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Hatcher LE, Warren MR, Skelton JM, Pallipurath AR, Saunders LK, Allan DR, Hathaway P, Crevatin G, Omar D, Williams BH, Coulson BA, Wilson CC, Raithby PR. LED-pump-X-ray-multiprobe crystallography for sub-second timescales. Commun Chem 2022; 5:102. [PMID: 36697958 PMCID: PMC9814726 DOI: 10.1038/s42004-022-00716-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Accepted: 08/08/2022] [Indexed: 02/01/2023] Open
Abstract
The visualization of chemical processes that occur in the solid-state is key to the design of new functional materials. One of the challenges in these studies is to monitor the processes across a range of timescales in real-time. Here, we present a pump-multiprobe single-crystal X-ray diffraction (SCXRD) technique for studying photoexcited solid-state species with millisecond-to-minute lifetimes. We excite using pulsed LEDs and synchronise to a gated X-ray detector to collect 3D structures with sub-second time resolution while maximising photo-conversion and minimising beam damage. Our implementation provides complete control of the pump-multiprobe sequencing and can access a range of timescales using the same setup. Using LEDs allows variation of the intensity and pulse width and ensures uniform illumination of the crystal, spreading the energy load in time and space. We demonstrate our method by studying the variable-temperature kinetics of photo-activated linkage isomerism in [Pd(Bu4dien)(NO2)][BPh4] single-crystals. We further show that our method extends to following indicative Bragg reflections with a continuous readout Timepix3 detector chip. Our approach is applicable to a range of physical and biological processes that occur on millisecond and slower timescales, which cannot be studied using existing techniques.
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Affiliation(s)
- Lauren E. Hatcher
- grid.7340.00000 0001 2162 1699Department of Chemistry, University of Bath, Bath, UK ,grid.5600.30000 0001 0807 5670School of Chemistry, Cardiff University, Cardiff, UK
| | - Mark R. Warren
- grid.18785.330000 0004 1764 0696Diamond Light Source, Harwell Science and Innovation Campus, Didcot, UK
| | - Jonathan M. Skelton
- grid.7340.00000 0001 2162 1699Department of Chemistry, University of Bath, Bath, UK ,grid.5379.80000000121662407Department of Chemistry, University of Manchester, Manchester, UK
| | - Anuradha R. Pallipurath
- grid.7340.00000 0001 2162 1699Department of Chemistry, University of Bath, Bath, UK ,grid.9909.90000 0004 1936 8403School of Chemical and Process Engineering, University of Leeds, Leeds, UK
| | - Lucy K. Saunders
- grid.18785.330000 0004 1764 0696Diamond Light Source, Harwell Science and Innovation Campus, Didcot, UK
| | - David R. Allan
- grid.18785.330000 0004 1764 0696Diamond Light Source, Harwell Science and Innovation Campus, Didcot, UK
| | - Paul Hathaway
- grid.18785.330000 0004 1764 0696Diamond Light Source, Harwell Science and Innovation Campus, Didcot, UK
| | - Giulio Crevatin
- grid.18785.330000 0004 1764 0696Diamond Light Source, Harwell Science and Innovation Campus, Didcot, UK
| | - David Omar
- grid.18785.330000 0004 1764 0696Diamond Light Source, Harwell Science and Innovation Campus, Didcot, UK
| | - Ben H. Williams
- grid.18785.330000 0004 1764 0696Diamond Light Source, Harwell Science and Innovation Campus, Didcot, UK
| | - Ben A. Coulson
- grid.5600.30000 0001 0807 5670School of Chemistry, Cardiff University, Cardiff, UK
| | - Chick C. Wilson
- grid.7340.00000 0001 2162 1699Department of Chemistry, University of Bath, Bath, UK
| | - Paul R. Raithby
- grid.7340.00000 0001 2162 1699Department of Chemistry, University of Bath, Bath, UK
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Saunders LK, Pallipurath AR, Gutmann MJ, Nowell H, Zhang N, Allan DR. A quantum crystallographic approach to short hydrogen bonds. CrystEngComm 2021; 23:6180-6190. [PMID: 34588923 PMCID: PMC8436739 DOI: 10.1039/d1ce00355k] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Accepted: 07/27/2021] [Indexed: 11/21/2022]
Abstract
In this work we use high-resolution synchrotron X-ray diffraction for electron density mapping, in conjunction with ab initio modelling, to study short O-H⋯O and O+-H⋯O- hydrogen bonds whose behaviour is known to be tuneable by temperature. The short hydrogen bonds have donor-acceptor distances in the region of 2.45 Å and are formed in substituted urea and organic acid molecular complexes of N,N'-dimethylurea oxalic acid 2 : 1 (1), N,N-dimethylurea 2,4-dinitrobenzoate 1 : 1 (2) and N,N-dimethylurea 3,5-dinitrobenzoic acid 2 : 2 (3). From the combined analyses, these complexes are found to fall within the salt-cocrystal continuum and exhibit short hydrogen bonds that can be characterised as both strong and electrostatic (1, 3) or very strong with a significant covalent contribution (2). An additional charge assisted component is found to be important in distinguishing the relatively uncommon O-H⋯O pseudo-covalent interaction from a typical strong hydrogen bond. The electron density is found to be sensitive to the extent of static proton transfer, presenting it as a useful parameter in the study of the salt-cocrystal continuum. From complementary calculated hydrogen atom potentials, we attribute changes in proton position to the molecular environment. Calculated potentials also show zero barrier to proton migration, forming an 'energy slide' between the donor and acceptor atoms. The better fundamental understanding of the short hydrogen bond in the 'zone of fluctuation' presented in a salt-cocrystal continuum, enabled by studies like this, provide greater insight into their related properties and can have implications in the regulation of pharmaceutical materials.
