NO) stretching motion is shown in the frequency region 1800-1900 cm^-1. In this work, linear infrared (IR) and nonlinear IR methods, including pump-probe and two-dimensional (2D) IR, were utilized to study the structures and dynamics of two isomeric nitrosylruthenium complexes [Ru(OAc)(2mqn)₂NO] (H2mqn = 2-methyl-8-quinolinol) in cis and trans isomeric configurations in a weak polar solvent (CDCl₃). Using the NO stretching mode as a vibrational probe, information about local structural dynamics of the Ru complex as well as solvent fluctuation dynamics was obtained. In particular, a "structured" solvent environment is believed to form in the vicinity of the NO group in the case of the cis isomer with the aid of a neighboring OAc ligand, which is the reason for more efficient vibrational relaxation but more inhomogeneously distributed solvent and thus associated slower spectral diffusion. Our results also suggest a more anharmonic potential surface for the NO stretching mode in the less stable trans isomer.

A portable light-delivery device forin situphotocrystallographic experiments in the home laboratory

Photocrystallographic experiments provide valuable information on how crystalline samples interact with light, yielding light-induced structural changes. Studied processes include, among others, solid state chemical reactions, as well as isolation and characterization of various metastable states. Thus, some instrumentation development efforts in the field have been dedicated to facilitating such experiments using a home X-ray source. In this contribution, a portable, easy-to-use and adjustable light-delivery device for home single-crystal diffractometers is described. The whole system consists of adjustable laser-focusing optics and a holder, which can be conveniently attached to a goniometer, as an additional sample conditioning device. The light-delivery device was designed to reduce any goniometer movement limitations. It allows one to conveniently perform photocrystallographic experiments without violation of the X-ray safety protocols, even when changing the light source is necessary. Testin situphotocrystallographic experiments performed on the literature-reported Ni(NO2)2(dppe) complex [dppe is bis(diphenylphosphino)ethane] confirm the effectiveness and applicability of the device for conducting linkage isomer single-crystal-to-single-crystal transformations.

Raising the (metastable) bar: 100% photo-switching in [Pd(Bu4dien)(η1-N̲O2)]+ approaches ambient temperature

Rapid, fully-reversible photo-switching is observed under near-ambient conditions for the first time in crystals of a novel palladium–nitrite linkage isomer.

Electronic excitations in molecular solids: bridging theory and experiment

As the spatial and temporal resolution accessible to experiment and theory converge, computational chemistry is an increasingly powerful tool for modelling and interpreting spectroscopic data. However, the study of molecular processes, in particular those related to electronic excitations (e.g. photochemistry), frequently pushes quantum-chemical techniques to their limit. The disparity in the level of theory accessible to periodic and molecular calculations presents a significant challenge when modelling molecular crystals, since accurate calculations require a high level of theory to describe the molecular species, but must also take into account the influence of the crystalline environment on their properties. In this article, we briefly review the different classes of quantum-chemical techniques, and present an overview of methods that account for environmental influences with varying levels of approximation. Using a combination of solid-state and molecular calculations, we quantitatively evaluate the performance of implicit-solvent models for the [Ni(Et4dien)(η2-O,ON)(η1-NO2)] linkage-isomer system as a test case. We focus particularly on the accurate reproduction of the energetics of the isomerisation, and on predicting spectroscopic properties to compare with experimental results. This work illustrates how the synergy between periodic and molecular calculations can be exploited for the study of molecular crystals, and forms a basis for the investigation of more challenging phenomena, such as excited-state dynamics, and for further methodological developments.

Reversible single-crystal-to-single-crystal photoisomerization of a silver(i) macropolyhedral borane

A reversible conversion of [trans-B₂₀H₁₈]²⁻ to [iso-B₂₀H₁₈]²⁻ and linkage isomerism occur in a single crystal of {Ag₂(PPh₃)₆[B₂₀H₁₈]} (the positions of [Ag(PPh₃)₃]⁺ are shown in red and blue).

Energetics, thermal isomerisation and photochemistry of the linkage-isomer system [Ni(Et4dien)(η2-O,ON)(η1-NO2)]

Isomerisation of an NO₂ ligand coordinated to Ni in a molecular crystal is explored using a range of quantum chemical techniques.

Chemistry Central Journal themed issue: Current Topics in Chemical Crystallography

No abstract

Thermal and photochemical control of nitro–nitrito linkage isomerism in single-crystals of [Ni(medpt)(NO2)(η2-ONO)]

[Ni(medpt)(NO₂)(η²-ONO)] displays an equilibrium between the η¹-NO₂ and the η¹-ONO linkage isomers between 150–298 K; upon photoactivation at 100 K the percentage of the η¹-ONO isomer increases.