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Shah STH, Shah SAH, Khan II, Imran A, Shah SBH, Mehmood A, Qureshi SA, Raza M, Di Terlizzi A, Cavaglià M, Deriu MA. Data-driven classification and explainable-AI in the field of lung imaging. Front Big Data 2024; 7:1393758. [PMID: 39364222 PMCID: PMC11446784 DOI: 10.3389/fdata.2024.1393758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Accepted: 09/03/2024] [Indexed: 10/05/2024] Open
Abstract
Detecting lung diseases in medical images can be quite challenging for radiologists. In some cases, even experienced experts may struggle with accurately diagnosing chest diseases, leading to potential inaccuracies due to complex or unseen biomarkers. This review paper delves into various datasets and machine learning techniques employed in recent research for lung disease classification, focusing on pneumonia analysis using chest X-ray images. We explore conventional machine learning methods, pretrained deep learning models, customized convolutional neural networks (CNNs), and ensemble methods. A comprehensive comparison of different classification approaches is presented, encompassing data acquisition, preprocessing, feature extraction, and classification using machine vision, machine and deep learning, and explainable-AI (XAI). Our analysis highlights the superior performance of transfer learning-based methods using CNNs and ensemble models/features for lung disease classification. In addition, our comprehensive review offers insights for researchers in other medical domains too who utilize radiological images. By providing a thorough overview of various techniques, our work enables the establishment of effective strategies and identification of suitable methods for a wide range of challenges. Currently, beyond traditional evaluation metrics, researchers emphasize the importance of XAI techniques in machine and deep learning models and their applications in classification tasks. This incorporation helps in gaining a deeper understanding of their decision-making processes, leading to improved trust, transparency, and overall clinical decision-making. Our comprehensive review serves as a valuable resource for researchers and practitioners seeking not only to advance the field of lung disease detection using machine learning and XAI but also from other diverse domains.
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Affiliation(s)
- Syed Taimoor Hussain Shah
- PolitoBIOMed Lab, Department of Mechanical and Aerospace Engineering, Politecnico di Torino, Turin, Italy
| | - Syed Adil Hussain Shah
- PolitoBIOMed Lab, Department of Mechanical and Aerospace Engineering, Politecnico di Torino, Turin, Italy
- Department of Research and Development (R&D), GPI SpA, Trento, Italy
| | - Iqra Iqbal Khan
- Department of Computer Science, Bahauddin Zakariya University, Multan, Pakistan
| | - Atif Imran
- College of Electrical and Mechanical Engineering, National University of Sciences and Technology, Rawalpindi, Pakistan
| | - Syed Baqir Hussain Shah
- Department of Computer Science, Commission on Science and Technology for Sustainable Development in the South (COMSATS) University Islamabad (CUI), Wah Campus, Wah, Pakistan
| | - Atif Mehmood
- School of Computer Science and Technology, Zhejiang Normal University, Jinhua, China
- Zhejiang Institute of Photoelectronics & Zhejiang Institute for Advanced Light Source, Zhejiang Normal University, Jinhua, Zhejiang, China
| | - Shahzad Ahmad Qureshi
- Department of Computer and Information Sciences, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad, Pakistan
| | - Mudassar Raza
- Department of Computer Science, Namal University Mianwali, Mianwali, Pakistan
- Department of Computer Science, Heavy Industries Taxila Education City (HITEC), University of Taxila, Taxila, Pakistan
| | | | - Marco Cavaglià
- PolitoBIOMed Lab, Department of Mechanical and Aerospace Engineering, Politecnico di Torino, Turin, Italy
| | - Marco Agostino Deriu
- PolitoBIOMed Lab, Department of Mechanical and Aerospace Engineering, Politecnico di Torino, Turin, Italy
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Rollan-Martinez-Herrera M, Díaz AA, Estépar RSJ, Sanchez-Ferrero GV, Ross JC, Estépar RSJ, Nardelli P. CNNs trained with adult data are useful in pediatrics. A pneumonia classification example. PLoS One 2024; 19:e0306703. [PMID: 39052572 PMCID: PMC11271847 DOI: 10.1371/journal.pone.0306703] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2024] [Accepted: 06/21/2024] [Indexed: 07/27/2024] Open
Abstract
BACKGROUND AND OBJECTIVES The scarcity of data for training deep learning models in pediatrics has prompted questions about the feasibility of employing CNNs trained with adult images for pediatric populations. In this work, a pneumonia classification CNN was used as an exploratory example to showcase the adaptability and efficacy of such models in pediatric healthcare settings despite the inherent data constraints. METHODS To develop a curated training dataset with reduced biases, 46,947 chest X-ray images from various adult datasets were meticulously selected. Two preprocessing approaches were tried to assess the impact of thoracic segmentation on model attention outside the thoracic area. Evaluation of our approach was carried out on a dataset containing 5,856 chest X-rays of children from 1 to 5 years old. RESULTS An analysis of attention maps indicated that networks trained with thorax segmentation placed less attention on regions outside the thorax, thus eliminating potential bias. The ensuing network exhibited impressive performance when evaluated on an adult dataset, achieving a pneumonia discrimination AUC of 0.95. When tested on a pediatric dataset, the pneumonia discrimination AUC reached 0.82. CONCLUSIONS The results of this study show that adult-trained CNNs can be effectively applied to pediatric populations. This could potentially shift focus towards validating adult models over pediatric population instead of training new CNNs with limited pediatric data. To ensure the generalizability of deep learning models, it is important to implement techniques aimed at minimizing biases, such as image segmentation or low-quality image exclusion.
