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Ballweg T, Liu M, Grimm J, Sedghamiz E, Wenzel W, Franzreb M. All-atom modeling of methacrylate-based multi-modal chromatography resins for Langmuir constant prediction of peptides. J Chromatogr A 2024; 1730:465089. [PMID: 38879977 DOI: 10.1016/j.chroma.2024.465089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Revised: 06/11/2024] [Accepted: 06/12/2024] [Indexed: 06/18/2024]
Abstract
In downstream processing, the intricate nature of the interactions between biomolecules and adsorbent materials presents a significant challenge in the prediction of their binding and elution behaviors. This complexity is further heightened in multi-modal chromatography (MMC), which employs two distinct binding mechanisms. To gain a deeper understanding of the involved interactions, simulating the adsorption of biomolecules on resin surfaces is a focal point of ongoing research. However, previous studies often simplified the adsorbent surface, modeling it as a flat or slightly curved plane without including a realistic backbone structure. Here, we introduce and validate two novel workflows aimed at predicting peptide binding behaviors in MMC, specifically targeting methacrylate-based resins. Our first achievement was the development of an all-atom model of a commercial MMC resin surface, incorporating its polymethacrylic backbone. Furthermore, we established and tested a workflow for rapid calculations of binding free energies (ΔG) with 10 linear peptides as target molecules. These ΔG calculations were effectively used to predict Langmuir constants, achieving a high coefficient of determination (R²) of 0.96. In subsequent benchmarking tests, our model outperformed established, simpler resin surface models in terms of predictive capabilities.
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Affiliation(s)
- Tim Ballweg
- Institute of Functional Interfaces, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen 76344, Germany
| | - Modan Liu
- Institute of Functional Interfaces, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen 76344, Germany
| | - Julian Grimm
- Institute of Functional Interfaces, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen 76344, Germany
| | - Elaheh Sedghamiz
- Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen 76344, Germany; Schrödinger, GmbH, Glücksteinallee 25, Mannheim 68163, Germany
| | - Wolfgang Wenzel
- Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen 76344, Germany
| | - Matthias Franzreb
- Institute of Functional Interfaces, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen 76344, Germany.
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2
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Zhang D, Wickramasinghe SR, Zydney AL, Smelko JP, Loman A, Wheeler A, Qian X. Proteomic analysis of host cell protein fouling during bioreactor harvesting. Biotechnol Prog 2024; 40:e3453. [PMID: 38477450 DOI: 10.1002/btpr.3453] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Revised: 02/26/2024] [Accepted: 02/27/2024] [Indexed: 03/14/2024]
Abstract
Chinese hamster ovary (CHO) cells are among the most common cell lines used for therapeutic protein production. Membrane fouling during bioreactor harvesting is a major limitation for the downstream purification of therapeutic proteins. Host cell proteins (HCP) are the most challenging impurities during downstream purification processes. The present work focuses on identification of HCP foulants during CHO bioreactor harvesting using reverse asymmetrical commercial membrane BioOptimal™ MF-SL. In order to investigate foulants and fouling behavior during cell clarification, for the first time a novel backwash process was developed to effectively elute almost all the HCP and DNA from the fouled membrane filter. The isoelectric points (pIs) and molecular weights (MWs) of major HCP in the bioreactor harvest and fouled on the membrane were successfully characterized using two-dimensional gel electrophoresis (2D SDS-PAGE). In addition, a total of 8 HCP were identified using matrix-assisted laser desorption/ionization-mass spectroscopy (MALDI-MS). The majority of these HCP are enzymes or associated with exosomes, both of which can form submicron-sized particles which could lead to the plugging of the filters.
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Affiliation(s)
- Da Zhang
- Ralph E. Martin Department of Chemical Engineering, University of Arkansas, Fayetteville, Arkansas, USA
| | - S Ranil Wickramasinghe
- Ralph E. Martin Department of Chemical Engineering, University of Arkansas, Fayetteville, Arkansas, USA
| | - Andrew L Zydney
- Department of Chemical Engineering, The Pennsylvania State University, University Park, Pennsylvania, USA
| | - John P Smelko
- Biogen, Research Triangle Park, Durham, North Carolina, USA
| | - Abdullah Loman
- Biogen, Research Triangle Park, Durham, North Carolina, USA
| | - April Wheeler
- Asahi Kasei Bioprocess American, Glenview, Illinois, USA
| | - Xianghong Qian
- Department of Biomedical Engineering, University of Arkansas, Fayetteville, Arkansas, USA
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3
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Vitharana S, Stillahn JM, Katayama DS, Henry CS, Manning MC. Application of Formulation Principles to Stability Issues Encountered During Processing, Manufacturing, and Storage of Drug Substance and Drug Product Protein Therapeutics. J Pharm Sci 2023; 112:2724-2751. [PMID: 37572779 DOI: 10.1016/j.xphs.2023.08.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 07/24/2023] [Accepted: 08/07/2023] [Indexed: 08/14/2023]
Abstract
The field of formulation and stabilization of protein therapeutics has become rather extensive. However, most of the focus has been on stabilization of the final drug product. Yet, proteins experience stress and degradation through the manufacturing process, starting with fermentaition. This review describes how formulation principles can be applied to stabilize biopharmaceutical proteins during bioprocessing and manufacturing, considering each unit operation involved in prepration of the drug substance. In addition, the impact of the container on stabilty is discussed as well.
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Affiliation(s)
| | - Joshua M Stillahn
- Legacy BioDesign LLC, Johnstown, CO 80534, USA; Department of Chemistry, Colorado State University, Fort Collins, CO 80523, USA
| | | | - Charles S Henry
- Department of Chemistry, Colorado State University, Fort Collins, CO 80523, USA
| | - Mark Cornell Manning
- Legacy BioDesign LLC, Johnstown, CO 80534, USA; Department of Chemistry, Colorado State University, Fort Collins, CO 80523, USA.
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4
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Gritti F. Absorption and escape kinetics of spherical biomolecules from fully porous particles utilized in size exclusion chromatography. J Chromatogr A 2023; 1701:464050. [PMID: 37216849 DOI: 10.1016/j.chroma.2023.464050] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 05/03/2023] [Accepted: 05/04/2023] [Indexed: 05/24/2023]
Abstract
The increasing demand for the characterization of large biomolecules such as monoclonal antibodies, double-stranded deoxyribonucleic acid (dsDNA), and virus-like particles (VLPs) is raising fundamental questions pertaining to their absorption (ingress) and escape (egress) kinetics from fully porous particles. The exact expression of their concentration profiles is derived as a function of time and radial position across a single sub-3 μm Bridge-Ethylene-Hybrid (BEHTM) Particle present in size exclusion chromatography (SEC) columns. The boundary condition at the external surface area of the particle is a rectangular concentration profile mimicking the passage of the chromatographic zone. Four different BEH Particles were considered in the calculations depending on the molecular size of the analyte: 2.0 μm 100 Å BEH Particles for small molecules, 2.0 μm 200 Å BEH Particles for monoclonal antibodies, 2.0 μm 300 Å BEH Particles for dsDNA (100 base pairs), and 2.5 μm 900 Å BEH Particles for virus-like particles (VLPs). The calculated concentration profiles of small molecules and monoclonal antibodies confirm that all BEH Particles present in the column reach quasi-instantaneously thermodynamic equilibrium with the bulk mobile phase during the passage of the chromatographic band. This is no longer the case for larger biomolecules such as dsDNA or VLPs, especially when the SEC particle is located near the column inlet and for high velocities. The kinetics of biomolecule egress is slower than its kinetics of ingress leading to pronounced peak tailing. The mean concentration of the largest biomolecules in the SEC particles remains always smaller than the maximum bulk concentration. This persistent and transient intra-particle diffusion regime has direct implications on the theoretical expressions of the observed retention factors and plate heights. Classical theories of chromatography assume uniform spatial distribution of the analyte in the particle volume: this hypothesis is not verified for the largest biomolecules. These results imply that non-porous particles or monolithic structures are the most promising stationary phases for the separation and purification of the largest biomolecules in life science.
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Affiliation(s)
- Fabrice Gritti
- Waters Corporation, Instrument/Core Research/Fundamentals, 34 Maple Street, Milford, MA 01757, USA.
