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Rahman S, Pal S, Yearwood J, Karmakar C. Robustness of Deep Learning models in electrocardiogram noise detection and classification. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2024; 253:108249. [PMID: 38815528 DOI: 10.1016/j.cmpb.2024.108249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2024] [Revised: 05/20/2024] [Accepted: 05/22/2024] [Indexed: 06/01/2024]
Abstract
BACKGROUND AND OBJECTIVE Automatic electrocardiogram (ECG) signal analysis for heart disease detection has gained significant attention due to busy lifestyles. However, ECG signals are susceptible to noise, which adversely affects the performance of ECG signal analysers. Traditional blind filtering methods use predefined noise frequency and filter order, but they alter ECG biomarkers. Several Deep Learning-based ECG noise detection and classification methods exist, but no study compares recurrent neural network (RNN) and convolutional neural network (CNN) architectures and their complexity. METHODS This paper introduces a knowledge-based ECG filtering system using Deep Learning to classify ECG noise types and compare popular computer vision model architectures in a practical Internet of Medical Things (IoMT) framework. Experimental results demonstrate that the CNN-based ECG noise classifier outperforms the RNN-based model in terms of performance and training time. RESULTS The study shows that AlexNet, visual geometry group (VGG), and residual network (ResNet) achieved over 70% accuracy, specificity, sensitivity, and F1 score across six datasets. VGG and ResNet performances were comparable, but VGG was more complex than ResNet, with only a 4.57% less F1 score. CONCLUSIONS This paper introduces a Deep Learning (DL) based ECG noise classifier for a knowledge-driven ECG filtering system, offering selective filtering to reduce signal distortion. Evaluation of various CNN and RNN-based models reveals VGG and Resnet outperform. Further, the VGG model is superior in terms of performance. But Resnet performs comparably to VGG with less model complexity.
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Affiliation(s)
- Saifur Rahman
- School of Information Technology, Deakin University, Melbourne, Victoria, Australia.
| | - Shantanu Pal
- School of Information Technology, Deakin University, Melbourne, Victoria, Australia.
| | - John Yearwood
- School of Information Technology, Deakin University, Melbourne, Victoria, Australia.
| | - Chandan Karmakar
- School of Information Technology, Deakin University, Melbourne, Victoria, Australia.
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2
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Hao T, Zhang M, Song Z, Gou Y, Wang B, Sun J. Reconstruction of Eriocheir sinensis Protein-Protein Interaction Network Based on DGO-SVM Method. Curr Issues Mol Biol 2024; 46:7353-7372. [PMID: 39057077 PMCID: PMC11276262 DOI: 10.3390/cimb46070436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2024] [Revised: 06/25/2024] [Accepted: 07/10/2024] [Indexed: 07/28/2024] Open
Abstract
Eriocheir sinensis is an economically important aquatic animal. Its regulatory mechanisms underlying many biological processes are still vague due to the lack of systematic analysis tools. The protein-protein interaction network (PIN) is an important tool for the systematic analysis of regulatory mechanisms. In this work, a novel machine learning method, DGO-SVM, was applied to predict the protein-protein interaction (PPI) in E. sinensis, and its PIN was reconstructed. With the domain, biological process, molecular functions and subcellular locations of proteins as the features, DGO-SVM showed excellent performance in Bombyx mori, humans and five aquatic crustaceans, with 92-96% accuracy. With DGO-SVM, the PIN of E. sinensis was reconstructed, containing 14,703 proteins and 7,243,597 interactions, in which 35,604 interactions were associated with 566 novel proteins mainly involved in the response to exogenous stimuli, cellular macromolecular metabolism and regulation. The DGO-SVM demonstrated that the biological process, molecular functions and subcellular locations of proteins are significant factors for the precise prediction of PPIs. We reconstructed the largest PIN for E. sinensis, which provides a systematic tool for the regulatory mechanism analysis. Furthermore, the novel-protein-related PPIs in the PIN may provide important clues for the mechanism analysis of the underlying specific physiological processes in E. sinensis.
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Affiliation(s)
| | | | | | | | - Bin Wang
- Tianjin Key Laboratory of Animal and Plant Resistance, College of Life Sciences, Tianjin Normal University, Tianjin 300387, China; (T.H.); (M.Z.); (Z.S.); (Y.G.)
| | - Jinsheng Sun
- Tianjin Key Laboratory of Animal and Plant Resistance, College of Life Sciences, Tianjin Normal University, Tianjin 300387, China; (T.H.); (M.Z.); (Z.S.); (Y.G.)
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3
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Siontis KC, Wieczorek MA, Maanja M, Hodge DO, Kim HK, Lee HJ, Lee H, Lim J, Park CS, Ariga R, Raman B, Mahmod M, Watkins H, Neubauer S, Windecker S, Siontis GCM, Gersh BJ, Ackerman MJ, Attia ZI, Friedman PA, Noseworthy PA. Hypertrophic cardiomyopathy detection with artificial intelligence electrocardiography in international cohorts: an external validation study. EUROPEAN HEART JOURNAL. DIGITAL HEALTH 2024; 5:416-426. [PMID: 39081936 PMCID: PMC11284003 DOI: 10.1093/ehjdh/ztae029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 03/09/2024] [Accepted: 03/11/2024] [Indexed: 08/02/2024]
Abstract
Aims Recently, deep learning artificial intelligence (AI) models have been trained to detect cardiovascular conditions, including hypertrophic cardiomyopathy (HCM), from the 12-lead electrocardiogram (ECG). In this external validation study, we sought to assess the performance of an AI-ECG algorithm for detecting HCM in diverse international cohorts. Methods and results A convolutional neural network-based AI-ECG algorithm was developed previously in a single-centre North American HCM cohort (Mayo Clinic). This algorithm was applied to the raw 12-lead ECG data of patients with HCM and non-HCM controls from three external cohorts (Bern, Switzerland; Oxford, UK; and Seoul, South Korea). The algorithm's ability to distinguish HCM vs. non-HCM status from the ECG alone was examined. A total of 773 patients with HCM and 3867 non-HCM controls were included across three sites in the merged external validation cohort. The HCM study sample comprised 54.6% East Asian, 43.2% White, and 2.2% Black patients. Median AI-ECG probabilities of HCM were 85% for patients with HCM and 0.3% for controls (P < 0.001). Overall, the AI-ECG algorithm had an area under the receiver operating characteristic curve (AUC) of 0.922 [95% confidence interval (CI) 0.910-0.934], with diagnostic accuracy 86.9%, sensitivity 82.8%, and specificity 87.7% for HCM detection. In age- and sex-matched analysis (case-control ratio 1:2), the AUC was 0.921 (95% CI 0.909-0.934) with accuracy 88.5%, sensitivity 82.8%, and specificity 90.4%. Conclusion The AI-ECG algorithm determined HCM status from the 12-lead ECG with high accuracy in diverse international cohorts, providing evidence for external validity. The value of this algorithm in improving HCM detection in clinical practice and screening settings requires prospective evaluation.
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Affiliation(s)
- Konstantinos C Siontis
- Department of Cardiovascular Medicine, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA
| | - Mikolaj A Wieczorek
- Department of Quantitative Health Sciences, Mayo Clinic, 4500 San Pablo Rd S, Jacksonville, FL 32224, USA
| | - Maren Maanja
- Department of Cardiovascular Medicine, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA
- Department of Clinical Physiology, Karolinska University Hospital, Karolinska Institutet, Eugeniavägen 3, Solna, Sweden
| | - David O Hodge
- Department of Quantitative Health Sciences, Mayo Clinic, 4500 San Pablo Rd S, Jacksonville, FL 32224, USA
| | - Hyung-Kwan Kim
- Department of Internal Medicine, Seoul National University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Republic of Korea
- Division of Cardiology, Cardiovascular Center, Seoul National University Hospital, 103 Daehak-ro, Jongno-gu, Seoul, Republic of Korea
| | - Hyun-Jung Lee
- Department of Internal Medicine, Seoul National University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Republic of Korea
- Division of Cardiology, Cardiovascular Center, Seoul National University Hospital, 103 Daehak-ro, Jongno-gu, Seoul, Republic of Korea
| | - Heesun Lee
- Department of Internal Medicine, Seoul National University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Republic of Korea
- Healthcare System Gangnam Center, Seoul National University Hospital, 152 Tehran Street, Gangnam-gu, Seoul, Republic of Korea
| | - Jaehyun Lim
- Department of Internal Medicine, Seoul National University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Republic of Korea
- Division of Cardiology, Cardiovascular Center, Seoul National University Hospital, 103 Daehak-ro, Jongno-gu, Seoul, Republic of Korea
| | - Chan Soon Park
- Department of Internal Medicine, Seoul National University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Republic of Korea
- Division of Cardiology, Cardiovascular Center, Seoul National University Hospital, 103 Daehak-ro, Jongno-gu, Seoul, Republic of Korea
| | - Rina Ariga
- Division of Cardiovascular Medicine, Radcliffe Department of Medicine, University of Oxford, John Radcliffe Hospital, Headley Way, Oxford OX3 9DU, UK
| | - Betty Raman
- Division of Cardiovascular Medicine, Radcliffe Department of Medicine, University of Oxford, John Radcliffe Hospital, Headley Way, Oxford OX3 9DU, UK
| | - Masliza Mahmod
- Division of Cardiovascular Medicine, Radcliffe Department of Medicine, University of Oxford, John Radcliffe Hospital, Headley Way, Oxford OX3 9DU, UK
| | - Hugh Watkins
- Division of Cardiovascular Medicine, Radcliffe Department of Medicine, University of Oxford, John Radcliffe Hospital, Headley Way, Oxford OX3 9DU, UK
| | - Stefan Neubauer
- Division of Cardiovascular Medicine, Radcliffe Department of Medicine, University of Oxford, John Radcliffe Hospital, Headley Way, Oxford OX3 9DU, UK
| | - Stephan Windecker
- Department of Cardiology, Bern University Hospital, University of Bern, Freiburgstrasse 20, 3010 Bern, Switzerland
| | - George C M Siontis
- Department of Cardiology, Bern University Hospital, University of Bern, Freiburgstrasse 20, 3010 Bern, Switzerland
| | - Bernard J Gersh
- Department of Cardiovascular Medicine, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA
| | - Michael J Ackerman
- Department of Cardiovascular Medicine, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA
- Division of Pediatric Cardiology, Department of Pediatric and Adolescent Medicine, Windland Smith Rice Genetic Heart Rhythm Clinic, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA
- Department of Molecular Pharmacology and Experimental Therapeutics, Windland Smith Rice Sudden Death Genomics Laboratory, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA
| | - Zachi I Attia
- Department of Cardiovascular Medicine, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA
| | - Paul A Friedman
- Department of Cardiovascular Medicine, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA
| | - Peter A Noseworthy
- Department of Cardiovascular Medicine, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA
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Jha CK. Automated cardiac arrhythmia detection techniques: a comprehensive review for prospective approach. Comput Methods Biomech Biomed Engin 2024:1-16. [PMID: 38566498 DOI: 10.1080/10255842.2024.2332942] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Accepted: 03/13/2024] [Indexed: 04/04/2024]
Abstract
Abnormal cardiac functionality produces irregular heart rhythms which are commonly known as arrhythmias. In some conditions, arrhythmias are treated as very dangerous which may lead to sudden cardiac arrest. The incidence and prevalence of cardiac anomalies seeks early detection of arrhythmias using automated classification techniques. In the past, numerous automated arrhythmia detection techniques have been developed that are based on electrocardiogram (ECG) signal analysis. Focusing on the prospective research in this field, this article reports a comprehensive review of existing techniques that are obtained using search engines such as IEEE explore, Google scholar and science direct. Based on the review, the existing techniques are broadly categorized into two types: machine-learning and deep-learning-based techniques. In this study, it is noticed that the performance of the machine-learning-based arrhythmia detection techniques depend on pre-processing of ECG signal, R-peaks detection, features extraction and classification tools while the deep-learning-based techniques do not require the features extraction step. Generally, the existing techniques utilize Massachusetts Institute of Technology-Beth Israel Hospital arrhythmia database to evaluate the classification performance. The classification performance of automated techniques also depends on ECG data used for training and testing of the classifier. It is expected that the performance should be evaluated using a variety of ECG signals including the cases of inter-patient and intra-patient paradigm. The existing techniques also require to deal with the class-imbalance problem. In addition to this, a specific partition-ratio between training and testing datasets should be maintained for fair comparison of performance of different techniques.