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Affiliation(s)
- Maria Rollan-Martinez-Herrera
- Department of Radiology, Applied Chest Imaging Laboratory, Harvard Medical School, Brigham and Women’s Hospital, Boston, Massachusetts, United States of America
| | - Alejandro A. Díaz
- Division of Pulmonary and Critical Care Medicine, Chest Imaging Laboratory, Harvard Medical School, Brigham and Women’s Hospital, Boston, Massachusetts, United States of America
| | - Rubén San José Estépar
- Department of Radiology, Applied Chest Imaging Laboratory, Harvard Medical School, Brigham and Women’s Hospital, Boston, Massachusetts, United States of America
| | - Gonzalo Vegas Sanchez-Ferrero
- Department of Radiology, Applied Chest Imaging Laboratory, Harvard Medical School, Brigham and Women’s Hospital, Boston, Massachusetts, United States of America
| | - James C. Ross
- Department of Radiology, Applied Chest Imaging Laboratory, Harvard Medical School, Brigham and Women’s Hospital, Boston, Massachusetts, United States of America
| | - Raúl San José Estépar
- Department of Radiology, Applied Chest Imaging Laboratory, Harvard Medical School, Brigham and Women’s Hospital, Boston, Massachusetts, United States of America
| | - Pietro Nardelli
- Department of Radiology, Applied Chest Imaging Laboratory, Harvard Medical School, Brigham and Women’s Hospital, Boston, Massachusetts, United States of America
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Kanwal K, Asif M, Khalid SG, Liu H, Qurashi AG, Abdullah S. Current Diagnostic Techniques for Pneumonia: A Scoping Review. SENSORS (BASEL, SWITZERLAND) 2024; 24:4291. [PMID: 39001069 PMCID: PMC11244398 DOI: 10.3390/s24134291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/29/2024] [Revised: 06/22/2024] [Accepted: 06/28/2024] [Indexed: 07/16/2024]
Abstract
Community-acquired pneumonia is one of the most lethal infectious diseases, especially for infants and the elderly. Given the variety of causative agents, the accurate early detection of pneumonia is an active research area. To the best of our knowledge, scoping reviews on diagnostic techniques for pneumonia are lacking. In this scoping review, three major electronic databases were searched and the resulting research was screened. We categorized these diagnostic techniques into four classes (i.e., lab-based methods, imaging-based techniques, acoustic-based techniques, and physiological-measurement-based techniques) and summarized their recent applications. Major research has been skewed towards imaging-based techniques, especially after COVID-19. Currently, chest X-rays and blood tests are the most common tools in the clinical setting to establish a diagnosis; however, there is a need to look for safe, non-invasive, and more rapid techniques for diagnosis. Recently, some non-invasive techniques based on wearable sensors achieved reasonable diagnostic accuracy that could open a new chapter for future applications. Consequently, further research and technology development are still needed for pneumonia diagnosis using non-invasive physiological parameters to attain a better point of care for pneumonia patients.
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Affiliation(s)
- Kehkashan Kanwal
- College of Speech, Language, and Hearing Sciences, Ziauddin University, Karachi 75000, Pakistan
| | - Muhammad Asif
- Faculty of Computing and Applied Sciences, Sir Syed University of Engineering and Technology, Karachi 75300, Pakistan
| | - Syed Ghufran Khalid
- Department of Engineering, Faculty of Science and Technology, Nottingham Trent University, Nottingham B15 3TN, UK
| | - Haipeng Liu
- Research Centre for Intelligent Healthcare, Coventry University, Coventry CV1 5FB, UK
| | | | - Saad Abdullah
- School of Innovation, Design and Engineering, Mälardalen University, 721 23 Västerås, Sweden
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Khor W, Chen YK, Roberts M, Ciampa F. Automated detection and classification of concealed objects using infrared thermography and convolutional neural networks. Sci Rep 2024; 14:8353. [PMID: 38594274 PMCID: PMC11004154 DOI: 10.1038/s41598-024-56636-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Accepted: 03/08/2024] [Indexed: 04/11/2024] Open
Abstract
This paper presents a study on the effectiveness of a convolutional neural network (CNN) in classifying infrared images for security scanning. Infrared thermography was explored as a non-invasive security scanner for stand-off and walk-through concealed object detection. Heat generated by human subjects radiates off the clothing surface, allowing detection by an infrared camera. However, infrared lacks in penetration capability compared to longer electromagnetic waves, leading to less obvious visuals on the clothing surface. ResNet-50 was used as the CNN model to automate the classification process of thermal images. The ImageNet database was used to pre-train the model, which was further fine-tuned using infrared images obtained from experiments. Four image pre-processing approaches were explored, i.e., raw infrared image, subject cropped region-of-interest (ROI) image, K-means, and Fuzzy-c clustered images. All these approaches were evaluated using the receiver operating characteristic curve on an internal holdout set, with an area-under-the-curve of 0.8923, 0.9256, 0.9485, and 0.9669 for the raw image, ROI cropped, K-means, and Fuzzy-c models, respectively. The CNN models trained using various image pre-processing approaches suggest that the prediction performance can be improved by the removal of non-decision relevant information and the visual highlighting of features.
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Affiliation(s)
- WeeLiam Khor
- Department of Mechanical Engineering Sciences, University of Surrey, Guildford, GU2 7XH, UK
- Department of Technology, Design and Environment, Oxford Brookes University, Wheatley, OX33 1HX, UK
| | - Yichen Kelly Chen
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Wilberforce Road, Cambridge, CB3 0WA, UK
| | - Michael Roberts
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Wilberforce Road, Cambridge, CB3 0WA, UK
- Department of Medicine, University of Cambridge, Hills Road, Cambridge, CB2 2QQ, UK
| | - Francesco Ciampa
- Department of Mechanical Engineering Sciences, University of Surrey, Guildford, GU2 7XH, UK.
