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Klučáková M, Enev V. Migration of copper(II) ions in humic systems-effect of incorporated calcium(II), magnesium(II), and iron(III) ions. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024:10.1007/s11356-024-34758-w. [PMID: 39167144 DOI: 10.1007/s11356-024-34758-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2024] [Accepted: 08/16/2024] [Indexed: 08/23/2024]
Abstract
The mobility of heavy metals in natural soil systems can be affected by the properties and compositions of those systems: the content and quality of organic matter as well as the character of inorganic constituents. In this work, the diffusion of copper(II) ions in humic hydrogels with incorporated calcium(II), magnesium(II), and iron(III) ions was investigated. The methods of instantaneous planar source and of constant source were used. Experimental data yielded the time development of the concentration in hydrogels and the values of effective diffusion coefficients. The coefficients include both the influence of the hydrogel structure and the interaction of diffusing particles with the hydrogel. Our results showed that the presence of natural metal ions such as calcium, magnesium, or iron can strongly affect the diffusivity of copper in humic systems. They indicate that the mobility of copper ions depends on their concentration. The mobility can be supported by higher contents of copper in the system. While the incorporation of Ca and Mg resulted in the decrease in the diffusivity of copper ions, the incorporation of Fe(III) into humic hydrogel resulted in an increase in the diffusivity of Cu(II) in the hydrogel in comparison with pure humic hydrogel.
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Affiliation(s)
- Martina Klučáková
- Brno University of Technology, Faculty of Chemistry, Purkyňova 118, 612 00, Brno, Czech Republic.
| | - Vojtěch Enev
- Brno University of Technology, Faculty of Chemistry, Purkyňova 118, 612 00, Brno, Czech Republic
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Wang X, Lyu T, Dong R, Liu H, Wu S. Dynamic evolution of humic acids during anaerobic digestion: Exploring an effective auxiliary agent for heavy metal remediation. BIORESOURCE TECHNOLOGY 2021; 320:124331. [PMID: 33157443 DOI: 10.1016/j.biortech.2020.124331] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Accepted: 10/22/2020] [Indexed: 05/22/2023]
Abstract
Information on the dynamic evolution of humic acid (HA) from anaerobic digestate and the potential of HA serving as an effective agent for remedying heavy metals is rather scarce. This study monitored the evolution of the structure and functional groups and metal-binding abilities of HA during chicken manure and corn stover anaerobic digestion (AD) processes. Higher increases in aromatic (41-66%) and oxygen-containing functional groups (37-45%) were observed in HA from the AD of corn stover, resulting in higher metal-binding abilities for Cu(II), Co(II), and Ni(II) than those of chicken manure AD. Moreover, HA extracted from fast (before day 12 for chicken manure and day 16 for corn stover), and slow (day 40) methane production stages performed different complexation capacities for the heavy metals. These results reveal the mechanisms of HA and heavy metal interactions, and confirm the potential of HA extracted from AD process for the remediation of heavy metals.
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Affiliation(s)
- Xiqing Wang
- Key Laboratory of Clean Utilization Technology for Renewable Energy, Ministry of Agriculture, College of Engineering, China Agricultural University, 100083 Beijing, PR China
| | - Tao Lyu
- Cranfield Water Science Institute, Cranfield University, College Road, Cranfield, Bedfordshire MK43 0AL, UK
| | - Renjie Dong
- Key Laboratory of Clean Utilization Technology for Renewable Energy, Ministry of Agriculture, College of Engineering, China Agricultural University, 100083 Beijing, PR China
| | - Hongtao Liu
- Institute of Geographic Science and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China
| | - Shubiao Wu
- Department of Agroecology, Aarhus University, Blichers Allé 20, 8830 Tjele, Denmark.