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Affiliation(s)
- Chandan Kumar Jha
- Department of Electronics & Communication Engineering, Indian Institute of Information Technology Bhagalpur, India
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5
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Neri L, Gallelli I, Dall'Olio M, Lago J, Borghi C, Diemberger I, Corazza I. Validation of a New and Straightforward Algorithm to Evaluate Signal Quality during ECG Monitoring with Wearable Devices Used in a Clinical Setting. Bioengineering (Basel) 2024; 11:222. [PMID: 38534496 DOI: 10.3390/bioengineering11030222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Revised: 02/03/2024] [Accepted: 02/23/2024] [Indexed: 03/28/2024] Open
Abstract
BACKGROUND Wearable devices represent a new approach for monitoring key clinical parameters, such as ECG signals, for research and health purposes. These devices could outcompete medical devices in terms of affordability and use in out-clinic settings, allowing remote monitoring. The major limitation, especially when compared to implantable devices, is the presence of artifacts. Several authors reported a relevant percentage of recording time with poor/unusable traces for ECG, potentially hampering the use of these devices for this purpose. For this reason, it is of the utmost importance to develop a simple and inexpensive system enabling the user of the wearable devices to have immediate feedback on the quality of the acquired signal, allowing for real-time correction. METHODS A simple algorithm that can work in real time to verify the quality of the ECG signal (acceptable and unacceptable) was validated. Based on simple statistical parameters, the algorithm was blindly tested by comparison with ECG tracings previously classified by two expert cardiologists. RESULTS The classifications of 7200 10s-signal samples acquired on 20 patients with a commercial wearable ECG monitor were compared. The algorithm has an overall efficiency of approximately 95%, with a sensitivity of 94.7% and a specificity of 95.3%. CONCLUSIONS The results demonstrate that even a simple algorithm can be used to classify signal coarseness, and this could allow real-time intervention by the subject or the technician.
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Affiliation(s)
- Luca Neri
- Division of Cardiology, Department of Medicine, Johns Hopkins University, Baltimore, MD 21218, USA
- Department of Medical and Surgical Sciences, University of Bologna, 40126 Bologna, Italy
| | | | | | - Jessica Lago
- Department of Medical and Surgical Sciences, University of Bologna, 40126 Bologna, Italy
| | - Claudio Borghi
- Department of Medical and Surgical Sciences, University of Bologna, 40126 Bologna, Italy
- IRCCS AOU, Policlinico di S. Orsola, 40138 Bologna, Italy
| | - Igor Diemberger
- Department of Medical and Surgical Sciences, University of Bologna, 40126 Bologna, Italy
- IRCCS AOU, Policlinico di S. Orsola, 40138 Bologna, Italy
| | - Ivan Corazza
- Department of Medical and Surgical Sciences, University of Bologna, 40126 Bologna, Italy
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6
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Juarez-Orozco LE, Niemi M, Yeung MW, Benjamins JW, Maaniitty T, Teuho J, Saraste A, Knuuti J, van der Harst P, Klén R. Hybridizing machine learning in survival analysis of cardiac PET/CT imaging. J Nucl Cardiol 2023; 30:2750-2759. [PMID: 37656345 PMCID: PMC10682215 DOI: 10.1007/s12350-023-03359-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Accepted: 07/07/2023] [Indexed: 09/02/2023]
Abstract
BACKGROUND Machine Learning (ML) allows integration of the numerous variables delivered by cardiac PET/CT, while traditional survival analysis can provide explainable prognostic estimates from a restricted number of input variables. We implemented a hybrid ML-and-survival analysis of multimodal PET/CT data to identify patients who developed myocardial infarction (MI) or death in long-term follow up. METHODS Data from 739 intermediate risk patients who underwent coronary CT and selectively stress 15O-water-PET perfusion were analyzed for the occurrence of MI and all-cause mortality. Images were evaluated segmentally for atherosclerosis and absolute myocardial perfusion through 75 variables that were integrated through ML into an ML-CCTA and an ML-PET score. These scores were then modeled along with clinical variables through Cox regression. This hybridized model was compared against an expert interpretation-based and a calcium score-based model. RESULTS Compared with expert- and calcium score-based models, the hybridized ML-survival model showed the highest performance (CI .81 vs .71 and .64). The strongest predictor for outcomes was the ML-CCTA score. CONCLUSION Prognostic modeling of PET/CT data for the long-term occurrence of adverse events may be improved through ML imaging score integration and subsequent traditional survival analysis with clinical variables. This hybridization of methods offers an alternative to traditional survival modeling of conventional expert image scoring and interpretation.
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Affiliation(s)
- Luis Eduardo Juarez-Orozco
- Department of Cardiology, Division Heart & Lungs, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
- Department of Cardiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
- Turku PET Centre, University of Turku and Turku University Hospital, Kiinamyllynkatu 4-8, 20520, Turku, Finland.
| | - Mikael Niemi
- Turku PET Centre, University of Turku and Turku University Hospital, Kiinamyllynkatu 4-8, 20520, Turku, Finland
| | - Ming Wai Yeung
- Department of Cardiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands
| | - Jan Walter Benjamins
- Department of Cardiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands
| | - Teemu Maaniitty
- Turku PET Centre, University of Turku and Turku University Hospital, Kiinamyllynkatu 4-8, 20520, Turku, Finland
| | - Jarmo Teuho
- Turku PET Centre, University of Turku and Turku University Hospital, Kiinamyllynkatu 4-8, 20520, Turku, Finland
| | - Antti Saraste
- Turku PET Centre, University of Turku and Turku University Hospital, Kiinamyllynkatu 4-8, 20520, Turku, Finland
- Heart Center, Turku University Hospital, Turku, Finland
| | - Juhani Knuuti
- Turku PET Centre, University of Turku and Turku University Hospital, Kiinamyllynkatu 4-8, 20520, Turku, Finland
| | - Pim van der Harst
- Department of Cardiology, Division Heart & Lungs, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands
- Department of Cardiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands
| | - Riku Klén
- Turku PET Centre, University of Turku and Turku University Hospital, Kiinamyllynkatu 4-8, 20520, Turku, Finland
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Sharma A, Sawant N, Patidar S. A scalogram tensor decomposition based ECG quality assessment. J Electrocardiol 2023; 81:169-175. [PMID: 37741271 DOI: 10.1016/j.jelectrocard.2023.09.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Revised: 08/04/2023] [Accepted: 09/02/2023] [Indexed: 09/25/2023]
Abstract
ECG quality assessment is crucial for reducing false alarms and physician strain in automated diagnosis of cardiovascular diseases. Recent researches have focused on constructing an automatic noisy ECG record rejection mechanism. This work develops a noisy ECG record rejection system using scalogram and Tucker tensor decomposition. The system can reject ECG records, which cannot be analyzed or diagnosed. Scalogram of all 12‑lead ECG signals per subject are stacked to form a 3-way tensor. Tucker tensor decomposition is applied with empirical settings to obtain the core tensor. The core tensor is reshaped to form the latent features set. When tested using the PhysioNet challenge 2011 dataset in five-fold cross validation settings, the RusBoost ensemble classifier proved to be a very reliable option, producing an accuracy of 92.4% along with sensitivity of 87.1% and specificity of 93.5%. According to the experimental findings, combining the scalogram with Tucker tensor decomposition yields competitive performance and has the potential to be used in actual evaluation of ECG quality.
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Affiliation(s)
| | - Nidhi Sawant
- National Institute of Technology Goa, Goa, India
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Chaubey K, Saha S. Electrocardiogram morphological arrhythmia classification using fuzzy entropy-based feature selection and optimal classifier. Biomed Phys Eng Express 2023; 9:065015. [PMID: 37604128 DOI: 10.1088/2057-1976/acf222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2023] [Accepted: 08/21/2023] [Indexed: 08/23/2023]
Abstract
Electrocardiogram (ECG) signal analysis has become significant in recent years as cardiac arrhythmia shares a major portion of all mortality worldwide. To detect these arrhythmias, computer-assisted algorithms play a pivotal role as beat-by-beat monitoring of holter ECG signals is required. In this paper, a morphological arrhythmia classification algorithm has been proposed to classify seven different ECG beats, namely Normal Beat (N), Left Bundle Branch Block Beat (L), Right Bundle Branch Block Beat (R), Atrial Premature Contraction Beat (A), Premature Ventricular Contraction Beat (V), Fusion of Normal and Ventricle Beat (F) and Pace Beat (P). A novel feature set of 25 attributes has been extracted from each ECG beat and ranked using the Fuzzy Entropy-based feature selection (FEBFS) technique. In addition, two distinct classifiers, support vector machine with radial basis function as the kernel (SVM-RBF) and weighted K-nearest neighbor (WKNN), are used to categorize ECG beats, and their performances are also evaluated after adjusting vital parameters. The performance of classifiers is compared for four different ECG beat segmentation approaches and further analyzed using three similarity measurement techniques and two fuzzy entropy methods while feature selection. The classifier results are also cross-validated using a 10-fold cross-validation scheme, and the MIT-BIH Arrhythmia Database has been used to validate the proposed work. After selecting 21 highly ranked features, WKNN achieves the best results with the nearest neighbor value K = 3 and cityblock distance metrics, with Average Sensitivity (Sen) = 94.89%, Positive Predictivity (Ppre) = 97.13%, Specificity (Spe) = 99.72%, F1 Score = 95.95%, and Overall Accuracy (Acc) = 99.15%. The novelty of this work relies on formulating a unique feature set, including proposed symbolic features, followed by the FEBFS technique making this algorithm efficient and reliable for morphological arrhythmia classification. The above results demonstrate that the proposed algorithm performs better than many existing state-of-the-art works.
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Affiliation(s)
- Krishnakant Chaubey
- Department of Electronics & Communication Engineering, National Institute of Technology Patna, Ashok Raj Path, Patna, 800005, Bihar, India
| | - Seemanti Saha
- Department of Electronics & Communication Engineering, National Institute of Technology Patna, Ashok Raj Path, Patna, 800005, Bihar, India
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Bond A, Mccay K, Lal S. Artificial intelligence & clinical nutrition: What the future might have in store. Clin Nutr ESPEN 2023; 57:542-549. [PMID: 37739704 DOI: 10.1016/j.clnesp.2023.07.082] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2023] [Revised: 07/02/2023] [Accepted: 07/17/2023] [Indexed: 09/24/2023]
Abstract
Artificial Intelligence (AI) is a rapidly emerging technology in healthcare that has the potential to revolutionise clinical nutrition. AI can assist in analysing complex data, interpreting medical images, and providing personalised nutrition interventions for patients. Clinical nutrition is a critical aspect of patient care, and AI can help clinicians make more informed decisions regarding patients' nutritional requirements, disease prevention, and management. AI algorithms can analyse large datasets to identify novel associations between diet and disease outcomes, enabling clinicians to make evidence-based nutritional recommendations. AI-powered devices and applications can also assist in tracking dietary intake, providing feedback, and motivating patients towards healthier food choices. However, the adoption of AI in clinical nutrition raises several ethical and regulatory concerns, such as data privacy and bias. Further research is needed to assess the clinical effectiveness and safety of AI-powered nutrition interventions. In conclusion, AI has the potential to transform clinical nutrition, but its integration into clinical practice should be carefully monitored to ensure patient safety and benefit. This article discusses the current and future applications of AI in clinical nutrition and highlights its potential benefits.
