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Shubo T, Maranhão AG, Ferreira FC, de Silva E Mouta Júnior S, de Pedrosa Macena LDG, do Rosário Vaz Morgado C, Warish A, Sidhu JPS, Miagostovich MP. Microbiological characterization of stormwater in a high-income neighborhood in Rio de Janeiro, Brazil. ENVIRONMENTAL MONITORING AND ASSESSMENT 2022; 194:51. [PMID: 34985601 DOI: 10.1007/s10661-021-09677-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Accepted: 12/06/2021] [Indexed: 06/14/2023]
Abstract
Stormwater harvesting and reuse in the urban environment is emerging as an alternative water source, despite human pathogens in the stormwater may represent a hazard to public health. This study presents the results of 1-year monitoring to evaluate the quality of stormwater obtained in a high-income neighborhood in Rio de Janeiro for a set of microbiological parameters as total coliforms, Escherichia coli (E. coli), human adenovirus (HAdV), human JC polyomavirus (JCPyV), Group A rotavirus (RVA), and norovirus GI and GII. Forty-eight stormwater samples obtained from two multiplex units presented total coliforms and E. coli in 91.7% (n = 44) and 58.3% (n = 28) of samples, while HAdV and JCPyV were detected in 20.8% (n = 10) and 12.5% (n = 6), respectively. Viral quantification ranged from 103 to 104 genomic copies/liter (GC/L) for HAdV and from 101 to 104 GC/L for JCPyV. Neither RVA nor norovirus GI and GII was detected. Fifteen out of sixteen (93.8%) samples containing viruses were compliant as per fecal indicator bacteria (FIB) according to Brazilian standards for rainwater reuse and US EPA Guidelines for Water Reuse, suggesting that viruses monitoring should complement the study of bacterial indicators.
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Affiliation(s)
- Tatsuo Shubo
- Environmental Engineering Program (PEA), Federal University of Rio de Janeiro, Rio de Janeiro, RJ, Brazil.
- Fundação Oswaldo Cruz, Av. Brazil, 4365, Manguinhos, Rio de Janeiro, RJ, 21040-360, Brazil.
| | - Adriana Gonçalves Maranhão
- Laboratory of Comparative and Environmental Virology, Oswaldo Cruz Institute (IOC), Oswaldo Cruz Foundation (FIOCRUZ), Rio de Janeiro, RJ, Brazil
| | - Fernando César Ferreira
- Laboratory of Comparative and Environmental Virology, Oswaldo Cruz Institute (IOC), Oswaldo Cruz Foundation (FIOCRUZ), Rio de Janeiro, RJ, Brazil
| | - Sérgio de Silva E Mouta Júnior
- Laboratory of Comparative and Environmental Virology, Oswaldo Cruz Institute (IOC), Oswaldo Cruz Foundation (FIOCRUZ), Rio de Janeiro, RJ, Brazil
| | - Lorena da Graça de Pedrosa Macena
- Laboratory of Comparative and Environmental Virology, Oswaldo Cruz Institute (IOC), Oswaldo Cruz Foundation (FIOCRUZ), Rio de Janeiro, RJ, Brazil
| | | | - Ahmed Warish
- Environmental Contaminant Mitigation & Biotechnologies (ECMB), Commonwealth Scientific and Industrial Research Organization (CSIRO), Brisbane, QLD, Australia
| | - Jatinder P S Sidhu
- Ecoscience Precinct, CSIRO Oceans and Atmosphere, 41 Boggo Road, Brisbane, 4102, Australia
| | - Marize Pereira Miagostovich
- Laboratory of Comparative and Environmental Virology, Oswaldo Cruz Institute (IOC), Oswaldo Cruz Foundation (FIOCRUZ), Rio de Janeiro, RJ, Brazil
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Capozza P, Martella V, Lanave G, Catella C, Diakoudi G, Beikpour F, Camero M, Di Martino B, Fusco G, Balestrieri A, Campanile G, Banyai K, Buonavoglia C. An outbreak of neonatal enteritis in buffalo calves associated with astrovirus. J Vet Sci 2021; 22:e84. [PMID: 34854267 PMCID: PMC8636656 DOI: 10.4142/jvs.2021.22.e84] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 08/31/2021] [Accepted: 09/08/2021] [Indexed: 12/18/2022] Open
Abstract
Background Enteritis of an infectious origin is a major cause of productivity and economic losses to cattle producers worldwide. Several pathogens are believed to cause or contribute to the development of calf diarrhea. Astroviruses (AstVs) are neglected enteric pathogens in ruminants, but they have recently gained attention because of their possible association with encephalitis in humans and various animal species, including cattle. Objectives This paper describes a large outbreak of neonatal diarrhea in buffalo calves (Bubalus bubalis), characterized by high mortality, which was associated with an AstV infection. Methods Following an enteritis outbreak characterized by high morbidity (100%) and mortality (46.2%) in a herd of Mediterranean buffaloes (B. bubalis) in Italy, 16 samples from buffalo calves were tested with the molecular tools for common and uncommon enteric pathogens, including AstV, kobuvirus, and torovirus. Results The samples tested negative for common enteric viral agents, including Rotavirus A, coronavirus, calicivirus, pestivirus, kobuvirus, and torovirus, while they tested positive for AstV. Overall, 62.5% (10/16) of the samples were positive in a single round reverse transcription polymerase chain reaction (PCR) assay for AstV, and 100% (16/16) were positive when nested PCR was performed. The strains identified in the outbreak showed a clonal origin and shared the closest genetic relationship with bovine AstVs (up to 85% amino acid identity in the capsid). Conclusions This report indicates that AstVs should be included in a differential diagnosis of infectious diarrhea in buffalo calves.