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Abstract
The molecular structure of a commercial sample of humic acids (HA) was investigated by membrane dialysis experiments (MD) and low-pressure size-exclusion chromatography (LP-SEC). MD showed that HA molecules were retained by dialysis membrane with a cut-off of 6–8 kDa, independently from HA concentration (15 or 150 mg L−1), NaHCO3 concentration (0.005–2.0 mol L−1), and from propan 2-ol (0–5 v/v %). SEC experiments at low pressure gave chromatograms with a broad peak, with an elution volume between those of the globular proteins bovine serum albumin (molecular weight = 66.5 kDa) and lysozyme from egg (molecular weight = 14.4 kDa). The pattern of the chromatogram did not vary with HA concentration, and second-run chromatograms of single eluted fractions showed relatively sharp peaks. From these data, we reveal that the commercial HA sample analysed has a macromolecular structure rather than being a supramolecular aggregate of relatively small molecules, as recently proposed for some samples of HA obtained from different sources.
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Sorption of Organic Pollutants by Humic Acids: A Review. Molecules 2020; 25:molecules25040918. [PMID: 32092867 PMCID: PMC7071110 DOI: 10.3390/molecules25040918] [Citation(s) in RCA: 50] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2020] [Revised: 02/12/2020] [Accepted: 02/18/2020] [Indexed: 11/17/2022] Open
Abstract
Humic acids (HA) are promising green materials for water and wastewater treatment. They show a strong ability to sorb cationic and hydrophobic organic pollutants. Cationic compounds interact mainly by electrostatic interaction with the deprotonated carboxylic groups of HA. Other functional groups of HA such as quinones, may form covalent bonds with aromatic ammines or similar organic compounds. Computational and experimental works show that the interaction of HA with hydrophobic organics is mainly due to π-π interactions, hydrophobic effect and hydrogen bonding. Several works report that sorbing efficiency is related to the hydrophobicity of the sorbate. Papers about the interaction between organic pollutants and humic acids dissolved in solution, in the solid state and adsorbed onto solid particles, like aluminosilicates and magnetic materials, are reviewed and discussed. A short discussion of the thermodynamics and kinetics of the sorption process, with indication of the main mistakes reported in literature, is also given.
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Tang Y, Li X, Dong B, Huang J, Wei Y, Dai X, Dai L. Effect of aromatic repolymerization of humic acid-like fraction on digestate phytotoxicity reduction during high-solid anaerobic digestion for stabilization treatment of sewage sludge. WATER RESEARCH 2018; 143:436-444. [PMID: 29986252 DOI: 10.1016/j.watres.2018.07.003] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2018] [Revised: 06/05/2018] [Accepted: 07/02/2018] [Indexed: 06/08/2023]
Abstract
Humification plays an important role in the sewage sludge stabilization treatment and probably influences the end-product ecotoxicity, which are not fully understood for high-solid anaerobic digestion (AD) process. This study monitored the aromaticity degree of humic acid-like fraction (HA) and detected digestate phytotoxicity during a 48-d high-solid AD. Significant repolymerization of aromatic structures in HA. Electrical conductivity (EC) of digestate changed negatively with the aromaticity degree in HA, and the digestate with high EC had low seed germination index (SGI). A positive correlation between SGI and the aromaticity degree of HA was found. Aromatic repolymerization of HA supplies more aromatic electron-rich sites to form neo-humic polymers and to determine the distribution of organic and/or inorganic phytotoxic compounds; thus, aromatic repolymerization of HA may control the digestate phytotoxicity by reducing excessive salinity. The results showed the effect of HA repolymerization on digestate stabilization and phytotoxicity reduction during the high-solid AD process. The inadequate phytotoxicity reduction efficiency (SGI ≤ 17%) may be ascribed to unaccomplished HA repolymerization, creating a demand for humification intensification studies.