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Affiliation(s)
- Ashley Bond
- Intestinal Failure Unit, Salford Royal Foundation Trust, UK; University of Manchester, Manchester, UK.
| | - Kevin Mccay
- Manchester Metropolitan University, Manchester, UK; Northern Care Alliance NHS Foundation Trust, Salford Royal Hospital, Salford, UK
| | - Simon Lal
- Intestinal Failure Unit, Salford Royal Foundation Trust, UK; University of Manchester, Manchester, UK
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10
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Holgado-Cuadrado R, Plaza-Seco C, Lovisolo L, Blanco-Velasco M. Characterization of noise in long-term ECG monitoring with machine learning based on clinical criteria. Med Biol Eng Comput 2023; 61:2227-2240. [PMID: 37010711 PMCID: PMC10412684 DOI: 10.1007/s11517-023-02802-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Accepted: 01/31/2023] [Indexed: 04/04/2023]
Abstract
Noise and artifacts affect strongly the quality of the electrocardiogram (ECG) in long-term ECG monitoring (LTM), making some of its parts impractical for diagnosis. The clinical severity of noise defines a qualitative quality score according to the manner clinicians make the interpretation of the ECG, in contrast to assess noise from a quantitative standpoint. So clinical noise refers to a scale of different levels of qualitative severity of noise which aims at elucidating which ECG fragments are valid to achieve diagnosis from a clinical point of view, unlike the traditional approach, which assesses noise in terms of quantitative severity. This work proposes the use of machine learning (ML) techniques to categorize different qualitative noise severity using a database annotated according to a clinical noise taxonomy as gold standard. A comparative study is carried out using five representative ML methods, namely, K neareast neighbors, decision trees, support vector machine, single-layer perceptron, and random forest. The models are fed by signal quality indexes characterizing the waveform in time and frequency domains, as well as from a statistical viewpoint, to distinguish between clinically valid ECG segments from invalid ones. A solid methodology to prevent overfitting to both the dataset and the patient is developed, taking into account balance of classes, patient separation, and patient rotation in the test set. All the proposed learning systems have demonstrated good classification performance, attaining a recall, precision, and F1 score up to 0.78, 0.80, and 0.77, respectively, in the test set by a single-layer perceptron approach. These systems provide a classification solution for assessing the clinical quality of the ECG taken from LTM recordings. Graphical Abstract Clinical Noise Severity Classification based on Machine Learning techniques towards Long-Term ECG Monitoring.
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Affiliation(s)
- Roberto Holgado-Cuadrado
- Department for Signal Theory and Communications, Universidad de Alcalá, 28800 Alcalá de Henares, Madrid Spain
| | - Carmen Plaza-Seco
- Department for Signal Theory and Communications, Universidad de Alcalá, 28800 Alcalá de Henares, Madrid Spain
| | - Lisandro Lovisolo
- Department for Signal Theory and Communications, Universidad de Alcalá, 28800 Alcalá de Henares, Madrid Spain
- DETEL - Dep. of Electronics and Communications Engineering, UERJ - Rio de Janeiro State University, Rio de Janeiro, Brazil
| | - Manuel Blanco-Velasco
- Department for Signal Theory and Communications, Universidad de Alcalá, 28800 Alcalá de Henares, Madrid Spain
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Rahman S, Habib A, Karmakar C, Yearwood J. Impact of synthetic noise signature and physiologic ECG signal on designing ML-based ECG noise detection framework. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2023; 2023:1-4. [PMID: 38083183 DOI: 10.1109/embc40787.2023.10341145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Automatic signal analysis using artificial intelligence is getting popular in digital healthcare, such as ECG rhythm analysis, where ECG signals are collected from traditional ECG machines or wearable ECG sensors. However, the risk of using an automated system for ECG analysis when noise is present can lead to incorrect diagnosis or treatment decisions. A noise detector is crucial to minimise the risk of incorrect diagnosis. Machine learning (ML) models are used in ECG noise detection before clinical decision-making systems to mitigate false alarms. However, it is essential to prove the generalisation capability of the ML model in different situations. ML models performance is 50% lesser when the model is trained with synthetic and tested with physiologic ECG datasets compared to trained and tested with physiologic ECG datasets. This suggests that the ML model must be trained with physiologic ECG datasets rather than synthetic ones or add more various types of noise in synthetic ECG datasets that can mimic physiologic ECG.Clinical relevance- ML model trained with synthetic noisy ECG can increase the 50% misclassification rate in ECG noise detection compared to training with physiologic ECG datasets. The wrong classification of noise-free and noisy ECG will lead to misdiagnosis regarding the patient's condition, which could be a cause of death.
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Liu S, Zhong G, He J, Yang C. Multi-task cascaded assessment of signal quality for long-term single-lead ECG monitoring. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2023.104674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/13/2023]
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13
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Hassaballah M, Wazery YM, Ibrahim IE, Farag A. ECG Heartbeat Classification Using Machine Learning and Metaheuristic Optimization for Smart Healthcare Systems. Bioengineering (Basel) 2023; 10:bioengineering10040429. [PMID: 37106616 PMCID: PMC10135930 DOI: 10.3390/bioengineering10040429] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2023] [Revised: 03/14/2023] [Accepted: 03/15/2023] [Indexed: 03/31/2023] Open
Abstract
Early diagnosis and classification of arrhythmia from an electrocardiogram (ECG) plays a significant role in smart healthcare systems for the health monitoring of individuals with cardiovascular diseases. Unfortunately, the nonlinearity and low amplitude of ECG recordings make the classification process difficult. Thus, the performance of most traditional machine learning (ML) classifiers is questionable, as the interrelationship between the learning parameters is not well modeled, especially for data features with high dimensions. To address the limitations of ML classifiers, this paper introduces an automatic arrhythmia classification approach based on the integration of a recent metaheuristic optimization (MHO) algorithm and ML classifiers. The role of the MHO is to optimize the search parameters of the classifiers. The approach consists of three steps: the preprocessing of the ECG signal, the extraction of the features, and the classification. The learning parameters of four supervised ML classifiers were utilized for the classification task; support vector machine (SVM), k-nearest neighbors (kNNs), gradient boosting decision tree (GBDT), and random forest (RF) were optimized using the MHO algorithm. To validate the advantage of the proposed approach, several experiments were conducted on three common databases, including the Massachusetts Institute of Technology (MIT-BIH), the European Society of Cardiology ST-T (EDB), and the St. Petersburg Institute of Cardiological Techniques 12-lead Arrhythmia (INCART). The obtained results showed that the performance of all the tested classifiers were significantly improved after integrating the MHO algorithm, with the average ECG arrhythmia classification accuracy reaching 99.92% and a sensitivity of 99.81%, outperforming the state-of the-art methods.
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A Two-Step Approach to Overcoming Data Imbalance in the Development of an Electrocardiography Data Quality Assessment Algorithm: A Real-World Data Challenge. Biomimetics (Basel) 2023; 8:biomimetics8010119. [PMID: 36975349 PMCID: PMC10046279 DOI: 10.3390/biomimetics8010119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 03/06/2023] [Accepted: 03/11/2023] [Indexed: 03/14/2023] Open
Abstract
Continuously acquired biosignals from patient monitors contain significant amounts of unusable data. During the development of a decision support system based on continuously acquired biosignals, we developed machine and deep learning algorithms to automatically classify the quality of ECG data. A total of 31,127 twenty-s ECG segments of 250 Hz were used as the training/validation dataset. Data quality was categorized into three classes: acceptable, unacceptable, and uncertain. In the training/validation dataset, 29,606 segments (95%) were in the acceptable class. Two one-step, three-class approaches and two two-step binary sequential approaches were developed using random forest (RF) and two-dimensional convolutional neural network (2D CNN) classifiers. Four approaches were tested on 9779 test samples from another hospital. On the test dataset, the two-step 2D CNN approach showed the best overall accuracy (0.85), and the one-step, three-class 2D CNN approach showed the worst overall accuracy (0.54). The most important parameter, precision in the acceptable class, was greater than 0.9 for all approaches, but recall in the acceptable class was better for the two-step approaches: one-step (0.77) vs. two-step RF (0.89) and one-step (0.51) vs. two-step 2D CNN (0.94) (p < 0.001 for both comparisons). For the ECG quality classification, where substantial data imbalance exists, the 2-step approaches showed more robust performance than the one-step approach. This algorithm can be used as a preprocessing step in artificial intelligence research using continuously acquired biosignals.
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15
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de Moraes JL, Paixão GMM, Gomes PR, Mendes EMAM, Ribeiro ALP, Beda A. A novel algorithm to assess the quality of 12-lead ECG recordings: validation in a real telecardiology application. Physiol Meas 2023; 44. [PMID: 36896841 DOI: 10.1088/1361-6579/acbc09] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Accepted: 02/14/2023] [Indexed: 03/11/2023]
Abstract
Objective. Automatic detection of Electrocardiograms (ECG) quality is fundamental to minimize costs and risks related to delayed diagnosis due to low ECG quality. Most algorithms to assess ECG quality include non-intuitive parameters. Also, they were developed using data non-representative of a real-world scenario, in terms of pathological ECGs and overrepresentation of low-quality ECG. Therefore, we introduce an algorithm to assess 12-lead ECG quality, Noise Automatic Classification Algorithm (NACA) developed in Telehealth Network of Minas Gerais (TNMG).Approach. NACA estimates a signal-to-noise ratio (SNR) for each ECG lead, where 'signal' is an estimated heartbeat template, and 'noise' is the discrepancy between the template and the ECG heartbeat. Then, clinically-inspired rules based on SNR are used to classify the ECG as acceptable or unacceptable. NACA was compared with Quality Measurement Algorithm (QMA), the winner of Computing in Cardiology Challenge 2011 (ChallengeCinC) by using five metrics: sensitivity (Se), specificity (Sp), positive predictive value (PPV),F2, and cost reduction resulting from adoption of the algorithm. Two datasets were used for validation: TestTNMG, consisting of 34 310 ECGs received by TNMG (1% unacceptable and 50% pathological); ChallengeCinC, consisting of 1000 ECGs (23% unacceptable, higher than real-world scenario).Main results. Both algorithms reached a similar performance on ChallengeCinC, although NACA performed considerably better than QMA in TestTNMG (Se = 0.89 versus 0.21; Sp = 0.99 versus 0.98; PPV = 0.59 versus 0.08;F2= 0.76 versus 0.16 and cost reduction 2.3 ± 1.8% versus 0.3 ± 0.3%, respectively).Significance. Implementing of NACA in a telecardiology service results in evident health and financial benefits for the patients and the healthcare system.
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Affiliation(s)
- Jermana L de Moraes
- Postgraduate Program of Electrical Engineering, Federal University of Minas Gerais, Belo Horizonte, Brazil.,Federal University of Ceara, Sobral, Brazil
| | | | - Paulo R Gomes
- Teleheath Center from Hospital das Clínicas, UFMG, Belo Horizonte, Brazil
| | - Eduardo M A M Mendes
- Postgraduate Program of Electrical Engineering, Federal University of Minas Gerais, Belo Horizonte, Brazil
| | | | - Alessandro Beda
- Postgraduate Program of Electrical Engineering, Federal University of Minas Gerais, Belo Horizonte, Brazil
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Nagaraj J, Leema A. Light weight multi-branch network-based extraction and classification of myocardial infarction from 12 lead electrocardiogram images. THE IMAGING SCIENCE JOURNAL 2023. [DOI: 10.1080/13682199.2023.2178608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
Affiliation(s)
- Jothiaruna Nagaraj
- School of Information Technology and Engineering, Vellore Institute of Technology, Vellore, India
| | - Anny Leema
- School of Computer Science and Engineering, Vellore Institute of Technology, Vellore, India
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Wang Z, Stavrakis S, Yao B. Hierarchical deep learning with Generative Adversarial Network for automatic cardiac diagnosis from ECG signals. Comput Biol Med 2023; 155:106641. [PMID: 36773553 DOI: 10.1016/j.compbiomed.2023.106641] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Revised: 01/11/2023] [Accepted: 02/05/2023] [Indexed: 02/10/2023]
Abstract
Cardiac disease is the leading cause of death in the US. Accurate heart disease detection is critical to timely medical treatment to save patients' lives. Routine use of the electrocardiogram (ECG) is the most common method for physicians to assess the cardiac electrical activities and detect possible abnormal conditions. Fully utilizing the ECG data for reliable heart disease detection depends on developing effective analytical models. In this paper, we propose a two-level hierarchical deep learning framework with Generative Adversarial Network (GAN) for ECG signal analysis. The first-level model is composed of a Memory-Augmented Deep AutoEncoder with GAN (MadeGAN), which aims to differentiate abnormal signals from normal ECGs for anomaly detection. The second-level learning aims at robust multi-class classification for different arrhythmia identification, which is achieved by integrating the transfer learning technique to transfer knowledge from the first-level learning with the multi-branching architecture to handle the data-lacking and imbalanced data issues. We evaluate the performance of the proposed framework using real-world ECG data from the MIT-BIH arrhythmia database. Experimental results show that our proposed model outperforms existing methods that are commonly used in current practice.