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Affiliation(s)
- Paolo Capozza
- Department of Veterinary Medicine, University of Bari, Valenzano 70010, Italy
| | - Vito Martella
- Department of Veterinary Medicine, University of Bari, Valenzano 70010, Italy
| | - Gianvito Lanave
- Department of Veterinary Medicine, University of Bari, Valenzano 70010, Italy.
| | - Cristiana Catella
- Department of Veterinary Medicine, University of Bari, Valenzano 70010, Italy
| | - Georgia Diakoudi
- Department of Veterinary Medicine, University of Bari, Valenzano 70010, Italy
| | - Farzad Beikpour
- Department of Veterinary Medicine, University of Bari, Valenzano 70010, Italy
| | - Michele Camero
- Department of Veterinary Medicine, University of Bari, Valenzano 70010, Italy
| | - Barbara Di Martino
- Faculty of Veterinary Medicine, University of Teramo, Teramo 64100, Italy
| | - Giovanna Fusco
- Istituto Zooprofilattico Sperimentale del Mezzogiorno, Portici 80055, Italy
| | - Anna Balestrieri
- Istituto Zooprofilattico Sperimentale del Mezzogiorno, Portici 80055, Italy
| | - Giuseppe Campanile
- Department of Veterinary Medicine and Animal Production, University of Naples, Naples 80137, Italy
| | - Krisztian Banyai
- Institute for Veterinary Medical Research, Centre for Agricultural Research, Budapest 1143, Hungary
| | - Canio Buonavoglia
- Department of Veterinary Medicine, University of Bari, Valenzano 70010, Italy
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Vitek R, do Nascimento FH, Masini JC. Polymer monoliths for the concentration of viruses from environmental waters: A review. J Sep Sci 2021; 45:134-148. [PMID: 34128332 DOI: 10.1002/jssc.202100282] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Revised: 06/09/2021] [Accepted: 06/10/2021] [Indexed: 12/13/2022]
Abstract
Even at low concentrations in environmental waters, some viruses are highly infective, making them a threat to human health. They are the leading cause of waterborne enteric diseases. In agriculture, plant viruses in irrigation and runoff water threat the crops. The low concentrations pose a challenge to early contamination detection. Thus, concentrating the virus particles into a small volume may be mandatory to achieve reliable detection in molecular techniques. This paper reviews the organic monoliths developments and their applications to concentrate virus particles from waters (waste, surface, tap, sea, and irrigation waters). Free-radical polymerization and polyaddition reactions are the most common strategies to prepare the monoliths currently used for virus concentration. Here, the routes for preparing and functionalizing both methacrylate and epoxy-based monoliths will be shortly described, following a revision of their retention mechanisms and applications in the concentration of enteric and plant viruses in several kinds of waters.
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Affiliation(s)
- Renan Vitek
- Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.,Instituto Federal de Educação Ciência e Tecnologia de Mato Grosso, Cuiabá, Brazil
| | - Fernando H do Nascimento
- Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil
| | - Jorge C Masini
- Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil
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Bačnik K, Kutnjak D, Pecman A, Mehle N, Tušek Žnidarič M, Gutiérrez Aguirre I, Ravnikar M. Viromics and infectivity analysis reveal the release of infective plant viruses from wastewater into the environment. WATER RESEARCH 2020; 177:115628. [PMID: 32299020 DOI: 10.1016/j.watres.2020.115628] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Revised: 02/13/2020] [Accepted: 02/14/2020] [Indexed: 05/06/2023]
Abstract
Viruses represent one of the most important threats to agriculture. Several viral families include highly stable pathogens, which remain infective and can be transported long distances in water. The diversity of plant viruses in wastewater remains understudied; however, their potential impact is increasing with the increased irrigation usage of reclaimed wastewater. To determine the abundance, diversity and biological relevance of plant viruses in wastewater influents and effluents we applied an optimized virus concentration method followed by high-throughput sequencing and infectivity assays. We detected representatives of 47 plant virus species, including emerging crop threats. We also demonstrated infectivity for pathogenic and economically relevant plant viruses from the genus Tobamovirus (family Virgaviridae), which remain infective even after conventional wastewater treatment. These results demonstrate the potential of metagenomics to capture the diversity of plant viruses circulating in the environment and expose the potential risk of the uncontrolled use of reclaimed water for irrigation.
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Affiliation(s)
- Katarina Bačnik
- National Institute of Biology, Department of Biotechnology and Systems Biology, Večna pot 111, 1000, Ljubljana, Slovenia; Jožef Stefan International Postgraduate School, Jamova cesta 39, 1000, Ljubljana, Slovenia
| | - Denis Kutnjak
- National Institute of Biology, Department of Biotechnology and Systems Biology, Večna pot 111, 1000, Ljubljana, Slovenia
| | - Anja Pecman
- National Institute of Biology, Department of Biotechnology and Systems Biology, Večna pot 111, 1000, Ljubljana, Slovenia; Jožef Stefan International Postgraduate School, Jamova cesta 39, 1000, Ljubljana, Slovenia
| | - Nataša Mehle
- National Institute of Biology, Department of Biotechnology and Systems Biology, Večna pot 111, 1000, Ljubljana, Slovenia
| | - Magda Tušek Žnidarič
- National Institute of Biology, Department of Biotechnology and Systems Biology, Večna pot 111, 1000, Ljubljana, Slovenia
| | - Ion Gutiérrez Aguirre
- National Institute of Biology, Department of Biotechnology and Systems Biology, Večna pot 111, 1000, Ljubljana, Slovenia
| | - Maja Ravnikar
- National Institute of Biology, Department of Biotechnology and Systems Biology, Večna pot 111, 1000, Ljubljana, Slovenia; University of Nova Gorica, Vipavska cesta, 5000, Nova Gorica, Slovenia.