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Lu Y, Lin J, Bian T, Chen J, Liu D, Ma M, Gao Z, Chen J, Ju D, Wang X. Risk control of host cell proteins in one therapeutic antibody produced by concentrated fed-batch (CFB) mode. Eng Life Sci 2023; 23:e2200060. [PMID: 36874608 PMCID: PMC9978904 DOI: 10.1002/elsc.202200060] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 12/26/2022] [Accepted: 01/24/2023] [Indexed: 02/10/2023] Open
Abstract
Multiple control strategies, including a downstream purification process with well-controlled parameters and a comprehensive release or characterization for intermediates or drug substances, were implemented to mitigate the potential risk of host cell proteins (HCPs) in one concentrated fed-batch (CFB) mode manufactured product. A host cell process specific enzyme-linked immunosorbent assay (ELISA) method was developed for the quantitation of HCPs. The method was fully validated and showed good performance including high antibody coverage. This was confirmed by 2D Gel-Western Blot analysis. Furthermore, a LC-MS/MS method with non-denaturing digestion and a long gradient chromatographic separation coupled with data dependent acquisition (DDA) on a Thermo/QE-HF-X mass spectrometer was developed as an orthogonal method to help identify the specific types of HCPs in this CFB product. Because of the high sensitivity, selectivity and adaptability of the new developed LC-MS/MS method, significantly more species of HCP contaminants were able to be identified. Even though high levels of HCPs were observed in the harvest bulk of this CFB product, the development of multiple processes and analytical control strategies may greatly mitigate potential risks and reduce HCPs contaminants to a very low level. No high-risk HCP was identified and the total amount of HCPs was very low in the CFB final product.
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Affiliation(s)
- Yiling Lu
- Department of Analytical ScienceFormulation & Quality Control, Genor Biopharma Co., Ltd.ShanghaiChina
| | - Jun Lin
- Department of Biological Medicines & Shanghai Engineering Research Center of ImmunotherapeuticsFudan University School of PharmacyShanghaiChina
- Department of Analytical ScienceFormulation & Quality Control, Genor Biopharma Co., Ltd.ShanghaiChina
| | - Tianze Bian
- Department of Analytical ScienceFormulation & Quality Control, Genor Biopharma Co., Ltd.ShanghaiChina
| | - Jin Chen
- Department of Analytical ScienceFormulation & Quality Control, Genor Biopharma Co., Ltd.ShanghaiChina
| | - Dan Liu
- Department of Analytical ScienceFormulation & Quality Control, Genor Biopharma Co., Ltd.ShanghaiChina
| | - Mingjun Ma
- Department of Analytical ScienceFormulation & Quality Control, Genor Biopharma Co., Ltd.ShanghaiChina
| | - Zhen Gao
- Department of Analytical ScienceFormulation & Quality Control, Genor Biopharma Co., Ltd.ShanghaiChina
| | - Jiemin Chen
- Department of Analytical ScienceFormulation & Quality Control, Genor Biopharma Co., Ltd.ShanghaiChina
| | - Dianwen Ju
- Department of Biological Medicines & Shanghai Engineering Research Center of ImmunotherapeuticsFudan University School of PharmacyShanghaiChina
| | - Xing Wang
- Array Bridge Inc.St. LouisMissouriUSA
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6
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Al Musaimi O, Valenzo OMM, Williams DR. Prediction of peptides retention behavior in reversed-phase liquid chromatography based on their hydrophobicity. J Sep Sci 2023; 46:e2200743. [PMID: 36349538 PMCID: PMC10098489 DOI: 10.1002/jssc.202200743] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 10/30/2022] [Accepted: 10/31/2022] [Indexed: 11/11/2022]
Abstract
Hydrophobicity is an important physicochemical property of peptides and proteins. It is responsible for their conformational changes, stability, as well as various chemical intramolecular and intermolecular interactions. Enormous efforts have been invested to study the extent of hydrophobicity and how it could influence various biological processes, in addition to its crucial role in the separation and purification endeavor as well. Here, we have reviewed various studies that were carried out to determine the hydrophobicity starting from (i) simple amino acids solubility behavior, (ii) experimental approach that was undertaken in the reversed-phase liquid chromatography mode, and ending with (iii) some examples of more advanced computational and machine learning models.
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7
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Gritti F. Modeling of the transient diffusion regime in fully porous particles - Application to the analysis of large biomolecules by ultra-high pressure liquid chromatography. J Chromatogr A 2022; 1679:463362. [DOI: 10.1016/j.chroma.2022.463362] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Revised: 07/19/2022] [Accepted: 07/20/2022] [Indexed: 11/28/2022]
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8
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Frank K, Bernau C, Buyel J. Spherical nanoparticles can be used as non-penetrating tracers to determine the extra-particle void volume in packed-bed chromatography columns. J Chromatogr A 2022; 1675:463174. [DOI: 10.1016/j.chroma.2022.463174] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 05/20/2022] [Accepted: 05/21/2022] [Indexed: 11/24/2022]
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Seisenberger C, Graf T, Haindl M, Wegele H, Wiedmann M, Wohlrab S. Toward optimal clearance - A universal affinity based mass spectrometry approach for comprehensive ELISA reagent coverage evaluation and HCP hitchhiker analysis. Biotechnol Prog 2022; 38:e3244. [PMID: 35150475 DOI: 10.1002/btpr.3244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Revised: 01/31/2022] [Accepted: 02/10/2022] [Indexed: 11/09/2022]
Abstract
In the control strategy for process related impurities in biopharmaceuticals the enzyme linked immunosorbent assay (ELISA) is the method of choice for the quantification of host cell proteins (HCP). Besides two dimensional - western blots (2D-WB), the coverage of ELISA antibodies is increasingly evaluated by affinity purification based liquid chromatography-tandem mass spectrometry (AP-MS) methods. However, all these methods face the problem of unspecific binding issues between antibodies and the matrix, involving the application of arbitrarily defined thresholds during data evaluation. To solve this, a new approach (optimized AP-MS) was developed in this study, for which a cleavable linker was conjugated to the ELISA antibodies enabling the subsequent isolation of specifically interacting HCPs. By comparing both approaches in terms of method variability and the number of false positive or negative hits, we could demonstrate that the optimized AP-MS method is very reproducible and superior in the identification of antibody detection gaps, while previously described strategies suffered from over- or underestimating the coverage. As only antibody associated HCPs were identified, we demonstrated that the method is beneficial for hitchhiker analysis. Overall, the method described herein has proven as a powerful tool for reliable coverage determination of ELISA antibodies, without the need to arbitrarily exclude HCPs during the coverage evaluation. This article is protected by copyright. All rights reserved.
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Affiliation(s)
| | - Tobias Graf
- Roche Diagnostics GmbH, Nonnenwald 2, Penzberg, Germany
| | - Markus Haindl
- Roche Diagnostics GmbH, Nonnenwald 2, Penzberg, Germany
| | - Harald Wegele
- Roche Diagnostics GmbH, Nonnenwald 2, Penzberg, Germany
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10
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Eslami T, Jakob LA, Satzer P, Ebner G, Jungbauer A, Lingg N. Productivity for free: Residence time gradients during loading increase dynamic binding capacity and productivity. Sep Purif Technol 2022. [DOI: 10.1016/j.seppur.2021.119985] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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11
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Bryan L, Henry M, Kelly RM, Frye CC, Osborne MD, Clynes M, Meleady P. Mapping the molecular basis for growth related phenotypes in industrial producer CHO cell lines using differential proteomic analysis. BMC Biotechnol 2021; 21:43. [PMID: 34301236 PMCID: PMC8305936 DOI: 10.1186/s12896-021-00704-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Accepted: 06/23/2021] [Indexed: 11/24/2022] Open
Abstract
Background The ability to achieve high peak viable cell density earlier in CHO cell culture and maintain an extended cell viability throughout the production process is highly desirable to increase recombinant protein yields, reduce host cell impurities for downstream processing and reduce the cost of goods. In this study we implemented label-free LC-MS/MS proteomic profiling of IgG4 producing CHO cell lines throughout the duration of the cell culture to identify differentially expressed (DE) proteins and intracellular pathways associated with the high peak viable cell density (VCD) and extended culture VCD phenotypes. Results We identified key pathways in DNA replication, mitotic cell cycle and evasion of p53 mediated apoptosis in high peak VCD clonally derived cell lines (CDCLs). ER to Golgi vesicle mediated transport was found to be highly expressed in extended culture VCD CDCLs while networks involving endocytosis and oxidative stress response were significantly downregulated. Conclusion This investigation highlights key pathways for targeted engineering to generate desirable CHO cell phenotypes for biotherapeutic production. Supplementary Information The online version contains supplementary material available at 10.1186/s12896-021-00704-8.