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Affiliation(s)
- Zekai Wang
- Department of Industrial & Systems Engineering, The University of Tennessee, Knoxville, TN, 37996, USA
| | - Stavros Stavrakis
- University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA
| | - Bing Yao
- Department of Industrial & Systems Engineering, The University of Tennessee, Knoxville, TN, 37996, USA.
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Baldazzi G, Sulas E, Vullings R, Urru M, Tumbarello R, Raffo L, Pani D. Automatic signal quality assessment of raw trans-abdominal biopotential recordings for non-invasive fetal electrocardiography. Front Bioeng Biotechnol 2023; 11:1059119. [PMID: 36923461 PMCID: PMC10009887 DOI: 10.3389/fbioe.2023.1059119] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Accepted: 02/13/2023] [Indexed: 03/02/2023] Open
Abstract
Introduction: Wearable monitoring systems for non-invasive multi-channel fetal electrocardiography (fECG) can support fetal surveillance and diagnosis during pregnancy, thus enabling prompt treatment. In these embedded systems, power saving is the key to long-term monitoring. In this regard, the computational burden of signal processing methods implemented for the fECG extraction from the multi-channel trans-abdominal recordings plays a non-negligible role. In this work, a supervised machine-learning approach for the automatic selection of the most informative raw abdominal recordings in terms of fECG content, i.e., those potentially leading to good-quality, non-invasive fECG signals from a low number of channels, is presented and evaluated. Methods: For this purpose, several signal quality indexes from the scientific literature were adopted as features to train an ensemble tree classifier, which was asked to perform a binary classification between informative and non-informative abdominal channels. To reduce the dimensionality of the classification problem, and to improve the performance, a feature selection approach was also implemented for the identification of a subset of optimal features. 10336 5-s long signal segments derived from a real dataset of multi-channel trans-abdominal recordings acquired from 55 voluntary pregnant women between the 21st and the 27th week of gestation, with healthy fetuses, were adopted to train and test the classification approach in a stratified 10-time 10-fold cross-validation scheme. Abdominal recordings were firstly pre-processed and then labeled as informative or non-informative, according to the signal-to-noise ratio exhibited by the extracted fECG, thus producing a balanced dataset of bad and good quality abdominal channels. Results and Discussion: Classification performance revealed an accuracy above 86%, and more than 88% of those channels labeled as informative were correctly identified. Furthermore, by applying the proposed method to 50 annotated 24-channel recordings from the NInFEA dataset, a significant improvement was observed in fetal QRS detection when only the channels selected by the proposed approach were considered, compared with the use of all the available channels. As such, our findings support the hypothesis that performing a channel selection by looking directly at the raw abdominal signals, regardless of the fetal presentation, can produce a reliable measurement of fetal heart rate with a lower computational burden.
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Affiliation(s)
- Giulia Baldazzi
- Department of Electrical and Electronic Engineering, University of Cagliari, Cagliari, Italy
| | - Eleonora Sulas
- Department of Electrical and Electronic Engineering, University of Cagliari, Cagliari, Italy
| | - Rik Vullings
- Department of Electrical Engineering, Eindhoven University of Technology, Eindhoven, Netherlands
| | - Monica Urru
- Pediatric Cardiology and Congenital Heart Disease Unit, ARNAS G. Brotzu Hospital, Cagliari, Italy
| | - Roberto Tumbarello
- Pediatric Cardiology and Congenital Heart Disease Unit, ARNAS G. Brotzu Hospital, Cagliari, Italy
| | - Luigi Raffo
- Department of Electrical and Electronic Engineering, University of Cagliari, Cagliari, Italy
| | - Danilo Pani
- Department of Electrical and Electronic Engineering, University of Cagliari, Cagliari, Italy
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Unsupervised Learning-Based Non-Invasive Fetal ECG Muti-Level Signal Quality Assessment. BIOENGINEERING (BASEL, SWITZERLAND) 2023; 10:bioengineering10010066. [PMID: 36671638 PMCID: PMC9854747 DOI: 10.3390/bioengineering10010066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Revised: 12/16/2022] [Accepted: 12/26/2022] [Indexed: 01/06/2023]
Abstract
OBJECTIVE To monitor fetal health and growth, fetal heart rate is a critical indicator. The non-invasive fetal electrocardiogram is a widely employed measurement for fetal heart rate estimation, which is extracted from the electrodes placed on the surface of the maternal abdomen. The qualities of the fetal ECG recordings, however, are frequently affected by the noises from various interference sources. In general, the fetal heart rate estimates are unreliable when low-quality fetal ECG signals are used for fetal heart rate estimation, which makes accurate fetal heart rate estimation a challenging task. So, the signal quality assessment for the fetal ECG records is an essential step before fetal heart rate estimation. In other words, some low-quality fetal ECG signal segments are supposed to be detected and removed by utilizing signal quality assessment, so as to improve the accuracy of fetal heart rate estimation. A few supervised learning-based fetal ECG signal quality assessment approaches have been introduced and shown to accurately classify high- and low-quality fetal ECG signal segments, but large fetal ECG datasets with quality annotation are required in these methods. Yet, the labeled fetal ECG datasets are limited. Proposed methods: An unsupervised learning-based multi-level fetal ECG signal quality assessment approach is proposed in this paper for identifying three levels of fetal ECG signal quality. We extracted some features associated with signal quality, including entropy-based features, statistical features, and ECG signal quality indices. Additionally, an autoencoder-based feature is calculated, which is related to the reconstruction error of the spectrograms generated from fetal ECG signal segments. The high-, medium-, and low-quality fetal ECG signal segments are classified by inputting these features into a self-organizing map. MAIN RESULTS The experimental results showed that our proposal achieved a weighted average F1-score of 90% in three-level fetal ECG signal quality classification. Moreover, with the acceptable removal of detected low-quality signal segments, the errors of fetal heart rate estimation were reduced to a certain extent.
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20
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A novel attentional deep neural network-based assessment method for ECG quality. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104064] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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21
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van der Bijl K, Elgendi M, Menon C. Automatic ECG Quality Assessment Techniques: A Systematic Review. Diagnostics (Basel) 2022; 12:2578. [PMID: 36359421 PMCID: PMC9689601 DOI: 10.3390/diagnostics12112578] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Revised: 10/19/2022] [Accepted: 10/21/2022] [Indexed: 11/25/2023] Open
Abstract
Cardiovascular diseases are the leading cause of death, globally. Stroke and heart attacks account for more than 80% of cardiovascular disease-related deaths. To prevent patient mismanagement and potentially save lives, effective screening at an early stage is needed. Diagnosis is typically made using an electrocardiogram (ECG) analysis. However, ECG recordings are often corrupted by different types of noise, degrading the quality of the recording and making diagnosis more difficult. This paper reviews research on automatic ECG quality assessment techniques used in studies published from 2012-2022. The CinC11 Dataset is most often used for training and testing algorithms. Only one study tested its algorithm on people in real-time, but it did not specify the demographic data of the subjects. Most of the reviewed papers evaluated the quality of the ECG recordings per single lead. The accuracy of the algorithms reviewed in this paper range from 85.75% to 97.15%. More clarity on the research methods used is needed to improve the quality of automatic ECG quality assessment techniques and implement them in a clinical setting. This paper discusses the possible shortcomings in current research and provides recommendations on how to advance the field of automatic ECG quality assessment.
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22
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Bizzego A, Neoh M, Gabrieli G, Esposito G. A Machine Learning Perspective on fNIRS Signal Quality Control Approaches. IEEE Trans Neural Syst Rehabil Eng 2022; 30:2292-2300. [PMID: 35951575 DOI: 10.1109/tnsre.2022.3198110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Despite a rise in the use of functional Near Infra-Red Spectroscopy (fNIRS) to study neural systems, fNIRS signal processing is not standardized and is highly affected by empirical and manual procedures. At the beginning of any signal processing procedure, Signal Quality Control (SQC) is critical to prevent errors and unreliable results. In fNIRS analysis, SQC currently relies on applying empirical thresholds to handcrafted Signal Quality Indicators (SQIs). In this study, we use a dataset of fNIRS signals (N = 1,340) recorded from 67 subjects, and manually label the signal quality of a subset of segments (N = 548) to investigate the pitfalls of current practices while exploring the opportunities provided by Deep Learning approaches. We show that SQIs statistically discriminate signals with bad quality, but the identification by means of empirical thresholds lacks sensitivity. Alternatively to manual thresholding, conventional machine learning models based on the SQIs have been proven more accurate, with end-to-end approaches, based on Convolutional Neural Networks, capable of further improving the performance. The proposed approach, based on machine learning, represents a more objective SQC for fNIRS and moves towards the use of fully automated and standardized procedures.
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23
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Liu J, Li Z, Jin Y, Liu Y, Liu C, Zhao L, Chen X. A review of arrhythmia detection based on electrocardiogram with artificial intelligence. Expert Rev Med Devices 2022; 19:549-560. [DOI: 10.1080/17434440.2022.2115887] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Affiliation(s)
- Jinlei Liu
- School of Mechanical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China
| | - Zhiyuan Li
- School of Mechanical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China
| | - Yanrui Jin
- School of Mechanical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China
| | - Yunqing Liu
- School of Mechanical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China
| | - Chengliang Liu
- School of Mechanical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China
- MoE Key Lab of Artificial Intelligence, AI Institute, Shanghai Jiao Tong University, China
| | - Liqun Zhao
- Department of Cardiology, Shanghai First People’s Hospital Affiliated to Shanghai Jiao Tong University, 100 Haining Road, Shanghai 200080, China
| | - Xiaojun Chen
- School of Mechanical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China
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Shi X, Yamamoto K, Ohtsuki T, Matsui Y, Owada K. Non-invasive Fetal ECG Signal Quality Assessment based on Unsupervised Learning Approach. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2022; 2022:1296-1299. [PMID: 36086629 DOI: 10.1109/embc48229.2022.9870908] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
The non-invasive fetal electrocardiogram (FECG) derived from abdominal surface electrodes has been widely used for fetal heart rate (FHR) monitoring to assess fetal well-being. However, the accuracy of FECG-based FHR estimation heavily depends on the quality of FECG signal itself, which can generally be affected by several interference sources such as maternal heart activities and fetal movements. Hence, FECG signal quality assessment (SQA) is an essential task to improve the accuracy of FHR estimation by removing or interpolating low-quality FECG signals. In recent research, various SQA methods based on supervised learning have been proposed. Although these methods could perform accurate SQA, they require large labeled datasets. Nevertheless, the labeled datasets for the FECG SQA are very limited. In this paper, to address this limitation, we propose an unsupervised learning-based SQA method for identifying high and low-quality FECG signal segments. Specifically, a fully convolutional network (FCN)-based autoencoder (AE) is trained for reconstructing a spectrogram derived from FECG. An AE-based feature related to reconstruction error is then calculated to identify high and low-quality FECG segments. In addition, entropy-based features, statistical features, and ECG signal quality indices (SQIs) are also extracted. The high and low-quality segments are identified by feeding the extracted features into self-organizing map (SOM). The experimental results showed that our proposal achieved an accuracy of 98% in high and low-quality signal classification.
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Liu F, Xia S, Wei S, Chen L, Ren Y, Ren X, Xu Z, Ai S, Liu C. Wearable Electrocardiogram Quality Assessment Using Wavelet Scattering and LSTM. Front Physiol 2022; 13:905447. [PMID: 35845989 PMCID: PMC9281614 DOI: 10.3389/fphys.2022.905447] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2022] [Accepted: 05/30/2022] [Indexed: 11/13/2022] Open
Abstract
As the fast development of wearable devices and Internet of things technologies, real-time monitoring of ECG signals is quite critical for cardiovascular diseases. However, dynamic ECG signals recorded in free-living conditions suffered from extremely serious noise pollution. Presently, most algorithms for ECG signal evaluation were designed to divide signals into acceptable and unacceptable. Such classifications were not enough for real-time cardiovascular disease monitoring. In the study, a wearable ECG quality database with 50,085 recordings was built, including A/B/C (or high quality/medium quality/low quality) three quality grades (A: high quality signals can be used for CVD detection; B: slight contaminated signals can be used for heart rate extracting; C: heavily polluted signals need to be abandoned). A new SQA classification method based on a three-layer wavelet scattering network and transfer learning LSTM was proposed in this study, which can extract more systematic and comprehensive characteristics by analyzing the signals thoroughly and deeply. Experimental results (mACC = 98.56%, mF1 = 98.55%, SeA = 97.90%, SeB = 98.16%, SeC = 99.60%, +PA = 98.52%, +PB = 97.60%, +PC = 99.54%, F1A = 98.20%, F1B = 97.90%, F1C = 99.60%) and real data validations proved that this proposed method showed the high accuracy, robustness, and computationally efficiency. It has the ability to evaluate the long-term dynamic ECG signal quality. It is advantageous to promoting cardiovascular disease monitoring by removing contaminating signals and selecting high-quality signal segments for further analysis.