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5
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Martella V, Catella C, Capozza P, Diakoudi G, Camero M, Lanave G, Galante D, Cafiero MA, Lavazza A, Bányai K, Buonavoglia C. Identification of astroviruses in bovine and buffalo calves with enteritis. Res Vet Sci 2020; 131:59-68. [PMID: 32304933 PMCID: PMC7195147 DOI: 10.1016/j.rvsc.2020.04.010] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2019] [Revised: 03/21/2020] [Accepted: 04/08/2020] [Indexed: 01/06/2023]
Abstract
Astroviruses (AstVs) have been identified in the stools of calves with enteritis and in the brain tissues of bovines with encephalitis but their pathogenic role has not been clarified. In this study, we report the detection and characterization of bovine and water buffalo AstV strains identified in young bovine and buffalo calves with enteritis in Italy between 2012 and 2015. By negative staining transmission electron microscopy (TEM) observation, AstV-like particles were identified in the stools of the animals and AstV RNA was confirmed molecularly. The sequence (~3.2-kb) at the 3′ end of the genome was determined for two bovine and two buffalo AstVs. Sequence and phylogenetic analysis on the partial ORF1b and full-length ORF2 revealed a marked genetic diversity although the viruses were distantly related to other AstV identified from ruminants. Gathering sequence information on ruminant AstVs is important to understand the extent of inter-species circulation and for the development of reliable, specific diagnostic tools. Astroviruses in ruminants are neglected enteric viruses. Recently, neurotropic strains have been identified in ruminants. Astrovirus was detected in outbreaks of enteritis in cattle and buffalo in Italy. Genome sequencing of the viruses unveiled marked genetic diversity. Implementing the diagnostics is pivotal to conceive surveillance studies.
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Affiliation(s)
- Vito Martella
- Department of Veterinary Medicine, University Aldo Moro of Bari, Valenzano, Italy.
| | - Cristiana Catella
- Department of Veterinary Medicine, University Aldo Moro of Bari, Valenzano, Italy
| | - Paolo Capozza
- Department of Veterinary Medicine, University Aldo Moro of Bari, Valenzano, Italy
| | - Georgia Diakoudi
- Department of Veterinary Medicine, University Aldo Moro of Bari, Valenzano, Italy
| | - Michele Camero
- Department of Veterinary Medicine, University Aldo Moro of Bari, Valenzano, Italy
| | - Gianvito Lanave
- Department of Veterinary Medicine, University Aldo Moro of Bari, Valenzano, Italy
| | - Domenico Galante
- Zooprophylactic Institute of Puglia and Basilicata (IZS PB), Foggia, Italy
| | | | - Antonio Lavazza
- Zooprophylactic Institute of Lombardia and Emilia Romagna (IZS LER), Brescia, Italy
| | - Krisztián Bányai
- Institute for Veterinary Medical Research, Centre for Agricultural Research, Budapest, Hungary
| | - Canio Buonavoglia
- Department of Veterinary Medicine, University Aldo Moro of Bari, Valenzano, Italy
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Abstract
Viruses represent the most abundant and diverse of the biological entities in environmental waters, including the seas and probably also freshwater systems. They are important players in ecological networks in waters and influence global biochemical cycling and community composition dynamics. Among the many diverse viruses from terrestrial environments found in environmental waters, some are plant, animal, and/or human pathogens. The majority of pathogenic viral species found in waters are very stable and can survive outside host cells for long periods. The occurrence of such viruses in environmental waters has raised concerns because of the confirmation of the infectivity of waterborne viruses even at very low concentrations. This chapter focuses mainly on the survival of human, animal, and plant pathogenic viruses in aqueous environments, the possibility of their water-mediated transmission, the ecological implications of viruses in water, the methods adapted for detecting such viruses, and how to minimize the risk of viruses spreading through water.
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Gutiérrez-Aguirre I, Kutnjak D, Rački N, Rupar M, Ravnikar M. Monolith Chromatography as Sample Preparation Step in Virome Studies of Water Samples. Methods Mol Biol 2018; 1746:63-75. [PMID: 29492887 DOI: 10.1007/978-1-4939-7683-6_6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Viruses exist in aquatic media and many of them use this media as transmission route. Next-generation sequencing (NGS) technologies have opened new doors in virus research, allowing also to reveal a hidden diversity of viral species in aquatic environments. Not surprisingly, many of the newly discovered viruses are found in environmental fresh and marine waters. One of the problems in virome research can be the low amount of viral nucleic acids present in the sample in contrast to the background ones (host, eukaryotic, prokaryotic, environmental). Therefore, virus enrichment prior to NGS is necessary in many cases. In water samples, an added problem resides in the low concentration of viruses typically present in aquatic media. Different concentration strategies have been used to overcome such limitations. CIM monoliths are a new generation of chromatographic supports that due to their particular structural characteristics are very efficient in concentration and purification of viruses. In this chapter, we describe the use of CIM monolithic chromatography for sample preparation step in NGS studies targeting viruses in fresh or marine water. The step-by-step protocol will include a case study where CIM concentration was used to study the virome of a wastewater sample using NGS.