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Affiliation(s)
- Yanfei Tang
- State Key Laboratory of Pollution Control and Resources Reuse, National Engineering Research Center for Urban Pollution Control, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, PR China
| | - Xiaowei Li
- State Key Laboratory of Pollution Control and Resources Reuse, National Engineering Research Center for Urban Pollution Control, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, PR China; School of Environmental and Chemical Engineering, Shanghai University, Shanghai 200444, PR China
| | - Bin Dong
- State Key Laboratory of Pollution Control and Resources Reuse, National Engineering Research Center for Urban Pollution Control, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, PR China
| | - Junjie Huang
- State Key Laboratory of Pollution Control and Resources Reuse, National Engineering Research Center for Urban Pollution Control, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, PR China
| | - Yanhong Wei
- State Key Laboratory of Pollution Control and Resources Reuse, National Engineering Research Center for Urban Pollution Control, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, PR China
| | - Xiaohu Dai
- State Key Laboratory of Pollution Control and Resources Reuse, National Engineering Research Center for Urban Pollution Control, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, PR China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai, PR China.
| | - Lingling Dai
- State Key Laboratory of Pollution Control and Resources Reuse, National Engineering Research Center for Urban Pollution Control, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, PR China.
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Monda H, Cozzolino V, Vinci G, Spaccini R, Piccolo A. Molecular characteristics of water-extractable organic matter from different composted biomasses and their effects on seed germination and early growth of maize. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 590-591:40-49. [PMID: 28288420 DOI: 10.1016/j.scitotenv.2017.03.026] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2016] [Revised: 03/03/2017] [Accepted: 03/03/2017] [Indexed: 05/04/2023]
Abstract
Four water extractable organic matter (WEOM) were obtained from composts made out of residues of: 1. artichoke (C-CYN), 2. artichoke/fennel (C-CYNF), 3. tomato/woodchips (C-TOM), 4. Municipal solid waste (C-MSW), and their bioactivity was tested for maize seed germination and maize seedling growth. The molecular properties of both original composts and their WEOM were characterized by spectroscopic (13C-CPMAS- and 1H NMR, FTIR-ATR), thermochemolysis-GC/MS, and thermal methods (TGA, DSC). While all WEOM had significant effects on plant growth, CYN-WEOM was the only material that concomitantly increased germination rate and primary and lateral root length of maize seedlings. The lignin-rich WEOM from green composts were generally more effective than those obtained from equally hydrophobic, but mainly alkyl-rich municipal organic wastes. A flexible conformational structure, due to the balanced content of aromatic compounds and carbohydrates, appeared to facilitate the release of bioactive molecules from WEOM suprastructures and stimulate plant growth.
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Affiliation(s)
- Hiarhi Monda
- Centro Interdipartimentale di Ricerca sulla Risonanza Magnetica Nucleare per l'Ambiente, l'Agro-Alimentare ed i Nuovi Materiali (CERMANU), Università di Napoli Federico II, Via Università 100, 80055 Portici, Italy.
| | - Vincenza Cozzolino
- Centro Interdipartimentale di Ricerca sulla Risonanza Magnetica Nucleare per l'Ambiente, l'Agro-Alimentare ed i Nuovi Materiali (CERMANU), Università di Napoli Federico II, Via Università 100, 80055 Portici, Italy.
| | - Giovanni Vinci
- Centro Interdipartimentale di Ricerca sulla Risonanza Magnetica Nucleare per l'Ambiente, l'Agro-Alimentare ed i Nuovi Materiali (CERMANU), Università di Napoli Federico II, Via Università 100, 80055 Portici, Italy
| | - Riccardo Spaccini
- Centro Interdipartimentale di Ricerca sulla Risonanza Magnetica Nucleare per l'Ambiente, l'Agro-Alimentare ed i Nuovi Materiali (CERMANU), Università di Napoli Federico II, Via Università 100, 80055 Portici, Italy
| | - Alessandro Piccolo
- Centro Interdipartimentale di Ricerca sulla Risonanza Magnetica Nucleare per l'Ambiente, l'Agro-Alimentare ed i Nuovi Materiali (CERMANU), Università di Napoli Federico II, Via Università 100, 80055 Portici, Italy
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Klučáková M, Věžníková K. The Role of Concentration and Solvent Character in the Molecular Organization of Humic Acids. Molecules 2016; 21:molecules21111410. [PMID: 27801814 PMCID: PMC6273730 DOI: 10.3390/molecules21111410] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2016] [Revised: 10/14/2016] [Accepted: 10/19/2016] [Indexed: 11/16/2022] Open
Abstract
The molecular organization of humic acids in different aqueous solutions was studied over a wide concentration range (0.01-10 g·dm-3). Solutions of humic acids were prepared in three different media: NaOH, NaCl, and NaOH neutralized by HCl after dissolution of the humic sample. Potentiometry, conductometry, densitometry, and high resolution ultrasound spectrometry were used in order to investigate conformational changes in the humic systems. The molecular organization of humic acids in the studied systems could be divided into three concentration ranges. The rearrangements were observed at concentrations of ~0.02 g·dm-3 and ~1 g·dm-3. The first "switch-over point" was connected with changes in the hydration shells of humic particles resulting in changes in their elasticity. The compressibility of water in the hydration shells is less than the compressibility of bulk water. The transfer of hydration water into bulk water increased the total compressibility of the solution, reducing the ultrasonic velocity. The aggregation of humic particles and the formation of rigid structures in systems with concentrations higher than 1 g·dm-3 was detected.