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Affiliation(s)
- Laura Bryan
- National Institute for Cellular Biotechnology, Dublin City University, Glasnevin, Dublin 9, Ireland.
| | - Michael Henry
- National Institute for Cellular Biotechnology, Dublin City University, Glasnevin, Dublin 9, Ireland
| | - Ronan M Kelly
- Eli Lilly and Company, LTC-North, 1200 Kentucky Avenue, Indianapolis, IN, 46225, USA
| | - Christopher C Frye
- Eli Lilly and Company, LTC-North, 1200 Kentucky Avenue, Indianapolis, IN, 46225, USA
| | | | - Martin Clynes
- National Institute for Cellular Biotechnology, Dublin City University, Glasnevin, Dublin 9, Ireland
| | - Paula Meleady
- National Institute for Cellular Biotechnology, Dublin City University, Glasnevin, Dublin 9, Ireland
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12
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Machado LS, Soares FQ, Martins RO, Bernardo RA, Cardoso AT, Ruggiero MA, Rabelo D, Souza PS, Chaves AR. Polypyrrole monolithic extraction phase: From conventional to miniaturized sample preparation techniques. J Chromatogr A 2021; 1651:462260. [PMID: 34090059 DOI: 10.1016/j.chroma.2021.462260] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Revised: 05/09/2021] [Accepted: 05/11/2021] [Indexed: 11/26/2022]
Abstract
Monolithic polymers are described as continuous and highly porous materials. They have been gaining popularity as an effective extracting phase for some sample preparation methods, due to their variety of functionalities, such as wide pH range tolerance, good permeability, and its ability to allow changes into their surface. Polypyrrole represents an interesting alternative for the modification in extraction phases due to its well related ability to perform multiple interactions, such as acid-base, π - π, ion exchange, interactions with hydrophobic affinities or polar functional groups. Among the different sample preparation techniques, solid-phase extraction (SPE) is one of the most popular and used; a miniaturized version of SPE is the disposable pipette extraction (DPX). DPX is a recent miniaturized extraction technique that usually employing silica-based sorbents inside a pipette tip (5 or 1 mL). The present study proposes the development of a monolithic extraction phase composed by styrene divinylbenzene (1:1) modified with polypyrrole for SPE and DPX techniques. The efficiency of the material was evaluated in face of the extraction of different samples and analytes, triazine herbicides in water and dexamethasone in synthetic synovial liquid by conventional and miniaturized solid-phase extraction techniques. The extractions performed by SPE and DPX presented absolute recovery values ranging from 74.8 to 105.0%, inter-day precision ranging from 0.6 to 14.0%, and limit of quantification of 0.5 and 5.0 ng.mL-1, respectively. The DPX miniaturized method exhibited results equivalent to the methods reported in the literature for extraction of dexamethasone in synovial fluid samples. Moreover, this technique proved to be quicker and cheaper than SPE, and produced fewer residual volumes, supporting the preference for green chemistry. Monolithic polymers modified with polypyrrole presented to be a feasible alternative extraction phase for miniaturized sample preparation techniques.
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Affiliation(s)
- Lucas S Machado
- Instituto de Química, Universidade Federal de Goiás, Goiânia, GO 74690-900, Brazil
| | - Francielle Q Soares
- Instituto de Química, Universidade Federal de Goiás, Goiânia, GO 74690-900, Brazil; Instituto Federal de Goiás, campus Inhumas, Inhumas, GO, Brazil
| | - Rafael O Martins
- Instituto de Química, Universidade Federal de Goiás, Goiânia, GO 74690-900, Brazil
| | - Ricardo A Bernardo
- Instituto de Química, Universidade Federal de Goiás, Goiânia, GO 74690-900, Brazil
| | - Alessandra T Cardoso
- Instituto de Química, Universidade Federal de Goiás, Goiânia, GO 74690-900, Brazil
| | | | - Denilson Rabelo
- Instituto de Química, Universidade Federal de Goiás, Goiânia, GO 74690-900, Brazil
| | - Paulo Sérgio Souza
- Instituto de Química, Universidade Federal de Goiás, Goiânia, GO 74690-900, Brazil
| | - Andréa R Chaves
- Instituto de Química, Universidade Federal de Goiás, Goiânia, GO 74690-900, Brazil.
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A cuboid chromatography device having short bed-height gives better protein separation at a significantly lower pressure drop than a taller column having the same bed-volume. J Chromatogr A 2021; 1647:462167. [PMID: 33962076 DOI: 10.1016/j.chroma.2021.462167] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 04/07/2021] [Accepted: 04/12/2021] [Indexed: 11/20/2022]
Abstract
Simultaneously reducing the bed-height and increasing the area of cross-section, while keeping the bed-volume the same, would substantially reduce the pressure drop across a process chromatography column. This would minimize problems such as resin compaction and non-uniformity in column packing, which are commonly faced when using soft chromatographic media. However, the increase in macroscale convective dispersion due to the increase in column diameter, and the resultant loss in resolution would far outweigh any potential benefit. Cuboid-packed bed devices have lower macroscale convective dispersion compared to their equivalent cylindrical columns. In this paper, we discuss how and why a flat cuboid chromatography device having a short bed-height gives better protein separation, at a significantly lower pressure drop, than a taller column having the same bed-volume. First, we explored this option based on computational fluid dynamic (CFD) simulations. Depending on the flow rate, the pressure drop across the flat cuboid device was lower than that in the tall column by a factor of 6.35 to 6.4 (i.e. less than 1/6th the pressure). The CFD results also confirmed that the macroscale convective dispersion within the flat cuboid device was significantly lower. Head-to-head separation experiments using a 1 mL flat cuboid device having a bed-height of 10 mm, and a 1 mL tall column having a bed-height of 25.8 mm, both packed with the same chromatographic media, were carried out. The number of theoretical plates per unit bed-height was on an average, around 2.5 time times greater with the flat cuboid device, while the total number of theoretical plates in the two devices were comparable. At any given superficial velocity, the height equivalent of a theoretical plate in the tall column was on an average, higher by a factor 2.5. Binary protein separation experiments showed that at any given flow rate, the resolution obtained using the flat cuboid device was significantly higher than that obtained with the tall column. This work opens up the possibility of designing and developing short bed-height chromatography devices for carrying out high-resolution biopharmaceutical purifications, at very low pressures.
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14
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Castro LS, Lobo GS, Pereira P, Freire MG, Neves MC, Pedro AQ. Interferon-Based Biopharmaceuticals: Overview on the Production, Purification, and Formulation. Vaccines (Basel) 2021; 9:328. [PMID: 33915863 PMCID: PMC8065594 DOI: 10.3390/vaccines9040328] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Revised: 03/20/2021] [Accepted: 03/22/2021] [Indexed: 12/17/2022] Open
Abstract
The advent of biopharmaceuticals in modern medicine brought enormous benefits to the treatment of numerous human diseases and improved the well-being of many people worldwide. First introduced in the market in the early 1980s, the number of approved biopharmaceutical products has been steadily increasing, with therapeutic proteins, antibodies, and their derivatives accounting for most of the generated revenues. The success of pharmaceutical biotechnology is closely linked with remarkable developments in DNA recombinant technology, which has enabled the production of proteins with high specificity. Among promising biopharmaceuticals are interferons, first described by Isaacs and Lindenmann in 1957 and approved for clinical use in humans nearly thirty years later. Interferons are secreted autocrine and paracrine proteins, which by regulating several biochemical pathways have a spectrum of clinical effectiveness against viral infections, malignant diseases, and multiple sclerosis. Given their relevance and sustained market share, this review provides an overview on the evolution of interferon manufacture, comprising their production, purification, and formulation stages. Remarkable developments achieved in the last decades are herein discussed in three main sections: (i) an upstream stage, including genetically engineered genes, vectors, and hosts, and optimization of culture conditions (culture media, induction temperature, type and concentration of inducer, induction regimens, and scale); (ii) a downstream stage, focusing on single- and multiple-step chromatography, and emerging alternatives (e.g., aqueous two-phase systems); and (iii) formulation and delivery, providing an overview of improved bioactivities and extended half-lives and targeted delivery to the site of action. This review ends with an outlook and foreseeable prospects for underdeveloped aspects of biopharma research involving human interferons.
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Affiliation(s)
- Leonor S. Castro
- CICECO–Aveiro Institute of Materials, Chemistry Department, University of Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal; (L.S.C.); (G.S.L.); (M.G.F.)
| | - Guilherme S. Lobo
- CICECO–Aveiro Institute of Materials, Chemistry Department, University of Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal; (L.S.C.); (G.S.L.); (M.G.F.)
| | - Patrícia Pereira
- Centre for Mechanical Engineering, Materials and Processes, Department of Chemical Engineering, University of Coimbra, Rua Sílvio Lima-Polo II, 3030-790 Coimbra, Portugal;
| | - Mara G. Freire
- CICECO–Aveiro Institute of Materials, Chemistry Department, University of Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal; (L.S.C.); (G.S.L.); (M.G.F.)
| | - Márcia C. Neves
- CICECO–Aveiro Institute of Materials, Chemistry Department, University of Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal; (L.S.C.); (G.S.L.); (M.G.F.)
| | - Augusto Q. Pedro
- CICECO–Aveiro Institute of Materials, Chemistry Department, University of Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal; (L.S.C.); (G.S.L.); (M.G.F.)