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Affiliation(s)
- Ion Gutiérrez-Aguirre
- Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
| | - Denis Kutnjak
- Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia
| | - Nejc Rački
- Lek Pharmaceuticals d.d., Menges, Slovenia
| | | | - Maja Ravnikar
- Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia
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8
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Krajacic M, Ravnikar M, Štrancar A, Gutiérrez-Aguirre I. Application of monolithic chromatographic supports in virus research. Electrophoresis 2017; 38:2827-2836. [DOI: 10.1002/elps.201700152] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2017] [Revised: 04/28/2017] [Accepted: 05/03/2017] [Indexed: 11/05/2022]
Affiliation(s)
- Mladen Krajacic
- Department of Biology; Faculty of Science; University of Zagreb; Zagreb Croatia
| | - Maja Ravnikar
- Department of Biotechnology and Systems Biology; National Institute of Biology; Ljubljana Slovenia
| | | | - Ion Gutiérrez-Aguirre
- Department of Biotechnology and Systems Biology; National Institute of Biology; Ljubljana Slovenia
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9
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Balasubramanian MN, Rački N, Gonçalves J, Kovač K, Žnidarič MT, Turk V, Ravnikar M, Gutiérrez-Aguirre I. Enhanced detection of pathogenic enteric viruses in coastal marine environment by concentration using methacrylate monolithic chromatographic supports paired with quantitative PCR. WATER RESEARCH 2016; 106:405-414. [PMID: 27750129 DOI: 10.1016/j.watres.2016.10.020] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2016] [Revised: 10/06/2016] [Accepted: 10/07/2016] [Indexed: 06/06/2023]
Abstract
Currently, around 50% of the world's population lives in towns and cities within 100 km of the coast. Monitoring of viruses that are frequently present in contaminated coastal environments, such as rotavirus (RoV) and norovirus (NoV), which are also the major cause of human viral gastroenteritis, is essential to ensure the safe use of these water bodies. Since exposure to as few as 10-100 particles of RoV or NoV may induce gastrointestinal disease, there is a need to develop a rapid and sensitive diagnostic method for their detection in coastal water samples. In this study, we evaluate the application of methacrylate monolithic chromatographic columns, commercially available as convective interaction media (CIM®), to concentrate pathogenic enteric viruses from saline water samples prior to virus quantification by one-step reverse transcription quantitative PCR (RT-qPCR). Using RoV and NoV as model enteric viruses, we present our results on the most effective viral concentration conditions from saline water matrices using butyl (C4) hydrophobic interaction monolithic support (CIM® C4). C4 monolithic columns exhibit a good capacity to bind both RoV and NoV and both viruses can be eluted in a single step. Our protocol using a 1 ml C4 column enables processing of 400 ml saline water samples in less than 60 min and increases the sensitivity of RoV and NoV detection by approximately 50-fold and 10-fold respectively. The protocol was also scaled up using larger capacity 8 ml C4 columns to process 4000 ml of seawater samples with concentration factors of 300-fold for RoV and 40-fold for NoV, without any significant increase in processing time. Furthermore, C4 monolithic columns were adapted for field use in an on-site application of RoV concentration from seawater samples with performance equivalent to that of the reference laboratory setup. Overall, the results from successful deployment of CIM C4 columns for concentration of rotavirus and norovirus in seawater samples reiterate the utility of monolithic supports as efficient, scalable and modular preparative tools for processing environmental water samples to enhance viral detection using molecular methods.
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Affiliation(s)
| | - Nejc Rački
- Department of Biotechnology and Systems Biology, National Institute of Biology, Večna Pot 111, SI-1000, Ljubljana, Slovenia.
| | - José Gonçalves
- Marine Biology Station, National Institute of Biology, Fornače 41, SI-6330, Piran, Slovenia.
| | - Katarina Kovač
- BioSistemika LLC, Koprska 98, SI-1000, Ljubljana, Slovenia.
| | - Magda T Žnidarič
- Department of Biotechnology and Systems Biology, National Institute of Biology, Večna Pot 111, SI-1000, Ljubljana, Slovenia.
| | - Valentina Turk
- Marine Biology Station, National Institute of Biology, Fornače 41, SI-6330, Piran, Slovenia.
| | - Maja Ravnikar
- Department of Biotechnology and Systems Biology, National Institute of Biology, Večna Pot 111, SI-1000, Ljubljana, Slovenia.
| | - Ion Gutiérrez-Aguirre
- Department of Biotechnology and Systems Biology, National Institute of Biology, Večna Pot 111, SI-1000, Ljubljana, Slovenia.
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Acquah C, Moy CKS, Danquah MK, Ongkudon CM. Development and characteristics of polymer monoliths for advanced LC bioscreening applications: A review. J Chromatogr B Analyt Technol Biomed Life Sci 2016; 1015-1016:121-134. [PMID: 26919447 DOI: 10.1016/j.jchromb.2016.02.016] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2015] [Revised: 02/13/2016] [Accepted: 02/13/2016] [Indexed: 01/05/2023]
Abstract
Biomedical research advances over the past two decades in bioseparation science and engineering have led to the development of new adsorbent systems called monoliths, mostly as stationary supports for liquid chromatography (LC) applications. They are acknowledged to offer better mass transfer hydrodynamics than their particulate counterparts. Also, their architectural and morphological traits can be tailored in situ to meet the hydrodynamic size of molecules which include proteins, pDNA, cells and viral targets. This has enabled their development for a plethora of enhanced bioscreening applications including biosensing, biomolecular purification, concentration and separation, achieved through the introduction of specific functional moieties or ligands (such as triethylamine, N,N-dimethyl-N-dodecylamine, antibodies, enzymes and aptamers) into the molecular architecture of monoliths. Notwithstanding, the application of monoliths presents major material and bioprocess challenges. The relationship between in-process polymerisation characteristics and the physicochemical properties of monolith is critical to optimise chromatographic performance. There is also a need to develop theoretical models for non-invasive analyses and predictions. This review article therefore discusses in-process analytical conditions, functionalisation chemistries and ligands relevant to establish the characteristics of monoliths in order to facilitate a wide range of enhanced bioscreening applications. It gives emphasis to the development of functional polymethacrylate monoliths for microfluidic and preparative scale bio-applications.