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Affiliation(s)
- Martina Klučáková
- Materials Research Centre, Faculty of Chemistry, Brno University of Technology, Purkyňova 118/464, Brno 612 00, Czech Republic.
| | - Kateřina Věžníková
- Materials Research Centre, Faculty of Chemistry, Brno University of Technology, Purkyňova 118/464, Brno 612 00, Czech Republic.
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Chalmin E, Perrette Y, Fanget B, Susini J. Investigation of organic matter entrapped in synthetic carbonates--a multimethod approach. MICROSCOPY AND MICROANALYSIS : THE OFFICIAL JOURNAL OF MICROSCOPY SOCIETY OF AMERICA, MICROBEAM ANALYSIS SOCIETY, MICROSCOPICAL SOCIETY OF CANADA 2013; 19:132-144. [PMID: 23257196 DOI: 10.1017/s1431927612013773] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Organic matter (OM) entrapped in calcite is regularly used for environmental studies; however, insertion mechanisms and types of interaction remain poorly understood. The present study used a new methodology to investigate interactions between OM and the calcite matrix during crystallization processes with humic acid (HA) entrapment. A multimethod approach confirmed that HA is both adsorbed onto the calcite surface and incorporated into the calcite lattice during crystallization. Our results also confirm the log-linear correlation between fluorescence intensity and calcite matrix HA concentration. Fourier transform infrared spectroscopy showed that HA in colloidal conformation is adsorbed onto the calcite surface as a result of the structure of the OH stretching band. We also developed a new method based on synchrotron analysis that uses sulfur as a tracer element for entrapped HA and that localizes the OM electrostatically adsorbed onto the calcite surface. Changes in the sulfur environment, determined using X-ray absorption near-edge structure spectroscopy, indicated more complex insertion mechanisms than simple adsorption of HA during calcite crystallization. Desorption experiments revealed the stability of the OM atomic structure and its layered nature. These results allowed us to draw up a general model of OM insertion in calcite.
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Valencia SH, Marín JM, Restrepo GM. Evolution of natural organic matter by size exclusion chromatography during photocatalytic degradation by solvothermal-synthesized titanium dioxide. JOURNAL OF HAZARDOUS MATERIALS 2012; 213-214:318-324. [PMID: 22370203 DOI: 10.1016/j.jhazmat.2012.02.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2011] [Revised: 01/27/2012] [Accepted: 02/01/2012] [Indexed: 05/31/2023]
Abstract
This study shows the effect of different titanium dioxides in transforming the structural properties of natural organic matter (NOM) during photocatalytic degradation with a solar UV light simulator. Titanium dioxide (TiO(2)) synthesized by the sol-gel method coupled with the solvothermal technique and Degussa P-25 TiO(2) were used. The evolution of NOM degradation was followed by size exclusion chromatography with dissolved organic carbon, ultraviolet and fluorescence detection (SEC-DOC, SEC-UV(254) and SEC-Fl(254/450)). For both catalysts, there was a preferential degradation of the larger molecules of NOM into medium and smaller molecular size fractions. However, the synthesized TiO(2) was found to be more efficient than Degussa P-25 TiO(2) for DOC removal, especially UV(254) absorption and Fl(254/450) removal.
