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Borges Camargo Diniz J, Silva Santana L, Leite M, Silva Santana JL, Magalhães Costa SI, Martins Castro LH, Mota Telles JP. Advancing epilepsy diagnosis: A meta-analysis of artificial intelligence approaches for interictal epileptiform discharge detection. Seizure 2024; 122:80-86. [PMID: 39369555 DOI: 10.1016/j.seizure.2024.09.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Revised: 09/23/2024] [Accepted: 09/24/2024] [Indexed: 10/08/2024] Open
Abstract
INTRODUCTION Interictal epileptiform discharges (IEDs) in electroencephalograms (EEGs) are an important biomarker for epilepsy. Currently, the gold standard for IED detection is the visual analysis performed by experts. However, this process is expert-biased, and time-consuming. Developing fast, accurate, and robust detection methods for IEDs based on EEG may facilitate epilepsy diagnosis. We aim to assess the performance of deep learning (DL) and classic machine learning (ML) algorithms in classifying EEG segments into IED and non-IED categories, as well as distinguishing whether the entire EEG contains IED or not. METHODS We systematically searched PubMed, Embase, and Web of Science following PRISMA guidelines. We excluded studies that only performed the detection of IEDs instead of binary segment classification. Risk of Bias was evaluated with Quality Assessment of Diagnostic Accuracy Studies (QUADAS-2). Meta-analysis with the overall area under the Summary Receiver Operating Characteristic (SROC), sensitivity, and specificity as effect measures, was performed with R software. RESULTS A total of 23 studies, comprising 3,629 patients, were eligible for synthesis. Eighteen models performed discharge-level classification, and 6 whole-EEG classification. For the IED-level classification, 3 models were validated in an external dataset with more than 50 patients and achieved a sensitivity of 84.9 % (95 % CI: 82.3-87.2) and a specificity of 68.7 % (95 % CI: 7.9-98.2). Five studies reported model performance using both internal validation (cross-validation) and external datasets. The meta-analysis revealed higher performance for internal validation, with 90.4 % sensitivity and 99.6 % specificity, compared to external validation, which showed 78.1 % sensitivity and 80.1 % specificity. CONCLUSION Meta-analysis showed higher performance for models validated with resampling methods compared to those using external datasets. Only a minority of models use more robust validation techniques, which often leads to overfitting.
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Affiliation(s)
| | | | | | - João Lucas Silva Santana
- Department of Neurology, Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo, Brazil
| | - Sarah Isabela Magalhães Costa
- Instituto de Neurologia de Goiânia, Brazil Neurological Institute of Goiânia Brazil Department of Neurology Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo, Brazil
| | | | - João Paulo Mota Telles
- Department of Neurology, Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo, Brazil.
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Meijs H, Luykx JJ, van der Vinne N, Breteler R, Gordon E, Sack AT, van Dijk H, Arns M. A Deep Learning-Derived Transdiagnostic Signature Indexing Hypoarousal and Impulse Control: Implications for Treatment Prediction in Psychiatric Disorders. BIOLOGICAL PSYCHIATRY. COGNITIVE NEUROSCIENCE AND NEUROIMAGING 2024:S2451-9022(24)00237-4. [PMID: 39142534 DOI: 10.1016/j.bpsc.2024.07.027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Revised: 07/19/2024] [Accepted: 07/25/2024] [Indexed: 08/16/2024]
Abstract
BACKGROUND Psychiatric disorders are traditionally classified within diagnostic categories, but this approach has limitations. The Research Domain Criteria (RDoC) constitute a research classification system for psychiatric disorders based on dimensions within domains that cut across these psychiatric diagnoses. The overall aim of RDoC is to better understand mental illness in terms of dysfunction in fundamental neurobiological and behavioral systems, leading to better diagnosis, prevention, and treatment. METHODS A unique electroencephalographic feature, referred to as spindling excessive beta, has been studied in relation to impulse control and sleep as part of the arousal/regulatory system RDoC domain. Here, we studied electroencephalographic frontal beta activity as a potential transdiagnostic biomarker capable of diagnosing and predicting impulse control and sleep problems. RESULTS We showed in the first dataset (n = 3279) that the probability of having spindling excessive beta, classified by a deep learning algorithm, was associated with poor sleep maintenance and low daytime impulse control. Furthermore, in 2 additional, independent datasets (iSPOT-A [International Study to Predict Optimized Treatment in ADHD], n = 336; iSPOT-D [International Study to Predict Optimized Treatment in Depression], n = 1008), we revealed that conventional frontocentral beta power and/or spindling excessive beta probability, referred to as Brainmarker-III, is associated with a diagnosis of attention-deficit/hyperactivity disorder, with remission to methylphenidate in children with attention-deficit/hyperactivity disorder in a sex-specific manner, and with remission to antidepressant medication in adults with major depressive disorder in a drug-specific manner. CONCLUSION Our results demonstrate the value of the RDoC approach in psychiatry research for the discovery of biomarkers with diagnostic and treatment prediction capacities.
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Affiliation(s)
- Hannah Meijs
- Research Institute Brainclinics, Brainclinics Foundation, Nijmegen, the Netherlands; Department of Cognitive Neuroscience, Faculty of Psychology and Neuroscience, Maastricht University, Maastricht, the Netherlands.
| | - Jurjen J Luykx
- Research Institute Brainclinics, Brainclinics Foundation, Nijmegen, the Netherlands; Department of Cognitive Neuroscience, Faculty of Psychology and Neuroscience, Maastricht University, Maastricht, the Netherlands
| | | | - Rien Breteler
- Department of Clinical Psychology, Faculty of Social Sciences, Radboud University, Nijmegen, the Netherlands
| | | | - Alexander T Sack
- Department of Cognitive Neuroscience, Faculty of Psychology and Neuroscience, Maastricht University, Maastricht, the Netherlands
| | - Hanneke van Dijk
- Department of Cognitive Neuroscience, Faculty of Psychology and Neuroscience, Maastricht University, Maastricht, the Netherlands; Synaeda Research, Drachten, the Netherlands
| | - Martijn Arns
- Research Institute Brainclinics, Brainclinics Foundation, Nijmegen, the Netherlands; Department of Cognitive Neuroscience, Faculty of Psychology and Neuroscience, Maastricht University, Maastricht, the Netherlands; Stanford Brain Stimulation Laboratory, Stanford University, Palo Alto, California
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Vitt JR, Mainali S. Artificial Intelligence and Machine Learning Applications in Critically Ill Brain Injured Patients. Semin Neurol 2024; 44:342-356. [PMID: 38569520 DOI: 10.1055/s-0044-1785504] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2024]
Abstract
The utilization of Artificial Intelligence (AI) and Machine Learning (ML) is paving the way for significant strides in patient diagnosis, treatment, and prognostication in neurocritical care. These technologies offer the potential to unravel complex patterns within vast datasets ranging from vast clinical data and EEG (electroencephalogram) readings to advanced cerebral imaging facilitating a more nuanced understanding of patient conditions. Despite their promise, the implementation of AI and ML faces substantial hurdles. Historical biases within training data, the challenge of interpreting multifaceted data streams, and the "black box" nature of ML algorithms present barriers to widespread clinical adoption. Moreover, ethical considerations around data privacy and the need for transparent, explainable models remain paramount to ensure trust and efficacy in clinical decision-making.This article reflects on the emergence of AI and ML as integral tools in neurocritical care, discussing their roles from the perspective of both their scientific promise and the associated challenges. We underscore the importance of extensive validation in diverse clinical settings to ensure the generalizability of ML models, particularly considering their potential to inform critical medical decisions such as withdrawal of life-sustaining therapies. Advancement in computational capabilities is essential for implementing ML in clinical settings, allowing for real-time analysis and decision support at the point of care. As AI and ML are poised to become commonplace in clinical practice, it is incumbent upon health care professionals to understand and oversee these technologies, ensuring they adhere to the highest safety standards and contribute to the realization of personalized medicine. This engagement will be pivotal in integrating AI and ML into patient care, optimizing outcomes in neurocritical care through informed and data-driven decision-making.
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Affiliation(s)
- Jeffrey R Vitt
- Department of Neurological Surgery, UC Davis Medical Center, Sacramento, California
| | - Shraddha Mainali
- Department of Neurology, Virginia Commonwealth University, Richmond, Virginia
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Ming Z, Chen D, Gao T, Tang Y, Tu W, Chen J. V2IED: Dual-view learning framework for detecting events of interictal epileptiform discharges. Neural Netw 2024; 172:106136. [PMID: 38266472 DOI: 10.1016/j.neunet.2024.106136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2023] [Revised: 11/20/2023] [Accepted: 01/16/2024] [Indexed: 01/26/2024]
Abstract
Interictal epileptiform discharges (IED) as large intermittent electrophysiological events are associated with various severe brain disorders. Automated IED detection has long been a challenging task, and mainstream methods largely focus on singling out IEDs from backgrounds from the perspective of waveform, leaving normal sharp transients/artifacts with similar waveforms almost unattended. An open issue still remains to accurately detect IED events that directly reflect the abnormalities in brain electrophysiological activities, minimizing the interference from irrelevant sharp transients with similar waveforms only. This study then proposes a dual-view learning framework (namely V2IED) to detect IED events from multi-channel EEG via aggregating features from the two phases: (1) Morphological Feature Learning: directly treating the EEG as a sequence with multiple channels, a 1D-CNN (Convolutional Neural Network) is applied to explicitly learning the deep morphological features; and (2) Spatial Feature Learning: viewing the EEG as a 3D tensor embedding channel topology, a CNN captures the spatial features at each sampling point followed by an LSTM (Long Short-Term Memories) to learn the evolution of these features. Experimental results from a public EEG dataset against the state-of-the-art counterparts indicate that: (1) compared with the existing optimal models, V2IED achieves a larger area under the receiver operating characteristic (ROC) curve in detecting IEDs from normal sharp transients with a 5.25% improvement in accuracy; (2) the introduction of spatial features improves performance by 2.4% in accuracy; and (3) V2IED also performs excellently in distinguishing IEDs from background signals especially benign variants.
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Affiliation(s)
- Zhekai Ming
- School of Computer Science, the Hubei Key Laboratory of Multimedia and Network Communication Engineering, the National Engineering Research Center for Multimedia Software, Wuhan University, Wuhan, 430072, China
| | - Dan Chen
- School of Computer Science, the Hubei Key Laboratory of Multimedia and Network Communication Engineering, the National Engineering Research Center for Multimedia Software, Wuhan University, Wuhan, 430072, China.
| | - Tengfei Gao
- School of Computer Science, the Hubei Key Laboratory of Multimedia and Network Communication Engineering, the National Engineering Research Center for Multimedia Software, Wuhan University, Wuhan, 430072, China
| | - Yunbo Tang
- College of Computer and Data Science, Fuzhou University, Fuzhou, 350108, China
| | - Weiping Tu
- School of Computer Science, the Hubei Key Laboratory of Multimedia and Network Communication Engineering, the National Engineering Research Center for Multimedia Software, Wuhan University, Wuhan, 430072, China
| | - Jingying Chen
- National Engineering Research Center for E-Learning, Central China Normal University, Wuhan 430079, China
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Abdi-Sargezeh B, Shirani S, Sanei S, Took CC, Geman O, Alarcon G, Valentin A. A review of signal processing and machine learning techniques for interictal epileptiform discharge detection. Comput Biol Med 2024; 168:107782. [PMID: 38070202 DOI: 10.1016/j.compbiomed.2023.107782] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2023] [Revised: 11/15/2023] [Accepted: 11/28/2023] [Indexed: 01/10/2024]
Abstract
Brain interictal epileptiform discharges (IEDs), as one of the hallmarks of epileptic brain, are transient events captured by electroencephalogram (EEG). IEDs are generated by seizure networks, and they occur between seizures (interictal periods). The development of a robust method for IED detection could be highly informative for clinical treatment procedures and epileptic patient management. Since 1972, different machine learning techniques, from template matching to deep learning, have been developed to automatically detect IEDs from scalp EEG (scEEG) and intracranial EEG (iEEG). While the scEEG signals suffer from low information details and high attenuation of IEDs due to the high skull electrical impedance, the iEEG signals recorded using implanted electrodes enjoy higher details and are more suitable for identifying the IEDs. In this review paper, we group IED detection techniques into six categories: (1) template matching, (2) feature representation (mimetic, time-frequency, and nonlinear features), (3) matrix decomposition, (4) tensor factorization, (5) neural networks, and (6) estimation of the iEEG from the concurrent scEEG followed by detection and classification. The methods are compared quantitatively (e.g., in terms of accuracy, sensitivity, and specificity), and their general advantages and limitations are described. Finally, current limitations and possible future research paths related to this field are mentioned.