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Affiliation(s)
- Caleb Acquah
- Curtin Sarawak Research Institute, Curtin University, Sarawak 98009, Malaysia; Department of Chemical Engineering, Curtin University, Sarawak 98009, Malaysia
| | - Charles K S Moy
- Department of Civil Engineering, Xi'an Jiaotong-Liverpool University, Jiangsu 215123, China
| | - Michael K Danquah
- Curtin Sarawak Research Institute, Curtin University, Sarawak 98009, Malaysia; Department of Chemical Engineering, Curtin University, Sarawak 98009, Malaysia.
| | - Clarence M Ongkudon
- Biotechnology Research Institute, Universiti Malaysia Sabah, Kota Kinabalu, Sabah 88400, Malaysia
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Herigstad MO, Dimartino S, Boi C, Sarti. GC. Experimental characterization of the transport phenomena, adsorption, and elution in a protein A affinity monolithic medium. J Chromatogr A 2015; 1407:130-8. [DOI: 10.1016/j.chroma.2015.06.045] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2015] [Revised: 06/11/2015] [Accepted: 06/15/2015] [Indexed: 11/26/2022]
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12
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Preparation of pure, high titer, pseudoinfectious Flavivirus particles by hollow fiber tangential flow filtration and anion exchange chromatography. Vaccine 2015; 33:4255-60. [DOI: 10.1016/j.vaccine.2014.09.074] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2014] [Accepted: 09/26/2014] [Indexed: 11/23/2022]
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13
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Ruščić J, Gutiérrez-Aguirre I, Tušek Žnidarič M, Kolundžija S, Slana A, Barut M, Ravnikar M, Krajačić M. A new application of monolithic supports: The separation of viruses from one another. J Chromatogr A 2015; 1388:69-78. [DOI: 10.1016/j.chroma.2015.01.097] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2014] [Revised: 01/30/2015] [Accepted: 01/30/2015] [Indexed: 11/29/2022]
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14
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Steyer A, Gutiérrez-Aguirre I, Rački N, Beigot Glaser S, Brajer Humar B, Stražar M, Škrjanc I, Poljšak-Prijatelj M, Ravnikar M, Rupnik M. The Detection Rate of Enteric Viruses and Clostridium difficile in a Waste Water Treatment Plant Effluent. FOOD AND ENVIRONMENTAL VIROLOGY 2015; 7:164-172. [PMID: 25663146 DOI: 10.1007/s12560-015-9183-7] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2014] [Accepted: 01/30/2015] [Indexed: 06/04/2023]
Abstract
Waste water treatment plant (WWTP) is considered as an important source of surface water contamination by enteric pathogens. In this study, we describe the occurrence of enteric viruses (group A rotaviruses, noroviruses, astroviruses, sapoviruses, hepatitis A virus, and hepatitis E virus) and Clostridium difficile in the effluent of a wastewater treatment plant during a 1-year period. Enteric viruses were simultaneously and efficiently concentrated in a single step using methacrylate monolithic chromatographic support. Rotaviruses, noroviruses (genogroup I and II), and sapoviruses were detected in all 12 concentrated samples, whereas astroviruses were not detected in August and September and hepatitis A and E viruses were not detected at all. Clostridium difficile was detected in all samples and altogether 121 strains were isolated and grouped into 32 different ribotypes of which 014/020 and 010 were most prevalent. Pathogens detected in WWTP effluent partially reflect the epidemiological situation of enteric viruses and C. difficile in human population and open the discussion on implementation of possible techniques for virus and bacteria removal from WWTP effluent prior to release into the surface water system.
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Affiliation(s)
- Andrej Steyer
- Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Zaloška 4, 1000, Ljubljana, Slovenia,
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Rački N, Kramberger P, Steyer A, Gašperšič J, Štrancar A, Ravnikar M, Gutierrez-Aguirre I. Methacrylate monolith chromatography as a tool for waterborne virus removal. J Chromatogr A 2015; 1381:118-24. [DOI: 10.1016/j.chroma.2015.01.003] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2014] [Revised: 12/12/2014] [Accepted: 01/01/2015] [Indexed: 02/07/2023]
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16
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Kramberger P, Urbas L, Štrancar A. Downstream processing and chromatography based analytical methods for production of vaccines, gene therapy vectors, and bacteriophages. Hum Vaccin Immunother 2015; 11:1010-21. [PMID: 25751122 PMCID: PMC4514237 DOI: 10.1080/21645515.2015.1009817] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2014] [Accepted: 12/25/2014] [Indexed: 10/23/2022] Open
Abstract
Downstream processing of nanoplexes (viruses, virus-like particles, bacteriophages) is characterized by complexity of the starting material, number of purification methods to choose from, regulations that are setting the frame for the final product and analytical methods for upstream and downstream monitoring. This review gives an overview on the nanoplex downstream challenges and chromatography based analytical methods for efficient monitoring of the nanoplex production.