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15
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Economic analysis of the production and recovery of green fluorescent protein using ATPS-based bioprocesses. Sep Purif Technol 2021. [DOI: 10.1016/j.seppur.2020.117595] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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16
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Santos AG, de Albuquerque TL, Ribeiro BD, Coelho MAZ. In situ product recovery techniques aiming to obtain biotechnological products: A glance to current knowledge. Biotechnol Appl Biochem 2020; 68:1044-1057. [PMID: 32931049 DOI: 10.1002/bab.2024] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Accepted: 09/07/2020] [Indexed: 11/07/2022]
Abstract
Biotechnology and bioengineering techniques have been widely used in the production of biofuels, chemicals, pharmaceuticals, and food additives, being considered a "green" form of production because they use renewable and nonpolluting energy sources. On the other hand, in the traditional processes of production, the target product obtained by biotechnological routes must undergo several stages of purification, which makes these processes more expensive. In the past few years, some works have focused on processes that integrate fermentation to the recovery and purification steps necessary to obtain the final product required. This type of process is called in situ product recovery or extractive fermentation. However, there are some differences in the concepts of the techniques used in these bioprocesses. In this way, this review sought to compile relevant content on considerations and procedures that are being used in this field, such as evaporation, liquid-liquid extraction, permeation, and adsorption techniques. Also, the objective of this review was to approach the different configurations in the recent literature of the processes employed and the main bioproducts obtained, which can be used in the food, pharmaceutical, chemical, and/or fuel additives industry. We intended to elucidate concepts of these techniques, considered very recent, but which emerge as a promising alternative for the integration of bioprocesses.
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Affiliation(s)
- Ariane G Santos
- Department of Biochemical Engineering, School of Chemistry, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
| | - Tiago L de Albuquerque
- Department of Biochemical Engineering, School of Chemistry, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
| | - Bernardo D Ribeiro
- Department of Biochemical Engineering, School of Chemistry, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
| | - Maria Alice Z Coelho
- Department of Biochemical Engineering, School of Chemistry, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
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17
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Kinetically selective preparative chromatography of biologically active substances on polymeric sorbents. Russ Chem Bull 2020. [DOI: 10.1007/s11172-020-2845-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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18
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Multiplex secretome engineering enhances recombinant protein production and purity. Nat Commun 2020; 11:1908. [PMID: 32313013 PMCID: PMC7170862 DOI: 10.1038/s41467-020-15866-w] [Citation(s) in RCA: 52] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Accepted: 03/31/2020] [Indexed: 01/20/2023] Open
Abstract
Host cell proteins (HCPs) are process-related impurities generated during biotherapeutic protein production. HCPs can be problematic if they pose a significant metabolic demand, degrade product quality, or contaminate the final product. Here, we present an effort to create a "clean" Chinese hamster ovary (CHO) cell by disrupting multiple genes to eliminate HCPs. Using a model of CHO cell protein secretion, we predict that the elimination of unnecessary HCPs could have a non-negligible impact on protein production. We analyze the HCP content of 6-protein, 11-protein, and 14-protein knockout clones. These cell lines exhibit a substantial reduction in total HCP content (40%-70%). We also observe higher productivity and improved growth characteristics in specific clones. The reduced HCP content facilitates purification of a monoclonal antibody. Thus, substantial improvements can be made in protein titer and purity through large-scale HCP deletion, providing an avenue to increased quality and affordability of high-value biopharmaceuticals.
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19
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Electrospun Weak Anion-exchange Fibrous Membranes for Protein Purification. MEMBRANES 2020; 10:membranes10030039. [PMID: 32121609 PMCID: PMC7143834 DOI: 10.3390/membranes10030039] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Revised: 02/23/2020] [Accepted: 02/25/2020] [Indexed: 01/19/2023]
Abstract
Membrane based ion-exchange (IEX) and hydrophobic interaction chromatography (HIC) for protein purification is often used to remove impurities and aggregates operated under the flow-through mode. IEX and HIC are also limited by capacity and recovery when operated under bind-and-elute mode for the fractionation of proteins. Electrospun nanofibrous membrane is characterized by its high surface area to volume ratio and high permeability. Here tertiary amine ligands are grafted onto the electrospun polysulfone (PSf) and polyacrylonitrile (PAN) membrane substrates using UV-initiated polymerization. Static and dynamic binding capacities for model protein bovine serum albumin (BSA) were determined under appropriate bind and elute buffer conditions. Static and dynamic binding capacities in the order of ~100 mg/mL were obtained for the functionalized electrospun PAN membranes whereas these values reached ~200 mg/mL for the functionalized electrospun PSf membranes. Protein recovery of over 96% was obtained for PAN-based membranes. However, it is only 56% for PSf-based membranes. Our work indicates that surface modification of electrospun membranes by grafting polymeric ligands can enhance protein adsorption due to increased surface area-to-volume ratio.
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20
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Steff AM, Cadieux-Dion C, de Lannoy G, Prato MK, Czeszak X, André B, Ingels DC, Louckx M, Dewé W, Picciolato M, Maleux K, Fissette L, Dieussaert I. Hamster neogenin, a host-cell protein contained in a respiratory syncytial virus candidate vaccine, induces antibody responses in rabbits but not in clinical trial participants. Hum Vaccin Immunother 2020; 16:1327-1337. [PMID: 31951765 PMCID: PMC7482880 DOI: 10.1080/21645515.2019.1693749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
A recombinant respiratory syncytial virus (RSV) fusion glycoprotein candidate vaccine (RSV-PreF) manufactured in Chinese hamster ovary cells was developed for immunization of pregnant women, to protect newborns against RSV disease through trans-placental antibody transfer. Traces of a host-cell protein, hamster neogenin (haNEO1), were identified in purified RSV-PreF antigen material. Given the high amino-acid sequence homology between haNEO1 and human neogenin (huNEO1), there was a risk that potential vaccine-induced anti-neogenin immunity could affect huNEO1 function in mother or fetus. Anti-huNEO1 IgGs were measured by enzyme-linked immunosorbent assay in sera from rabbits and trial participants (Phase 1 and 2 trials enrolling 128 men and 500 non-pregnant women, respectively; NCT01905215/NCT02360475) collected after immunization with RSV-PreF formulations containing different antigen doses with/without aluminum-hydroxide adjuvant. In rabbits, four injections administered at 14-day intervals induced huNEO1-specific IgG responses in an antigen-dose- and adjuvant-dependent manner, which plateaued in the highest-dose groups after three injections. In humans, no vaccination-induced anti-huNEO1 IgG responses were detected upon a single immunization, as the values in vaccine and control groups fluctuated around pre-vaccination levels up to 90/360 days post-vaccination. A minority of participants had anti-huNEO1 levels ≥ assay cutoff before vaccination, which did not increase post-vaccination. Thus, despite detecting vaccine-induced huNEO1-specific responses in rabbits, we found no evidence that the candidate vaccine had induced anti-huNEO1 immunity in human adults. The antigen purification process was nevertheless optimized, and haNEO1-reduced vaccines were used in a subsequent Phase 2 trial enrolling 400 non-pregnant women (NCT02956837), in which again no vaccine-induced anti-huNEO1 responses were detected.
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21
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Martinez A, Knaub K, Monter M, Hekmat D, Weuster-Botz D. Improved packing of preparative biochromatography columns by mechanical vibration. Biotechnol Prog 2019; 36:e2950. [PMID: 31845490 DOI: 10.1002/btpr.2950] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Revised: 11/22/2019] [Accepted: 12/09/2019] [Indexed: 11/12/2022]
Abstract
The bioprocessing industry relies on packed-bed column chromatography as its primary separation process to attain the required high product purities and fulfill the strict requirements from regulatory bodies. Conventional column packing methods rely on flow packing and/or mechanical compression. In this work, the application of ultrasound and mechanical vibration during packing was studied with respect to packing density and homogeneity. We investigated two widely used biochromatography media, incompressible ceramic hydroxyapatite, and compressible polymethacrylate-based particles, packed in a laboratory-scale column with an inner diameter of 50 mm. It was shown that ultrasonic irradiation led to reduced particle segregation during sedimentation of a homogenized slurry of polymethacrylate particles. However, the application of ultrasound did not lead to an improved microstructure of already packed columns due to the low volumetric energy input (~152 W/L) caused by high acoustic reflection losses. In contrast, the application of pneumatic mechanical vibration led to considerable improvements. Flow-decoupled axial linear vibration was most suitable at a volumetric force output of ~1,190 N/L. In the case of the ceramic hydroxyapatite particles, a 13% further decrease of the packing height was achieved and the reduced height equivalent to a theoretical plate (rHETP) was decreased by 44%. For the polymethacrylate particles, a 18% further packing consolidation was achieved and the rHETP was reduced by 25%. Hence, it was shown that applying mechanical vibration resulted in more efficiently packed columns. The application of vibration furthermore is potentially suitable for in situ elimination of flow channels near the column wall.