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Affiliation(s)
- Bahman Abdi-Sargezeh
- Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK; School of Science and Technology, Nottingham Trent University, Nottingham, UK.
| | - Sepehr Shirani
- School of Science and Technology, Nottingham Trent University, Nottingham, UK
| | - Saeid Sanei
- School of Science and Technology, Nottingham Trent University, Nottingham, UK
| | - Clive Cheong Took
- Department of Electronic Engineering, Royal Holloway, University of London, London, UK
| | - Oana Geman
- Computer, Electronics and Automation Department, University Stefan cel Mare, Suceava, Romania
| | - Gonzalo Alarcon
- Department of Clinical Neurophysiology, Royal Manchester Children's Hospital, Manchester, UK
| | - Antonio Valentin
- Department of Clinical Neuroscience, King's College London, London, UK
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Wang X, Wang X, Wang C, Wang Z, Liu X, Lv X, Tang Y. A Two-Stage Automatic System for Detection of Interictal Epileptiform Discharges from Scalp Electroencephalograms. eNeuro 2023; 10:ENEURO.0111-23.2023. [PMID: 37914407 PMCID: PMC10668214 DOI: 10.1523/eneuro.0111-23.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Revised: 08/22/2023] [Accepted: 09/15/2023] [Indexed: 11/03/2023] Open
Abstract
The objective of this work was to develop a deep learning-based automatic system with reliable performance in detecting interictal epileptiform discharges (IEDs) from scalp electroencephalograms (EEGs). For the present study, 484 raw scalp EEG recordings were included, standardized, and split into 406 for training and 78 for testing. Two neurophysiologists individually annotated the recordings for training in channel-wise manner. Annotations were divided into segments, on which nine deep neural networks (DNNs) were trained for the multiclassification of IED, artifact, and background. The fitted IED detectors were then evaluated on 78 EEG recordings with IED events fully annotated by three experts independently (majority agreement). A two montage-based decision mechanism (TMDM) was designed to determine whether an IED event occurred at a single time instant. Area under the precision-recall curve (AUPRC), as well as false-positive rates, F1 scores, and kappa agreement scores for sensitivity = 0.8 were estimated. In multitype classification, five DNNs provided one-versus-rest AUPRC mean value >0.993 using fivefold cross-validation. In IED detection, the system that had integrated the temporal convolutional network (TCN)-based IED detector and the TMDM rule achieved an AUPRC of 0.811. The false positive was 0.194/min (11.64/h), and the F1 score was 0.745. The agreement score between the system and the experts was 0.905. The proposed framework provides a TCN-based IED detector and a novel two montage-based determining mechanism that combined to make an automatic IED detection system. The system would be useful in aiding clinic EEG interpretation.
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Affiliation(s)
- Xiaoyun Wang
- Department of Neurology, Nanjing Drum Tower Hospital, The Affiliated Hospital of Nanjing University Medical School, Nanjing 210008, People's Republic of China
| | - Xing Wang
- Department of Signal Processing Research, Beijing Solar Electronic Technologies Company Ltd, Beijing 100044, People's Republic of China
| | - Chong Wang
- Department of Neurology, Nanjing Drum Tower Hospital, The Affiliated Hospital of Nanjing University Medical School, Nanjing 210008, People's Republic of China
| | - Zhongyuan Wang
- Department of Neurology, Nanjing Drum Tower Hospital, The Affiliated Hospital of Nanjing University Medical School, Nanjing 210008, People's Republic of China
| | - Xiangyu Liu
- Department of Neurosurgery, Nanjing Drum Tower Hospital, The Affiliated Hospital of Nanjing University Medical School, Nanjing 210008, People's Republic of China
| | - Xiaoling Lv
- Geriatrics Research Institute of Zhejiang Province, Zhejiang Provincial Key Lab of Geriatrics, Zhejiang Hospital, Hangzhou 310013, People's Republic of China
| | - Ying Tang
- Geriatrics Research Institute of Zhejiang Province, Zhejiang Provincial Key Lab of Geriatrics, Zhejiang Hospital, Hangzhou 310013, People's Republic of China
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7
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Chan HL, Ouyang Y, Huang PJ, Li HT, Chang CW, Chang BL, Hsu WY, Wu T. Deep neural networks for the detection of temporal-lobe epileptiform discharges from scalp electroencephalograms. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2023.104698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
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8
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Chung YG, Lee WJ, Na SM, Kim H, Hwang H, Yun CH, Kim KJ. Deep learning-based automated detection and multiclass classification of focal interictal epileptiform discharges in scalp electroencephalograms. Sci Rep 2023; 13:6755. [PMID: 37185941 PMCID: PMC10130023 DOI: 10.1038/s41598-023-33906-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2023] [Accepted: 04/20/2023] [Indexed: 05/17/2023] Open
Abstract
Detection and spatial distribution analyses of interictal epileptiform discharges (IEDs) are important for diagnosing, classifying, and treating focal epilepsy. This study proposes deep learning-based models to detect focal IEDs in electroencephalography (EEG) recordings of the frontal, temporal, and occipital scalp regions. This study included 38 patients with frontal (n = 15), temporal (n = 13), and occipital (n = 10) IEDs and 232 controls without IEDs from a single tertiary center. All the EEG recordings were segmented into 1.5-s epochs and fed into 1- or 2-dimensional convolutional neural networks to construct binary classification models to detect IEDs in each focal region and multiclass classification models to categorize IEDs into frontal, temporal, and occipital regions. The binary classification models exhibited accuracies of 79.3-86.4%, 93.3-94.2%, and 95.5-97.2% for frontal, temporal, and occipital IEDs, respectively. The three- and four-class models exhibited accuracies of 87.0-88.7% and 74.6-74.9%, respectively, with temporal, occipital, and non-IEDs F1-scores of 89.9-92.3%, 84.9-90.6%, and 84.3-86.0%; and 86.6-86.7%, 86.8-87.2%, and 67.8-69.2% for the three- and four-class (frontal, 50.3-58.2%) models, respectively. The deep learning-based models could help enhance EEG interpretation. Although they performed well, the resolution of region-specific focal IED misinterpretations and further model improvement are needed.
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Affiliation(s)
- Yoon Gi Chung
- Division of Pediatric Neurology, Department of Pediatrics, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam-si, Republic of Korea
| | - Woo-Jin Lee
- Department of Neurology, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam-si, Republic of Korea
| | - Sung Min Na
- Division of Pediatric Neurology, Department of Pediatrics, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam-si, Republic of Korea
| | - Hunmin Kim
- Division of Pediatric Neurology, Department of Pediatrics, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam-si, Republic of Korea.
| | - Hee Hwang
- Division of Pediatric Neurology, Department of Pediatrics, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam-si, Republic of Korea
- Kakao Healthcare, Seongnam-si, Republic of Korea
| | - Chang-Ho Yun
- Department of Neurology, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam-si, Republic of Korea
| | - Ki Joong Kim
- Department of Pediatrics, Seoul National University Children's Hospital, Seoul National University College of Medicine, Seoul, Republic of Korea
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Ein Shoka AA, Dessouky MM, El-Sayed A, Hemdan EED. EEG seizure detection: concepts, techniques, challenges, and future trends. MULTIMEDIA TOOLS AND APPLICATIONS 2023:1-31. [PMID: 37362745 PMCID: PMC10071471 DOI: 10.1007/s11042-023-15052-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Revised: 08/07/2022] [Accepted: 02/27/2023] [Indexed: 06/28/2023]
Abstract
A central nervous system disorder is usually referred to as epilepsy. In epilepsy brain activity becomes abnormal, leading to times of abnormal behavior or seizures, and at times loss of awareness. Consequently, epilepsy patients face problems in daily life due to precautions they must take to adapt to this condition, particularly when they use heavy equipment, e.g., vehicle derivation. Epilepsy studies rely primarily on electroencephalography (EEG) signals to evaluate brain activity during seizures. It is troublesome and time-consuming to manually decide the location of seizures in EEG signals. The automatic detection framework is one of the principal tools to help doctors and patients take appropriate precautions. This paper reviews the epilepsy mentality disorder and the types of seizure, preprocessing operations that are performed on EEG data, a generally extracted feature from the signal, and a detailed view on classification procedures used in this problem and provide insights on the difficulties and future research directions in this innovative theme. Therefore, this paper presents a review of work on recent methods for the epileptic seizure process along with providing perspectives and concepts to researchers to present an automated EEG-based epileptic seizure detection system using IoT and machine learning classifiers for remote patient monitoring in the context of smart healthcare systems. Finally, challenges and open research points in EEG seizure detection are investigated.
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Affiliation(s)
- Athar A. Ein Shoka
- Faculty of Electronic Engineering, Computer Science and Engineering Department, Menoufia University, Menouf, Egypt
| | - Mohamed M. Dessouky
- Faculty of Electronic Engineering, Computer Science and Engineering Department, Menoufia University, Menouf, Egypt
- Department of Computer Science & Artificial Intelligence, College of Computer Science and Engineering, University of Jeddah, Jeddah, Saudi Arabia
| | - Ayman El-Sayed
- Faculty of Electronic Engineering, Computer Science and Engineering Department, Menoufia University, Menouf, Egypt
| | - Ezz El-Din Hemdan
- Faculty of Electronic Engineering, Computer Science and Engineering Department, Menoufia University, Menouf, Egypt
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van Dijk H, Koppenberg M, Arns M. Towards Robust, Reproducible, and Clinically Actionable EEG Biomarkers: Large Open Access EEG Database for Discovery and Out-of-sample Validation. Clin EEG Neurosci 2023; 54:103-105. [PMID: 35975621 DOI: 10.1177/15500594221120516] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Hanneke van Dijk
- Research Institute Brainclinics, Brainclinics Foundation, Nijmegen, the Netherlands.,Faculty of Psychology & Neuroscience, Department of Cognitive Neuroscience, Maastricht University, Maastricht, the Netherlands
| | - Mark Koppenberg
- Research Institute Brainclinics, Brainclinics Foundation, Nijmegen, the Netherlands
| | - Martijn Arns
- Research Institute Brainclinics, Brainclinics Foundation, Nijmegen, the Netherlands.,Faculty of Psychology & Neuroscience, Department of Cognitive Neuroscience, Maastricht University, Maastricht, the Netherlands
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Aanestad E, Gilhus NE, Brogger J. A New Score for Sharp Discharges in the EEG Predicts Epilepsy. J Clin Neurophysiol 2023; 40:9-16. [PMID: 33935218 PMCID: PMC9799053 DOI: 10.1097/wnp.0000000000000849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
Abstract
PURPOSE A challenge in EEG interpretation is to correctly classify suspicious focal sharp activity as epileptiform or not. A predictive score was developed from morphologic features of the first focal sharp discharge, which can help in this decision. METHODS From a clinical standard EEG database, the authors identified 2,063 patients without a previous epilepsy diagnosis who had a focal sharp discharge in their EEG. Morphologic features (amplitude, area of slow wave, etc.) were extracted using an open source one-click algorithm in EEGLAB, masked to clinical classification. A score was developed from these features and validated with the clinical diagnosis of epilepsy over 2 to 6 years of follow-up. Independent external validation was performed in Kural long-term video-EEG monitoring dataset. RESULTS The score for the first focal sharp discharge had a moderate predictive performance for the clinical designation as the EEG being epileptiform (area under the receiver operating characteristics curve = 0.86). Best specificity was 91% and sensitivity 55%. The score also predicted a future epilepsy diagnosis (area under the receiver operating characteristics curve = 0.70). Best specificity was 86% and sensitivity 38%. Validation on the external dataset had an area under the receiver operating characteristics curve = 0.80. Clinical EEG identification of focal interictal epileptiform discharges had an area under the receiver operating characteristics curve = 0.73 for prediction of epilepsy. The score was based on amplitude, slope, difference from background, slow after-wave area, and age. Interrater reproducibility was high (ICC = 0.91). CONCLUSIONS The designation of the first focal sharp discharge as epileptiform depends on reproducible morphologic features. Characteristic features were amplitude, slope, slow after-wave area, and difference from background. The score was predictive of future epilepsy. Halford semiquantitative scale had similar diagnostic performance but lower reproducibility.
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Affiliation(s)
- Eivind Aanestad
- Section for Clinical Neurophysiology, Department of Neurology, Haukeland University Hospital, Bergen, Norway
- Department of Clinical Medicine, University of Bergen, Bergen, Norway
| | - Nils E. Gilhus
- Department of Neurology, Haukeland University Hospital, Bergen, Norway; and
- Department of Clinical Medicine, University of Bergen, Bergen, Norway
| | - Jan Brogger
- Section for Clinical Neurophysiology, Department of Neurology, Haukeland University Hospital, Bergen, Norway
- Department of Clinical Medicine, University of Bergen, Bergen, Norway
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Zhang L, Wang X, Jiang J, Xiao N, Guo J, Zhuang K, Li L, Yu H, Wu T, Zheng M, Chen D. Automatic interictal epileptiform discharge (IED) detection based on convolutional neural network (CNN). Front Mol Biosci 2023; 10:1146606. [PMID: 37091867 PMCID: PMC10119410 DOI: 10.3389/fmolb.2023.1146606] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 03/28/2023] [Indexed: 04/25/2023] Open
Abstract
Clinical diagnosis of epilepsy significantly relies on identifying interictal epileptiform discharge (IED) in electroencephalogram (EEG). IED is generally interpreted manually, and the related process is very time-consuming. Meanwhile, the process is expert-biased, which can easily lead to missed diagnosis and misdiagnosis. In recent years, with the development of deep learning, related algorithms have been used in automatic EEG analysis, but there are still few attempts in IED detection. This study uses the currently most popular convolutional neural network (CNN) framework for EEG analysis for automatic IED detection. The research topic is transferred into a 4-labels classification problem. The algorithm is validated on the long-term EEG of 11 pediatric patients with epilepsy. The computational results confirm that the CNN-based model can obtain high classification accuracy, up to 87%. The study may provide a reference for the future application of deep learning in automatic IED detection.