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Affiliation(s)
- Sergio H Valencia
- Grupo Procesos Fisicoquímicos Aplicados, Universidad de Antioquia, Sede de Investigación Universitaria, cra. 53 # 61-30 Medellín, Colombia.
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Some theoretical and practical aspects in the separation of humic substances by combined liquid chromatography methods. J Chromatogr A 2011; 1218:8946-57. [PMID: 21788022 DOI: 10.1016/j.chroma.2011.06.107] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2011] [Revised: 06/27/2011] [Accepted: 06/28/2011] [Indexed: 11/24/2022]
Abstract
Permanent need to understand nature, structure and properties of humic substances influences also separation methods that are in a wide scope used for fractionation, characterization and analysis of humic substances (HS). At the first glance techniques based on size-exclusion phenomena are the most useful and utilized for relating elution data to the molecular mass distribution of HS, however, with some limitations and exceptions, respectively, in the structural investigation of HS. The second most abundant separation mechanism is reversed-phase based on weak hydrophobic interactions beneficially combined with the step gradients inducing distinct features in rather featureless analytical signal of HS. Relatively great effort is invested to the developments of immobilized-metal affinity chromatography mimicking chelate-forming properties of HS as ligands in the environment. Surprisingly, relatively less attention is given to the ion-ion interactions based ion-exchange chromatography of HS. Chromatographic separation methods play also an important role in the examination of interactions of HS with pesticides. They allow us to determine binding constants and the other data necessary to predict the mobility of chemical pollutants in the environment. HS is frequently adversely acting in analytical procedures as interfering substance, so more detailed information is desired on manifestation of its numerous properties in analytical procedures. The article topic is covered by the review emphasizing advances in the field done in the period of last 10 years from 2000 till 2010.
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Bakajová B, Ilčin M, Holá O, Kučerík J. Resistance of polyvinyl alcohol blends stabilized by sodium and ammonium salts of lignite humic acids against γ-irradiation. J Radioanal Nucl Chem 2010. [DOI: 10.1007/s10967-010-0700-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Liu W, Xu S, Xing B, Pan B, Tao S. Nonlinear binding of phenanthrene to the extracted fulvic acid fraction in soil in comparison with other organic matter fractions and to the whole soil sample. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2010; 158:566-575. [PMID: 19782450 DOI: 10.1016/j.envpol.2009.08.035] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2009] [Revised: 08/08/2009] [Accepted: 08/16/2009] [Indexed: 05/28/2023]
Abstract
Fractions of soil organic matter in a natural soil were extracted and sorption (or binding) characteristics of phenanthrene on each fraction and to the whole sample were investigated. The organic carbon normalized single point sorption (or binding) coefficient followed lipid > humin (HM) > humic acid (HA) > fulvic acid (FA) > whole soil sample, while the nonlinear exponent exhibited lipid > FA > HA > whole soil sample > HM. FA showed nonlinear binding of phenanthrene as it often does with other fractions. HM and HA contributed the majority of organic carbon in the soil. The calculated sorption coefficients of the whole soil were about two times greater than the measured values at different equilibrium phenanthrene concentrations. As for phenanthrene, the sorption capacity and nonlinearity of the physically mixed HA-HM mixtures were stronger as compared to the chemically reconstituted HA-HM composite. This was attributed to (besides the conditioning effect of the organic solvents) interactions between HA and HM and acid-base additions during fractionation.
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Affiliation(s)
- Wenxin Liu
- Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China.