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Affiliation(s)
- Andrés Martinez
- Technical University of Munich, Institute of Biochemical Engineering, Garching, Germany
| | - Konstantin Knaub
- Technical University of Munich, Institute of Biochemical Engineering, Garching, Germany
| | - Marc Monter
- Technical University of Munich, Institute of Biochemical Engineering, Garching, Germany
| | - Dariusch Hekmat
- Technical University of Munich, Institute of Biochemical Engineering, Garching, Germany
| | - Dirk Weuster-Botz
- Technical University of Munich, Institute of Biochemical Engineering, Garching, Germany
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22
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Peluso P, Mamane V, Dessì A, Dallocchio R, Aubert E, Gatti C, Mangelings D, Cossu S. Halogen bond in separation science: A critical analysis across experimental and theoretical results. J Chromatogr A 2019; 1616:460788. [PMID: 31866134 DOI: 10.1016/j.chroma.2019.460788] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Revised: 12/09/2019] [Accepted: 12/11/2019] [Indexed: 01/10/2023]
Abstract
The halogen bond (XB) is a noncovalent interaction involving a halogen acting as electrophile and a Lewis base. In the last decades XB has found practical application in several fields. Nevertheless, despite the pivotal role of noncovalent interactions in separation science, investigations of XB in this field are still in their infancy, and so far a limited number of studies focusing on solid phase extraction, liquid-liquid microextraction, liquid-phase chromatography, and gas chromatography separation have been published. In addition, in the last few years, our groups have been systematically studying the potentiality of XB for HPLC enantioseparations. On this basis, in the present paper up-to-date results emerging from focused experiments and theoretical analyses performed by our laboratories are integrated with a descriptive presentation of XB features and the few studies published until now in separation science. Then, the aim of this article is to provide a comprehensive and critical discussion of the topic, and account for some still open issues in the application of XB to separate chemical mixtures.
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Affiliation(s)
- Paola Peluso
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, Sassari I-07100, Italy.
| | - Victor Mamane
- Institut de Chimie de Strasbourg, UMR CNRS 7177, Equipe LASYROC, 1 rue Blaise Pascal, Strasbourg Cedex 67008, France.
| | - Alessandro Dessì
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, Sassari I-07100, Italy
| | - Roberto Dallocchio
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, Sassari I-07100, Italy
| | - Emmanuel Aubert
- Cristallographie, Résonance Magnétique et Modélisations (CRM2), UMR CNRS 7036, Université de Lorraine, Bd des Aiguillettes, Vandoeuvre-les-Nancy 54506, France
| | - Carlo Gatti
- CNR-SCITEC, Istituto di Scienze e Tecnologie Chimiche "Giulio Natta", sezione di via Golgi, via C. Golgi 19, Milano 20133, Italy
| | - Debby Mangelings
- Department of Analytical Chemistry, Applied Chemometrics and Molecular Modelling, Vrije Universiteit Brussel - VUB, Laarbeeklaan 103, B-1090 Brussels, Belgium
| | - Sergio Cossu
- Dipartimento di Scienze Molecolari e Nanosistemi DSMN, Università Ca' Foscari Venezia, Via Torino 155, Mestre Venezia I-30172, Italy
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23
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Liu W, Fan X, Wang X, Rai K, Su J, Xian M, Nian R. Chromatin-directed clarification in cell culture fluid enables non-protein affinity antibody purification by tangential flow filtration integrated with high-capacity cation exchange chromatography. Biochem Eng J 2019. [DOI: 10.1016/j.bej.2019.107315] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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24
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Liu X, Chen Y, Zhao Y, Liu-Compton V, Chen W, Payne G, Lazar AC. Identification and characterization of co-purifying CHO host cell proteins in monoclonal antibody purification process. J Pharm Biomed Anal 2019; 174:500-508. [DOI: 10.1016/j.jpba.2019.06.021] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2019] [Revised: 06/10/2019] [Accepted: 06/16/2019] [Indexed: 11/28/2022]
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25
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Fischer V, Kucia-Tran R, Lewis WJ, Velayudhan A. Hybrid optimization of preparative chromatography for a ternary monoclonal antibody mixture. Biotechnol Prog 2019; 35:e2849. [PMID: 31121081 DOI: 10.1002/btpr.2849] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2018] [Revised: 02/01/2019] [Accepted: 04/19/2019] [Indexed: 11/09/2022]
Abstract
In the purification of monoclonal antibodies, ion-exchange chromatography is typically used among the polishing steps to reduce the amount of product-related impurities such as aggregates and fragments, whilst simultaneously reducing HCP, residual Protein A and potential toxins and viruses. When the product-related impurities are difficult to separate from the products, the optimization of these chromatographic steps can be complex and laborious. In this paper, we optimize the polishing chromatography of a monoclonal antibody from a challenging ternary feed mixture by introducing a hybrid approach of the simplex method and a form of local optimization. To maximize the productivity of this preparative bind-and-elute cation-exchange chromatography, wide ranges of the three critical operational parameters-column loading, the initial salt concentration, and gradient slope-had to be considered. The hybrid optimization approach is shown to be extremely effective in dealing with this complex separation that was subject to multiple constraints based on yield, purity, and product breakthrough. Furthermore, it enabled the generation of a large knowledge space that was subsequently used to study the sensitivity of the objective function. Increased design space understanding was gained through the application of Monte Carlo simulations. Hence, this work proposes a powerful hybrid optimization method, applied to an industrially relevant process development challenge. The properties of this approach and the results and insights gained, make it perfectly suited for the rapid development of biotechnological unit operations during early-stage bioprocess development.
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Affiliation(s)
- Vivien Fischer
- Department of Biochemical Engineering, The Advanced Centre for Biochemical Engineering, University College London, London, UK.,Biopharm Process Research, BioPharm R&D, GlaxoSmithKine, Stevenage, UK
| | | | - William J Lewis
- Biopharm Process Research, BioPharm R&D, GlaxoSmithKine, Stevenage, UK
| | - Ajoy Velayudhan
- Department of Biochemical Engineering, The Advanced Centre for Biochemical Engineering, University College London, London, UK
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26
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Fukuda N, Senga Y, Honda S. Anxa2
‐ and
Ctsd
‐knockout CHO cell lines to diminish the risk of contamination with host cell proteins. Biotechnol Prog 2019; 35:e2820. [DOI: 10.1002/btpr.2820] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2019] [Revised: 03/08/2019] [Accepted: 04/09/2019] [Indexed: 11/09/2022]
Affiliation(s)
- Nobuo Fukuda
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST) Ibaraki Japan
| | - Yukako Senga
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST) Ibaraki Japan
| | - Shinya Honda
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST) Ibaraki Japan
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27
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Advance chromatin extraction improves the performance of electropositive mixed-mode chromatography as a capture step and enables its integration with void-exclusion anion exchange chromatography as a two-column-step purification platform for monoclonal antibody production. Biochem Eng J 2019. [DOI: 10.1016/j.bej.2018.11.018] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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28
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Model assisted comparison of Protein A resins and multi-column chromatography for capture processes. J Biotechnol 2018; 285:64-73. [DOI: 10.1016/j.jbiotec.2018.08.014] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2018] [Accepted: 08/25/2018] [Indexed: 11/21/2022]
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29
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Forssén P, Multia E, Samuelsson J, Andersson M, Aastrup T, Altun S, Wallinder D, Wallbing L, Liangsupree T, Riekkola ML, Fornstedt T. Reliable Strategy for Analysis of Complex Biosensor Data. Anal Chem 2018; 90:5366-5374. [PMID: 29589451 PMCID: PMC6150654 DOI: 10.1021/acs.analchem.8b00504] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
![]()
When
using biosensors, analyte biomolecules of several different
concentrations are percolated over a chip with immobilized ligand
molecules that form complexes with analytes. However, in many cases
of biological interest, e.g., in antibody interactions, complex formation
steady-state is not reached. The data measured are so-called sensorgram,
one for each analyte concentration, with total complex concentration
vs time. Here we present a new four-step strategy for more reliable
processing of this complex kinetic binding data and compare it with
the standard global fitting procedure. In our strategy, we first calculate
a dissociation graph to reveal if there are any heterogeneous interactions.