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Affiliation(s)
- Ling Zhang
- School of Innovation and Entrepreneurship, Hubei University of Science and Technology, Xianning, China
- School of Biomedical Engineering and Medical Imaging, Xianning Medical College, Hubei University of Science and Technology, Xianning, China
| | - Xiaolu Wang
- Department of Clinical Neuroelectrophysiology, Wuhan Children’s Hospital of Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Jun Jiang
- Department of Clinical Neuroelectrophysiology, Wuhan Children’s Hospital of Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
- *Correspondence: Duo Chen, ; Jun Jiang, ; Naian Xiao,
| | - Naian Xiao
- Department of Neurology, The Third Hospital of Xiamen, Xiamen, China
- Department of Neurology and Geriatrics, Fujian Institute of Geriatrics, Fujian Medical University Union Hospital, Fuzhou, China
- *Correspondence: Duo Chen, ; Jun Jiang, ; Naian Xiao,
| | - Jiayang Guo
- National Institute for Data Science in Health and Medicine, Xiamen University, Xiamen, China
- Department of Hematology, School of Medicine, Xiamen University, Xiamen, China
| | - Kailong Zhuang
- National Institute for Data Science in Health and Medicine, Xiamen University, Xiamen, China
- Department of Hematology, School of Medicine, Xiamen University, Xiamen, China
| | - Ling Li
- School of Biomedical Engineering and Medical Imaging, Xianning Medical College, Hubei University of Science and Technology, Xianning, China
| | - Houqiang Yu
- School of Biomedical Engineering and Medical Imaging, Xianning Medical College, Hubei University of Science and Technology, Xianning, China
| | - Tong Wu
- School of Biomedical Engineering and Medical Imaging, Xianning Medical College, Hubei University of Science and Technology, Xianning, China
| | - Ming Zheng
- School of Biomedical Engineering and Medical Imaging, Xianning Medical College, Hubei University of Science and Technology, Xianning, China
| | - Duo Chen
- School of Artificial Intelligence and Information Technology, Nanjing University of Chinese Medicine, Nanjing, China
- *Correspondence: Duo Chen, ; Jun Jiang, ; Naian Xiao,
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13
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Escobar-Ipuz F, Torres A, García-Jiménez M, Basar C, Cascón J, Mateo J. Prediction of patients with idiopathic generalized epilepsy from healthy controls using machine learning from scalp EEG recordings. Brain Res 2022; 1798:148131. [DOI: 10.1016/j.brainres.2022.148131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Revised: 10/14/2022] [Accepted: 10/23/2022] [Indexed: 11/05/2022]
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14
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Hirano R, Emura T, Nakata O, Nakashima T, Asai M, Kagitani-Shimono K, Kishima H, Hirata M. Fully-Automated Spike Detection and Dipole Analysis of Epileptic MEG Using Deep Learning. IEEE TRANSACTIONS ON MEDICAL IMAGING 2022; 41:2879-2890. [PMID: 35536808 DOI: 10.1109/tmi.2022.3173743] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Magnetoencephalography (MEG) is a useful tool for clinically evaluating the localization of interictal spikes. Neurophysiologists visually identify spikes from the MEG waveforms and estimate the equivalent current dipoles (ECD). However, presently, these analyses are manually performed by neurophysiologists and are time-consuming. Another problem is that spike identification from MEG waveforms largely depends on neurophysiologists' skills and experiences. These problems cause poor cost-effectiveness in clinical MEG examination. To overcome these problems, we fully automated spike identification and ECD estimation using a deep learning approach fully automated AI-based MEG interictal epileptiform discharge identification and ECD estimation (FAMED). We applied a semantic segmentation method, which is an image processing technique, to identify the appropriate times between spike onset and peak and to select appropriate sensors for ECD estimation. FAMED was trained and evaluated using clinical MEG data acquired from 375 patients. FAMED training was performed in two stages: in the first stage, a classification network was learned, and in the second stage, a segmentation network that extended the classification network was learned. The classification network had a mean AUC of 0.9868 (10-fold patient-wise cross-validation); the sensitivity and specificity were 0.7952 and 0.9971, respectively. The median distance between the ECDs estimated by the neurophysiologists and those using FAMED was 0.63 cm. Thus, the performance of FAMED is comparable to that of neurophysiologists, and it can contribute to the efficiency and consistency of MEG ECD analysis.
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15
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Najafi T, Jaafar R, Remli R, Wan Zaidi WA. A Classification Model of EEG Signals Based on RNN-LSTM for Diagnosing Focal and Generalized Epilepsy. SENSORS (BASEL, SWITZERLAND) 2022; 22:7269. [PMID: 36236368 PMCID: PMC9571034 DOI: 10.3390/s22197269] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Revised: 09/20/2022] [Accepted: 09/20/2022] [Indexed: 06/16/2023]
Abstract
UNLABELLED Epilepsy is a chronic neurological disorder caused by abnormal neuronal activity that is diagnosed visually by analyzing electroencephalography (EEG) signals. BACKGROUND Surgical operations are the only option for epilepsy treatment when patients are refractory to treatment, which highlights the role of classifying focal and generalized epilepsy syndrome. Therefore, developing a model to be used for diagnosing focal and generalized epilepsy automatically is important. METHODS A classification model based on longitudinal bipolar montage (LB), discrete wavelet transform (DWT), feature extraction techniques, and statistical analysis in feature selection for RNN combined with long short-term memory (LSTM) is proposed in this work for identifying epilepsy. Initially, normal and epileptic LB channels were decomposed into three levels, and 15 various features were extracted. The selected features were extracted from each segment of the signals and fed into LSTM for the classification approach. RESULTS The proposed algorithm achieved a 96.1% accuracy, a 96.8% sensitivity, and a 97.4% specificity in distinguishing normal subjects from subjects with epilepsy. This optimal model was used to analyze the channels of subjects with focal and generalized epilepsy for diagnosing purposes, relying on statistical parameters. CONCLUSIONS The proposed approach is promising, as it can be used to detect epilepsy with satisfactory classification performance and diagnose focal and generalized epilepsy.
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Affiliation(s)
- Tahereh Najafi
- Department of Electrical, Electronics and Systems Engineering, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia
| | - Rosmina Jaafar
- Department of Electrical, Electronics and Systems Engineering, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia
| | - Rabani Remli
- Department of Medicine, Hospital Canselor Tuanku Muhriz, Universiti Kebangsaan Malaysia, Cheras, Kuala Lumpur 56000, Malaysia
| | - Wan Asyraf Wan Zaidi
- Department of Medicine, Hospital Canselor Tuanku Muhriz, Universiti Kebangsaan Malaysia, Cheras, Kuala Lumpur 56000, Malaysia
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16
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Shoeibi A, Moridian P, Khodatars M, Ghassemi N, Jafari M, Alizadehsani R, Kong Y, Gorriz JM, Ramírez J, Khosravi A, Nahavandi S, Acharya UR. An overview of deep learning techniques for epileptic seizures detection and prediction based on neuroimaging modalities: Methods, challenges, and future works. Comput Biol Med 2022; 149:106053. [DOI: 10.1016/j.compbiomed.2022.106053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2022] [Revised: 08/17/2022] [Accepted: 08/17/2022] [Indexed: 02/01/2023]
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17
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van Dijk H, van Wingen G, Denys D, Olbrich S, van Ruth R, Arns M. The two decades brainclinics research archive for insights in neurophysiology (TDBRAIN) database. Sci Data 2022; 9:333. [PMID: 35701407 PMCID: PMC9198070 DOI: 10.1038/s41597-022-01409-z] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Accepted: 05/23/2022] [Indexed: 11/13/2022] Open
Abstract
In neuroscience, electroencephalography (EEG) data is often used to extract features (biomarkers) to identify neurological or psychiatric dysfunction or to predict treatment response. At the same time neuroscience is becoming more data-driven, made possible by computational advances. In support of biomarker development and methodologies such as training Artificial Intelligent (AI) networks we present the extensive Two Decades-Brainclinics Research Archive for Insights in Neurophysiology (TDBRAIN) EEG database. This clinical lifespan database (5-89 years) contains resting-state, raw EEG-data complemented with relevant clinical and demographic data of a heterogenous collection of 1274 psychiatric patients collected between 2001 to 2021. Main indications included are Major Depressive Disorder (MDD; N = 426), attention deficit hyperactivity disorder (ADHD; N = 271), Subjective Memory Complaints (SMC: N = 119) and obsessive-compulsive disorder (OCD; N = 75). Demographic-, personality- and day of measurement data are included in the database. Thirty percent of clinical and treatment outcome data will remain blinded for prospective validation and replication purposes. The TDBRAIN database and code are available on the Brainclinics Foundation website at www.brainclinics.com/resources and on Synapse at www.synapse.org/TDBRAIN .
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Affiliation(s)
- Hanneke van Dijk
- Research Institute Brainclinics, Brainclinics Foundation, Nijmegen, the Netherlands.
- Faculty of Psychology & Neuroscience, Department of Cognitive Neuroscience, Maastricht University, Maastricht, the Netherlands.
| | - Guido van Wingen
- Amsterdam UMC, Department of psychiatry, University of Amsterdam, location AMC, Amsterdam, the Netherlands
| | - Damiaan Denys
- Amsterdam UMC, Department of psychiatry, University of Amsterdam, location AMC, Amsterdam, the Netherlands
| | - Sebastian Olbrich
- Department for Psychiatry, Psychotherapy and Psychosomatics, University Hospital of Psychiatry Zurich, Zurich, Switzerland
| | | | - Martijn Arns
- Research Institute Brainclinics, Brainclinics Foundation, Nijmegen, the Netherlands
- Faculty of Psychology & Neuroscience, Department of Cognitive Neuroscience, Maastricht University, Maastricht, the Netherlands
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18
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Chung YG, Jeon Y, Yoo S, Kim H, Hwang H. Big data analysis and artificial intelligence in epilepsy - common data model analysis and machine learning-based seizure detection and forecasting. Clin Exp Pediatr 2022; 65:272-282. [PMID: 34844397 PMCID: PMC9171464 DOI: 10.3345/cep.2021.00766] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Accepted: 10/27/2021] [Indexed: 11/27/2022] Open
Abstract
There has been significant interest in big data analysis and artificial intelligence (AI) in medicine. Ever-increasing medical data and advanced computing power have enabled the number of big data analyses and AI studies to increase rapidly. Here we briefly introduce epilepsy, big data, and AI and review big data analysis using a common data model. Studies in which AI has been actively applied, such as those of electroencephalography epileptiform discharge detection, seizure detection, and forecasting, will be reviewed. We will also provide practical suggestions for pediatricians to understand and interpret big data analysis and AI research and work together with technical expertise.
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Affiliation(s)
- Yoon Gi Chung
- Division of Pediatric Neurology, Department of Pediatrics, Seoul National University Bundang Hospital, Seongnam, Korea
| | | | - Sooyoung Yoo
- Office of eHealth Research and Business, Seoul National University Bundang Hospital, Seongnam, Korea
| | - Hunmin Kim
- Division of Pediatric Neurology, Department of Pediatrics, Seoul National University Bundang Hospital, Seongnam, Korea.,Department of Pediatrics, Seoul National University College of Medicine, Seoul, Korea
| | - Hee Hwang
- Division of Pediatric Neurology, Department of Pediatrics, Seoul National University Bundang Hospital, Seongnam, Korea.,Department of Pediatrics, Seoul National University College of Medicine, Seoul, Korea
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19
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Song Z, Deng B, Wang J, Yi G. An EEG-based systematic explainable detection framework for probing and localizing abnormal patterns in Alzheimer's disease. J Neural Eng 2022; 19. [PMID: 35453136 DOI: 10.1088/1741-2552/ac697d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Accepted: 04/22/2022] [Indexed: 11/12/2022]
Abstract
OBJECTIVE Electroencephalography (EEG) is a potential source of downstream biomarkers for the early diagnosis of Alzheimer's disease (AD) due to its low-cost, non-invasive, and portable advantages. Accurately detecting AD-induced patterns from EEG signals is essential for understanding AD-related neurodegeneration at the EEG level and further evaluating the risk of AD at an early stage. This paper proposes a deep learning-based, functional explanatory framework that probes AD abnormalities from short-sequence EEG data. APPROACH The framework is a learning-based automatic detection system consisting of three encoding pathways that analyze EEG signals in frequency, complexity, and synchronous domains. We integrated the proposed EEG descriptors with the neural network components into one learning system to detect AD patterns. A transfer learning-based model was used to learn the deep representations, and a modified generative adversarial module was attached to the model to overcome feature sparsity. Furthermore, we utilized activation mapping to obtain the AD-related neurodegeneration at brain rhythm, dynamic complexity, and functional connectivity levels. MAIN RESULTS The proposed framework can accurately (100%) detect AD patterns based on our raw EEG recordings without delicate preprocessing. Meanwhile, the system indicates that 1) the power of different brain rhythms exhibits abnormal in the frontal lobes of AD patients, and such abnormality spreads to central lobes in the alpha and beta rhythms, 2) the difference in nonlinear complexity varies with the temporal scales, and 3) all the connections of pair-wise brain regions except bilateral temporal connectivity are weak in AD patterns. The proposed method outperforms other related methods in detection performance. SIGNIFICANCE We provide a new method for revealing abnormalities and corresponding localizations in different feature domains of EEG from AD patients. This study is a significant foundation for our future work on identifying individuals at high risk of AD at an early stage.