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Affiliation(s)
- Feifei Liu
- School of Science, Shandong Jianzhu University, Jinan, China
| | - Shengxiang Xia
- School of Science, Shandong Jianzhu University, Jinan, China
- *Correspondence: Shengxiang Xia, ; Chengyu Liu,
| | - Shoushui Wei
- School of Control Science and Engineering, Shandong University, Jinan, China
| | - Lei Chen
- School of Science and Technology, Shandong University of Traditional Chinese Medicine, Jinan, China
| | - Yonglian Ren
- School of Science, Shandong Jianzhu University, Jinan, China
| | - Xiaofei Ren
- School of Information and Electrical Engineering, Shandong Jianzhu University, Jinan, China
| | - Zheng Xu
- School of Science, Shandong Jianzhu University, Jinan, China
| | - Sen Ai
- School of Science, Shandong Jianzhu University, Jinan, China
| | - Chengyu Liu
- School of Instrument Science and Engineering, Southeast University, Nanjing, China
- *Correspondence: Shengxiang Xia, ; Chengyu Liu,
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A large-scale multi-label 12-lead electrocardiogram database with standardized diagnostic statements. Sci Data 2022; 9:272. [PMID: 35672420 PMCID: PMC9174207 DOI: 10.1038/s41597-022-01403-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 05/18/2022] [Indexed: 12/23/2022] Open
Abstract
Deep learning approaches have exhibited a great ability on automatic interpretation of the electrocardiogram (ECG). However, large-scale public 12-lead ECG data are still limited, and the diagnostic labels are not uniform, which increases the semantic gap between clinical practice. In this study, we present a large-scale multi-label 12-lead ECG database with standardized diagnostic statements. The dataset contains 25770 ECG records from 24666 patients, which were acquired from Shandong Provincial Hospital (SPH) between 2019/08 and 2020/08. The record length is between 10 and 60 seconds. The diagnostic statements of all ECG records are in full compliance with the AHA/ACC/HRS recommendations, which aims for the standardization and interpretation of the electrocardiogram, and consist of 44 primary statements and 15 modifiers as per the standard. 46.04% records in the dataset contain ECG abnormalities, and 14.45% records have multiple diagnostic statements. The dataset also contains additional patient demographics. Measurement(s) | 12-lead electrocardiogram | Technology Type(s) | EKG or ECG Monitor Device |
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Gajendran MK, Rohowetz LJ, Koulen P, Mehdizadeh A. Novel Machine-Learning Based Framework Using Electroretinography Data for the Detection of Early-Stage Glaucoma. Front Neurosci 2022; 16:869137. [PMID: 35600610 PMCID: PMC9115110 DOI: 10.3389/fnins.2022.869137] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Accepted: 03/28/2022] [Indexed: 01/05/2023] Open
Abstract
PurposeEarly-stage glaucoma diagnosis has been a challenging problem in ophthalmology. The current state-of-the-art glaucoma diagnosis techniques do not completely leverage the functional measures' such as electroretinogram's immense potential; instead, focus is on structural measures like optical coherence tomography. The current study aims to take a foundational step toward the development of a novel and reliable predictive framework for early detection of glaucoma using machine-learning-based algorithm capable of leveraging medically relevant information that ERG signals contain.MethodsERG signals from 60 eyes of DBA/2 mice were grouped for binary classification based on age. The signals were also grouped based on intraocular pressure (IOP) for multiclass classification. Statistical and wavelet-based features were engineered and extracted. Important predictors (ERG tests and features) were determined, and the performance of five machine learning-based methods were evaluated.ResultsRandom forest (bagged trees) ensemble classifier provided the best performance in both binary and multiclass classification of ERG signals. An accuracy of 91.7 and 80% was achieved for binary and multiclass classification, respectively, suggesting that machine-learning-based models can detect subtle changes in ERG signals if trained using advanced features such as those based on wavelet analyses.ConclusionsThe present study describes a novel, machine-learning-based method to analyze ERG signals providing additional information that may be used to detect early-stage glaucoma. Based on promising performance metrics obtained using the proposed machine-learning-based framework leveraging an established ERG data set, we conclude that the novel framework allows for detection of functional deficits of early/various stages of glaucoma in mice.
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Affiliation(s)
- Mohan Kumar Gajendran
- Department of Civil and Mechanical Engineering, School of Computing and Engineering, University of Missouri-Kansas City, Kansas City, MO, United States
| | - Landon J. Rohowetz
- Vision Research Center, Department of Ophthalmology, University of Missouri-Kansas City, Kansas City, MO, United States
| | - Peter Koulen
- Vision Research Center, Department of Ophthalmology, University of Missouri-Kansas City, Kansas City, MO, United States
- Department of Biomedical Sciences, University of Missouri-Kansas City, Kansas City, MO, United States
| | - Amirfarhang Mehdizadeh
- Department of Civil and Mechanical Engineering, School of Computing and Engineering, University of Missouri-Kansas City, Kansas City, MO, United States
- Vision Research Center, Department of Ophthalmology, University of Missouri-Kansas City, Kansas City, MO, United States
- *Correspondence: Amirfarhang Mehdizadeh
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Rahman S, Karmakar C, Natgunanathan I, Yearwood J, Palaniswami M. Robustness of electrocardiogram signal quality indices. J R Soc Interface 2022; 19:20220012. [PMID: 35414211 PMCID: PMC9006023 DOI: 10.1098/rsif.2022.0012] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Accepted: 03/23/2022] [Indexed: 12/15/2022] Open
Abstract
Electrocardiogram (ECG) signal quality indices (SQIs) are essential for improving diagnostic accuracy and reliability of ECG analysis systems. In various practical applications, the ECG signals are corrupted by different types of noise. These corrupted ECG signals often provide insufficient and incorrect information regarding a patient's health. To solve this problem, signal quality measurements should be made before an ECG signal is used for decision-making. This paper investigates the robustness of existing popular statistical signal quality indices (SSQIs): relative power of QRS complex (SQIp), skewness (SQIskew), signal-to-noise ratio (SQIsnr), higher order statistics SQI (SQIhos) and peakedness of kurtosis (SQIkur). We analysed the robustness of these SSQIs against different window sizes across diverse datasets. Results showed that the performance of SSQIs considerably fluctuates against varying datasets, whereas the impact of varying window sizes was minimal. This fluctuation occurred due to the use of a static threshold value for classifying noise-free ECG signals from the raw ECG signals. Another drawback of these SSQIs is the bias towards noise-free ECG signals, that limits their usefulness in clinical settings. In summary, the fixed threshold-based SSQIs cannot be used as a robust noise detection system. In order to solve this fixed threshold problem, other techniques can be developed using adaptive thresholds and machine-learning mechanisms.
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Affiliation(s)
- Saifur Rahman
- School of Information Technology, Deakin University, Geelong 3225, Australia
| | - Chandan Karmakar
- School of Information Technology, Deakin University, Geelong 3225, Australia
| | | | - John Yearwood
- School of Information Technology, Deakin University, Geelong 3225, Australia
| | - Marimuthu Palaniswami
- Department of Electrical and Electronic Engineering, University of Melbourne, Melbourne, Victoria 3010, Australia
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Toman O, Hnatkova K, Šišáková M, Smetana P, Huster KM, Barthel P, Novotný T, Andršová I, Schmidt G, Malik M. Short-Term Beat-to-Beat QT Variability Appears Influenced More Strongly by Recording Quality Than by Beat-to-Beat RR Variability. Front Physiol 2022; 13:863873. [PMID: 35431991 PMCID: PMC9011003 DOI: 10.3389/fphys.2022.863873] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Accepted: 02/28/2022] [Indexed: 12/14/2022] Open
Abstract
Increases in beat-to-beat variability of electrocardiographic QT interval duration have repeatedly been associated with increased risk of cardiovascular events and complications. The measurements of QT variability are frequently normalized for the underlying RR interval variability. Such normalization supports the concept of the so-called immediate RR effect which relates each QT interval to the preceding RR interval. The validity of this concept was investigated in the present study together with the analysis of the influence of electrocardiographic morphological stability on QT variability measurements. The analyses involved QT and RR measurements in 6,114,562 individual beats of 642,708 separate 10-s ECG samples recorded in 523 healthy volunteers (259 females). Only beats with high morphology correlation (r > 0.99) with representative waveforms of the 10-s ECG samples were analyzed, assuring that only good quality recordings were included. In addition to these high correlations, SDs of the ECG signal difference between representative waveforms and individual beats expressed morphological instability and ECG noise. In the intra-subject analyses of both individual beats and of 10-s averages, QT interval variability was substantially more strongly related to the ECG noise than to the underlying RR variability. In approximately one-third of the analyzed ECG beats, the prolongation or shortening of the preceding RR interval was followed by the opposite change of the QT interval. In linear regression analyses, underlying RR variability within each 10-s ECG sample explained only 5.7 and 11.1% of QT interval variability in females and males, respectively. On the contrary, the underlying ECG noise contents of the 10-s samples explained 56.5 and 60.1% of the QT interval variability in females and males, respectively. The study concludes that the concept of stable and uniform immediate RR interval effect on the duration of subsequent QT interval duration is highly questionable. Even if only stable beat-to-beat measurements of QT interval are used, the QT interval variability is still substantially influenced by morphological variability and noise pollution of the source ECG recordings. Even when good quality recordings are used, noise contents of the electrocardiograms should be objectively examined in future studies of QT interval variability.
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Affiliation(s)
- Ondřej Toman
- Department of Internal Medicine and Cardiology, University Hospital Brno, Brno, Czechia
- Department of Internal Medicine and Cardiology, Faculty of Medicine, Masaryk University, Brno, Czechia
| | - Katerina Hnatkova
- National Heart and Lung Institute, Imperial College, London, United Kingdom
| | - Martina Šišáková
- Department of Internal Medicine and Cardiology, University Hospital Brno, Brno, Czechia
- Department of Internal Medicine and Cardiology, Faculty of Medicine, Masaryk University, Brno, Czechia
| | | | | | - Petra Barthel
- Klinikum rechts der Isar, Technische Universität München, Munich, Germany
| | - Tomáš Novotný
- Department of Internal Medicine and Cardiology, University Hospital Brno, Brno, Czechia
- Department of Internal Medicine and Cardiology, Faculty of Medicine, Masaryk University, Brno, Czechia
| | - Irena Andršová
- Department of Internal Medicine and Cardiology, University Hospital Brno, Brno, Czechia
- Department of Internal Medicine and Cardiology, Faculty of Medicine, Masaryk University, Brno, Czechia
- *Correspondence: Irena Andršová
| | - Georg Schmidt
- Klinikum rechts der Isar, Technische Universität München, Munich, Germany
| | - Marek Malik
- Department of Internal Medicine and Cardiology, Faculty of Medicine, Masaryk University, Brno, Czechia
- National Heart and Lung Institute, Imperial College, London, United Kingdom
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Tan H, Lai J, Liu Y, Song Y, Wang J, Chen M, Yan Y, Zhong L, Feng Q, Yang W. Neural architecture search for real-time quality assessment of wearable multi-lead ECG on mobile devices. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103495] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Hybrid feature fusion for classification optimization of short ECG segment in IoT based intelligent healthcare system. Neural Comput Appl 2021. [DOI: 10.1007/s00521-021-06693-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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Liu G, Han X, Tian L, Zhou W, Liu H. ECG quality assessment based on hand-crafted statistics and deep-learned S-transform spectrogram features. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2021; 208:106269. [PMID: 34298474 DOI: 10.1016/j.cmpb.2021.106269] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2021] [Accepted: 07/01/2021] [Indexed: 06/13/2023]
Abstract
Background and Objective Electrocardiogram (ECG) quality assessment is significant for automatic diagnosis of cardiovascular disease and reducing the massive workload of reviewing continuous ECGs. Hence, how to design an appropriate algorithm for objectively evaluating the multi-lead ECG recordings is particularly important. Despite the deep learning methods performing well in many fields, as a data-driven method, it may not be entirely suitable for ECG analysis due to the difficulty in obtaining sufficient data and the low signal-to-noise ratio of ECG recordings. In this study, with the aim of providing an accurate and automatic ECG quality assessment scheme, we propose an innovative ECG quality assessment algorithm based on hand-crafted statistical features and deep-learned spectral features. Methods In this paper, a novel approach, combining the deep-learned Stockwell transform (S-Transform) spectrogram features and hand-crafted statistical features, is proposed for ECG quality assessment. Firstly, a double-input convolutional neural network (CNN) is established. Then, the S-Transform with a novel online augmentation scheme is performed on the multi-lead raw ECG signal received from one input layer to obtain proper time-frequency representation. After that, the CNN with three convolutional layers is employed to extract robust deep-learned features automatically. Simultaneously, the hand-crafted statistical features, including lead-fall, baseline drift, and R peak features, are calculated and fed into another input layer for feature fusion training. Finally, the deep-learned and hand-crafted features are concatenated and further fused by a fully connected layer for quality classification. Furthermore, a log-odds analysis scheme combining with a gradient-based method can localize the abnormal zone in time, frequency, and spatial domains. Results and Conclusion Our proposed method is evaluated on a publicly available database with 10-fold cross-validation. The experimental results demonstrate that the proposed assessment algorithm reached a mean accuracy of 93.09%, a mean F1-score of 0.8472, and a sensitivity of 0.9767. Moreover, comprehensive experiments indicate that the fusion of CNN features and statistical features has complementary advantages and ideal interpretability, achieving end-to-end multi-lead ECG assessment with satisfying performance.