Thereafter, a new numerical algorithm, AIDA, is used to get the number
of different complex formation reactions for each analyte concentration
level. This information is then used to estimate the corresponding
complex formation rate constants by fitting to the measured sensorgram
one by one. Finally, all estimated rate constants are plotted and
clustered, where each cluster represents a complex formation. Synthetic
and experimental data obtained from three different QCM biosensor
experimental systems having fast (close to steady-state), moderate,
and slow kinetics (far from steady-state) were evaluated using the
four-step strategy and standard global fitting. The new strategy allowed
us to more reliably estimate the number of different complex formations,
especially for cases of complex and slow dissociation kinetics. Moreover,
the new strategy proved to be more robust as it enables one to handle
system drift, i.e., data from biosensor chips that deteriorate over
time.
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Affiliation(s)
- Patrik Forssén
- Department of Engineering and Chemical Sciences , Karlstad University , SE-651 88 Karlstad , Sweden
| | - Evgen Multia
- Department of Chemistry , P.O. Box 55, FI-00014 University of Helsinki , Finland
| | - Jörgen Samuelsson
- Department of Engineering and Chemical Sciences , Karlstad University , SE-651 88 Karlstad , Sweden
| | - Marie Andersson
- Department of Engineering and Chemical Sciences , Karlstad University , SE-651 88 Karlstad , Sweden
| | - Teodor Aastrup
- Attana AB , Björnäsvägen 21 , SE-114 19 Stockholm , Sweden
| | - Samuel Altun
- Attana AB , Björnäsvägen 21 , SE-114 19 Stockholm , Sweden
| | | | - Linus Wallbing
- Attana AB , Björnäsvägen 21 , SE-114 19 Stockholm , Sweden
| | | | - Marja-Liisa Riekkola
- Department of Chemistry , P.O. Box 55, FI-00014 University of Helsinki , Finland
| | - Torgny Fornstedt
- Department of Engineering and Chemical Sciences , Karlstad University , SE-651 88 Karlstad , Sweden
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30
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Chemical modification of protein a chromatography ligands with polyethylene glycol. II: Effects on resin robustness and process selectivity. J Chromatogr A 2018; 1546:89-96. [DOI: 10.1016/j.chroma.2018.02.024] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2017] [Revised: 01/13/2018] [Accepted: 02/13/2018] [Indexed: 11/18/2022]
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31
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Meyer K, Huusom JK, Abildskov J. High-order approximation of chromatographic models using a nodal discontinuous Galerkin approach. Comput Chem Eng 2018. [DOI: 10.1016/j.compchemeng.2017.10.023] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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32
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Morgenstern J, Wang G, Baumann P, Hubbuch J. Model-Based Investigation on the Mass Transfer and Adsorption Mechanisms of Mono-Pegylated Lysozyme in Ion-Exchange Chromatography. Biotechnol J 2017; 12. [DOI: 10.1002/biot.201700255] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2017] [Revised: 07/05/2017] [Indexed: 12/14/2022]
Affiliation(s)
- Josefine Morgenstern
- Institute of Engineering in Life Sciences; Section IV: Biomolecular Separation Engineering; Karlsruhe Institute of Technology (KIT); Engler-Bunte-Ring 3 76131 Karlsruhe Germany
| | - Gang Wang
- Institute of Engineering in Life Sciences; Section IV: Biomolecular Separation Engineering; Karlsruhe Institute of Technology (KIT); Engler-Bunte-Ring 3 76131 Karlsruhe Germany
| | - Pascal Baumann
- Institute of Engineering in Life Sciences; Section IV: Biomolecular Separation Engineering; Karlsruhe Institute of Technology (KIT); Engler-Bunte-Ring 3 76131 Karlsruhe Germany
| | - Jürgen Hubbuch
- Institute of Engineering in Life Sciences; Section IV: Biomolecular Separation Engineering; Karlsruhe Institute of Technology (KIT); Engler-Bunte-Ring 3 76131 Karlsruhe Germany
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33
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Lee YF, Kluters S, Hillmann M, von Hirschheydt T, Frech C. Modeling of bispecific antibody elution in mixed-mode cation-exchange chromatography. J Sep Sci 2017; 40:3632-3645. [DOI: 10.1002/jssc.201700313] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2017] [Revised: 07/04/2017] [Accepted: 07/09/2017] [Indexed: 12/30/2022]
Affiliation(s)
- Yi Feng Lee
- Institute of Biochemistry; University of Applied Sciences Mannheim; Mannheim Germany
| | - Simon Kluters
- Institute of Biochemistry; University of Applied Sciences Mannheim; Mannheim Germany
| | - Mirjam Hillmann
- Institute of Biochemistry; University of Applied Sciences Mannheim; Mannheim Germany
| | - Thomas von Hirschheydt
- Roche Pharma Research and Early Development; Roche Innovation Center Munich; Penzberg Germany
| | - Christian Frech
- Institute of Biochemistry; University of Applied Sciences Mannheim; Mannheim Germany
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34
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Hughson MD, Cruz TA, Carvalho RJ, Castilho LR. Development of a 3-step straight-through purification strategy combining membrane adsorbers and resins. Biotechnol Prog 2017; 33:931-940. [DOI: 10.1002/btpr.2501] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2016] [Revised: 05/18/2017] [Indexed: 11/06/2022]
Affiliation(s)
- Michael D. Hughson
- Federal University of Rio de Janeiro (UFRJ); COPPE, Chemical Engineering Program, Cell Culture Engineering Laboratory; Ilha do Fundao Rio de Janeiro 21941-972 Brazil
| | - Thayana A. Cruz
- Federal University of Rio de Janeiro (UFRJ); COPPE, Chemical Engineering Program, Cell Culture Engineering Laboratory; Ilha do Fundao Rio de Janeiro 21941-972 Brazil
- Federal University of Rio de Janeiro (UFRJ), IQ, Biochemistry Program; Ilha do Fundao Rio de Janeiro 21941-909 Brazil
| | - Rimenys J. Carvalho
- Federal University of Rio de Janeiro (UFRJ); COPPE, Chemical Engineering Program, Cell Culture Engineering Laboratory; Ilha do Fundao Rio de Janeiro 21941-972 Brazil
| | - Leda R. Castilho
- Federal University of Rio de Janeiro (UFRJ); COPPE, Chemical Engineering Program, Cell Culture Engineering Laboratory; Ilha do Fundao Rio de Janeiro 21941-972 Brazil
- Federal University of Rio de Janeiro (UFRJ), IQ, Biochemistry Program; Ilha do Fundao Rio de Janeiro 21941-909 Brazil
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35
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Thomson AS, Mai S, Byrne MP. A novel approach to characterize host cell proteins associated with therapeutic monoclonal antibodies. Biotechnol Bioeng 2017; 114:1208-1214. [DOI: 10.1002/bit.26256] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2016] [Revised: 01/05/2017] [Accepted: 01/16/2017] [Indexed: 01/20/2023]
Affiliation(s)
- Andrew S. Thomson
- R&D Platform Technology & Science; GlaxoSmithKline; King of Prussia Pennsylvania 19406
| | - Shing Mai
- R&D Platform Technology & Science; GlaxoSmithKline; King of Prussia Pennsylvania 19406
| | - Michael P. Byrne
- R&D Platform Technology & Science; GlaxoSmithKline; King of Prussia Pennsylvania 19406
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36
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Liu Z, Wickramasinghe SR, Qian X. Ion-specificity in protein binding and recovery for the responsive hydrophobic poly(vinylcaprolactam) ligand. RSC Adv 2017. [DOI: 10.1039/c7ra06022j] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
The conformational switch between the hydrophobic state and hydrophilic state of thermo-responsive poly(vinylcaprolactam) (PVCL) has great potential for protein purification as a hydrophobic interaction chromatography ligand.
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Affiliation(s)
- Zizhao Liu
- Department of Chemical Engineering
- University of Arkansas
- Fayetteville
- USA
| | | | - Xianghong Qian
- Department of Biomedical Engineering
- University of Arkansas
- Fayetteville
- USA
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37
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Abstract
Separation science continues to occupy the central position in the overall strategy for the downstream processing and purification of therapeutic protein products for human use. Increasing product titers from mammalian cell culture and new emerging classes of biopharmaceuticals has presented a challenge to the industry to identify ways of improving the robustness and economics of chromatography processes. In commercial manufacturing, there is always a need to increase the scale of the chromatography operations which are typically developed and optimized in small-scale laboratory experiments. This review discusses the key factors in the chromatography process that need to be considered as the scale of the purification step is increased in order to maintain the purity and integrity of the product purified at smaller scale.