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Affiliation(s)
- Zhenxi Song
- Tianjin University, No.92 Weijin Road, Nankai District, Tianjin 300072, China, Tianjin, 300072, CHINA
| | - Bin Deng
- Tianjin University, No.92 Weijin Road, Nankai District, Tianjin 300072, China, Tianjin, Tianjin, 300072, CHINA
| | - Jiang Wang
- School of Electrical Engineering and Automation, Tianjin University, No.92 Weijin Road, Nankai District, Tianjin 300072, China, P. R. China, Tianjin, Tianjin, 300072, CHINA
| | - Guosheng Yi
- School of Electrical and Information Engineering, Tianjin University, No.92 Weijin Road, Nankai District, Tianjin 300072, China, Tianjin, Tianjin, 300072, CHINA
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20
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Swatzyna RJ, Arns M, Tarnow JD, Turner RP, Barr E, MacInerney EK, Hoffman AM, Boutros NN. Isolated epileptiform activity in children and adolescents: prevalence, relevance, and implications for treatment. Eur Child Adolesc Psychiatry 2022; 31:545-552. [PMID: 32666203 DOI: 10.1007/s00787-020-01597-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Accepted: 07/01/2020] [Indexed: 10/23/2022]
Abstract
In the field of psychiatry diagnoses are primarily based on the report of symptoms from either the patient, parents, or both, and a psychiatrist's observations. A psychiatric diagnosis is currently the most widely used basis for medication selection and the brain is seldom investigated directly as a source of those symptoms. This study addresses the request from the National Institute of Mental Health (NIMH) Research Domain Criteria Project (RDoC) for scientific research into neurological abnormalities that can be linked to psychiatric symptoms for the purpose of predicting medication response. One such neurological abnormality that has been the focus of many studies over the last three decades is isolated epileptiform discharges (IEDs) in children and adolescents without seizures. We conducted a systematic review of the literature to determine prevalence rates of IEDs within diagnostic categories. We then compared the prevalence of IEDs in the selected literature to our IRB-approved data archive. Our study found a consistent high prevalence of IEDs specifically for ADHD (majority > 25%) and ASD (majority > 59%), and consistent low prevalence rates were found for Depression (3%). If children and adolescents have failed multiple medication attempts, and more than one-third of them have IEDs, then an EEG would be justified within the RDoC paradigm.
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Affiliation(s)
- Ronald J Swatzyna
- Houston Neuroscience Brain Center, Houston, TX, USA. .,Clinical NeuroAnalytics, 1307 Oceanside Lane, League City, TX, 77573, USA.
| | - Martijn Arns
- Department of Experimental Psychology, Utrecht University, Utrecht, The Netherlands.,Research Institute Brainclinics, Brainclinics Foundation, Nijmegen, The Netherlands
| | - Jay D Tarnow
- The Tarnow Center for Self-Management, Houston, USA
| | - Robert P Turner
- Network Neurology Health, Charleston, SC, USA.,Clinical Pediatrics and Neurology, USC School of Medicine, Columbia, SC, USA
| | - Emma Barr
- Houston Neuroscience Brain Center, Houston, TX, USA
| | | | | | - Nash N Boutros
- School of Medicine, RUSH University, Kansas City, MO, USA
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21
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Detection of Epilepsy in EEGs Using Deep Sequence Models – A Comparative Study. PATTERN RECOGNITION AND IMAGE ANALYSIS 2022. [DOI: 10.1007/978-3-031-04881-4_16] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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22
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Abdi-Sargezeh B, Valentin A, Alarcon G, Martin-Lopez D, Sanei S. Higher-order tensor decomposition based scalp-to-intracranial EEG projection for detection of interictal epileptiform discharges. J Neural Eng 2021; 18. [PMID: 34818640 DOI: 10.1088/1741-2552/ac3cc4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Accepted: 11/24/2021] [Indexed: 11/12/2022]
Abstract
Objective.Interictal epileptiform discharges (IEDs) occur between two seizures onsets. IEDs are mainly captured by intracranial recordings and are often invisible over the scalp. This study proposes a model based on tensor factorization to map the time-frequency (TF) features of scalp EEG (sEEG) to the TF features of intracranial EEG (iEEG) in order to detect IEDs from over the scalp with high sensitivity.Approach.Continuous wavelet transform is employed to extract the TF features. Time, frequency, and channel modes of IED segments from iEEG recordings are concatenated into a four-way tensor. Tucker and CANDECOMP/PARAFAC decomposition techniques are employed to decompose the tensor into temporal, spectral, spatial, and segmental factors. Finally, TF features of both IED and non-IED segments from scalp recordings are projected onto the temporal components for classification.Main results.The model performance is obtained in two different approaches: within- and between-subject classification approaches. Our proposed method is compared with four other methods, namely a tensor-based spatial component analysis method, TF-based method, linear regression mapping model, and asymmetric-symmetric autoencoder mapping model followed by convolutional neural networks. Our proposed method outperforms all these methods in both within- and between-subject classification approaches by respectively achieving 84.2% and 72.6% accuracy values.Significance.The findings show that mapping sEEG to iEEG improves the performance of the scalp-based IED detection model. Furthermore, the tensor-based mapping model outperforms the autoencoder- and regression-based mapping models.
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Affiliation(s)
- Bahman Abdi-Sargezeh
- School of Science and Technology, Nottingham Trent University, Nottingham, United Kingdom
| | - Antonio Valentin
- Department of Clinical Neuroscience, King's College London, London, United Kingdom
| | - Gonzalo Alarcon
- Department of Neurology, Hamad General Hospital, Doha, Qatar
| | | | - Saeid Sanei
- School of Science and Technology, Nottingham Trent University, Nottingham, United Kingdom
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23
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Quon RJ, Meisenhelter S, Camp EJ, Testorf ME, Song Y, Song Q, Culler GW, Moein P, Jobst BC. AiED: Artificial intelligence for the detection of intracranial interictal epileptiform discharges. Clin Neurophysiol 2021; 133:1-8. [PMID: 34773796 DOI: 10.1016/j.clinph.2021.09.018] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Revised: 09/02/2021] [Accepted: 09/21/2021] [Indexed: 11/03/2022]
Abstract
OBJECTIVE Deep learning provides an appealing solution for the ongoing challenge of automatically classifying intracranial interictal epileptiform discharges (IEDs). We report results from an automated method consisting of a template-matching algorithm and convolutional neural network (CNN) for the detection of intracranial IEDs ("AiED"). METHODS 1000 intracranial electroencephalogram (EEG) epochs extracted randomly from 307 subjects with refractory epilepsy were annotated independently by two expert neurophysiologists. These annotated epochs were divided into 1062 two-second epochs with IEDs and 1428 two-second epochs without IEDs, which were transformed into spectrograms prior to training the neural network. The highest performing network was validated on an annotated external test set. RESULTS The final network had an F1-score of 0.95 (95% CI: 0.91-0.98) and an average Area Under the Receiver Operating Characteristic of 0.98 (95% CI: 0.96-1.00). For the external test set, it showed an overall F1-score of 0.71, correctly identifying 100% of all high-amplitude IED complexes, 96.23% of all high-amplitude isolated IEDs, and 66.15% of all IEDs of atypical morphology. CONCLUSIONS Template-matching combined with a CNN offers a fast, robust method for detecting intracranial IEDs. SIGNIFICANCE "AiED" is generalizable and achieves comparable performance to human reviewers; it may support clinical and research EEG analyses.
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Affiliation(s)
- Robert J Quon
- Department of Neurology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA; Department of Quantitative Biomedical Sciences, Geisel School of Medicine at Dartmouth, Hanover, NH, USA.
| | | | - Edward J Camp
- Department of Neurology, Dartmouth-Hitchcock Medical Center, Lebanon, NH, USA.
| | - Markus E Testorf
- Department of Neurology, Dartmouth-Hitchcock Medical Center, Lebanon, NH, USA; Thayer School of Engineering at Dartmouth College, Hanover, NH, USA.
| | - Yinchen Song
- Department of Neurology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA; Department of Neurology, Dartmouth-Hitchcock Medical Center, Lebanon, NH, USA.
| | - Qingyuan Song
- Department of Quantitative Biomedical Sciences, Geisel School of Medicine at Dartmouth, Hanover, NH, USA.
| | - George W Culler
- Department of Neurology, Dartmouth-Hitchcock Medical Center, Lebanon, NH, USA.
| | - Payam Moein
- Department of Neurology, Dartmouth-Hitchcock Medical Center, Lebanon, NH, USA.
| | - Barbara C Jobst
- Department of Neurology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA; Department of Neurology, Dartmouth-Hitchcock Medical Center, Lebanon, NH, USA.
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24
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Vorderwülbecke BJ, Baroumand AG, Spinelli L, Seeck M, van Mierlo P, Vulliémoz S. Automated interictal source localisation based on high-density EEG. Seizure 2021; 92:244-251. [PMID: 34626920 DOI: 10.1016/j.seizure.2021.09.020] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2021] [Revised: 09/25/2021] [Accepted: 09/29/2021] [Indexed: 11/26/2022] Open
Abstract
PURPOSE To study the accuracy of automated interictal EEG source localisation based on high-density EEG, and to compare it to low-density EEG. METHODS Thirty patients operated for pharmacoresistant focal epilepsy were retrospectively examined. Twelve months after resective brain surgery, 18 were seizure-free or had 'auras' only, while 12 had persistence of disabling seizures. Presurgical 257-channel EEG lasting 3-20 h was down-sampled to 25, 40, and 204 channels for separate analyses. For each electrode setup, interictal spikes were detected, clustered, and averaged automatically before validation by an expert reviewer. An individual 6-layer finite difference head model and the standardised low-resolution electromagnetic tomography were used to localise the maximum source activity of the most prevalent spike. Sublobar concordance with the resected brain area was visually assessed and related to favourable vs. unfavourable postsurgical outcome. RESULTS Depending on the EEG setup, epileptic spikes were detected in 21-24 patients (70-80%). The median number of single spikes per average was 470 (range 17-15,066). Diagnostic sensitivity of EEG source localisation was 58-75%, specificity was 50-67%, and overall accuracy was 55-71%. There were no significant differences between low- and high-density EEG setups with 25 to 257 electrodes. CONCLUSION Automated high-density EEG source localisation provides meaningful information in the majority of cases. With hundreds of single spikes averaged, diagnostic accuracy is similar in high- and low-density EEG. Therefore, low-density EEG may be sufficient for interictal EEG source localisation if high numbers of spikes are available.
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Affiliation(s)
- Bernd J Vorderwülbecke
- EEG and Epilepsy Unit, University Hospitals and Faculty of Medicine, University of Geneva, Rue Gabrielle-Perret-Gentil 4, 1205 Geneva, Switzerland; Epilepsy-Center Berlin-Brandenburg, Department of Neurology, Charité - Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany.
| | - Amir G Baroumand
- Medical Image and Signal Processing Group, Department of Electronics and Information Systems, Ghent University, Corneel Heymanslaan 10, 9000 Ghent, Belgium; Epilog NV, Vlasgaardstraat 52, 9000 Ghent, Belgium
| | - Laurent Spinelli
- EEG and Epilepsy Unit, University Hospitals and Faculty of Medicine, University of Geneva, Rue Gabrielle-Perret-Gentil 4, 1205 Geneva, Switzerland
| | - Margitta Seeck
- EEG and Epilepsy Unit, University Hospitals and Faculty of Medicine, University of Geneva, Rue Gabrielle-Perret-Gentil 4, 1205 Geneva, Switzerland
| | - Pieter van Mierlo
- Medical Image and Signal Processing Group, Department of Electronics and Information Systems, Ghent University, Corneel Heymanslaan 10, 9000 Ghent, Belgium; Epilog NV, Vlasgaardstraat 52, 9000 Ghent, Belgium
| | - Serge Vulliémoz
- EEG and Epilepsy Unit, University Hospitals and Faculty of Medicine, University of Geneva, Rue Gabrielle-Perret-Gentil 4, 1205 Geneva, Switzerland
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25
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Baumgartner C, Hafner S, Koren JP. [Automatic detection of epileptiform potentials and seizures in the EEG]. FORTSCHRITTE DER NEUROLOGIE-PSYCHIATRIE 2021; 89:445-458. [PMID: 34525483 DOI: 10.1055/a-1370-3058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
Automatic computer-based algorithms for the detection of epileptiform potentials and seizure patterns on EEG facilitate a time-saving, objective method of quantitative EEG interpretation which is available 7/24. For the automatic detection of interictal epileptiform potentials sensitivities range from 65 to 99% with false positive detections of 0,09 to 13,4 per minute. Recent studies documented equal or even better performance of automatic spike detection programs compared with experienced human EEG readers. The seizure detection problem-one of the major problems in clinical epileptology-consists of the fact that the majority of focal onset seizures with impaired awareness and of seizures arising out of sleep occur unnoticed by patients and their caregivers. Automatic seizure detection systems could facilitate objective seizure documentation and thus help to solve the seizure detection problem. Furthermore, seizure detection systems may help to prevent seizure-related injuries and sudden unexpected death in epilepsy (SUDEP), and could be an integral part of novel, seizure-triggered on-demand therapies in epilepsy. During long-term video-EEG monitoring seizure detection systems could improve patient safety, provide a time-saving objective and reproducible analysis of seizure patterns and facilitate automatic computer-based patient testing during seizures. Sensitivities of seizure detection systems range from 75 to 90% with extratemporal seizures being more difficult to detect than temporal seizures. The false positive alarm rate ranges from 0,1 to 5 per 24 hours. Finally, machine learning algorithms, especially deep learning approaches, open a new highly promising era in automatic spike and seizure detection.