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Kyung S, Jang M, Park S, Yoon HM, Hong GS, Kim N. Supervised representation learning based on various levels of pediatric radiographic views for transfer learning. Sci Rep 2024; 14:7551. [PMID: 38555414 PMCID: PMC10981659 DOI: 10.1038/s41598-024-58163-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Accepted: 03/26/2024] [Indexed: 04/02/2024] Open
Abstract
Transfer learning plays a pivotal role in addressing the paucity of data, expediting training processes, and enhancing model performance. Nonetheless, the prevailing practice of transfer learning predominantly relies on pre-trained models designed for the natural image domain, which may not be well-suited for the medical image domain in grayscale. Recognizing the significance of leveraging transfer learning in medical research, we undertook the construction of class-balanced pediatric radiograph datasets collectively referred to as PedXnets, grounded in radiographic views using the pediatric radiographs collected over 24 years at Asan Medical Center. For PedXnets pre-training, approximately 70,000 X-ray images were utilized. Three different pre-training weights of PedXnet were constructed using Inception V3 for various radiation perspective classifications: Model-PedXnet-7C, Model-PedXnet-30C, and Model-PedXnet-68C. We validated the transferability and positive effects of transfer learning of PedXnets through pediatric downstream tasks including fracture classification and bone age assessment (BAA). The evaluation of transfer learning effects through classification and regression metrics showed superior performance of Model-PedXnets in quantitative assessments. Additionally, visual analyses confirmed that the Model-PedXnets were more focused on meaningful regions of interest.
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Affiliation(s)
- Sunggu Kyung
- Department of Biomedical Engineering, Asan Medical Institute of Convergence Science and Technology, Asan Medical Center, College of Medicine, University of Ulsan, Seoul, Republic of Korea
| | - Miso Jang
- Department of Convergence Medicine, Asan Medical Center, University of Ulsan College of Medicine, 88 Olympic-Ro 43-Gil, Songpa-gu, Seoul, 05505, Republic of Korea
| | - Seungju Park
- Department of Convergence Medicine, Asan Medical Center, University of Ulsan College of Medicine, 88 Olympic-Ro 43-Gil, Songpa-gu, Seoul, 05505, Republic of Korea
| | - Hee Mang Yoon
- Department of Radiology and Research Institute of Radiology, Asan Medical Center, University of Ulsan College of Medicine, 88 Olympic-Ro 43-Gil, Songpa-gu, Seoul, 05505, Republic of Korea
| | - Gil-Sun Hong
- Department of Radiology and Research Institute of Radiology, Asan Medical Center, University of Ulsan College of Medicine, 88 Olympic-Ro 43-Gil, Songpa-gu, Seoul, 05505, Republic of Korea
| | - Namkug Kim
- Department of Convergence Medicine, Asan Medical Center, University of Ulsan College of Medicine, 88 Olympic-Ro 43-Gil, Songpa-gu, Seoul, 05505, Republic of Korea.
- Department of Radiology and Research Institute of Radiology, Asan Medical Center, University of Ulsan College of Medicine, 88 Olympic-Ro 43-Gil, Songpa-gu, Seoul, 05505, Republic of Korea.
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Yoon T, Kang D. Enhancing pediatric pneumonia diagnosis through masked autoencoders. Sci Rep 2024; 14:6150. [PMID: 38480869 PMCID: PMC10937919 DOI: 10.1038/s41598-024-56819-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2023] [Accepted: 03/11/2024] [Indexed: 03/17/2024] Open
Abstract
Pneumonia, an inflammatory lung condition primarily triggered by bacteria, viruses, or fungi, presents distinctive challenges in pediatric cases due to the unique characteristics of the respiratory system and the potential for rapid deterioration. Timely diagnosis is crucial, particularly in children under 5, who have immature immune systems, making them more susceptible to pneumonia. While chest X-rays are indispensable for diagnosis, challenges arise from subtle radiographic findings, varied clinical presentations, and the subjectivity of interpretations, especially in pediatric cases. Deep learning, particularly transfer learning, has shown promise in improving pneumonia diagnosis by leveraging large labeled datasets. However, the scarcity of labeled data for pediatric chest X-rays presents a hurdle in effective model training. To address this challenge, we explore the potential of self-supervised learning, focusing on the Masked Autoencoder (MAE). By pretraining the MAE model on adult chest X-ray images and fine-tuning the pretrained model on a pediatric pneumonia chest X-ray dataset, we aim to overcome data scarcity issues and enhance diagnostic accuracy for pediatric pneumonia. The proposed approach demonstrated competitive performance an AUC of 0.996 and an accuracy of 95.89% in distinguishing between normal and pneumonia. Additionally, the approach exhibited high AUC values (normal: 0.997, bacterial pneumonia: 0.983, viral pneumonia: 0.956) and an accuracy of 93.86% in classifying normal, bacterial pneumonia, and viral pneumonia. This study also investigated the impact of different masking ratios during pretraining and explored the labeled data efficiency of the MAE model, presenting enhanced diagnostic capabilities for pediatric pneumonia.
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Affiliation(s)
- Taeyoung Yoon
- Department of Healthcare Information Technology, Inje University, 197, Inje-ro, Gimhae-si, 50834, Korea
| | - Daesung Kang
- Department of Healthcare Information Technology, Inje University, 197, Inje-ro, Gimhae-si, 50834, Korea.