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17
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Svec F, Lv Y. Advances and Recent Trends in the Field of Monolithic Columns for Chromatography. Anal Chem 2014; 87:250-73. [DOI: 10.1021/ac504059c] [Citation(s) in RCA: 279] [Impact Index Per Article: 27.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Frantisek Svec
- International
Research Center
for Soft Matter, Beijing University of Chemical Technology, 100029 Beijing, China
| | - Yongqin Lv
- International
Research Center
for Soft Matter, Beijing University of Chemical Technology, 100029 Beijing, China
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18
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Survival and transmission of potato virus Y, pepino mosaic virus, and potato spindle tuber viroid in water. Appl Environ Microbiol 2013; 80:1455-62. [PMID: 24334672 DOI: 10.1128/aem.03349-13] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
Hydroponic systems and intensive irrigation are used widely in horticulture and thus have the potential for rapid spread of water-transmissible plant pathogens. Numerous plant viruses have been reported to occur in aqueous environments, although information on their survival and transmission is minimal, due mainly to the lack of effective detection methods and to the complexity of the required transmission experiments. We have assessed the role of water as a source of plant infection using three mechanically transmissible plant pathogens that constitute a serious threat to tomato and potato production: pepino mosaic virus (PepMV), potato virus Y (PVY), and potato spindle tuber viroid (PSTVd). PepMV remains infectious in water at 20 ± 4°C for up to 3 weeks, PVY (NTN strain) for up to 1 week, and PSTVd for up to 7 weeks. Experiments using a hydroponic system show that PepMV (Ch2 genotype) and PVY (NTN strain) can be released from plant roots into the nutrient solution and can infect healthy plants through their roots, ultimately spreading to the green parts, where they can be detected after a few months. In addition, tubers developed on plants grown in substrate watered with PSTVd-infested water were confirmed to be the source of viroid infection. Our data indicate that although well-known pathways of virus spread are more rapid than water-mediated infection, like insect or mechanical transmission through leaves, water is a route that provides a significant bridge for rapid virus/viroid spread. Consequently, water should be taken into account in future epidemiology and risk assessment studies.
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19
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Gerster P, Kopecky EM, Hammerschmidt N, Klausberger M, Krammer F, Grabherr R, Mersich C, Urbas L, Kramberger P, Paril T, Schreiner M, Nöbauer K, Razzazi-Fazeli E, Jungbauer A. Purification of infective baculoviruses by monoliths. J Chromatogr A 2013; 1290:36-45. [DOI: 10.1016/j.chroma.2013.03.047] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2013] [Revised: 03/13/2013] [Accepted: 03/15/2013] [Indexed: 10/27/2022]
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20
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Zitka O, Skalickova S, Krizkova S, Vlkova M, Adam V, Kizek R. Separation of Lactoferrin from Human Saliva Using Monolithic Disc. Chromatographia 2013. [DOI: 10.1007/s10337-013-2459-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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21
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Fast purification of the filamentous Potato virus Y using monolithic chromatographic supports. J Chromatogr A 2013; 1272:33-40. [DOI: 10.1016/j.chroma.2012.11.058] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2012] [Revised: 11/14/2012] [Accepted: 11/21/2012] [Indexed: 11/22/2022]
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22
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Ruščić J, Gutiérrez-Aguirre I, Urbas L, Kramberger P, Mehle N, Škorić D, Barut M, Ravnikar M, Krajačić M. A novel application of methacrylate based short monolithic columns: concentrating Potato spindle tuber viroid from water samples. J Chromatogr A 2012; 1274:129-36. [PMID: 23298847 DOI: 10.1016/j.chroma.2012.12.014] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2012] [Revised: 12/01/2012] [Accepted: 12/07/2012] [Indexed: 11/25/2022]
Abstract
Potato spindle tuber viroid (PSTVd) is the causal agent of a number of agriculturally important diseases. It is a single-stranded, circular and unencapsidated RNA molecule with only 356-360 nucleotides and no coding capacity. Because of its peculiar structural features, it is very stable ex vivo and it is easily transmitted mechanically by contaminated hands, tools, machinery, etc. In this work, we describe the development and optimization of a method for concentrating PSTVd using Convective Interaction Media (CIM) monolithic columns. The ion-exchange chromatography on diethylamine (DEAE) monolithic analytical column (CIMac DEAE-0.1 mL) resulted in up to 30% PSTVd recovery whilst the hydrophobic interaction chromatography on C4 monolithic analytical column (CIMac C4-0.1 mL) improved it up to 60%. This was due to the fact that the binding of the viroid to the C4 matrix was less strong than to the highly charged anion-exchange matrix and could be easier and more completely eluted under the applied chromatographic conditions. Based on these preliminary results, a C4 HLD-1 (High Ligand Density) 1 mL monolithic tube column was selected for further experiments. One-litre-water samples were mixed with different viroid quantities and loaded onto the column. By using reverse transcription quantitative polymerase chain reaction (RT-qPCR), the viroid RNA was quantified in the elution fraction (≈5 mL) indicating that 70% of the viroid was recovered and concentrated by at least two orders of magnitude. This approach will be helpful in screening irrigation waters and/or hydroponic systems' nutrient solutions for the presence of even extremely low concentrations of PSTVd.