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27
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Gibbon S, Attaheri A, Ní Choisdealbha Á, Rocha S, Brusini P, Mead N, Boutris P, Olawole-Scott H, Ahmed H, Flanagan S, Mandke K, Keshavarzi M, Goswami U. Machine learning accurately classifies neural responses to rhythmic speech vs. non-speech from 8-week-old infant EEG. BRAIN AND LANGUAGE 2021; 220:104968. [PMID: 34111684 PMCID: PMC8358977 DOI: 10.1016/j.bandl.2021.104968] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Revised: 05/11/2021] [Accepted: 05/13/2021] [Indexed: 05/10/2023]
Abstract
Currently there are no reliable means of identifying infants at-risk for later language disorders. Infant neural responses to rhythmic stimuli may offer a solution, as neural tracking of rhythm is atypical in children with developmental language disorders. However, infant brain recordings are noisy. As a first step to developing accurate neural biomarkers, we investigate whether infant brain responses to rhythmic stimuli can be classified reliably using EEG from 95 eight-week-old infants listening to natural stimuli (repeated syllables or drumbeats). Both Convolutional Neural Network (CNN) and Support Vector Machine (SVM) approaches were employed. Applied to one infant at a time, the CNN discriminated syllables from drumbeats with a mean AUC of 0.87, against two levels of noise. The SVM classified with AUC 0.95 and 0.86 respectively, showing reduced performance as noise increased. Our proof-of-concept modelling opens the way to the development of clinical biomarkers for language disorders related to rhythmic entrainment.
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Affiliation(s)
- Samuel Gibbon
- Centre for Neuroscience in Education, Department of Psychology, University of Cambridge, UK.
| | - Adam Attaheri
- Centre for Neuroscience in Education, Department of Psychology, University of Cambridge, UK
| | - Áine Ní Choisdealbha
- Centre for Neuroscience in Education, Department of Psychology, University of Cambridge, UK
| | - Sinead Rocha
- Centre for Neuroscience in Education, Department of Psychology, University of Cambridge, UK
| | - Perrine Brusini
- Centre for Neuroscience in Education, Department of Psychology, University of Cambridge, UK
| | - Natasha Mead
- Centre for Neuroscience in Education, Department of Psychology, University of Cambridge, UK
| | - Panagiotis Boutris
- Centre for Neuroscience in Education, Department of Psychology, University of Cambridge, UK
| | - Helen Olawole-Scott
- Centre for Neuroscience in Education, Department of Psychology, University of Cambridge, UK
| | - Henna Ahmed
- Centre for Neuroscience in Education, Department of Psychology, University of Cambridge, UK
| | - Sheila Flanagan
- Centre for Neuroscience in Education, Department of Psychology, University of Cambridge, UK
| | - Kanad Mandke
- Centre for Neuroscience in Education, Department of Psychology, University of Cambridge, UK
| | - Mahmoud Keshavarzi
- Centre for Neuroscience in Education, Department of Psychology, University of Cambridge, UK; Department of Bioengineering and Centre for Neurotechnology, Imperial College London, UK
| | - Usha Goswami
- Centre for Neuroscience in Education, Department of Psychology, University of Cambridge, UK
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Chakrabarti S, Swetapadma A, Pattnaik PK. A channel independent generalized seizure detection method for pediatric epileptic seizures. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2021; 209:106335. [PMID: 34390934 DOI: 10.1016/j.cmpb.2021.106335] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Accepted: 07/27/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND AND OBJECTIVE Epilepsy the disorder of the central nervous system has its worldwide presence in roughly 50 million people as estimated by the World Health Organization. Electroencephalogram (EEG) is one of the most common and non-invasive ways of analyzing and studying the subtle changes in neuronal activity of the brain during an epileptic seizure attack. These changes can be analyzed for developing an automated system that would assert the chances of an impending seizure. As changeable nature of seizure affects the patients from having a normal life, hence progress in developing new methods will improve the quality of life and also provide assistance in the medical sector. Objective of the proposed method is to avoid EEG channel selection and use all input EEG channel features to design a generalized epileptic seizure detection framework. METHOD In this work, a long short-term memory network has been proposed that is not complex and has the capability of effectively detecting epileptic seizures from both non-invasive and invasive electroencephalogram recordings. The proposed framework is simple and effective and designed in such capacity that raw electroencephalogram signals can be used to detect seizures. Also, a generalized approach has been followed that is channel independent such that EEG signals belonging to any hemisphere of the brain can be detected effectively by the proposed architecture. RESULTS The automated seizure detection system achieved high seizure detection sensitivity of 99.9%, and a low false-positive rate of 0.003 per hour for the Children's Hospital Boston-Massachusetts Institute of Technology dataset. While for the Sleep-Wake-Epilepsy-Center of the University Department of Neurology at the Inselspital Bern dataset, the sensitivity is 99.4% and false-positive rate of 0.006 per hour. Convergence analysis of the proposed model provides a significant amount of reliability and correctness in the efficient detection of epileptic seizures. CONCLUSION Assessment of the proposed framework on non-invasive as well as invasive EEG signals showed that the framework worked well for different type of EEG recordings as different metrics gave satisfactory results. As the framework is simple and did not require any additional parameter optimization techniques, it reduced the processing overheads without affecting the accuracy. Hence, it can be used as an efficient method for monitoring epileptic seizures.
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Affiliation(s)
- Satarupa Chakrabarti
- School of Computer Engineering, KIIT University, Bhubaneswar, Odisha 751024, India
| | - Aleena Swetapadma
- School of Computer Engineering, KIIT University, Bhubaneswar, Odisha 751024, India.
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He H, Liu X, Hao Y. A progressive deep wavelet cascade classification model for epilepsy detection. Artif Intell Med 2021; 118:102117. [PMID: 34412840 DOI: 10.1016/j.artmed.2021.102117] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2020] [Revised: 04/11/2021] [Accepted: 05/21/2021] [Indexed: 12/27/2022]
Abstract
Automatic epileptic seizure detection according to EEG recordings is helpful for neurologists to identify an epilepsy occurrence in the initial anti-epileptic treatment. To quickly and accurately detect epilepsy, we proposed a progressive deep wavelet cascade classification model (PDWC) based on the discrete wavelet transform (DWT) and Random Forest (RF). Different from current deep networks, the PDWC mimics the progressive object identification process of human beings with recognition cycles. In every cycle, enhanced wavelet energy features at a specific scale were extracted by DWT and input into a set of cascade RF classifiers to realize one recognition. The recognition accuracy of PDWC is gradually improved by the fusion of classification results produced by multiple recognition cycles. Moreover, the cascade structure of PDWC can be automatically determined by the classification accuracy increment between layers. To verify the performance of the PDWC, we respectively applied five traditional schemes and four deep learning schemes to four public datasets. The results show that the PDWC is not only superior than five traditional schemes, including KNN, Bayes, DT, SVM, and RF, but also better than deep learning methods, i.e. convolutional neural network (CNN), Long Short-Term Memory (LSTM), multi-Grained Cascade Forest (gcForest) and wavelet cascade model (WCM). The mean accuracy of PDWC for all subjects of all datasets reaches to 0.9914. With a flexible structure and less parameters, the PDWC is more suitable for the epilepsy detection of diverse EEG signals.
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Affiliation(s)
- Hong He
- School of Medical Instrument and Food Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China.
| | - Xinyue Liu
- College of Information, Mechanical and Electrical Engineering, Shanghai Normal University, Shanghai 200234, China
| | - Yong Hao
- Department of Neurology, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China
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30
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Clarke S, Karoly PJ, Nurse E, Seneviratne U, Taylor J, Knight-Sadler R, Kerr R, Moore B, Hennessy P, Mendis D, Lim C, Miles J, Cook M, Freestone DR, D'Souza W. Computer-assisted EEG diagnostic review for idiopathic generalized epilepsy. Epilepsy Behav 2021; 121:106556. [PMID: 31676240 DOI: 10.1016/j.yebeh.2019.106556] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/24/2019] [Revised: 08/27/2019] [Accepted: 09/09/2019] [Indexed: 11/25/2022]
Abstract
Epilepsy diagnosis can be costly, time-consuming, and not uncommonly inaccurate. The reference standard diagnostic monitoring is continuous video-electroencephalography (EEG) monitoring, ideally capturing all events or concordant interictal discharges. Automating EEG data review would save time and resources, thus enabling more people to receive reference standard monitoring and also potentially heralding a more quantitative approach to therapeutic outcomes. There is substantial research into the automated detection of seizures and epileptic activity from EEG. However, automated detection software is not widely used in the clinic, and despite numerous published algorithms, few methods have regulatory approval for detecting epileptic activity from EEG. This study reports on a deep learning algorithm for computer-assisted EEG review. Deep convolutional neural networks were trained to detect epileptic discharges using a preexisting dataset of over 6000 labelled events in a cohort of 103 patients with idiopathic generalized epilepsy (IGE). Patients underwent 24-hour ambulatory outpatient EEG, and all data were curated and confirmed independently by two epilepsy specialists (Seneviratne et al., 2016). The resulting automated detection algorithm was then used to review diagnostic scalp EEG for seven patients (four with IGE and three with events mimicking seizures) to validate performance in a clinical setting. The automated detection algorithm showed state-of-the-art performance for detecting epileptic activity from clinical EEG, with mean sensitivity of >95% and corresponding mean false positive rate of 1 detection per minute. Importantly, diagnostic case studies showed that the automated detection algorithm reduced human review time by 80%-99%, without compromising event detection or diagnostic accuracy. The presented results demonstrate that computer-assisted review can increase the speed and accuracy of EEG assessment and has the potential to greatly improve therapeutic outcomes. This article is part of the Special Issue "NEWroscience 2018".
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Affiliation(s)
- Shannon Clarke
- Seer Medical, 278 Queensberry St., Melbourne, VIC 3000, Australia.
| | - Philippa J Karoly
- Seer Medical, 278 Queensberry St., Melbourne, VIC 3000, Australia; Graeme Clark Institute, The University of Melbourne, Building 261, 203 Bouverie Street, Carlton, VIC 3053, Australia
| | - Ewan Nurse
- Seer Medical, 278 Queensberry St., Melbourne, VIC 3000, Australia; Department of Medicine, St. Vincent's Hospital, The University of Melbourne, VIC 3010, Australia
| | - Udaya Seneviratne
- Department of Medicine, St. Vincent's Hospital, The University of Melbourne, VIC 3010, Australia; Department of Medicine, School of Clinical Sciences at Monash Health, Monash University, VIC 3800, Australia
| | - Janelle Taylor
- Seer Medical, 278 Queensberry St., Melbourne, VIC 3000, Australia
| | | | - Robert Kerr
- Seer Medical, 278 Queensberry St., Melbourne, VIC 3000, Australia
| | - Braden Moore
- Seer Medical, 278 Queensberry St., Melbourne, VIC 3000, Australia
| | - Patrick Hennessy
- Seer Medical, 278 Queensberry St., Melbourne, VIC 3000, Australia
| | - Dulini Mendis
- Seer Medical, 278 Queensberry St., Melbourne, VIC 3000, Australia
| | - Claire Lim
- Department of Medicine, St. Vincent's Hospital, The University of Melbourne, VIC 3010, Australia
| | - Jake Miles
- Department of Medicine, St. Vincent's Hospital, The University of Melbourne, VIC 3010, Australia
| | - Mark Cook
- Graeme Clark Institute, The University of Melbourne, Building 261, 203 Bouverie Street, Carlton, VIC 3053, Australia
| | - Dean R Freestone
- Seer Medical, 278 Queensberry St., Melbourne, VIC 3000, Australia
| | - Wendyl D'Souza
- Department of Medicine, St. Vincent's Hospital, The University of Melbourne, VIC 3010, Australia
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31
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Wei B, Zhao X, Shi L, Xu L, Liu T, Zhang J. A deep learning framework with multi-perspective fusion for interictal epileptiform discharges detection in scalp electroencephalogram. J Neural Eng 2021; 18. [PMID: 34157696 DOI: 10.1088/1741-2552/ac0d60] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Accepted: 06/22/2021] [Indexed: 11/11/2022]
Abstract
Objective.Interictal epileptiform discharges (IEDs) are an important and widely accepted biomarker used in the diagnosis of epilepsy based on scalp electroencephalography (EEG). Because the visual detection of IEDs has various limitations, including high time consumption and high subjectivity, a faster, more robust, and automated IED detector is strongly in demand.Approach.Based on deep learning, we proposed an end-to-end framework with multi-scale morphologic features in the time domain and correlation in sensor space to recognize IEDs from raw scalp EEG.Main Results.Based on a balanced dataset of 30 patients with epilepsy, the results of the five-fold (leave-6-patients-out) cross-validation shows that our model achieved state-of-the-art detection performance (accuracy: 0.951, precision: 0.973, sensitivity: 0.938, specificity: 0.968, F1 score: 0.954, AUC: 0.973). Furthermore, our model maintained excellent IED detection rates in an independent test on three datasets.Significance.The proposed model could be used to assist neurologists in clinical EEG interpretation of patients with epilepsy. Additionally, this approach combines multi-level output and correlation among EEG sensors and provides new ideas for epileptic biomarker detection in scalp EEG.