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38
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Affiliation(s)
- Ralf Pörtner
- Hamburg University of Technology; Institute of Bioprocess and Biosystems Engineering; Denickestr. 15 D21071 Hamburg Germany
| | - Uwe Jandt
- Hamburg University of Technology; Institute of Bioprocess and Biosystems Engineering; Denickestr. 15 D21071 Hamburg Germany
| | - An-Ping Zeng
- Hamburg University of Technology; Institute of Bioprocess and Biosystems Engineering; Denickestr. 15 D21071 Hamburg Germany
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39
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High-throughput strategies for the discovery and engineering of enzymes for biocatalysis. Bioprocess Biosyst Eng 2016; 40:161-180. [DOI: 10.1007/s00449-016-1690-x] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2016] [Accepted: 10/05/2016] [Indexed: 12/16/2022]
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40
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Haberl-Meglič S, Levičnik E, Luengo E, Raso J, Miklavčič D. The effect of temperature and bacterial growth phase on protein extraction by means of electroporation. Bioelectrochemistry 2016; 112:77-82. [PMID: 27561651 DOI: 10.1016/j.bioelechem.2016.08.002] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2015] [Revised: 08/01/2016] [Accepted: 08/15/2016] [Indexed: 11/27/2022]
Abstract
Different chemical and physical methods are used for extraction of proteins from bacteria, which are used in variety of fields. But on a large scale, many methods have severe drawbacks. Recently, extraction by means of electroporation showed a great potential to quickly obtain proteins from bacteria. Since many parameters are affecting the yield of extracted proteins, our aim was to investigate the effect of temperature and bacterial growth phase on the yield of extracted proteins. At the same time bacterial viability was tested. Our results showed that the temperature has a great effect on protein extraction, the best temperature post treatment being 4°C. No effect on bacterial viability was observed for all temperatures tested. Also bacterial growth phase did not affect the yield of extracted proteins or bacterial viability. Nevertheless, further experiments may need to be performed to confirm this observation, since only one incubation temperature (4°C) and one incubation time before and after electroporation (0.5 and 1h) were tested for bacterial growth phase. Based on our results we conclude that temperature is a key element for bacterial membrane to stay in a permeabilized state, so more proteins flow out of bacteria into surrounding media.
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Affiliation(s)
- Saša Haberl-Meglič
- University of Ljubljana, Faculty of Electrical Engineering, Trzaska 25, 1000 Ljubljana, Slovenia
| | - Eva Levičnik
- University of Ljubljana, Faculty of Electrical Engineering, Trzaska 25, 1000 Ljubljana, Slovenia
| | - Elisa Luengo
- University of Zaragoza, Faculty of Veterinary, Zaragoza, Spain
| | - Javier Raso
- University of Zaragoza, Faculty of Veterinary, Zaragoza, Spain
| | - Damijan Miklavčič
- University of Ljubljana, Faculty of Electrical Engineering, Trzaska 25, 1000 Ljubljana, Slovenia.
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41
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Chiverton LM, Evans C, Pandhal J, Landels AR, Rees BJ, Levison PR, Wright PC, Smales CM. Quantitative definition and monitoring of the host cell protein proteome using iTRAQ - a study of an industrial mAb producing CHO-S cell line. Biotechnol J 2016; 11:1014-24. [PMID: 27214759 PMCID: PMC5031201 DOI: 10.1002/biot.201500550] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2015] [Revised: 02/28/2016] [Accepted: 05/12/2016] [Indexed: 11/14/2022]
Abstract
There are few studies defining CHO host cell proteins (HCPs) and the flux of these throughout a downstream purification process. Here we have applied quantitative iTRAQ proteomics to follow the HCP profile of an antibody (mAb) producing CHO-S cell line throughout a standard downstream purification procedure consisting of a Protein A, cation and anion exchange process. We used both 6 sample iTRAQ experiment to analyze technical replicates of three samples, which were culture harvest (HCCF), Protein A flow through and Protein A eluate and an 8 sample format to analyze technical replicates of four sample types; HCCF compared to Protein A eluate and subsequent cation and anion exchange purification. In the 6 sample iTRAQ experiment, 8781 spectra were confidently matched to peptides from 819 proteins (including the mAb chains). Across both the 6 and 8 sample experiments 936 proteins were identified. In the 8 sample comparison, 4187 spectra were confidently matched to peptides from 219 proteins. We then used the iTRAQ data to enable estimation of the relative change of individual proteins across the purification steps. These data provide the basis for application of iTRAQ for process development based upon knowledge of critical HCPs.
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Affiliation(s)
- Lesley M Chiverton
- Centre for Molecular Processing and School of Biosciences, University of Kent, Canterbury, Kent, UK
| | - Caroline Evans
- ChELSI Institute, Department of Chemical and Biological Engineering, University of Sheffield, Sheffield, UK
| | - Jagroop Pandhal
- ChELSI Institute, Department of Chemical and Biological Engineering, University of Sheffield, Sheffield, UK
| | - Andrew R Landels
- ChELSI Institute, Department of Chemical and Biological Engineering, University of Sheffield, Sheffield, UK
| | | | | | - Phillip C Wright
- ChELSI Institute, Department of Chemical and Biological Engineering, University of Sheffield, Sheffield, UK.
| | - C Mark Smales
- Centre for Molecular Processing and School of Biosciences, University of Kent, Canterbury, Kent, UK.
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42
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Baumann P, Hubbuch J. Downstream process development strategies for effective bioprocesses: Trends, progress, and combinatorial approaches. Eng Life Sci 2016; 17:1142-1158. [PMID: 32624742 DOI: 10.1002/elsc.201600033] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2016] [Revised: 03/09/2016] [Accepted: 04/07/2016] [Indexed: 12/26/2022] Open
Abstract
The biopharmaceutical industry is at a turning point moving toward a more customized and patient-oriented medicine (precision medicine). Straightforward routines such as the antibody platform process are extended to production processes for a new portfolio of molecules. As a consequence, individual and tailored productions require generic approaches for a fast and dedicated purification process development. In this article, different effective strategies in biopharmaceutical purification process development are reviewed that can analogously be used for the new generation of antibodies. Conventional approaches based on heuristics and high-throughput process development are discussed and compared to modern technologies such as multivariate calibration and mechanistic modeling tools. Such approaches constitute a good foundation for fast and effective process development for new products and processes, but their full potential becomes obvious in a correlated combination. Thus, different combinatorial approaches are presented, which might become future directions in the biopharmaceutical industry.
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Affiliation(s)
- Pascal Baumann
- Biomolecular Separation Engineering Karlsruhe Institute of Technology (KIT) Karlsruhe Germany
| | - Jürgen Hubbuch
- Biomolecular Separation Engineering Karlsruhe Institute of Technology (KIT) Karlsruhe Germany
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43
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Jha S, Agarwal S, Sanyal I, Amla DV. Single-Step Purification and Characterization of A Recombinant Serine Proteinase Inhibitor from Transgenic Plants. Appl Biochem Biotechnol 2016; 179:220-36. [PMID: 26852026 DOI: 10.1007/s12010-016-1989-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2015] [Accepted: 01/12/2016] [Indexed: 12/15/2022]
Abstract
Expression of recombinant therapeutic proteins in transgenic plants has a tremendous impact on safe and economical production of biomolecules for biopharmaceutical industry. The major limitation in their production is downstream processing of recombinant protein to obtain higher yield and purity of the final product. In this study, a simple and rapid process has been developed for purification of therapeutic recombinant α1-proteinase inhibitor (rα1-PI) from transgenic tomato plants, which is an abundant serine protease inhibitor in human serum and chiefly inhibits the activity of neutrophil elastase in lungs. We have expressed rα1-PI with modified synthetic gene in transgenic tomato plants at a very high level (≃3.2 % of total soluble protein). The heterologous protein was extracted with (NH4)2SO4 precipitation, followed by chromatographic separation on different matrices. However, only immunoaffinity chromatography resulted into homogenous preparation of rα1-PI with 54 % recovery. The plant-purified rα1-PI showed molecular mass and structural conformation comparable to native serum α1-PI, as shown by mass spectrometry and optical spectroscopy. The results of elastase inhibition assay revealed biological activity of the purified rα1-PI protein. This work demonstrates a simple and efficient one-step purification of rα1-PI from transgenic plants, which is an essential prerequisite for further therapeutic development.