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Affiliation(s)
- Lucy K Saunders
- Diamond Light Source, Harwell Science and Innovation Campus Didcot OX11 0DE UK
| | - Anuradha R Pallipurath
- School of Chemical and Process Engineering, University of Leeds Leeds LS2 9JT UK
- Research Complex at Harwell Didcot Oxfordshire OX11 0DE UK
- EPSRC Centre for Innovative Manufacturing in Continuous Manufacturing and Advanced Crystallization, University of Strathclyde G1 1RD UK
| | - Matthias J Gutmann
- ISIS Pulsed Muon and Neutron Source, Rutherford Appleton Laboratory, Harwell Oxford Didcot OX11 0QX UK
| | - Harriott Nowell
- Diamond Light Source, Harwell Science and Innovation Campus Didcot OX11 0DE UK
| | - Ningjin Zhang
- Chemistry, Faculty of Natural and Environmental Sciences, Highfield Campus, University of Southampton Southampton SO17 1HE UK
| | - David R Allan
- Diamond Light Source, Harwell Science and Innovation Campus Didcot OX11 0DE UK
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Pallipurath AR, Civati F, Sibik J, Crowley C, Zeitler JA, McArdle P, Erxleben A. A comprehensive spectroscopic study of the polymorphs of diflunisal and their phase transformations. Int J Pharm 2017; 528:312-321. [PMID: 28603011 DOI: 10.1016/j.ijpharm.2017.06.020] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2017] [Revised: 06/06/2017] [Accepted: 06/07/2017] [Indexed: 10/19/2022]
Abstract
Understanding phase transitions in pharmaceutical materials is of vital importance for drug manufacturing, processing and storage. In this paper we have carried out comprehensive high-resolution spectroscopic studies on the polymorphs of the non-steroidal anti-inflammatory drug diflunisal that has four known polymorphs, forms I-IV (FI-FIV), three of which have known crystal structures. Phase transformations during milling, heating, melt-quenching and exposure to high relative humidity were investigated using Raman and terahertz spectroscopy in combination with differential scanning calorimetry and X-ray powder diffraction. The observed phase transformations indicate the stability order FIII>FI>FII, FIV. Furthermore, crystallization experiments from the gas phase and from solution by fast evaporation of different solvents were carried out. Fast evaporation of an ethanolic solution below 70°C was identified as a reliable and convenient method to obtain the somewhat elusive FII in bulk quantities.
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Affiliation(s)
- Anuradha R Pallipurath
- School of Chemistry, National University of Ireland, Galway, Ireland; Department of Chemistry, University of Bath, Claverton Down, Bath BA2 1AY, UK
| | - Francesco Civati
- School of Chemistry, National University of Ireland, Galway, Ireland
| | - Juraj Sibik
- Department of Chemical Engineering and Biotechnology, Pembroke Street, Cambridge CB2 3RA, UK
| | - Clare Crowley
- Materials and Surface Science Institute, Department of Chemical and Environmental Sciences, University of Limerick, Ireland
| | - J Axel Zeitler
- Department of Chemical Engineering and Biotechnology, Pembroke Street, Cambridge CB2 3RA, UK
| | - Patrick McArdle
- School of Chemistry, National University of Ireland, Galway, Ireland.
| | - Andrea Erxleben
- School of Chemistry, National University of Ireland, Galway, Ireland.
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Pallipurath AR, Skelton JM, Warren MR, Kamali N, McArdle P, Erxleben A. Sulfamerazine: Understanding the Influence of Slip Planes in the Polymorphic Phase Transformation through X-Ray Crystallographic Studies and ab Initio Lattice Dynamics. Mol Pharm 2015; 12:3735-48. [DOI: 10.1021/acs.molpharmaceut.5b00504] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - Jonathan M. Skelton
- Department
of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, United Kingdom
| | - Mark R. Warren
- Beamline
I19, Diamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, England
| | - Naghmeh Kamali
- School
of Chemistry, National University of Ireland, Galway, Ireland
| | - Patrick McArdle
- School
of Chemistry, National University of Ireland, Galway, Ireland
| | - Andrea Erxleben
- School
of Chemistry, National University of Ireland, Galway, Ireland
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