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Affiliation(s)
- Boxuan Wei
- School of Biological Science and Medical Engineering, Beihang University, Beijing 100191, People's Republic of China.,Heifei Innovation Research Institute, Beihang University, Hefei 230012, People's Republic of China.,Beijing Advanced Innovation Centre for Biomedical Engineering, Beihang University, Beijing 100191, People's Republic of China.,Beijing Advanced Innovation Centre for Big Data-Based Precision Medicine, Beihang University, Beijing 100191, People's Republic of China
| | - Xiaohui Zhao
- School of Biological Science and Medical Engineering, Beihang University, Beijing 100191, People's Republic of China.,Beijing Advanced Innovation Centre for Biomedical Engineering, Beihang University, Beijing 100191, People's Republic of China.,Beijing Advanced Innovation Centre for Big Data-Based Precision Medicine, Beihang University, Beijing 100191, People's Republic of China
| | - Lijuan Shi
- School of Biological Science and Medical Engineering, Beihang University, Beijing 100191, People's Republic of China.,Beijing Advanced Innovation Centre for Big Data-Based Precision Medicine, Beihang University, Beijing 100191, People's Republic of China
| | - Lu Xu
- School of Biological Science and Medical Engineering, Beihang University, Beijing 100191, People's Republic of China.,Beijing Advanced Innovation Centre for Biomedical Engineering, Beihang University, Beijing 100191, People's Republic of China
| | - Tao Liu
- School of Biological Science and Medical Engineering, Beihang University, Beijing 100191, People's Republic of China
| | - Jicong Zhang
- School of Biological Science and Medical Engineering, Beihang University, Beijing 100191, People's Republic of China.,Heifei Innovation Research Institute, Beihang University, Hefei 230012, People's Republic of China.,Beijing Advanced Innovation Centre for Biomedical Engineering, Beihang University, Beijing 100191, People's Republic of China.,Beijing Advanced Innovation Centre for Big Data-Based Precision Medicine, Beihang University, Beijing 100191, People's Republic of China
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32
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Thangavel P, Thomas J, Peh WY, Jing J, Yuvaraj R, Cash SS, Chaudhari R, Karia S, Rathakrishnan R, Saini V, Shah N, Srivastava R, Tan YL, Westover B, Dauwels J. Time-Frequency Decomposition of Scalp Electroencephalograms Improves Deep Learning-Based Epilepsy Diagnosis. Int J Neural Syst 2021; 31:2150032. [PMID: 34278972 DOI: 10.1142/s0129065721500325] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Epilepsy diagnosis based on Interictal Epileptiform Discharges (IEDs) in scalp electroencephalograms (EEGs) is laborious and often subjective. Therefore, it is necessary to build an effective IED detector and an automatic method to classify IED-free versus IED EEGs. In this study, we evaluate features that may provide reliable IED detection and EEG classification. Specifically, we investigate the IED detector based on convolutional neural network (ConvNet) with different input features (temporal, spectral, and wavelet features). We explore different ConvNet architectures and types, including 1D (one-dimensional) ConvNet, 2D (two-dimensional) ConvNet, and noise injection at various layers. We evaluate the EEG classification performance on five independent datasets. The 1D ConvNet with preprocessed full-frequency EEG signal and frequency bands (delta, theta, alpha, beta) with Gaussian additive noise at the output layer achieved the best IED detection results with a false detection rate of 0.23/min at 90% sensitivity. The EEG classification system obtained a mean EEG classification Leave-One-Institution-Out (LOIO) cross-validation (CV) balanced accuracy (BAC) of 78.1% (area under the curve (AUC) of 0.839) and Leave-One-Subject-Out (LOSO) CV BAC of 79.5% (AUC of 0.856). Since the proposed classification system only takes a few seconds to analyze a 30-min routine EEG, it may help in reducing the human effort required for epilepsy diagnosis.
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Affiliation(s)
| | | | | | - Jin Jing
- Massachusetts General Hospital and Harvard Medical School, USA
| | - Rajamanickam Yuvaraj
- Nanyang Technological University, Singapore.,National Institute of Education, Singapore
| | - Sydney S Cash
- Massachusetts General Hospital and Harvard Medical School, USA
| | | | - Sagar Karia
- Lokmanya Tilak Municipal General Hospital, India
| | | | - Vinay Saini
- Department of Biosciences and Bioengineering, IIT Bombay, India
| | - Nilesh Shah
- Lokmanya Tilak Municipal General Hospital, India
| | | | | | | | - Justin Dauwels
- Nanyang Technological University, Singapore.,Delft University of Technology, Netherlands
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33
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Shoeibi A, Khodatars M, Ghassemi N, Jafari M, Moridian P, Alizadehsani R, Panahiazar M, Khozeimeh F, Zare A, Hosseini-Nejad H, Khosravi A, Atiya AF, Aminshahidi D, Hussain S, Rouhani M, Nahavandi S, Acharya UR. Epileptic Seizures Detection Using Deep Learning Techniques: A Review. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:5780. [PMID: 34072232 PMCID: PMC8199071 DOI: 10.3390/ijerph18115780] [Citation(s) in RCA: 99] [Impact Index Per Article: 33.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/21/2021] [Revised: 05/14/2021] [Accepted: 05/15/2021] [Indexed: 02/06/2023]
Abstract
A variety of screening approaches have been proposed to diagnose epileptic seizures, using electroencephalography (EEG) and magnetic resonance imaging (MRI) modalities. Artificial intelligence encompasses a variety of areas, and one of its branches is deep learning (DL). Before the rise of DL, conventional machine learning algorithms involving feature extraction were performed. This limited their performance to the ability of those handcrafting the features. However, in DL, the extraction of features and classification are entirely automated. The advent of these techniques in many areas of medicine, such as in the diagnosis of epileptic seizures, has made significant advances. In this study, a comprehensive overview of works focused on automated epileptic seizure detection using DL techniques and neuroimaging modalities is presented. Various methods proposed to diagnose epileptic seizures automatically using EEG and MRI modalities are described. In addition, rehabilitation systems developed for epileptic seizures using DL have been analyzed, and a summary is provided. The rehabilitation tools include cloud computing techniques and hardware required for implementation of DL algorithms. The important challenges in accurate detection of automated epileptic seizures using DL with EEG and MRI modalities are discussed. The advantages and limitations in employing DL-based techniques for epileptic seizures diagnosis are presented. Finally, the most promising DL models proposed and possible future works on automated epileptic seizure detection are delineated.
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Affiliation(s)
- Afshin Shoeibi
- Faculty of Electrical Engineering, Biomedical Data Acquisition Lab (BDAL), K. N. Toosi University of Technology, Tehran 1631714191, Iran;
- Computer Engineering Department, Ferdowsi University of Mashhad, Mashhad 9177948974, Iran; (D.A.); (M.R.)
| | | | - Navid Ghassemi
- Faculty of Electrical Engineering, Biomedical Data Acquisition Lab (BDAL), K. N. Toosi University of Technology, Tehran 1631714191, Iran;
- Computer Engineering Department, Ferdowsi University of Mashhad, Mashhad 9177948974, Iran; (D.A.); (M.R.)
| | - Mahboobeh Jafari
- Electrical and Computer Engineering Faculty, Semnan University, Semnan 3513119111, Iran;
| | - Parisa Moridian
- Faculty of Engineering, Science and Research Branch, Islamic Azad University, Tehran 1477893855, Iran;
| | - Roohallah Alizadehsani
- Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Waurn Ponds, VIC 3217, Australia; (R.A.); (F.K.); (A.K.); (S.N.)
| | - Maryam Panahiazar
- Institute for Computational Health Sciences, School of Medicine, University of California, San Francisco, CA 94143, USA;
| | - Fahime Khozeimeh
- Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Waurn Ponds, VIC 3217, Australia; (R.A.); (F.K.); (A.K.); (S.N.)
| | - Assef Zare
- Faculty of Electrical Engineering, Gonabad Branch, Islamic Azad University, Gonabad 6518115743, Iran;
| | - Hossein Hosseini-Nejad
- Faculty of Electrical and Computer Engineering, K. N. Toosi University of Technology, Tehran 1631714191, Iran;
| | - Abbas Khosravi
- Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Waurn Ponds, VIC 3217, Australia; (R.A.); (F.K.); (A.K.); (S.N.)
| | - Amir F. Atiya
- Department of Computer Engineering, Faculty of Engineering, Cairo University, Cairo 12613, Egypt;
| | - Diba Aminshahidi
- Computer Engineering Department, Ferdowsi University of Mashhad, Mashhad 9177948974, Iran; (D.A.); (M.R.)
| | - Sadiq Hussain
- System Administrator at Dibrugarh University, Assam 786004, India;
| | - Modjtaba Rouhani
- Computer Engineering Department, Ferdowsi University of Mashhad, Mashhad 9177948974, Iran; (D.A.); (M.R.)
| | - Saeid Nahavandi
- Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Waurn Ponds, VIC 3217, Australia; (R.A.); (F.K.); (A.K.); (S.N.)
| | - Udyavara Rajendra Acharya
- Department of Biomedical Engineering, School of Science and Technology, Singapore University of Social Sciences, Singapore 599494, Singapore;
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore 599489, Singapore
- Department of Bioinformatics and Medical Engineering, Taichung City 41354, Taiwan
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34
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Saminu S, Xu G, Shuai Z, Abd El Kader I, Jabire AH, Ahmed YK, Karaye IA, Ahmad IS. A Recent Investigation on Detection and Classification of Epileptic Seizure Techniques Using EEG Signal. Brain Sci 2021; 11:668. [PMID: 34065473 PMCID: PMC8160878 DOI: 10.3390/brainsci11050668] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Revised: 05/14/2021] [Accepted: 05/16/2021] [Indexed: 02/07/2023] Open
Abstract
The benefits of early detection and classification of epileptic seizures in analysis, monitoring and diagnosis for the realization and actualization of computer-aided devices and recent internet of medical things (IoMT) devices can never be overemphasized. The success of these applications largely depends on the accuracy of the detection and classification techniques employed. Several methods have been investigated, proposed and developed over the years. This paper investigates various seizure detection algorithms and classifications in the last decade, including conventional techniques and recent deep learning algorithms. It also discusses epileptiform detection as one of the steps towards advanced diagnoses of disorders of consciousness (DOCs) and their understanding. A performance comparison was carried out on the different algorithms investigated, and their advantages and disadvantages were explored. From our survey, much attention has recently been paid to exploring the efficacy of deep learning algorithms in seizure detection and classification, which are employed in other areas such as image processing and classification. Hybrid deep learning has also been explored, with CNN-RNN being the most popular.
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Affiliation(s)
- Sani Saminu
- State Key Laboratory of Reliability and Intelligence of Electrical Equipment, Hebei University of Technology, Tianjin 300130, China; (Z.S.); (I.A.E.K.); (I.A.K.); (I.S.A.)
- Biomedical Engineering Department, University of Ilorin, P.M.B 1515, Ilorin 240003, Nigeria;
| | - Guizhi Xu
- State Key Laboratory of Reliability and Intelligence of Electrical Equipment, Hebei University of Technology, Tianjin 300130, China; (Z.S.); (I.A.E.K.); (I.A.K.); (I.S.A.)
| | - Zhang Shuai
- State Key Laboratory of Reliability and Intelligence of Electrical Equipment, Hebei University of Technology, Tianjin 300130, China; (Z.S.); (I.A.E.K.); (I.A.K.); (I.S.A.)
| | - Isselmou Abd El Kader
- State Key Laboratory of Reliability and Intelligence of Electrical Equipment, Hebei University of Technology, Tianjin 300130, China; (Z.S.); (I.A.E.K.); (I.A.K.); (I.S.A.)
| | - Adamu Halilu Jabire
- Department of Electrical and Electronics Engineering, Taraba State University, Jalingo 660242, Nigeria;
| | - Yusuf Kola Ahmed
- Biomedical Engineering Department, University of Ilorin, P.M.B 1515, Ilorin 240003, Nigeria;
| | - Ibrahim Abdullahi Karaye
- State Key Laboratory of Reliability and Intelligence of Electrical Equipment, Hebei University of Technology, Tianjin 300130, China; (Z.S.); (I.A.E.K.); (I.A.K.); (I.S.A.)
| | - Isah Salim Ahmad
- State Key Laboratory of Reliability and Intelligence of Electrical Equipment, Hebei University of Technology, Tianjin 300130, China; (Z.S.); (I.A.E.K.); (I.A.K.); (I.S.A.)
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35
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Fürbass F, Koren J, Hartmann M, Brandmayr G, Hafner S, Baumgartner C. Activation patterns of interictal epileptiform discharges in relation to sleep and seizures: An artificial intelligence driven data analysis. Clin Neurophysiol 2021; 132:1584-1592. [PMID: 34030056 DOI: 10.1016/j.clinph.2021.03.052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 03/11/2021] [Accepted: 03/26/2021] [Indexed: 10/21/2022]
Abstract
OBJECTIVE To quantify effects of sleep and seizures on the rate of interictal epileptiform discharges (IED) and to classify patients with epilepsy based on IED activation patterns. METHODS We analyzed long-term EEGs from 76 patients with at least one recorded epileptic seizure during monitoring. IEDs were detected with an AI-based algorithm and validated by visual inspection. We then used unsupervised clustering to characterize patient sub-cohorts with similar IED activation patterns regarding circadian rhythms, deep sleep activation, and seizure occurrence. RESULTS Five sub-cohorts with similar IED activation patterns were found: "Sporadic" (14%, n = 10) without or few IEDs, "Continuous" (32%, n = 23) with weak circadian/deep sleep or seizure modulation, "Nighttime & seizure activation" (23%, n = 17) with high IED rates during normal sleep times and after seizures but without deep sleep modulation, "Deep sleep" (19%, n = 14) with strong IED modulation during deep sleep, and "Seizure deactivation" (12%, n = 9) with deactivation of IEDs after seizures. Patients showing "Deep sleep" IED pattern were diagnosed with temporal lobe epilepsy in 86%, while 80% of the "Sporadic" cluster were extratemporal. CONCLUSIONS Patients with epilepsy can be characterized by using temporal relationships between rates of IEDs, circadian rhythms, deep sleep and seizures. SIGNIFICANCE This work presents the first approach to data-driven classification of epilepsy patients based on their fully validated temporal pattern of IEDs.