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Malik H, Anees T. Multi-modal deep learning methods for classification of chest diseases using different medical imaging and cough sounds. PLoS One 2024; 19:e0296352. [PMID: 38470893 DOI: 10.1371/journal.pone.0296352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2023] [Accepted: 12/11/2023] [Indexed: 03/14/2024] Open
Abstract
Chest disease refers to a wide range of conditions affecting the lungs, such as COVID-19, lung cancer (LC), consolidation lung (COL), and many more. When diagnosing chest disorders medical professionals may be thrown off by the overlapping symptoms (such as fever, cough, sore throat, etc.). Additionally, researchers and medical professionals make use of chest X-rays (CXR), cough sounds, and computed tomography (CT) scans to diagnose chest disorders. The present study aims to classify the nine different conditions of chest disorders, including COVID-19, LC, COL, atelectasis (ATE), tuberculosis (TB), pneumothorax (PNEUTH), edema (EDE), pneumonia (PNEU). Thus, we suggested four novel convolutional neural network (CNN) models that train distinct image-level representations for nine different chest disease classifications by extracting features from images. Furthermore, the proposed CNN employed several new approaches such as a max-pooling layer, batch normalization layers (BANL), dropout, rank-based average pooling (RBAP), and multiple-way data generation (MWDG). The scalogram method is utilized to transform the sounds of coughing into a visual representation. Before beginning to train the model that has been developed, the SMOTE approach is used to calibrate the CXR and CT scans as well as the cough sound images (CSI) of nine different chest disorders. The CXR, CT scan, and CSI used for training and evaluating the proposed model come from 24 publicly available benchmark chest illness datasets. The classification performance of the proposed model is compared with that of seven baseline models, namely Vgg-19, ResNet-101, ResNet-50, DenseNet-121, EfficientNetB0, DenseNet-201, and Inception-V3, in addition to state-of-the-art (SOTA) classifiers. The effectiveness of the proposed model is further demonstrated by the results of the ablation experiments. The proposed model was successful in achieving an accuracy of 99.01%, making it superior to both the baseline models and the SOTA classifiers. As a result, the proposed approach is capable of offering significant support to radiologists and other medical professionals.
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Affiliation(s)
- Hassaan Malik
- Department of Computer Science, School of Systems and Technology, University of Management and Technology, Lahore, Pakistan
| | - Tayyaba Anees
- Department of Software Engineering, School of Systems and Technology, University of Management and Technology, Lahore, Pakistan
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Bal U, Bal A, Moral ÖT, Düzgün F, Gürbüz N. A deep learning feature extraction-based hybrid approach for detecting pediatric pneumonia in chest X-ray images. Phys Eng Sci Med 2024; 47:109-117. [PMID: 37991696 DOI: 10.1007/s13246-023-01347-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2021] [Accepted: 10/12/2023] [Indexed: 11/23/2023]
Abstract
Pneumonia is a disease caused by bacteria, viruses, and fungi that settle in the alveolar sacs of the lungs and can lead to serious health complications in humans. Early detection of pneumonia is necessary for early treatment to manage and cure the disease. Recently, machine learning-based pneumonia detection methods have focused on pneumonia in adults. Machine learning relies on manual feature engineering, whereas deep learning can automatically detect and extract features from data. This study proposes a deep learning feature extraction-based hybrid approach that combines deep learning and machine learning to detect pediatric pneumonia, which is difficult to standardize. The proposed hybrid approach enhances the accuracy of detecting pediatric pneumonia and simplifies the approach by eliminating the requirement for advanced feature extraction. The experiments indicate that the hybrid approach using a Medium Neural Network based on AlexNet feature extraction achieved a 97.9% accuracy rate and 98.0% sensitivity rate. The results show that the proposed approach achieved higher accuracy rates than state-of-the-art approaches.
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Affiliation(s)
- Ufuk Bal
- Osmaniye Korkut Ata University Electrical and Electronics Engineering Department, Osmaniye, Turkey.
| | - Alkan Bal
- Manisa Celal Bayar University Pediatrics Department, Manisa, Turkey
| | - Özge Taylan Moral
- Vocational School of Technical Sciences, Electronics Technology, Istanbul University-Cerrahpasa, Istanbul, Turkey
| | - Fatih Düzgün
- Department of Radiology, Manisa Celal Bayar University, Manisa, Turkey
| | - Nida Gürbüz
- Manisa Celal Bayar University Pediatrics Department, Manisa, Turkey
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Hroub NA, Alsannaa AN, Alowaifeer M, Alfarraj M, Okafor E. Explainable deep learning diagnostic system for prediction of lung disease from medical images. Comput Biol Med 2024; 170:108012. [PMID: 38262202 DOI: 10.1016/j.compbiomed.2024.108012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Revised: 12/26/2023] [Accepted: 01/17/2024] [Indexed: 01/25/2024]
Abstract
Around the globe, respiratory lung diseases pose a severe threat to human survival. Based on a central goal to reduce contiguous transmission from infected to healthy persons, several technologies have evolved for diagnosing lung pathologies. One of the emerging technologies is the utility of Artificial Intelligence (AI) based on computer vision for processing wide varieties of medical imaging but AI methods without explainability are often treated as a black box. Based on a view to demystifying the rationale influencing AI decisions, this paper designed and developed a novel low-cost explainable deep-learning diagnostic tool for predicting lung disease from medical images. For this, we investigated explainable deep learning (DL) models (conventional DL and vision transformers (ViTs)) for performing prediction of the existence of pneumonia, COVID19, or no-disease from both original and data augmentation (DA)-based medical images (from two chest X-ray datasets). The results show that our experimental consideration of the DA that combines the impact of cropping, rotation, and horizontal flipping (CROP+ROT+HF) for transforming input images and then passed as input to an Inception-V3 architecture yielded a performance that surpasses all the ViTs and other conventional DL approaches in most of the evaluated performance metrics. Overall, the results suggest that the utility of data augmentation schemes aided the DL methods to yield higher classification accuracies. Furthermore, we compared five different class activation mapping (CAM) algorithms (GradCAM, GradCAM++, EigenGradCAM, AblationCAM, and RandomCAM). The result shows that most of the examined CAM algorithms were effective in identifying the attention region containing the existence of pneumonia or COVID-19 from the medical images (chest X-rays). Our developed low-cost AI diagnostic tool (pilot system) can assist medical experts and radiographers in proffering early diagnosis of lung disease. For this, we selected five to seven deep learning models and the explainable algorithms were deployed on a novel web interface implemented via a Gradio framework.