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Affiliation(s)
- Jelena Ruščić
- University of Zagreb, Faculty of Science, Department of Biology, Rooseveltov trg 6, 10000 Zagreb, Croatia
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23
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Liu K, Wen Z, Li N, Yang W, Hu L, Wang J, Yin Z, Dong X, Li J. Purification and concentration of mycobacteriophage D29 using monolithic chromatographic columns. J Virol Methods 2012; 186:7-13. [DOI: 10.1016/j.jviromet.2012.07.016] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2012] [Revised: 07/10/2012] [Accepted: 07/11/2012] [Indexed: 11/16/2022]
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24
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Milačič R, Ajlec D, Zuliani T, Žigon D, Ščančar J. Determination of Zn-citrate in human milk by CIM monolithic chromatography with atomic and mass spectrometry detection. Talanta 2012; 101:203-10. [DOI: 10.1016/j.talanta.2012.09.002] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2012] [Revised: 08/30/2012] [Accepted: 09/03/2012] [Indexed: 11/16/2022]
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25
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Podgornik A, Krajnc NL. Application of monoliths for bioparticle isolation. J Sep Sci 2012; 35:3059-72. [DOI: 10.1002/jssc.201200387] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2012] [Revised: 06/19/2012] [Accepted: 07/16/2012] [Indexed: 11/07/2022]
Affiliation(s)
- Aleš Podgornik
- The Centre of Excellence for Biosensors, Instrumentation and Process Control - COBIK; Solkan Slovenia
- BIA Separations d.o.o.; Ajdovščina Slovenia
| | - Nika Lendero Krajnc
- BIA Separations d.o.o.; Ajdovščina Slovenia
- The Centre of Excellence for Biosensors, Instrumentation and Process Control - COBIK; Solkan Slovenia
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26
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Mehle N, Ravnikar M. Plant viruses in aqueous environment - survival, water mediated transmission and detection. WATER RESEARCH 2012; 46:4902-17. [PMID: 22871317 DOI: 10.1016/j.watres.2012.07.027] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2012] [Revised: 07/12/2012] [Accepted: 07/15/2012] [Indexed: 05/09/2023]
Abstract
The presence of plant viruses outside their plant host or insect vectors has not been studied intensively. This is due, in part, to the lack of effective detection methods that would enable their detection in difficult matrixes and in low titres, and support the search for unknown viruses. Recently, new and sensitive methods for detecting viruses have resulted in a deeper insight into plant virus movement through, and transmission between, plants. In this review, we have focused on plant viruses found in environmental waters and their detection. Infectious plant pathogenic viruses from at least 7 different genera have been found in aqueous environment. The majority of the plant pathogenic viruses so far recovered from environmental waters are very stable, they can infect plants via the roots without the aid of a vector and often have a wide host range. The release of such viruses from plants can lead to their dissemination in streams, lakes, and rivers, thereby ensuring the long-distance spread of viruses that otherwise, under natural conditions, would remain restricted to limited areas. The possible sources and survival of plant viruses in waters are therefore discussed. Due to the widespread use of hydroponic systems and intensive irrigation in horticulture, the review is focused on the possibility and importance of spreading viral infection by water, together with measures for preventing the spread of viruses. The development of new methods for detecting multiple plant viruses at the same time, like microarrays or new generation sequencing, will facilitate the monitoring of environmental waters and waters used for irrigation and in hydroponic systems. It is reasonable to expect that the list of plant viruses found in waters will thereby be expanded considerably. This will emphasize the need for further studies to determine the biological significance of water-mediated transport.
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Affiliation(s)
- Nataša Mehle
- National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia
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27
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He X, Wei Y, Cheng L, Zhang D, Wang Z. Molecular detection of three gastroenteritis viruses in urban surface waters in Beijing and correlation with levels of fecal indicator bacteria. ENVIRONMENTAL MONITORING AND ASSESSMENT 2012; 184:5563-5570. [PMID: 21915594 DOI: 10.1007/s10661-011-2362-6] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2011] [Accepted: 08/30/2011] [Indexed: 05/31/2023]
Abstract
To assess the presence of three gastroenteritis viruses responsible for human acute gastroenteritis in surface water, a 1-year study was carried out in the city of Beijing, China. A total of 108 urban surface water samples were collected from nine collection sites which were defined with a global positioning system in rivers or lakes from September 2006 to August 2007. The water samples were subjected to virus concentration using an HA electronegative filter, followed by polymerase chain reaction (PCR) for rotavirus (RV) astrovirus (AV), and norovirus (NV). It showed that the number of viruses detected in water samples from different sites was variable, totaling 63 virus strains, with rotavirus (48.1%) verified as the most prevalent detected, followed by astrovirus (AV, 5.6%), and norovirus (NV, 4.6%). RV was also quantified by real-time PCR and the concentration of RV ranged from 0 to 18.27 genome copies·L(-1). And the distributions of RV in surface water were abundant in cold weather (from September to February) while less prevailing in warm weather (from March to August). The high detection rate of RV we encountered in this study provided convincing evidence that RV circulated at a certain frequency in the Beijing population. There was no statistically significant correlation between RV levels and both fecal coliform (R (2) = 0.02) and Enterococcus faecalis (R (2) = 0.02) densities. Our study suggests prolonged virus persistence in aquatic environments and emphasizes the enteric virus group as the most reliable for environmental monitoring.
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Affiliation(s)
- Xiaoqing He
- School of Biological Sciences and Technology, Beijing Forestry University, Qinghua East Rd 35, Haidian District, P. O. Box 162, Beijing 100083, China.