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Affiliation(s)
- Franz Fürbass
- Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Vienna, Austria.
| | - Johannes Koren
- Department of Neurology, Clinic Hietzing, Vienna, Austria; Karl Landsteiner Institute for Clinical Epilepsy Research and Cognitive Neurology, Vienna, Austria
| | - Manfred Hartmann
- Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Vienna, Austria
| | - Georg Brandmayr
- Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Vienna, Austria; Institute of Artificial Intelligence & Decision Support, Medical University Vienna, Vienna, Austria
| | | | - Christoph Baumgartner
- Department of Neurology, Clinic Hietzing, Vienna, Austria; Karl Landsteiner Institute for Clinical Epilepsy Research and Cognitive Neurology, Vienna, Austria; Medical Faculty, Sigmund Freud University, Vienna, Austria
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36
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da Silva Lourenço C, Tjepkema-Cloostermans MC, van Putten MJAM. Machine learning for detection of interictal epileptiform discharges. Clin Neurophysiol 2021; 132:1433-1443. [PMID: 34023625 DOI: 10.1016/j.clinph.2021.02.403] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Revised: 01/28/2021] [Accepted: 02/12/2021] [Indexed: 11/30/2022]
Abstract
The electroencephalogram (EEG) is a fundamental tool in the diagnosis and classification of epilepsy. In particular, Interictal Epileptiform Discharges (IEDs) reflect an increased likelihood of seizures and are routinely assessed by visual analysis of the EEG. Visual assessment is, however, time consuming and prone to subjectivity, leading to a high misdiagnosis rate and motivating the development of automated approaches. Research towards automating IED detection started 45 years ago. Approaches range from mimetic methods to deep learning techniques. We review different approaches to IED detection, discussing their performance and limitations. Traditional machine learning and deep learning methods have yielded the best results so far and their application in the field is still growing. Standardization of datasets and outcome measures is necessary to compare models more objectively and decide which should be implemented in a clinical setting.
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Affiliation(s)
- Catarina da Silva Lourenço
- Department of Clinical Neurophysiology, Institute for Technical Medicine, University of Twente, Technical Medical Centre, Enschede, the Netherlands.
| | - Marleen C Tjepkema-Cloostermans
- Department of Clinical Neurophysiology, Institute for Technical Medicine, University of Twente, Technical Medical Centre, Enschede, the Netherlands; Neurocentrum, Medisch Spectrum Twente MST, Enschede, the Netherlands.
| | - Michel J A M van Putten
- Department of Clinical Neurophysiology, Institute for Technical Medicine, University of Twente, Technical Medical Centre, Enschede, the Netherlands; Neurocentrum, Medisch Spectrum Twente MST, Enschede, the Netherlands.
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da Silva Lourenço C, Tjepkema-Cloostermans MC, van Putten MJAM. Efficient use of clinical EEG data for deep learning in epilepsy. Clin Neurophysiol 2021; 132:1234-1240. [PMID: 33867258 DOI: 10.1016/j.clinph.2021.01.035] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Revised: 12/22/2020] [Accepted: 01/22/2021] [Indexed: 10/21/2022]
Abstract
OBJECTIVE Automating detection of Interictal Epileptiform Discharges (IEDs) in electroencephalogram (EEG) recordings can reduce the time spent on visual analysis for the diagnosis of epilepsy. Deep learning has shown potential for this purpose, but the scarceness of expert annotated data creates a bottleneck in the process. METHODS We used EEGs from 50 patients with focal epilepsy, 49 patients with generalized epilepsy (IEDs were visually labeled by experts) and 67 controls. The data was filtered, downsampled and cut into two second epochs. We increased the number of input samples containing IEDs through temporal shifting and using different montages. A VGG C convolutional neural network was trained to detect IEDs. RESULTS Using the dataset with more samples, we reduced the false positive rate from 2.11 to 0.73 detections per minute at the intersection of sensitivity and specificity. Sensitivity increased from 63% to 96% at 99% specificity. The model became less sensitive to the position of the IED in the epoch and montage. CONCLUSIONS Temporal shifting and use of different EEG montages improves performance of deep neural networks in IED detection. SIGNIFICANCE Dataset augmentation can reduce the need for expert annotation, facilitating the training of neural networks, potentially leading to a fundamental shift in EEG analysis.
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Affiliation(s)
- Catarina da Silva Lourenço
- Department of Clinical Neurophysiology, Institute for Technical Medicine, University of Twente, Technical Medical Centre, Enschede, the Netherlands.
| | - Marleen C Tjepkema-Cloostermans
- Department of Clinical Neurophysiology, Institute for Technical Medicine, University of Twente, Technical Medical Centre, Enschede, the Netherlands; Neurocentrum, Medisch Spectrum Twente, Enschede, the Netherlands.
| | - Michel J A M van Putten
- Department of Clinical Neurophysiology, Institute for Technical Medicine, University of Twente, Technical Medical Centre, Enschede, the Netherlands; Neurocentrum, Medisch Spectrum Twente, Enschede, the Netherlands.
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Ranti D, Valliani AAA, Costa A, Oermann EK. Artificial intelligence as applied to clinical neurological conditions. Artif Intell Med 2021. [DOI: 10.1016/b978-0-12-821259-2.00020-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Li Q, Gao J, Huang Q, Wu Y, Xu B. Distinguishing Epileptiform Discharges From Normal Electroencephalograms Using Scale-Dependent Lyapunov Exponent. Front Bioeng Biotechnol 2020; 8:1006. [PMID: 33015003 PMCID: PMC7506120 DOI: 10.3389/fbioe.2020.01006] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Accepted: 07/31/2020] [Indexed: 11/23/2022] Open
Abstract
Epileptiform discharges are of fundamental importance in understanding the physiology of epilepsy. To aid in the clinical diagnosis, classification, prognosis, and treatment of epilepsy, it is important to develop automated computer programs to distinguish epileptiform discharges from normal electroencephalogram (EEG). This is a challenging task as clinically used scalp EEG often contains a lot of noise and motion artifacts. The challenge is even greater if one wishes to develop explainable rather than black-box based approaches. To take on this challenge, we propose to use a multiscale complexity measure, the scale-dependent Lyapunov exponent (SDLE). We analyzed 640 multi-channel EEG segments, each 4 s long. Among these segments, 540 are short epileptiform discharges, and 100 are from healthy controls. We found that features from SDLE were very effective in distinguishing epileptiform discharges from normal EEG. Using Random Forest Classifier (RF) and Support Vector Machines (SVM), the proposed approach with different features from SDLE robustly achieves an accuracy exceeding 99% in distinguishing epileptiform discharges from normal control ones. A single parameter, which is the ratio of the spectral energy of EEG signals and the SDLE and quantifies the regularity or predictability of the EEG signals, is introduced to better understand the high accuracy in the classification. It is found that this regularity is considerably greater for epileptiform discharges than for normal controls. Robustly having high accuracy in distinguishing epileptiform discharges from normal controls irrespective of which classification scheme being used, the proposed approach has the potential to be used widely in a clinical setting.
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Affiliation(s)
- Qiong Li
- School of Computer, Electronics and Information, Guangxi University, Nanning, China
| | - Jianbo Gao
- Center for Geodata and Analysis, Faculty of Geographical Science, Beijing Normal University, Beijing, China.,Institute of Automation, Chinese Academy of Sciences, Beijing, China.,International College, Guangxi University, Nanning, China
| | - Qi Huang
- The First Affiliated Hospital of Guangxi Medical University, Nanning, China
| | - Yuan Wu
- The First Affiliated Hospital of Guangxi Medical University, Nanning, China
| | - Bo Xu
- Institute of Automation, Chinese Academy of Sciences, Beijing, China
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Baumgartner C, Hafner S, Koren JP. Automatische Erkennung von epilepsietypischen Potenzialen und
Anfällen im EEG. KLIN NEUROPHYSIOL 2020. [DOI: 10.1055/a-1169-4254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
Die Elektroenzephalografie (EEG) ist der wichtigste apparative Eckpfeiler in
der Diagnostik und Therapieführung bei Epilepsien. Die visuelle
EEG-Befundung stellt dabei nach wie vor den Goldstandard dar. Automatische
computerunterstützte Methoden zur Detektion und Quantifizierung von
interiktalen epilepsietypischen Potenzialen und Anfällen
unterstützen eine zeitsparende, objektive, rasch und jederzeit
verfügbare quantitative EEG-Befundung.
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Thomas J, Jin J, Thangavel P, Bagheri E, Yuvaraj R, Dauwels J, Rathakrishnan R, Halford JJ, Cash SS, Westover B. Automated Detection of Interictal Epileptiform Discharges from Scalp Electroencephalograms by Convolutional Neural Networks. Int J Neural Syst 2020; 30:2050030. [PMID: 32812468 DOI: 10.1142/s0129065720500306] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Visual evaluation of electroencephalogram (EEG) for Interictal Epileptiform Discharges (IEDs) as distinctive biomarkers of epilepsy has various limitations, including time-consuming reviews, steep learning curves, interobserver variability, and the need for specialized experts. The development of an automated IED detector is necessary to provide a faster and reliable diagnosis of epilepsy. In this paper, we propose an automated IED detector based on Convolutional Neural Networks (CNNs). We have evaluated the proposed IED detector on a sizable database of 554 scalp EEG recordings (84 epileptic patients and 461 nonepileptic subjects) recorded at Massachusetts General Hospital (MGH), Boston. The proposed CNN IED detector has achieved superior performance in comparison with conventional methods with a mean cross-validation area under the precision-recall curve (AUPRC) of 0.838[Formula: see text]±[Formula: see text]0.040 and false detection rate of 0.2[Formula: see text]±[Formula: see text]0.11 per minute for a sensitivity of 80%. We demonstrated the proposed system to be noninferior to 30 neurologists on a dataset from the Medical University of South Carolina (MUSC). Further, we clinically validated the system at National University Hospital (NUH), Singapore, with an agreement accuracy of 81.41% with a clinical expert. Moreover, the proposed system can be applied to EEG recordings with any arbitrary number of channels.
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Affiliation(s)
- John Thomas
- School of Electrical and Electronic Engineering, Nanyang Technological University, Singapore 639798, Singapore
| | - Jing Jin
- School of Electrical and Electronic Engineering, Nanyang Technological University, Singapore 639798, Singapore
| | - Prasanth Thangavel
- School of Electrical and Electronic Engineering, Nanyang Technological University, Singapore 639798, Singapore
| | - Elham Bagheri
- School of Electrical and Electronic Engineering, Nanyang Technological University, Singapore 639798, Singapore
| | - Rajamanickam Yuvaraj
- School of Electrical and Electronic Engineering, Nanyang Technological University, Singapore 639798, Singapore
| | - Justin Dauwels
- School of Electrical and Electronic Engineering, Nanyang Technological University, Singapore 639798, Singapore
| | - Rahul Rathakrishnan
- Division of Neurology, National University Hospital, Singapore 119074, Singapore
| | - Jonathan J Halford
- Department of Neurology, Medical University of South Carolina, Charleston, SC 29425, USA
| | - Sydney S Cash
- Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, USA.,Harvard Medical School, Boston, MA 02115, USA
| | - Brandon Westover
- Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, USA.,Harvard Medical School, Boston, MA 02115, USA
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Li Q, Gao J, Zhang Z, Huang Q, Wu Y, Xu B. Distinguishing Epileptiform Discharges From Normal Electroencephalograms Using Adaptive Fractal and Network Analysis: A Clinical Perspective. Front Physiol 2020; 11:828. [PMID: 32903770 PMCID: PMC7438848 DOI: 10.3389/fphys.2020.00828] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Accepted: 06/22/2020] [Indexed: 01/03/2023] Open
Abstract
Epilepsy is one of the most common disorders of the brain. Clinically, to corroborate an epileptic seizure-like symptom and to find the seizure localization, electroencephalogram (EEG) data are often visually examined by a clinical doctor to detect the presence of epileptiform discharges. Epileptiform discharges are transient waveforms lasting for several tens to hundreds of milliseconds and are mainly divided into seven types. It is important to develop systematic approaches to accurately distinguish these waveforms from normal control ones. This is a difficult task if one wishes to develop first principle rather than black-box based approaches, since clinically used scalp EEGs usually contain a lot of noise and artifacts. To solve this problem, we analyzed 640 multi-channel EEG segments, each 4s long. Among these segments, 540 are short epileptiform discharges, and 100 are from healthy controls. We have proposed two approaches for distinguishing epileptiform discharges from normal EEGs. The first method is based on Signal Range and EEGs' long range correlation properties characterized by the Hurst parameter H extracted by applying adaptive fractal analysis (AFA), which can also maximally suppress the effects of noise and various kinds of artifacts. Our second method is based on networks constructed from three aspects of the scalp EEG signals, the Signal Range, the energy of the alpha wave component, and EEG's long range correlation properties. The networks are further analyzed using singular value decomposition (SVD). The square of the first singular value from SVD is used to construct features to distinguish epileptiform discharges from normal controls. Using Random Forest Classifier (RF), our approaches can achieve very high accuracy in distinguishing epileptiform discharges from normal control ones, and thus are very promising to be used clinically. The network-based approach is also used to infer the localizations of each type of epileptiform discharges, and it is found that the sub-networks representing the most likely location of each type of epileptiform discharges are different among the seven types of epileptiform discharges.