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Canellas LP, Piccolo A, Dobbss LB, Spaccini R, Olivares FL, Zandonadi DB, Façanha AR. Chemical composition and bioactivity properties of size-fractions separated from a vermicompost humic acid. CHEMOSPHERE 2010; 78:457-66. [PMID: 19910019 DOI: 10.1016/j.chemosphere.2009.10.018] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2009] [Revised: 10/09/2009] [Accepted: 10/12/2009] [Indexed: 05/20/2023]
Abstract
Preparative high performance size-exclusion chromatography (HPSEC) was applied to humic acids (HA) extracted from vermicompost in order to separate humic matter of different molecular dimension and evaluate the relationship between chemical properties of size-fractions (SF) and their effects on plant root growth. Molecular dimensions of components in humic SF was further achieved by diffusion-ordered nuclear magnetic resonance spectroscopy (DOSY-NMR) based on diffusion coefficients (D), while carbon distribution was evaluated by solid state (CP/MAS) (13)C NMR. Seedlings of maize and Arabidopsis were treated with different concentrations of SF to evaluate root growth. Six different SF were obtained and their carbohydrate-like content and alkyl chain length decreased with decreasing molecular size. Progressive reduction of aromatic carbon was also observed with decreasing molecular size of separated fractions. Diffusion-ordered spectroscopy (DOSY) spectra showed that SF were composed of complex mixtures of aliphatic, aromatic and carbohydrates constituents that could be separated on the basis of their diffusion. All SF promoted root growth in Arabidopsis and maize seedlings but the effects differed according to molecular size and plant species. In Arabidopsis seedlings, the bulk HA and its SF revealed a classical large auxin-like exogenous response, i.e.: shortened the principal root axis and induced lateral roots, while the effects in maize corresponded to low auxin-like levels, as suggested by enhanced principal axis length and induction of lateral roots. The reduction of humic heterogeneity obtained in HPSEC separated size-fractions suggested that their physiological influence on root growth and architecture was less an effect of their size than their content of specific bioactive molecules. However, these molecules may be dynamically released from humic superstructures and exert their bioactivity when weaker is the humic conformational stability as that obtained in the separated size-fractions.
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Affiliation(s)
- Luciano P Canellas
- Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF) Núcleo de Desenvolvimento de Insumos Biológicos para Agricultura (NUDIBA) Av. Alberto Lamego 2000, Campos dos Goytacazes 28602-013, Brazil.
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Reuter T, Xu W, Alexander TW, Stanford K, Xu Y, McAllister TA. Purification of polymerase chain reaction (PCR)-amplifiable DNA from compost piles containing bovine mortalities. BIORESOURCE TECHNOLOGY 2009; 100:3343-3349. [PMID: 19303283 DOI: 10.1016/j.biortech.2009.01.069] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2008] [Revised: 01/12/2009] [Accepted: 01/20/2009] [Indexed: 05/27/2023]
Abstract
Livestock production systems utilize composting as a method of disposal of livestock mortalities, but there is limited information on the rate and extent of carcass decomposition. Detection of specific DNA fragments by PCR offers a method for investigating the degradation of carcasses and other biological materials during composting. However, the purity of extracted DNA is critical for successful PCR analysis. We applied a method to purify DNA from compost samples and have tested the method by analyzing bovine and plant DNA targets after 0, 4, and 12 month of composting. The concentration of organic matter from composted material posed a particular challenge in obtaining pure DNA for molecular analysis. Initially extracted DNA from composted piles at day 147 was discoloured, and PCR inhibitors prevented amplification of target plant or bovine gene fragments. Bovine serum albumin improved detection by PCR (25-50 microl final volume) through the removal of inhibitors, but only when concentrations of humic acids in extracted DNA were 1.0 ng microl(-1) or less. Optimal purification of DNA from compost was achieved by chromatography using Sepharose 4B columns. The described DNA purification protocol enabled molecular monitoring of otherwise cryptic bovine and plant target genes throughout the composting process. The assay could likely be used to obtain PCR-amplifiable DNA that could be used for the detection of microbial pathogens in compost.
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Affiliation(s)
- Tim Reuter
- Agriculture and Agri-Food Canada, Lethbridge Research Centre, Lethbridge, Alberta, Canada
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