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Affiliation(s)
- Nussair Adel Hroub
- SDAIA-KFUPM Joint Research Center for Artificial Intelligence, King Fahd University of Petroleum & Minerals, 31261, Dhahran, Saudi Arabia
| | - Ali Nader Alsannaa
- SDAIA-KFUPM Joint Research Center for Artificial Intelligence, King Fahd University of Petroleum & Minerals, 31261, Dhahran, Saudi Arabia
| | - Maad Alowaifeer
- SDAIA-KFUPM Joint Research Center for Artificial Intelligence, King Fahd University of Petroleum & Minerals, 31261, Dhahran, Saudi Arabia; Electrical Engineering Department, King Fahd University of Petroleum & Minerals, 31261, Dhahran, Saudi Arabia
| | - Motaz Alfarraj
- SDAIA-KFUPM Joint Research Center for Artificial Intelligence, King Fahd University of Petroleum & Minerals, 31261, Dhahran, Saudi Arabia; Electrical Engineering Department, King Fahd University of Petroleum & Minerals, 31261, Dhahran, Saudi Arabia; Information and Computer Science Department, King Fahd University of Petroleum & Minerals, 31261, Dhahran, Saudi Arabia
| | - Emmanuel Okafor
- SDAIA-KFUPM Joint Research Center for Artificial Intelligence, King Fahd University of Petroleum & Minerals, 31261, Dhahran, Saudi Arabia.
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Singh S, Kumar M, Kumar A, Verma BK, Abhishek K, Selvarajan S. Efficient pneumonia detection using Vision Transformers on chest X-rays. Sci Rep 2024; 14:2487. [PMID: 38291130 PMCID: PMC10827725 DOI: 10.1038/s41598-024-52703-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 01/22/2024] [Indexed: 02/01/2024] Open
Abstract
Pneumonia is a widespread and acute respiratory infection that impacts people of all ages. Early detection and treatment of pneumonia are essential for avoiding complications and enhancing clinical results. We can reduce mortality, improve healthcare efficiency, and contribute to the global battle against a disease that has plagued humanity for centuries by devising and deploying effective detection methods. Detecting pneumonia is not only a medical necessity but also a humanitarian imperative and a technological frontier. Chest X-rays are a frequently used imaging modality for diagnosing pneumonia. This paper examines in detail a cutting-edge method for detecting pneumonia implemented on the Vision Transformer (ViT) architecture on a public dataset of chest X-rays available on Kaggle. To acquire global context and spatial relationships from chest X-ray images, the proposed framework deploys the ViT model, which integrates self-attention mechanisms and transformer architecture. According to our experimentation with the proposed Vision Transformer-based framework, it achieves a higher accuracy of 97.61%, sensitivity of 95%, and specificity of 98% in detecting pneumonia from chest X-rays. The ViT model is preferable for capturing global context, comprehending spatial relationships, and processing images that have different resolutions. The framework establishes its efficacy as a robust pneumonia detection solution by surpassing convolutional neural network (CNN) based architectures.
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Affiliation(s)
| | - Manoj Kumar
- JSS Academy of Technical Education, Noida, India
| | - Abhay Kumar
- National Institute of Technology Patna, Patna, India
| | | | | | - Shitharth Selvarajan
- School of Built Environment, Engineering and Computing, Leeds Beckett University, LS1 3HE, Leeds, UK.
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Gan T, Jin Z, Yu L, Liang X, Zhang H, Ye X. Self-supervised representation learning using feature pyramid siamese networks for colorectal polyp detection. Sci Rep 2023; 13:21655. [PMID: 38066207 PMCID: PMC10709402 DOI: 10.1038/s41598-023-49057-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Accepted: 12/04/2023] [Indexed: 12/18/2023] Open
Abstract
Colorectal cancer is a leading cause of cancer-related deaths globally. In recent years, the use of convolutional neural networks in computer-aided diagnosis (CAD) has facilitated simpler detection of early lesions like polyps during real-time colonoscopy. However, the majority of existing techniques require a large training dataset annotated by experienced experts. To alleviate the laborious task of image annotation and utilize the vast amounts of readily available unlabeled colonoscopy data to further improve the polyp detection ability, this study proposed a novel self-supervised representation learning method called feature pyramid siamese networks (FPSiam). First, a feature pyramid encoder module was proposed to effectively extract and fuse both local and global feature representations among colonoscopic images, which is important for dense prediction tasks like polyp detection. Next, a self-supervised visual feature representation containing the general feature of colonoscopic images is learned by the siamese networks. Finally, the feature representation will be transferred to the downstream colorectal polyp detection task. A total of 103 videos (861,400 frames), 100 videos (24,789 frames), and 60 videos (15,397 frames) in the LDPolypVideo dataset are used to pre-train, train, and test the performance of the proposed FPSiam and its counterparts, respectively. The experimental results have illustrated that our FPSiam approach obtains the optimal capability, which is better than that of other state-of-the-art self-supervised learning methods and is also higher than the method based on transfer learning by 2.3 mAP and 3.6 mAP for two typical detectors. In conclusion, FPSiam provides a cost-efficient solution for developing colorectal polyp detection systems, especially in conditions where only a small fraction of the dataset is labeled while the majority remains unlabeled. Besides, it also brings fresh perspectives into other endoscopic image analysis tasks.