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Affiliation(s)
- Guoyang Liu
- School of Microelectronics, Shandong University, Jinan 250100, PR China
| | - Xiao Han
- School of Microelectronics, Shandong University, Jinan 250100, PR China; Shandong Artificial Intelligence Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan 250353, PR China
| | - Lan Tian
- School of Microelectronics, Shandong University, Jinan 250100, PR China; Shandong Artificial Intelligence Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan 250353, PR China.
| | - Weidong Zhou
- School of Microelectronics, Shandong University, Jinan 250100, PR China
| | - Hui Liu
- Shandong Artificial Intelligence Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan 250353, PR China
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Seeuws N, De Vos M, Bertrand A. Electrocardiogram Quality Assessment using Unsupervised Deep Learning. IEEE Trans Biomed Eng 2021; 69:882-893. [PMID: 34460362 DOI: 10.1109/tbme.2021.3108621] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
OBJECTIVE Noise and disturbances hinder effective interpretation of recorded ECG. To identify the clean parts of a recording, free from such disturbances, various quality indicators have been developed. Previous instances of these indicators focus on human-defined desirable properties of a clean signal. The reliance on human-specified properties places an inherent limitation on the potential power of signal quality indicators. To move away from this limitation, we propose a data-driven quality indicator. METHODS We use an unsupervised deep learning model, the auto-encoder, to derive the quality indicator. For different quality assessment settings we compare the performance of our quality indicator with traditional indicators. RESULTS The data-driven method performs consistently strong across tasks while performance of the traditional indicators varies strongly from task to task. CONCLUSION This strong performance indicates the potential of data-driven quality indicators for use in ECG processing, removing the reliance on expert-specified desirable properties. SIGNIFICANCE The proposed methodology can easily be extended towards learning quality indicators in other data modalities.
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Xie J, Peng L, Wei L, Gong Y, Zuo F, Wang J, Yin C, Li Y. A signal quality assessment-based ECG waveform delineation method used for wearable monitoring systems. Med Biol Eng Comput 2021; 59:2073-2084. [PMID: 34432182 DOI: 10.1007/s11517-021-02425-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2021] [Accepted: 08/05/2021] [Indexed: 10/20/2022]
Abstract
Identifying transient and nonpersistent abnormal electrocardiogram (ECG) waveforms by continuously monitoring the high-risk populations is of great importance for the diagnosis, treatment, and prevention of cardiovascular diseases. In recent years, fabric electrodes have been widely used in wearable devices because of their non-irritating properties and better comfort than traditional AgCl electrodes. However, the motion noise caused by the relative movement between the fabric electrodes and skin affects the quality of ECGs and reduces the accuracy of diagnosis. Therefore, delineating the ECG waveforms that are recorded from wearable devices with varying levels of noise is still challenging. In this study, a signal quality assessment (SQA)-based ECG waveform delineation method that is used for wearable systems was developed. The ECG signal was first preprocessed by a bandpass filter. Five indices, including the multiscale nonlinear amplitude statistical distribution (adSQI1, adSQI2), the proportion of energy-related to T wave (ptSQI), and heart rates computed from R waves and T waves (rHR and tHR, respectively), were then calculated from the preprocessed ECG signal. The signals were classified as good, acceptable, and unacceptable ECGs by combining these indices through the use of a neural network. Subsequently, the R waves or/and T waves were identified for the corresponding feature interpretations based on the SQA results. ECGs that were recorded from the chest belts from 29 volunteers at different activity statuses were divided into 4-s segments. A total of 7133 manually labeled segments were used to derive (4985 segments) and validate (2148 segments) the algorithm. The adSQI1, adSQI2, tHR, and rHR characteristics were significantly different among the good, acceptable, and unacceptable ECGs. The ptSQI value was considerably higher in the good ECGs than in the acceptable and unacceptable ECGs. The ECG segments of different quality levels were classified with an accuracy of 96.74% by using the proposed SQA method. The R waves and T waves were identified with accuracies of 99.95% and 99.57%, respectively, for segments that were classified as acceptable and/or good. The SQA-based ECG waveform delineation method can perform reliable analysis and has the potential to be applied in wearable ECG systems for the early diagnosis and prevention of cardiovascular diseases.
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Affiliation(s)
- Jialing Xie
- Department of Biomedical Engineering and Imaging Medicine, Army Medical University, 30 Gaotanyan Main Street, Chongqing, 400038, China
| | - Li Peng
- Department of Biomedical Engineering and Imaging Medicine, Army Medical University, 30 Gaotanyan Main Street, Chongqing, 400038, China
| | - Liang Wei
- Department of Biomedical Engineering and Imaging Medicine, Army Medical University, 30 Gaotanyan Main Street, Chongqing, 400038, China
| | - Yushun Gong
- Department of Biomedical Engineering and Imaging Medicine, Army Medical University, 30 Gaotanyan Main Street, Chongqing, 400038, China
| | - Feng Zuo
- Department of Information Technology, Southwest Hospital, Army Medical University, Chongqing, 400038, China
| | - Juan Wang
- Department of Emergency, Southwest Hospital, Army Medical University, Chongqing, 400038, China
| | - Changlin Yin
- Department of Critical Care Medicine, Southwest Hospital, Army Medical University, Chongqing, 400038, China
| | - Yongqin Li
- Department of Biomedical Engineering and Imaging Medicine, Army Medical University, 30 Gaotanyan Main Street, Chongqing, 400038, China.
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Halvaei H, Sörnmo L, Stridh M. Signal Quality Assessment of a Novel ECG Electrode for Motion Artifact Reduction. SENSORS (BASEL, SWITZERLAND) 2021; 21:5548. [PMID: 34450990 PMCID: PMC8402297 DOI: 10.3390/s21165548] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 08/10/2021] [Accepted: 08/15/2021] [Indexed: 12/20/2022]
Abstract
BACKGROUND The presence of noise is problematic in the analysis and interpretation of the ECG, especially in ambulatory monitoring. Restricting the analysis to high-quality signal segments only comes with the risk of excluding significant arrhythmia episodes. Therefore, the development of novel electrode technology, robust to noise, continues to be warranted. METHODS The signal quality of a novel wet ECG electrode (Piotrode) is assessed and compared to a commercially available, commonly used electrode (Ambu). The assessment involves indices of QRS detection and atrial fibrillation detection performance, as well as signal quality indices (ensemble standard deviation and time-frequency repeatability), computed from ECGs recorded simultaneously from 20 healthy subjects performing everyday activities. RESULTS The QRS detection performance using the Piotrode was considerably better than when using the Ambu, especially for running but also for lighter activities. The two signal quality indices demonstrated similar trends: the gap in quality became increasingly larger as the subjects became increasingly more active. CONCLUSIONS The novel wet ECG electrode produces signals with less motion artifacts, thereby offering the potential to reduce the review burden, and accordingly the cost, associated with ambulatory monitoring.
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Affiliation(s)
- Hesam Halvaei
- Department of Biomedical Engineering, Lund University, SE-22100 Lund, Sweden;
| | - Leif Sörnmo
- Department of Biomedical Engineering, Lund University, SE-22100 Lund, Sweden;
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Li G, Tan Z, Xu W, Xu F, Wang L, Chen J, Wu K. A particle swarm optimization improved BP neural network intelligent model for electrocardiogram classification. BMC Med Inform Decis Mak 2021; 21:99. [PMID: 34330266 PMCID: PMC8322832 DOI: 10.1186/s12911-021-01453-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2021] [Accepted: 02/22/2021] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND As proven to reflect the work state of heart and physiological situation objectively, electrocardiogram (ECG) is widely used in the assessment of human health, especially the diagnosis of heart disease. The accuracy and reliability of abnormal ECG (AECG) decision depend to a large extent on the feature extraction. However, it is often uneasy or even impossible to obtain accurate features, as the detection process of ECG is easily disturbed by the external environment. And AECG got many species and great variation. What's more, the ECG result obtained after a long time past, which can not reach the purpose of early warning or real-time disease diagnosis. Therefore, developing an intelligent classification model with an accurate feature extraction method to identify AECG is of quite significance. This study aimed to explore an accurate feature extraction method of ECG and establish a suitable model for identifying AECG and the diagnosis of heart disease. METHODS In this research, the wavelet combined with four operations and adaptive threshold methods were applied to filter the ECG and extract its feature waves first. Then, a BP neural network (BPNN) intelligent model and a particle swarm optimization (PSO) improved BPNN (PSO-BPNN) intelligent model based on MIT-BIH open database was established to identify ECG. To reduce the complexity of the model, the principal component analysis (PCA) was used to minimize the feature dimension. RESULTS Wavelet transforms combined four operations and adaptive threshold methods were capable of ECG filtering and feature extraction. PCA can significantly deduce the modeling feature dimension to minimize the complexity and save classification time. The PSO-BPNN intelligent model was suitable for identifying five types of ECG and showed better effects while comparing it with the BPNN model. CONCLUSION In summary, it was further concluded that the PSO-BPNN intelligent model would be a suitable way to identify AECG and provide a tool for the diagnosis of heart disease.