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Affiliation(s)
- Qiong Li
- School of Computer, Electronics and Information, Guangxi University, Nanning, China
| | - Jianbo Gao
- Center for Geodata and Analysis, Faculty of Geographical Science, Beijing Normal University, Beijing, China
- Institute of Automation, Chinese Academy of Sciences, Beijing, China
- International College, Guangxi University, Nanning, Guangxi, China
| | - Ziwen Zhang
- School of Computer, Electronics and Information, Guangxi University, Nanning, China
| | - Qi Huang
- The First Affiliated Hospital of Guangxi Medical University, Nanning, China
| | - Yuan Wu
- The First Affiliated Hospital of Guangxi Medical University, Nanning, China
| | - Bo Xu
- Institute of Automation, Chinese Academy of Sciences, Beijing, China
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Zheng WL, Sun H, Akeju O, Westover MB. Adaptive Sedation Monitoring From EEG in ICU Patients With Online Learning. IEEE Trans Biomed Eng 2020; 67:1696-1706. [PMID: 31545708 PMCID: PMC7085963 DOI: 10.1109/tbme.2019.2943062] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Sedative medications are routinely administered to provide comfort and facilitate clinical care in critically ill ICU patients. Prior work shows that brain monitoring using electroencephalography (EEG) to track sedation levels may help medical personnel to optimize drug dosing and avoid the adverse effects of oversedation and undersedation. However, the performance of sedation monitoring methods proposed to date deal poorly with individual variability across patients, leading to inconsistent performance. To address this challenge we develop an online learning approach based on Adaptive Regularization of Weight Vectors (AROW). Our approach adaptively updates a sedation level prediction algorithm under a continuously evolving data distribution. The prediction model is gradually calibrated for individual patients in response to EEG observations and routine clinical assessments over time. The evaluations are performed on a population of 172 sedated ICU patients whose sedation levels were assessed using the Richmond Agitation-Sedation Scale (scores between -5 = comatose and 0 = awake). The proposed adaptive model achieves better performance than the same model without adaptation (average accuracies with tolerance of one level difference: 68.76% vs. 61.10%). Moreover, our approach is shown to be robust to sudden changes caused by label noise. Medication administrations have different effects on model performance. We find that the model performs best in patients receiving only propofol, compared to patients receiving no sedation or multiple simultaneous sedative medications.
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Abbasi H, Bennet L, Gunn AJ, Unsworth CP. 2D Wavelet Scalogram Training of Deep Convolutional Neural Network for Automatic Identification of Micro-Scale Sharp Wave Biomarkers in the Hypoxic-Ischemic EEG of Preterm Sheep. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2019:1825-1828. [PMID: 31946252 DOI: 10.1109/embc.2019.8857665] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
We have recently demonstrated that micro-scale Sharp waves in the first few hours EEG of asphyxiated preterm fetal sheep models are the reliable prognostic biomarkers for Hypoxic-Ischemic Encephalopathy (HIE). Higher number of sharp waves within the first 2 hours from a hypoxic insult is shown to be significantly correlated to subcortical neuronal survival in caudate nucleus of striatum. Cerebral therapeutic hypothermia is also shown to be optimally neuroprotective only if initiated as soon as possible during a short window of opportunity within the first 2-3 hours of HI insult, called the latent phase. Therefore there is an urgent necessity for reliable automated algorithms to robustly identify such biomarkers to help early diagnosis of HIE, in real time at birth, before the optimal window of opportunity for treatment is missed.We have previously introduced successful automated signal processing strategies based on the fusion of wavelet and fuzzy techniques, for real-time identification and quantification of sharp waves along a profoundly suppressed EEG/ECoG background, post HI-insult, during the latent phase of sheep models. This work, in particular, for the first time represents a novel online fusion strategy based on the combination of a deep Convolutional Neural Network (CNN) in conjunction with Wavelet Scalogram (WS) for the real-time identification and classification of micro-scale sharp wave biomarkers within the 1024Hz high resolution ECoG recordings as well as the down-sampled 256Hz signals, from in utero preterm fetal sheep. The WS-CNN classifier highlights ability in the identification of HI sharp waves with remarkable high accuracies of 95.34% for 1024Hz and 94.62% for 256Hz data tested over one hour HI ECoG within the most important interval during the first 2 hours of the latent phase, where experiments have suggested hypothermia is optimally effective.
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Fürbass F, Kural MA, Gritsch G, Hartmann M, Kluge T, Beniczky S. An artificial intelligence-based EEG algorithm for detection of epileptiform EEG discharges: Validation against the diagnostic gold standard. Clin Neurophysiol 2020; 131:1174-1179. [PMID: 32299000 DOI: 10.1016/j.clinph.2020.02.032] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2019] [Revised: 02/14/2020] [Accepted: 02/29/2020] [Indexed: 12/22/2022]
Abstract
OBJECTIVE To validate an artificial intelligence-based computer algorithm for detection of epileptiform EEG discharges (EDs) and subsequent identification of patients with epilepsy. METHODS We developed an algorithm for automatic detection of EDs, based on a novel deep learning method that requires a low amount of labeled EEG data for training. Detected EDs are automatically grouped into clusters, consisting of the same type of EDs, for rapid visual inspection. We validated the algorithm on an independent dataset of 100 patients with sharp transients in their EEG recordings (54 with epilepsy and 46 with non-epileptic paroxysmal events). The diagnostic gold standard was derived from the video-EEG recordings of the patients' habitual events. RESULTS The algorithm had a sensitivity of 89% for identifying EEGs with EDs recorded from patients with epilepsy, a specificity of 70%, and an overall accuracy of 80%. CONCLUSIONS Automated detection of EDs using an artificial intelligence-based computer algorithm had a high sensitivity. Human (expert) supervision is still necessary for confirming the clusters of detected EDs and for describing clinical correlations. Further studies on different patient populations will be needed to confirm our results. SIGNIFICANCE The automated algorithm we describe here is a useful tool, assisting neurophysiologist in rapid assessment of EEG recordings.
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Affiliation(s)
- Franz Fürbass
- Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Vienna, Austria
| | - Mustafa Aykut Kural
- Department of Clinical Neurophysiology, Aarhus University Hospital and Department of Clinical Medicine, Aarhus University, Aarhus, Denmark
| | - Gerhard Gritsch
- Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Vienna, Austria
| | - Manfred Hartmann
- Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Vienna, Austria
| | - Tilmann Kluge
- Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Vienna, Austria
| | - Sándor Beniczky
- Department of Clinical Neurophysiology, Aarhus University Hospital and Department of Clinical Medicine, Aarhus University, Aarhus, Denmark; Department of Clinical Neurophysiology, Danish Epilepsy Centre, Dianalund, Denmark.
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Rim B, Sung NJ, Min S, Hong M. Deep Learning in Physiological Signal Data: A Survey. SENSORS (BASEL, SWITZERLAND) 2020; 20:E969. [PMID: 32054042 PMCID: PMC7071412 DOI: 10.3390/s20040969] [Citation(s) in RCA: 73] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/07/2020] [Revised: 01/31/2020] [Accepted: 02/09/2020] [Indexed: 12/11/2022]
Abstract
Deep Learning (DL), a successful promising approach for discriminative and generative tasks, has recently proved its high potential in 2D medical imaging analysis; however, physiological data in the form of 1D signals have yet to be beneficially exploited from this novel approach to fulfil the desired medical tasks. Therefore, in this paper we survey the latest scientific research on deep learning in physiological signal data such as electromyogram (EMG), electrocardiogram (ECG), electroencephalogram (EEG), and electrooculogram (EOG). We found 147 papers published between January 2018 and October 2019 inclusive from various journals and publishers. The objective of this paper is to conduct a detailed study to comprehend, categorize, and compare the key parameters of the deep-learning approaches that have been used in physiological signal analysis for various medical applications. The key parameters of deep-learning approach that we review are the input data type, deep-learning task, deep-learning model, training architecture, and dataset sources. Those are the main key parameters that affect system performance. We taxonomize the research works using deep-learning method in physiological signal analysis based on: (1) physiological signal data perspective, such as data modality and medical application; and (2) deep-learning concept perspective such as training architecture and dataset sources.
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Affiliation(s)
- Beanbonyka Rim
- Department of Computer Science, Soonchunhyang University, Asan 31538, Korea
| | - Nak-Jun Sung
- Department of Computer Science, Soonchunhyang University, Asan 31538, Korea
| | - Sedong Min
- Department of Medical IT Engineering, Soonchunhyang University, Asan 31538, Korea
| | - Min Hong
- Department of Computer Software Engineering, Soonchunhyang University, Asan 31538, Korea
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Deep Learning for Interictal Epileptiform Discharge Detection from Scalp EEG Recordings. IFMBE PROCEEDINGS 2020. [DOI: 10.1007/978-3-030-31635-8_237] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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Abou Jaoude M, Jing J, Sun H, Jacobs CS, Pellerin KR, Westover MB, Cash SS, Lam AD. Detection of mesial temporal lobe epileptiform discharges on intracranial electrodes using deep learning. Clin Neurophysiol 2020; 131:133-141. [PMID: 31760212 PMCID: PMC6879011 DOI: 10.1016/j.clinph.2019.09.031] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2019] [Revised: 08/10/2019] [Accepted: 09/16/2019] [Indexed: 01/11/2023]
Abstract
OBJECTIVE Develop a high-performing algorithm to detect mesial temporal lobe (mTL) epileptiform discharges on intracranial electrode recordings. METHODS An epileptologist annotated 13,959 epileptiform discharges from a dataset of intracranial EEG recordings from 46 epilepsy patients. Using this dataset, we trained a convolutional neural network (CNN) to recognize mTL epileptiform discharges from a single intracranial bipolar channel. The CNN outputs from multiple bipolar channel inputs were averaged to generate the final detector output. Algorithm performance was estimated using a nested 5-fold cross-validation. RESULTS On the receiver-operating characteristic curve, our algorithm achieved an area under the curve (AUC) of 0.996 and a partial AUC (for specificity > 0.9) of 0.981. AUC on a precision-recall curve was 0.807. A sensitivity of 84% was attained at a false positive rate of 1 per minute. 35.9% of the false positive detections corresponded to epileptiform discharges that were missed during expert annotation. CONCLUSIONS Using deep learning, we developed a high-performing, patient non-specific algorithm for detection of mTL epileptiform discharges on intracranial electrodes. SIGNIFICANCE Our algorithm has many potential applications for understanding the impact of mTL epileptiform discharges in epilepsy and on cognition, and for developing therapies to specifically reduce mTL epileptiform activity.
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Affiliation(s)
- Maurice Abou Jaoude
- Epilepsy Division, Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA
| | - Jin Jing
- Epilepsy Division, Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA
| | - Haoqi Sun
- Epilepsy Division, Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA
| | - Claire S Jacobs
- Epilepsy Division, Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA
| | - Kyle R Pellerin
- Epilepsy Division, Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA
| | - M Brandon Westover
- Epilepsy Division, Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA
| | - Sydney S Cash
- Epilepsy Division, Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA
| | - Alice D Lam
- Epilepsy Division, Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.
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Normalization of EEG in depression after antidepressant treatment with sertraline? A preliminary report. J Affect Disord 2019; 259:67-72. [PMID: 31437703 DOI: 10.1016/j.jad.2019.08.016] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/15/2019] [Revised: 08/08/2019] [Accepted: 08/12/2019] [Indexed: 12/20/2022]
Abstract
BACKGROUND MDD patients with abnormal EEG patterns seem more likely to be non-responsive to the antidepressants escitalopram and venlafaxine, but not sertraline, than patients without EEG abnormalities. This finding suggests that patients with both MDD and abnormal EEGs may differentially respond to antidepressant treatment. In the current study, we investigated whether depressed patients with an abnormal EEG show a normalization of the EEG related to antidepressant treatment and response and whether such effect is drug specific, and whether having had early life stress (ELS) increases the chance of abnormal activity. METHODS Baseline and week 8 EEGs and depression symptoms were extracted from a large multicenter study (iSPOT-D, n = 1008) where depressed patients were randomized to escitalopram, sertraline, or venlafaxine-XR treatment. We calculated Odds Ratios of EEG normalization and depression response in patients with an abnormal EEG at baseline, comparing sertraline versus other antidepressants. RESULTS Fifty seven patients with abnormal EEGs were included. EEGs did not normalize significantly more with sertraline compared to other antidepressants (OR = 1.9, p = .280). However, patients with a normalized EEG taking sertraline were 5.2 times more likely to respond than subjects taking other antidepressants (p = .019). ELS was not significantly related to abnormal activity. LIMITATIONS Neurophysiological recordings were limited in time (two times 2-minute EEGs) and statistical power (n = 57 abnormal EEGs). CONCLUSIONS Response rates in patients with normalized EEG taking sertraline were significantly larger than in subjects treated with escitalopram/venlafaxine. This adds to personalized medicine and suggests a possible drug repurposing for sertraline.
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