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Affiliation(s)
- Tianyuan Gan
- Biosensor National Special Laboratory, College of Biomedical Engineering and Instrument Science, Zhejiang University, Hangzhou, 310027, China
| | - Ziyi Jin
- Biosensor National Special Laboratory, College of Biomedical Engineering and Instrument Science, Zhejiang University, Hangzhou, 310027, China
| | - Liangliang Yu
- Department of Gastroenterology, Endoscopy Center, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, 310016, China
| | - Xiao Liang
- Department of General Surgery, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, 310016, China
| | - Hong Zhang
- Biosensor National Special Laboratory, College of Biomedical Engineering and Instrument Science, Zhejiang University, Hangzhou, 310027, China
| | - Xuesong Ye
- Biosensor National Special Laboratory, College of Biomedical Engineering and Instrument Science, Zhejiang University, Hangzhou, 310027, China.
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12
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Chen X, Yu Q, Peng J, He Z, Li Q, Ning Y, Gu J, Lv F, Jiang H, Xie K. A Combined Model Integrating Radiomics and Deep Learning Based on Contrast-Enhanced CT for Preoperative Staging of Laryngeal Carcinoma. Acad Radiol 2023; 30:3022-3031. [PMID: 37777428 DOI: 10.1016/j.acra.2023.06.029] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 06/18/2023] [Accepted: 06/27/2023] [Indexed: 10/02/2023]
Abstract
RATIONALE AND OBJECTIVES Accurate staging of laryngeal carcinoma can inform appropriate treatment decision-making. We developed a radiomics model, a deep learning (DL) model, and a combined model (incorporating radiomics features and DL features) based on the venous-phase CT images and explored the performance of these models in stratifying patients with laryngeal carcinoma into stage I-II and stage III-IV, and also compared these models with radiologists. MATERIALS AND METHODS Three hundreds and nineteen patients with pathologically confirmed laryngeal carcinoma were randomly divided into a training set (n = 223) and a test set (n = 96). In the training set, the radiomics features with inter- and intraclass correlation coefficients (ICCs)> 0.75 were screened by Spearman correlation analysis and recursive feature elimination (RFE); then support vector machine (SVM) classifier was applied to develop the radiomics model. The DL model was built using ResNet 18 by the cropped 2D regions of interest (ROIs) in the maximum tumor ROI slices and the last fully connected layer of this network served as the DL feature extractor. Finally, a combined model was developed by pooling the radiomics features and extracted DL features to predict the staging. RESULTS The area under the curves (AUCs) for radiomics model, DL model, and combined model in the test set were 0.704 (95% confidence interval [CI]: 0.588-0.820), 0.724 (95% CI: 0.613-0.835), and 0.849 (95% CI: 0.755-0.943), respectively. The combined model outperformed the radiomics model and the DL model in discriminating stage I-II from stage III-IV (p = 0.031 and p = 0.020, respectively). Only the combined model performed significantly better than radiologists (p < 0.050 for both). CONCLUSION The combined model can help tailor the therapeutic strategy for laryngeal carcinoma patients by enabling more accurate preoperative staging.
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Affiliation(s)
- Xinwei Chen
- Department of Radiology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China (X.C., Q.Y., J.P., Z.H., Q.L., Y.N., F.L., H.J., K.X.)
| | - Qiang Yu
- Department of Radiology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China (X.C., Q.Y., J.P., Z.H., Q.L., Y.N., F.L., H.J., K.X.)
| | - Juan Peng
- Department of Radiology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China (X.C., Q.Y., J.P., Z.H., Q.L., Y.N., F.L., H.J., K.X.).
| | - Zhiyang He
- Department of Radiology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China (X.C., Q.Y., J.P., Z.H., Q.L., Y.N., F.L., H.J., K.X.)
| | - Quanjiang Li
- Department of Radiology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China (X.C., Q.Y., J.P., Z.H., Q.L., Y.N., F.L., H.J., K.X.)
| | - Youquan Ning
- Department of Radiology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China (X.C., Q.Y., J.P., Z.H., Q.L., Y.N., F.L., H.J., K.X.)
| | - Jinming Gu
- Department of Radiology, The Third People's Hospital of Chengdu, Chengdu, China (J.G.)
| | - Fajin Lv
- Department of Radiology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China (X.C., Q.Y., J.P., Z.H., Q.L., Y.N., F.L., H.J., K.X.)
| | - Huan Jiang
- Department of Radiology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China (X.C., Q.Y., J.P., Z.H., Q.L., Y.N., F.L., H.J., K.X.)
| | - Kai Xie
- Department of Radiology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China (X.C., Q.Y., J.P., Z.H., Q.L., Y.N., F.L., H.J., K.X.)