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Affiliation(s)
- Guixiang Li
- National Engineering Research Center for Healthcare Devices, Guangdong Key Lab of Medical Electronic Instruments and Polymer Material Products, Guangdong Institute of Medical Instruments, Institute of Medicine and Health, Guangdong Academy of Sciences, Guangzhou, 510500, China.,Guangdong Engineering Technology Research Center for Diagnosis and Rehabilitation of Dementia, Guangzhou, 510500, China
| | - Zhongwei Tan
- National Engineering Research Center for Healthcare Devices, Guangdong Key Lab of Medical Electronic Instruments and Polymer Material Products, Guangdong Institute of Medical Instruments, Institute of Medicine and Health, Guangdong Academy of Sciences, Guangzhou, 510500, China
| | - Weikang Xu
- National Engineering Research Center for Healthcare Devices, Guangdong Key Lab of Medical Electronic Instruments and Polymer Material Products, Guangdong Institute of Medical Instruments, Institute of Medicine and Health, Guangdong Academy of Sciences, Guangzhou, 510500, China
| | - Fei Xu
- National Engineering Research Center for Healthcare Devices, Guangdong Key Lab of Medical Electronic Instruments and Polymer Material Products, Guangdong Institute of Medical Instruments, Institute of Medicine and Health, Guangdong Academy of Sciences, Guangzhou, 510500, China
| | - Lei Wang
- Department of Artificial Intelligence, College of Information and Communication Engineering, Hainan University, Haikou, 570228, China.
| | - Jun Chen
- National Engineering Research Center for Healthcare Devices, Guangdong Key Lab of Medical Electronic Instruments and Polymer Material Products, Guangdong Institute of Medical Instruments, Institute of Medicine and Health, Guangdong Academy of Sciences, Guangzhou, 510500, China. .,Guangdong Engineering Technology Research Center for Diagnosis and Rehabilitation of Dementia, Guangzhou, 510500, China.
| | - Kai Wu
- Department of Biomedical Engineering, School of Material Science and Engineering, South China University of Technology, Guangzhou, 510006, China. .,Guangdong Engineering Technology Research Center for Diagnosis and Rehabilitation of Dementia, Guangzhou, 510500, China. .,Guangdong Engineering Technology Research Center for Translational Medicine of Mental Disorders, Guangzhou, 510370, China. .,The Affiliated Brain Hospital of Guangzhou Medical University, Guangzhou Huiai Hospital, Guangzhou, 510370, China. .,National Engineering Research Center for Tissue Restoration and Reconstruction, South China University of Technology, Guangzhou, 510006, China. .,Key Laboratory of Biomedical Engineering of Guangdong Province, South China University of Technology, Guangzhou, 510006, China. .,Department of Nuclear Medicine and Radiology, Institute of Development, Aging and Cancer, Tohoku University, Sendai, 980-8575, Japan.
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Zhuang J, Sun J, Yuan G. Arrhythmia diagnosis of young martial arts athletes based on deep learning for smart medical care. Neural Comput Appl 2021. [DOI: 10.1007/s00521-021-06159-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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39
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Motion artifact synthesis for research in biomedical signal quality analysis. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102611] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Tziortziotis I, Laskaratos FM, Coda S. Role of Artificial Intelligence in Video Capsule Endoscopy. Diagnostics (Basel) 2021; 11:1192. [PMID: 34209029 PMCID: PMC8303156 DOI: 10.3390/diagnostics11071192] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2021] [Accepted: 06/28/2021] [Indexed: 02/06/2023] Open
Abstract
Capsule endoscopy (CE) has been increasingly utilised in recent years as a minimally invasive tool to investigate the whole gastrointestinal (GI) tract and a range of capsules are currently available for evaluation of upper GI, small bowel, and lower GI pathology. Although CE is undoubtedly an invaluable test for the investigation of small bowel pathology, it presents considerable challenges and limitations, such as long and laborious reading times, risk of missing lesions, lack of bowel cleansing score and lack of locomotion. Artificial intelligence (AI) seems to be a promising tool that may help improve the performance metrics of CE, and consequently translate to better patient care. In the last decade, significant progress has been made to apply AI in the field of endoscopy, including CE. Although it is certain that AI will find soon its place in day-to-day endoscopy clinical practice, there are still some open questions and barriers limiting its widespread application. In this review, we provide some general information about AI, and outline recent advances in AI and CE, issues around implementation of AI in medical practice and potential future applications of AI-aided CE.
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Affiliation(s)
- Ioannis Tziortziotis
- Endoscopy Unit, Digestive Diseases Centre, Queen's Hospital, Barking Havering and Redbridge University Hospitals NHS Trust, Rom Valley Way, Romford, London RM7 0AG, UK
| | - Faidon-Marios Laskaratos
- Endoscopy Unit, Digestive Diseases Centre, Queen's Hospital, Barking Havering and Redbridge University Hospitals NHS Trust, Rom Valley Way, Romford, London RM7 0AG, UK
| | - Sergio Coda
- Endoscopy Unit, Digestive Diseases Centre, Queen's Hospital, Barking Havering and Redbridge University Hospitals NHS Trust, Rom Valley Way, Romford, London RM7 0AG, UK
- Photonics Group-Department of Physics, Imperial College London, Exhibition Rd, South Kensington, London SW7 2BX, UK
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Dalboni da Rocha JL, Coutinho G, Bramati I, Moll FT, Sitaram R. Multilevel diffusion tensor imaging classification technique for characterizing neurobehavioral disorders. Brain Imaging Behav 2021; 14:641-652. [PMID: 30519999 DOI: 10.1007/s11682-018-0002-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
This proposed novel method consists of three levels of analyses of diffusion tensor imaging data: 1) voxel level analysis of fractional anisotropy of white matter tracks, 2) connection level analysis, based on fiber tracks between specific brain regions, and 3) network level analysis, based connections among multiple brain regions. Machine-learning techniques of (Fisher score) feature selection, (Support Vector Machine) pattern classification, and (Leave-one-out) cross-validation are performed, for recognition of the neural connectivity patterns for diagnostic purposes. For validation proposes, this multilevel approach achieved an average classification accuracy of 90% between Alzheimer's disease and healthy controls, 83% between Alzheimer's disease and mild cognitive impairment, and 83% between mild cognitive impairment and healthy controls. The results indicate that the multilevel diffusion tensor imaging approach used in this analysis is a potential diagnostic tool for clinical evaluations of brain disorders. The presented pipeline is now available as a tool for scientifically applications in a broad range of studies from both clinical and behavioral spectrum, which includes studies about autism, dyslexia, schizophrenia, dementia, motor body performance, among others.
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Affiliation(s)
- Josué Luiz Dalboni da Rocha
- Brain and Language Lab, Department of Clinical Neuroscience, University of Geneva, Geneva, Switzerland.,Department of Biomedical Engineering, University of Florida, Gainesville, USA
| | - Gabriel Coutinho
- D'Or Institute for Research and Education, Rio de Janeiro, Brazil
| | - Ivanei Bramati
- D'Or Institute for Research and Education, Rio de Janeiro, Brazil
| | - Fernanda Tovar Moll
- D'Or Institute for Research and Education, Rio de Janeiro, Brazil.,Federal Univerisity of Rio de Janeiro, Rio de Janeiro, Brazil
| | - Ranganatha Sitaram
- Institute for Biological and Medical Engineering, Schools of Engineering, Biology and Medicine, Pontificia Universidad Católica de Chile, Santiago, Chile. .,Department of Psychiatry and Section of Neuroscience, School of Medicine, Pontificia Universidad Católica de Chile, Santiago, Chile. .,Laboratory for Brain-Machine Interfaces and Neuromodulation, Pontificia Universidad Católica de Chile, Santiago, Chile.
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Fu F, Xiang W, An Y, Liu B, Chen X, Zhu S, Li J. Comparison of Machine Learning Algorithms for the Quality Assessment of Wearable ECG Signals Via Lenovo H3 Devices. J Med Biol Eng 2021. [DOI: 10.1007/s40846-020-00588-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
Abstract
Purpose
Electrocardiogram (ECG) signals collected from wearable devices are easily corrupted with surrounding noise and artefacts, where the signal-to-noise ratio (SNR) of wearable ECG signals is significantly lower than that from hospital ECG machines. To meet the requirements for monitoring heart disease via wearable devices, eliminating useless or poor-quality ECG signals (e.g., lead-falls and low SNRs) can be solved by signal quality assessment algorithms.
Methods
To compensate for the deficiency of the existing ECG quality assessment system, a wearable ECG signal dataset from heart disease patients collected by Lenovo H3 devices was constructed. Then, this paper compares the performance of three machine learning algorithms, i.e., the traditional support vector machine (SVM), least-squares SVM (LS-SVM) and long short-term memory (LSTM) algorithms. Different non-morphological signal quality indices (i.e., the approximate entropy (ApEn), sample entropy (SaEn), fuzzy measure entropy (FMEn), Hurst exponent (HE), kurtosis (K) and power spectral density (PSD) features) extracted from the original ECG signals are fed into the three algorithms as input.
Results
The true positive rate, true negative rate, sensitivity and accuracy are used to evaluate the performance of each method, and the LSTM algorithm achieves the best results on these metrics (97.14%, 86.8%, 97.46% and 95.47%, respectively).
Conclusions
Among the three algorithms, the LSTM-based quality assessment method is the most suitable for the signals collected by the Lenovo H3 devices. The results also show that the combination of statistical features can effectively evaluate the quality of ECG signals.
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Sadiq I, Perez-Alday EA, Shah AJ, Clifford GD. Breathing rate and heart rate as confounding factors in measuring T wave alternans and morphological variability in ECG. Physiol Meas 2021; 42:015002. [PMID: 33296886 PMCID: PMC9201765 DOI: 10.1088/1361-6579/abd237] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
OBJECTIVE High morphological variability magnitude (MVM) and microvolt T wave alternans (TWA) within an electrocardiogram (ECG) signifies increased electrical instability and risk of sudden cardiac death. However, the influence of breathing rate (BR), heart rate (HR), and signal-to-noise ratio (SNR) is unknown and may inflate measured values. APPROACH We synthesize ECGs with morphologies derived from the Physikalisch-Technische Bundesanstalt Database. We calculate MVM and TWA at varying BRs, HRs and SNRs. We compare the MVM and TWA of signal with versus without breathing at varying HRs and SNRs. We then quantify the percentage of MVM and TWA estimates affected by BR and HR in a healthy population and assess the effect of removing these affected estimates on a method for classifying individuals with and without post-traumatic stress disorder (PTSD). MAIN RESULTS For signals with high SNR (>15 dB), MVM is significantly increased when BRs are > 9 respirations/minute (rpm) and HRs are < 100 beats/minute (bpm). Increased TWAs are detected for HR/BR pairs of 60/15, 60/30 and 120/30 bpm/rpm. For 18 healthy participants, 8.33% of TWA windows and 66.76% of MVM windows are affected by BR and HR. On average, the number of windows with TWA elevations > 47 μV decreases by 23% after excluding regions with significant BR and HR effect. Adding HR and BR to a morphological variability feature increases the classification performance by 6% for individuals with and without PTSD. SIGNIFICANCE Physiological BR and HR significantly increase MVM and TWA , indicating that BR and HR should be considered separately as confounders. The code for this work has been released as part of an open-source toolbox.
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Affiliation(s)
- Ismail Sadiq
- Department of Electrical & Computer Engineering, Georgia Institute of Technology, Atlanta, GA, United States of America
| | - Erick A Perez-Alday
- Department of Biomedical Informatics, Emory University, Atlanta, GA, United States of America
| | - Amit J Shah
- Department of Epidemiology, Rollins School of Public Health, Emory University, Atlanta, GA, United States of America
| | - Gari D Clifford
- Department of Biomedical Informatics, Emory University, Atlanta, GA, United States of America
- Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, United States of America
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Venäläinen MS, Panula VJ, Klén R, Haapakoski JJ, Eskelinen AP, Manninen MJ, Kettunen JS, Puhto AP, Vasara AI, Mäkelä KT, Elo LL. Preoperative Risk Prediction Models for Short-Term Revision and Death After Total Hip Arthroplasty: Data from the Finnish Arthroplasty Register. JB JS Open Access 2021; 6:JBJSOA-D-20-00091. [PMID: 33748644 PMCID: PMC7963508 DOI: 10.2106/jbjs.oa.20.00091] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
Because of the increasing number of total hip arthroplasties (THAs), even a small proportion of complications after the operation can lead to substantial individual difficulties and health-care costs. The aim of this study was to develop simple-to-use risk prediction models to assess the risk of the most common reasons for implant failure to facilitate clinical decision-making and to ensure long-term survival of primary THAs.