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28
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Prata C, Ribeiro A, Cunha Â, Gomes NCM, Almeida A. Ultracentrifugation as a direct method to concentrate viruses in environmental waters: virus-like particle enumeration as a new approach to determine the efficiency of recovery. ACTA ACUST UNITED AC 2012; 14:64-70. [DOI: 10.1039/c1em10603a] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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29
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Vicente T, Mota JP, Peixoto C, Alves PM, Carrondo MJ. Rational design and optimization of downstream processes of virus particles for biopharmaceutical applications: Current advances. Biotechnol Adv 2011; 29:869-78. [DOI: 10.1016/j.biotechadv.2011.07.004] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2010] [Revised: 07/07/2011] [Accepted: 07/11/2011] [Indexed: 12/11/2022]
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30
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Concentration and purification of rubella virus using monolithic chromatographic support. J Chromatogr B Analyt Technol Biomed Life Sci 2011; 879:981-6. [DOI: 10.1016/j.jchromb.2011.03.012] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2010] [Revised: 02/22/2011] [Accepted: 03/06/2011] [Indexed: 11/19/2022]
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31
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Urbas L, Košir B, Peterka M, Pihlar B, Štrancar A, Barut M. Reversed phase monolithic analytical columns for the determination of HA1 subunit of influenza virus haemagglutinin. J Chromatogr A 2011; 1218:2432-7. [DOI: 10.1016/j.chroma.2010.12.082] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2010] [Revised: 12/14/2010] [Accepted: 12/18/2010] [Indexed: 11/16/2022]
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32
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Nordborg A, Hilder EF, Haddad PR. Monolithic phases for ion chromatography. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2011; 4:197-226. [PMID: 21689046 DOI: 10.1146/annurev-anchem-061010-113929] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Monolithic media are continuing to increase in popularity in chromatographic applications, and the ongoing use of commercially available materials in ion chromatography (IC) has made monoliths a viable alternative to packed-bed columns for routine use. We discuss different strategies for the synthesis of polymeric and silica monoliths with ion-exchange functionality, such as direct incorporation of ion-exchange functionality during monolith preparation and different postpolymerization alterations such as grafting and coating. The formulations and strategies presented are focused on materials intended for use in IC. We also discuss strategies for materials characterization, with emphasis on nondestructive techniques for the characterization of monolith surface functionality, especially those with applicability to in situ analysis. Finally, we describe selected IC applications of polymeric and silica monoliths published from 2008 to 2010.
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Affiliation(s)
- Anna Nordborg
- Australian Center for Research on Separation Science, School of Chemistry, University of Tasmania, Hobart, Tasmania 7001, Australia.
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33
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Gutiérrez-Aguirre I, Steyer A, Banjac M, Kramberger P, Poljšak-Prijatelj M, Ravnikar M. On-site reverse transcription-quantitative polymerase chain reaction detection of rotaviruses concentrated from environmental water samples using methacrylate monolithic supports. J Chromatogr A 2010; 1218:2368-73. [PMID: 21040925 DOI: 10.1016/j.chroma.2010.10.048] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2010] [Revised: 10/01/2010] [Accepted: 10/12/2010] [Indexed: 11/25/2022]
Abstract
Rotaviruses are the leading cause of gastroenteritis in children and they exist widely in water environments. Ingestion of 10-100 viral particles is enough to initiate disease, what calls for extremely sensitive detection methods. In this study we have confirmed the validity of a recently published method for rotavirus concentration and detection based on the combination of methacrylate monoliths and real-time reverse transcription-quantitative PCR (RT-qPCR). The method was used to concentrate rotaviruses from different tap water and environmental water samples collected in Slovenia within years 2007 and 2009. The performance of virus concentration using monolithic supports was improved in comparison to the one of tangential ultrafiltration upon application of both methods on a range of environmental samples. Several samples were successfully concentrated on-site after successful adaptation of the method to field requirements. In such on-site format, the combination of concentration using CIM and detection using RT-qPCR detected as low as 30 rotavirus particles/ml, spiked in an environmental water sample.
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Affiliation(s)
- Ion Gutiérrez-Aguirre
- Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
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34
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Bosch A, Sánchez G, Abbaszadegan M, Carducci A, Guix S, Le Guyader FS, Netshikweta R, Pintó RM, van der Poel WHM, Rutjes S, Sano D, Taylor MB, van Zyl WB, Rodríguez-Lázaro D, Kovač K, Sellwood J. Analytical Methods for Virus Detection in Water and Food. FOOD ANAL METHOD 2010. [DOI: 10.1007/s12161-010-9161-5] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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35
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Kramberger P, Honour RC, Herman RE, Smrekar F, Peterka M. Purification of the Staphylococcus aureus bacteriophages VDX-10 on methacrylate monoliths. J Virol Methods 2010; 166:60-4. [DOI: 10.1016/j.jviromet.2010.02.020] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2009] [Revised: 02/11/2010] [Accepted: 02/18/2010] [Indexed: 10/19/2022]
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36
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Kovac K, Gutiérrez-Aguirre I, Banjac M, Peterka M, Poljsak-Prijatelj M, Ravnikar M, Mijovski JZ, Schultz AC, Raspor P. A novel method for concentrating hepatitis A virus and caliciviruses from bottled water. J Virol Methods 2009; 162:272-5. [PMID: 19646482 DOI: 10.1016/j.jviromet.2009.07.013] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2009] [Revised: 07/13/2009] [Accepted: 07/21/2009] [Indexed: 11/24/2022]
Abstract
Human enteric viruses are detected frequently in various types of environmental water samples, such as irrigation water, wastewater, recreational water, ground or subsurface water and even drinking water, constituting a primary source of gastroenteritis or hepatitis outbreaks. Only a few, but still infective number of viral particles are normally present in water samples, therefore an efficient virus concentration procedure is essential prior to molecular detection of the viral nucleic acid. In this study, a novel chromatographic technology, Convective Interaction Media (CIM) monolithic supports, were optimized and applied to the concentration of hepatitis A virus (HAV) and feline calicivirus (FCV), a surrogate of norovirus (NoV), from water samples. Two-step real-time RT-qPCR was used for quantitation of the virus concentration in the chromatographic fractions. Positively charged CIM QA (quaternary amine) monolithic columns were used for binding of HAV and FCV present in previously inoculated 1.5 l bottled water samples. Column bound viruses were eluted from the monolith using 1M NaCl to a final volume of 15 ml. Elution volume was concentrated further by ultracentrifugation. When the CIM/ultracentrifugation method was compared with another concentration method employing positively charged membranes and ultrafiltration, the recovery of HAV was improved by approximately 20%.
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Affiliation(s)
- Katarina Kovac
- Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, SI-1000 Ljubljana, Slovenia.
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