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13
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Dong Z, Shen C, Tang J, Wang B, Liao H. Accuracy of Thoracic Ultrasonography for the Diagnosis of Pediatric Pneumonia: A Systematic Review and Meta-Analysis. Diagnostics (Basel) 2023; 13:3457. [PMID: 37998593 PMCID: PMC10670251 DOI: 10.3390/diagnostics13223457] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Revised: 11/05/2023] [Accepted: 11/13/2023] [Indexed: 11/25/2023] Open
Abstract
As an emerging imaging technique, thoracic ultrasonography (TUS) is increasingly utilized in the diagnosis of lung diseases in children and newborns, especially in emergency and critical settings. This systematic review aimed to estimate the diagnostic accuracy of TUS in childhood pneumonia. We searched Embase, PubMed, and Web of Science for studies until July 2023 using both TUS and chest radiography (CR) for the diagnosis of pediatric pneumonia. Two researchers independently screened the literature based on the inclusion and exclusion criteria, collected the results, and assessed the risk of bias using the Diagnostic Accuracy Study Quality Assessment (QUADAS) tool. A total of 26 articles met our inclusion criteria and were included in the final analysis, including 22 prospective studies and four retrospective studies. The StataMP 14.0 software was used for the analysis of the study. The overall pooled sensitivity was 0.95 [95% confidence intervals (CI), 0.92-0.97] and the specificity was 0.94 [95% CI, 0.88-0.97], depicting a good diagnostic accuracy. Our results indicated that TUS was an effective imaging modality for detecting pediatric pneumonia. It is a potential alternative to CXR and a follow-up for pediatric pneumonia due to its simplicity, versatility, low cost, and lack of radiation hazards.
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Affiliation(s)
- Zhenghao Dong
- Department of Thoracic Surgery, West China Hospital, Sichuan University, Chengdu 610041, China; (Z.D.); (C.S.); (B.W.)
| | - Cheng Shen
- Department of Thoracic Surgery, West China Hospital, Sichuan University, Chengdu 610041, China; (Z.D.); (C.S.); (B.W.)
| | - Jinhai Tang
- Department of Radiation Oncology, The First Affiliated Hospital of Dalian Medical University, Dalian 116011, China
| | - Beinuo Wang
- Department of Thoracic Surgery, West China Hospital, Sichuan University, Chengdu 610041, China; (Z.D.); (C.S.); (B.W.)
| | - Hu Liao
- Department of Thoracic Surgery, West China Hospital, Sichuan University, Chengdu 610041, China; (Z.D.); (C.S.); (B.W.)
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14
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Tian C, Zhu H, Meng X, Ma Z, Yuan S, Li W. Research for accurate auxiliary diagnosis of lung cancer based on intracellular fluorescent fingerprint information. JOURNAL OF BIOPHOTONICS 2023; 16:e202300174. [PMID: 37350031 DOI: 10.1002/jbio.202300174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2023] [Revised: 06/09/2023] [Accepted: 06/20/2023] [Indexed: 06/24/2023]
Abstract
The distinctions in pathological types and genetic subtypes of lung cancer have a direct impact on the choice of treatment choices and clinical prognosis in clinical practice. This study used pathological histological sections of surgically removed or biopsied tumor tissue from 36 patients. Based on a small sample size, millions of spectral data points were extracted to investigate the feasibility of employing intracellular fluorescent fingerprint information to diagnose the pathological types and mutational status of lung cancer. The intracellular fluorescent fingerprint information revealed the EGFR gene mutation characteristics in lung cancer, and the area under the curve (AUC) value for the optimal model was 0.98. For the classification of lung cancer pathological types, the macro average AUC value for the ensemble-learning model was 0.97. Our research contributes new idea for pathological diagnosis of lung cancer and offers a quick, easy, and accurate auxiliary diagnostic approach.
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Affiliation(s)
- Chongxuan Tian
- Department of Biomedical Engineering Institute, School of Control Science and Engineering, Shandong University, Jinan, Shandong, China
| | - He Zhu
- Department of Radiation Oncology, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Sciences, Shandong Cancer Hospital Affiliated to Shandong First Medical University, Jinan, Shandong, China
| | - Xiangwei Meng
- Department of Biomedical Engineering Institute, School of Control Science and Engineering, Shandong University, Jinan, Shandong, China
| | - Zhixiang Ma
- Department of Biomedical Engineering Institute, School of Control Science and Engineering, Shandong University, Jinan, Shandong, China
| | - Shuanghu Yuan
- Department of Radiation Oncology, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Sciences, Shandong Cancer Hospital Affiliated to Shandong First Medical University, Jinan, Shandong, China
- Department of Radiation Oncology, Shandong Cancer Hospital Affiliated to Shandong University, Jinan, Shandong, China
- Department of Radiation Oncology, The Affiliated Cancer Hospital of Zhengzhou University, Zhengzhou, Henan, China
| | - Wei Li
- Department of Biomedical Engineering Institute, School of Control Science and Engineering, Shandong University, Jinan, Shandong, China
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15
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Mabrouk A, Díaz Redondo RP, Abd Elaziz M, Kayed M. Ensemble Federated Learning: An approach for collaborative pneumonia diagnosis. Appl Soft Comput 2023; 144:110500. [DOI: 10.1016/j.asoc.2023.110500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
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16
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Zou L, Xu S, Zhu W, Huang X, Lei Z, He K. Improved Generative Adversarial Network for Super-Resolution Reconstruction of Coal Photomicrographs. SENSORS (BASEL, SWITZERLAND) 2023; 23:7296. [PMID: 37631832 PMCID: PMC10459589 DOI: 10.3390/s23167296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 08/18/2023] [Accepted: 08/19/2023] [Indexed: 08/27/2023]
Abstract
Analyzing the photomicrographs of coal and conducting maceral analysis are essential steps in understanding the coal's characteristics, quality, and potential uses. However, due to limitations of equipment and technology, the obtained coal photomicrographs may have low resolution, failing to show clear details. In this study, we introduce a novel Generative Adversarial Network (GAN) to restore high-definition coal photomicrographs. Compared to traditional image restoration methods, the lightweight GAN-based network generates more explicit and realistic results. In particular, we employ the Wide Residual Block to eliminate the influence of artifacts and improve non-linear fitting ability. Moreover, we adopt a multi-scale attention block embedded in the generator network to capture long-range feature correlations across multiple scales. Experimental results on 468 photomicrographs demonstrate that the proposed method achieves a peak signal-to-noise ratio of 31.12 dB and a structural similarity index of 0.906, significantly higher than state-of-the-art super-resolution reconstruction approaches.