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Affiliation(s)
- Mikko S Venäläinen
- Turku Bioscience Centre, University of Turku and Åbo Akademi University, Turku, Finland
| | - Valtteri J Panula
- Department of Orthopaedics and Traumatology, Turku University Hospital and University of Turku, Turku, Finland
| | - Riku Klén
- Turku Bioscience Centre, University of Turku and Åbo Akademi University, Turku, Finland
| | | | | | | | - Jukka S Kettunen
- Department of Orthopaedics and Traumatology, Kuopio University Hospital, Kuopio, Finland
| | - Ari-Pekka Puhto
- Division of Operative Care, Department of Orthopaedic and Trauma Surgery, Oulu University Hospital, Oulu, Finland
| | | | - Keijo T Mäkelä
- Department of Orthopaedics and Traumatology, Turku University Hospital and University of Turku, Turku, Finland
| | - Laura L Elo
- Turku Bioscience Centre, University of Turku and Åbo Akademi University, Turku, Finland.,Helsinki University Hospital, Helsinki, Finland
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Detection of ventricular arrhythmia using hybrid time-frequency-based features and deep neural network. Phys Eng Sci Med 2021; 44:135-145. [PMID: 33417159 DOI: 10.1007/s13246-020-00964-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Accepted: 12/15/2020] [Indexed: 12/24/2022]
Abstract
Sudden cardiac death (SCD) is a major cause of death among patients with heart diseases. It occurs mainly due to ventricular tachyarrhythmia (VTA) which includes ventricular tachycardia (VT) and ventricular fibrillation (VF) conditions. The main challenging task is to predict the VTA condition at a faster rate and timely application of automatic external defibrillator (AED) for saving lives. In this study, a VF/VT classification scheme has been proposed using a deep neural network (DNN) approach using hybrid time-frequency-based features. Two annotated public domain ECG databases (CUDB and VFDB) were used as training, test, and validation of datasets. The main motivation of this study was to implement a deep learning model for the classification of the VF/VT conditions and compared the results with other standard machine learning algorithms. The signal is decomposed with the wavelet transform, empirical mode decomposition (EMD) and variable mode decomposition (VMD) approaches and twenty-four are extracted to form a hybrid model from a window of length 5 s length. The DNN classifier achieved an accuracy (Acc) of 99.2%, sensitivity (Se) of 98.8%, and specificity (Sp) of 99.3% which is comparatively better than the results of the standard classifier. The proposed algorithm can detect VTA conditions accurately, hence could reduce the rate of misinterpretations by human experts and improves the efficiency of cardiac diagnosis by ECG signal analysis.
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Pandey SK, Janghel RR. Automated detection of arrhythmia from electrocardiogram signal based on new convolutional encoded features with bidirectional long short-term memory network classifier. Phys Eng Sci Med 2021; 44:173-182. [PMID: 33405209 DOI: 10.1007/s13246-020-00965-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Accepted: 12/16/2020] [Indexed: 12/12/2022]
Abstract
Early detection of cardiac arrhythmia is needed to reduce mortality. Automatically detecting the cardiac arrhythmias is a very challenging task. In this paper, a new deep convolutional encoded feature (CEF) based on non-linear compression composition is applied to diminish the ECG signal segment size. Bidirectional long short-term memory (BLSTM) network classifier has been proposed to detect arrhythmias from the ECG signal, which is encoded by the convolutional encoder. These encoded features are used as the input to BLSTM network classifier. For performance comparison, three other classifiers, namely unidirectional long short-term memory (ULSTM) network, gated recurrent Unit (GRU) and multilayer perceptron, are designed. The experimental studies detect and classify arrhythmias present in the MIT-BIH arrhythmia database into five different heartbeat classes. These heartbeat classes are normal (N), left bundle branch block (L), right bundle branch block(R), paced (P) and premature ventricular contraction (V). Evaluation of performance and system efficiency has been done with the help of four different types of evaluation criteria which are overall accuracy, precision, recall, and F-score. The experimental results indicate that the BLSTM network has achieved an overall accuracy of 99.52% with the processing time of only 6.043 s.
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Affiliation(s)
- Saroj Kumar Pandey
- Department of Information Technology, National Institute of Technology, Raipur, India.
| | - Rekh Ram Janghel
- Department of Information Technology, National Institute of Technology, Raipur, India
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Hurley NC, Spatz ES, Krumholz HM, Jafari R, Mortazavi BJ. A Survey of Challenges and Opportunities in Sensing and Analytics for Risk Factors of Cardiovascular Disorders. ACM TRANSACTIONS ON COMPUTING FOR HEALTHCARE 2021; 2:9. [PMID: 34337602 PMCID: PMC8320445 DOI: 10.1145/3417958] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Accepted: 08/01/2020] [Indexed: 10/22/2022]
Abstract
Cardiovascular disorders cause nearly one in three deaths in the United States. Short- and long-term care for these disorders is often determined in short-term settings. However, these decisions are made with minimal longitudinal and long-term data. To overcome this bias towards data from acute care settings, improved longitudinal monitoring for cardiovascular patients is needed. Longitudinal monitoring provides a more comprehensive picture of patient health, allowing for informed decision making. This work surveys sensing and machine learning in the field of remote health monitoring for cardiovascular disorders. We highlight three needs in the design of new smart health technologies: (1) need for sensing technologies that track longitudinal trends of the cardiovascular disorder despite infrequent, noisy, or missing data measurements; (2) need for new analytic techniques designed in a longitudinal, continual fashion to aid in the development of new risk prediction techniques and in tracking disease progression; and (3) need for personalized and interpretable machine learning techniques, allowing for advancements in clinical decision making. We highlight these needs based upon the current state of the art in smart health technologies and analytics. We then discuss opportunities in addressing these needs for development of smart health technologies for the field of cardiovascular disorders and care.
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Yildirim O, Talo M, Ciaccio EJ, Tan RS, Acharya UR. Accurate deep neural network model to detect cardiac arrhythmia on more than 10,000 individual subject ECG records. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2020; 197:105740. [PMID: 32932129 PMCID: PMC7477611 DOI: 10.1016/j.cmpb.2020.105740] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2020] [Accepted: 08/31/2020] [Indexed: 05/04/2023]
Abstract
BACKGROUND AND OBJECTIVE Cardiac arrhythmia, which is an abnormal heart rhythm, is a common clinical problem in cardiology. Detection of arrhythmia on an extended duration electrocardiogram (ECG) is done based on initial algorithmic software screening, with final visual validation by cardiologists. It is a time consuming and subjective process. Therefore, fully automated computer-assisted detection systems with a high degree of accuracy have an essential role in this task. In this study, we proposed an effective deep neural network (DNN) model to detect different rhythm classes from a new ECG database. METHODS Our DNN model was designed for high performance on all ECG leads. The proposed model, which included both representation learning and sequence learning tasks, showed promising results on all 12-lead inputs. Convolutional layers and sub-sampling layers were used in the representation learning phase. The sequence learning part involved a long short-term memory (LSTM) unit after representation of learning layers. RESULTS We performed two different class scenarios, including reduced rhythms (seven rhythm types) and merged rhythms (four rhythm types) according to the records from the database. Our trained DNN model achieved 92.24% and 96.13% accuracies for the reduced and merged rhythm classes, respectively. CONCLUSION Recently, deep learning algorithms have been found to be useful because of their high performance. The main challenge is the scarcity of appropriate training and testing resources because model performance is dependent on the quality and quantity of case samples. In this study, we used a new public arrhythmia database comprising more than 10,000 records. We constructed an efficient DNN model for automated detection of arrhythmia using these records.
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Affiliation(s)
- Ozal Yildirim
- Department of Computer Engineering, Munzur University, Tunceli,62000, Turkey
| | - Muhammed Talo
- Department of Software Engineering, Firat University, Elazig, Turkey
| | - Edward J Ciaccio
- Department of Medicine, Division of Cardiology, Columbia University Medical Center, New York, NY 10032, USA
| | - Ru San Tan
- National Heart Centre Singapore, Singapore; Duke-NUS Medical School, Singapore
| | - U Rajendra Acharya
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore; Department of Bioinformatics and Medical Engineering, Asia University, Taichung, Taiwan; School of Management and Enterprise University of Southern Queensland, Springfield, Australia.
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Gabrieli G, Balagtas JPM, Esposito G, Setoh P. A Machine Learning Approach for the Automatic Estimation of Fixation-Time Data Signals' Quality. SENSORS (BASEL, SWITZERLAND) 2020; 20:E6775. [PMID: 33260851 PMCID: PMC7731361 DOI: 10.3390/s20236775] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/26/2020] [Revised: 11/19/2020] [Accepted: 11/23/2020] [Indexed: 12/02/2022]
Abstract
Fixation time measures have been widely adopted in studies with infants and young children because they can successfully tap on their meaningful nonverbal behaviors. While recording preverbal children's behavior is relatively simple, analysis of collected signals requires extensive manual preprocessing. In this paper, we investigate the possibility of using different Machine Learning (ML)-a Linear SVC, a Non-Linear SVC, and K-Neighbors-classifiers to automatically discriminate between Usable and Unusable eye fixation recordings. Results of our models show an accuracy of up to the 80%, suggesting that ML tools can help human researchers during the preprocessing and labelling phase of collected data.
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Affiliation(s)
- Giulio Gabrieli
- Psychology Program, School of Social Sciences, Nanyang Technological University, Singapore 639818, Singapore; (G.G.); (J.P.M.B.); (G.E.)
| | - Jan Paolo Macapinlac Balagtas
- Psychology Program, School of Social Sciences, Nanyang Technological University, Singapore 639818, Singapore; (G.G.); (J.P.M.B.); (G.E.)
| | - Gianluca Esposito
- Psychology Program, School of Social Sciences, Nanyang Technological University, Singapore 639818, Singapore; (G.G.); (J.P.M.B.); (G.E.)
- Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore 636921, Singapore
- Department of Psychology and Cognitive Science, University of Trento, 38068 Rovereto, Italy
| | - Peipei Setoh
- Psychology Program, School of Social Sciences, Nanyang Technological University, Singapore 639818, Singapore; (G.G.); (J.P.M.B.); (G.E.)
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50
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van de Leur RR, Boonstra MJ, Bagheri A, Roudijk RW, Sammani A, Taha K, Doevendans PA, van der Harst P, van Dam PM, Hassink RJ, van Es R, Asselbergs FW. Big Data and Artificial Intelligence: Opportunities and Threats in Electrophysiology. Arrhythm Electrophysiol Rev 2020; 9:146-154. [PMID: 33240510 PMCID: PMC7675143 DOI: 10.15420/aer.2020.26] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/08/2020] [Accepted: 08/03/2020] [Indexed: 12/23/2022] Open
Abstract
The combination of big data and artificial intelligence (AI) is having an increasing impact on the field of electrophysiology. Algorithms are created to improve the automated diagnosis of clinical ECGs or ambulatory rhythm devices. Furthermore, the use of AI during invasive electrophysiological studies or combining several diagnostic modalities into AI algorithms to aid diagnostics are being investigated. However, the clinical performance and applicability of created algorithms are yet unknown. In this narrative review, opportunities and threats of AI in the field of electrophysiology are described, mainly focusing on ECGs. Current opportunities are discussed with their potential clinical benefits as well as the challenges. Challenges in data acquisition, model performance, (external) validity, clinical implementation, algorithm interpretation as well as the ethical aspects of AI research are discussed. This article aims to guide clinicians in the evaluation of new AI applications for electrophysiology before their clinical implementation.
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Affiliation(s)
- Rutger R van de Leur
- Department of Cardiology, Division of Heart and Lungs, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands
| | - Machteld J Boonstra
- Department of Cardiology, Division of Heart and Lungs, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands
| | - Ayoub Bagheri
- Department of Cardiology, Division of Heart and Lungs, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands
- Department of Methodology and Statistics, Utrecht University, Utrecht, the Netherlands
| | - Rob W Roudijk
- Department of Cardiology, Division of Heart and Lungs, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands
- Netherlands Heart Institute, Utrecht, the Netherlands
| | - Arjan Sammani
- Department of Cardiology, Division of Heart and Lungs, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands
| | - Karim Taha
- Department of Cardiology, Division of Heart and Lungs, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands
- Netherlands Heart Institute, Utrecht, the Netherlands
| | - Pieter Afm Doevendans
- Department of Cardiology, Division of Heart and Lungs, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands
- Netherlands Heart Institute, Utrecht, the Netherlands
- Central Military Hospital Utrecht, Ministerie van Defensie, Utrecht, the Netherlands
| | - Pim van der Harst
- Department of Cardiology, Division of Heart and Lungs, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands
| | - Peter M van Dam
- Department of Cardiology, Division of Heart and Lungs, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands
| | - Rutger J Hassink
- Department of Cardiology, Division of Heart and Lungs, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands
| | - René van Es
- Department of Cardiology, Division of Heart and Lungs, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands
| | - Folkert W Asselbergs
- Department of Cardiology, Division of Heart and Lungs, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands
- Institute of Cardiovascular Science, Faculty of Population Health Sciences, University College London, London, UK
- Health Data Research UK and Institute of Health Informatics, University College London, London, UK
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