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Affiliation(s)
- Shweta Jha
- Plant Transgenic Lab, Genetics and Molecular Biology Division, CSIR-National Botanical Research Institute, Rana Pratap Marg, P.O. Box 436, Lucknow, 226001, U.P., India. .,Department of Botany (Centre of Advanced Study), Jai Narain Vyas University, Jodhpur, 342001, India.
| | - Saurabh Agarwal
- Plant Transgenic Lab, Genetics and Molecular Biology Division, CSIR-National Botanical Research Institute, Rana Pratap Marg, P.O. Box 436, Lucknow, 226001, U.P., India.,Baylor College of Medicine, Houston, TX, USA
| | - Indraneel Sanyal
- Plant Transgenic Lab, Genetics and Molecular Biology Division, CSIR-National Botanical Research Institute, Rana Pratap Marg, P.O. Box 436, Lucknow, 226001, U.P., India
| | - D V Amla
- Plant Transgenic Lab, Genetics and Molecular Biology Division, CSIR-National Botanical Research Institute, Rana Pratap Marg, P.O. Box 436, Lucknow, 226001, U.P., India
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44
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Kluters S, Wittkopp F, Jöhnck M, Frech C. Application of linear pH gradients for the modeling of ion exchange chromatography: Separation of monoclonal antibody monomer from aggregates. J Sep Sci 2015; 39:663-75. [DOI: 10.1002/jssc.201500994] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2015] [Revised: 10/21/2015] [Accepted: 10/26/2015] [Indexed: 12/19/2022]
Affiliation(s)
- Simon Kluters
- Institute of Biochemistry; Mannheim University of Applied Sciences; Mannheim Germany
| | - Felix Wittkopp
- Institute of Biochemistry; Mannheim University of Applied Sciences; Mannheim Germany
| | - Matthias Jöhnck
- Biopharm Process Solutions; Merck Millipore; Darmstadt Germany
| | - Christian Frech
- Institute of Biochemistry; Mannheim University of Applied Sciences; Mannheim Germany
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45
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Levy NE, Valente KN, Lee KH, Lenhoff AM. Host cell protein impurities in chromatographic polishing steps for monoclonal antibody purification. Biotechnol Bioeng 2015; 113:1260-72. [DOI: 10.1002/bit.25882] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2015] [Revised: 10/19/2015] [Accepted: 11/05/2015] [Indexed: 12/24/2022]
Affiliation(s)
- Nicholas E. Levy
- Department of Chemical and Biomolecular EngineeringUniversity of DelawareNewarkDelaware19716
| | - Kristin N. Valente
- Department of Chemical and Biomolecular EngineeringUniversity of DelawareNewarkDelaware19716
- Delaware Biotechnology InstituteNewarkDelaware19711
| | - Kelvin H. Lee
- Department of Chemical and Biomolecular EngineeringUniversity of DelawareNewarkDelaware19716
- Delaware Biotechnology InstituteNewarkDelaware19711
| | - Abraham M. Lenhoff
- Department of Chemical and Biomolecular EngineeringUniversity of DelawareNewarkDelaware19716
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46
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Hogwood CE, Ahmad SS, Tarrant RD, Bracewell DG, Smales CM. An ultra scale-down approach identifies host cell protein differences across a panel of mAb producing CHO cell line variants. Biotechnol J 2015; 11:415-24. [DOI: 10.1002/biot.201500010] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2015] [Revised: 08/13/2015] [Accepted: 10/15/2015] [Indexed: 01/28/2023]
Affiliation(s)
- Catherine E.M. Hogwood
- Centre for Molecular Processing and School of Biosciences; University of Kent; Canterbury Kent UK
| | - Shahina S. Ahmad
- Advanced Centre for Biochemical Engineering, Department of Biochemical Engineering; University College London; London UK
| | - Richard D. Tarrant
- Advanced Centre for Biochemical Engineering, Department of Biochemical Engineering; University College London; London UK
| | - Daniel G. Bracewell
- Advanced Centre for Biochemical Engineering, Department of Biochemical Engineering; University College London; London UK
| | - C. Mark Smales
- Centre for Molecular Processing and School of Biosciences; University of Kent; Canterbury Kent UK
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47
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Kumar V, Leweke S, von Lieres E, Rathore AS. Mechanistic modeling of ion-exchange process chromatography of charge variants of monoclonal antibody products. J Chromatogr A 2015; 1426:140-53. [DOI: 10.1016/j.chroma.2015.11.062] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2015] [Revised: 11/18/2015] [Accepted: 11/18/2015] [Indexed: 12/29/2022]
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48
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Current advances in the development of high-throughput purification strategies for the generation of therapeutic antibodies. ACTA ACUST UNITED AC 2015. [DOI: 10.4155/pbp.15.23] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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49
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Boulet-Audet M, Byrne B, Kazarian SG. Cleaning-in-place of immunoaffinity resins monitored by in situ ATR-FTIR spectroscopy. Anal Bioanal Chem 2015; 407:7111-22. [PMID: 26159572 PMCID: PMC4551555 DOI: 10.1007/s00216-015-8871-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2015] [Revised: 06/10/2015] [Accepted: 06/18/2015] [Indexed: 12/04/2022]
Abstract
In the next 10 years, the pharmaceutical industry anticipates that revenue from biotherapeutics will overtake those generated from small drug molecules. Despite effectively treating a range of chronic and life-threatening diseases, the high cost of biotherapeutics limits their use. For biotherapeutic monoclonal antibodies (mAbs), an important production cost is the affinity resin used for protein capture. Cleaning-in-place (CIP) protocols aim to optimise the lifespan of the resin by slowing binding capacity decay. Binding assays can determine resin capacity from the mobile phase, but do not reveal the underlying causes of Protein A ligand degradation. The focus needs to be on the stationary phase to examine the effect of CIP on the resin. To directly determine both the local Protein A ligand concentration and conformation on two Protein A resins, we developed a method based on attenuated total reflection (ATR) Fourier transform infrared (FTIR) spectroscopy. ATR-FTIR spectroscopic imaging revealed that applying a carefully controlled load to agarose beads produces an even and reproducible contact with the internal reflection element. This allowed detection and quantification of the binding capacity of the stationary phase. ATR-FTIR spectroscopy also showed that Protein A proteolysis does not seem to occur under typical CIP conditions (below 1 M NaOH). However, our data revealed that concentrations of NaOH above 0.1 M cause significant changes in Protein A conformation. The addition of >0.4 M trehalose during CIP significantly reduced NaOH-induced ligand unfolding observed for one of the two Protein A resins tested. Such insights could help to optimise CIP protocols in order to extend resin lifetime and reduce mAb production costs.
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Affiliation(s)
- Maxime Boulet-Audet
- />Department of Chemical Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ UK
- />Department of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ UK
| | - Bernadette Byrne
- />Department of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ UK
| | - Sergei G. Kazarian
- />Department of Chemical Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ UK
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50
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Bracewell DG, Francis R, Smales CM. The future of host cell protein (HCP) identification during process development and manufacturing linked to a risk-based management for their control. Biotechnol Bioeng 2015; 112:1727-37. [PMID: 25998019 PMCID: PMC4973824 DOI: 10.1002/bit.25628] [Citation(s) in RCA: 110] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2014] [Revised: 03/04/2015] [Accepted: 04/21/2015] [Indexed: 12/14/2022]
Abstract
The use of biological systems to synthesize complex therapeutic products has been a remarkable success. However, during product development, great attention must be devoted to defining acceptable levels of impurities that derive from that biological system, heading this list are host cell proteins (HCPs). Recent advances in proteomic analytics have shown how diverse this class of impurities is; as such knowledge and capability grows inevitable questions have arisen about how thorough current approaches to measuring HCPs are. The fundamental issue is how to adequately measure (and in turn monitor and control) such a large number of protein species (potentially thousands of components) to ensure safe and efficacious products. A rather elegant solution is to use an immunoassay (enzyme-linked immunosorbent assay [ELISA]) based on polyclonal antibodies raised to the host cell (biological system) used to synthesize a particular therapeutic product. However, the measurement is entirely dependent on the antibody serum used, which dictates the sensitivity of the assay and the degree of coverage of the HCP spectrum. It provides one summed analog value for HCP amount; a positive if all HCP components can be considered equal, a negative in the more likely event one associates greater risk with certain components of the HCP proteome. In a thorough risk-based approach, one would wish to be able to account for this. These issues have led to the investigation of orthogonal analytical methods; most prominently mass spectrometry. These techniques can potentially both identify and quantify HCPs. The ability to measure and monitor thousands of proteins proportionally increases the amount of data acquired. Significant benefits exist if the information can be used to determine critical HCPs and thereby create an improved basis for risk management. We describe a nascent approach to risk assessment of HCPs based upon such data, drawing attention to timeliness in relation to biosimilar initiatives. The development of such an approach requires databases based on cumulative knowledge of multiple risk factors that would require national and international regulators, standards authorities (e.g., NIST and NIBSC), industry and academia to all be involved in shaping what is the best approach to the adoption of the latest bioanalytical technology to this area, which is vital to delivering safe efficacious biological medicines of all types.
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Affiliation(s)
- Daniel G Bracewell
- Department of Biochemical Engineering, Advanced Centre for Biochemical Engineering, University College London, Gordon Street, London, WC1H 0AH, UK.
| | | | - C Mark Smales
- Centre for Molecular Processing, School of Biosciences, University of Kent, Canterbury, Kent, UK, CT2 7NJ
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