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Affiliation(s)
- Liang Zou
- School of Information and Control Engineering, China University of Mining and Technology, Xuzhou 221116, China; (L.Z.); (S.X.); (W.Z.)
| | - Shifan Xu
- School of Information and Control Engineering, China University of Mining and Technology, Xuzhou 221116, China; (L.Z.); (S.X.); (W.Z.)
| | - Weiming Zhu
- School of Information and Control Engineering, China University of Mining and Technology, Xuzhou 221116, China; (L.Z.); (S.X.); (W.Z.)
| | - Xiu Huang
- Research Institute of Petroleum Exploration and Development, Beijing 100083, China;
| | - Zihui Lei
- School of Information and Control Engineering, China University of Mining and Technology, Xuzhou 221116, China; (L.Z.); (S.X.); (W.Z.)
| | - Kun He
- Research Institute of Petroleum Exploration and Development, Beijing 100083, China;
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17
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Ng CKC. Generative Adversarial Network (Generative Artificial Intelligence) in Pediatric Radiology: A Systematic Review. CHILDREN (BASEL, SWITZERLAND) 2023; 10:1372. [PMID: 37628371 PMCID: PMC10453402 DOI: 10.3390/children10081372] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 08/07/2023] [Accepted: 08/09/2023] [Indexed: 08/27/2023]
Abstract
Generative artificial intelligence, especially with regard to the generative adversarial network (GAN), is an important research area in radiology as evidenced by a number of literature reviews on the role of GAN in radiology published in the last few years. However, no review article about GAN in pediatric radiology has been published yet. The purpose of this paper is to systematically review applications of GAN in pediatric radiology, their performances, and methods for their performance evaluation. Electronic databases were used for a literature search on 6 April 2023. Thirty-seven papers met the selection criteria and were included. This review reveals that the GAN can be applied to magnetic resonance imaging, X-ray, computed tomography, ultrasound and positron emission tomography for image translation, segmentation, reconstruction, quality assessment, synthesis and data augmentation, and disease diagnosis. About 80% of the included studies compared their GAN model performances with those of other approaches and indicated that their GAN models outperformed the others by 0.1-158.6%. However, these study findings should be used with caution because of a number of methodological weaknesses. For future GAN studies, more robust methods will be essential for addressing these issues. Otherwise, this would affect the clinical adoption of the GAN-based applications in pediatric radiology and the potential advantages of GAN could not be realized widely.
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Affiliation(s)
- Curtise K. C. Ng
- Curtin Medical School, Curtin University, GPO Box U1987, Perth, WA 6845, Australia; or ; Tel.: +61-8-9266-7314; Fax: +61-8-9266-2377
- Curtin Health Innovation Research Institute (CHIRI), Faculty of Health Sciences, Curtin University, GPO Box U1987, Perth, WA 6845, Australia
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18
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Morcos G, Yi PH, Jeudy J. Applying Artificial Intelligence to Pediatric Chest Imaging: Reliability of Leveraging Adult-Based Artificial Intelligence Models. J Am Coll Radiol 2023; 20:742-747. [PMID: 37467869 DOI: 10.1016/j.jacr.2023.07.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Revised: 07/12/2023] [Accepted: 07/13/2023] [Indexed: 07/21/2023]
Abstract
OBJECTIVE The scarcity of artificial intelligence (AI) applications designed for use in pediatric patients can cause a significant health disparity in this vulnerable population. We investigated the performance of an adult-trained algorithm in detecting pneumonia in a pediatric population to explore the viability of leveraging adult-trained algorithms to accelerate pediatric AI research. METHODS We analyzed a publicly available pediatric chest x-ray dataset using an AI algorithm from TorchXRayVision. A 60% threshold was used to make binary predictions for pneumonia presence. Predictions were compared with dataset labels. Performance measures including true-positive rate, false-positive rate, true-negative rate, false-negative rate, sensitivity, specificity, positive predictive value (PPV), negative predictive value, accuracy, and F1-score were calculated for the complete dataset and bacterial and viral pneumonia subsets. RESULTS Overall (n = 5,856), the algorithm identified 3,923 cases with pneumonia (67.00%) and 1,933 (33.00%) normal cases. In comparison with the actual image labels, there were 3,411 (58.25%) true-positive cases, 512 (8.74%) false-positive cases, 1,071 (18.29%) true-negative cases, and 862 (14.72%) false-negative cases resulting in 79.83% sensitivity, 67.66% specificity, 86.95% PPV, 55.41% negative predictive value, and 76.54% accuracy and an F1-score of 0.83. Although the performance remained consistent in the bacterial pneumonia group, there was a significant decrease in PPV (69.9%) and F1-score (0.74) in the viral pneumonia group. CONCLUSION An adult-trained model adequately detected pneumonia in pediatric patients aged 1 to 5 years. Though models trained exclusively on pediatric images performed better, leveraging adult-based algorithms and datasets can expedite pediatric AI research.
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Affiliation(s)
- George Morcos
- Department of Diagnostic Radiology & Nuclear Medicine, University of Maryland School of Medicine, Baltimore, Maryland. https://twitter.com/gmorcosmd
| | - Paul H Yi
- Department of Diagnostic Radiology & Nuclear Medicine, University of Maryland School of Medicine, Baltimore, Maryland, and University of Maryland Medical Intelligent Imaging Center, Baltimore, Maryland. https://twitter.com/PaulYiMD
| | - Jean Jeudy
- Department of Diagnostic Radiology & Nuclear Medicine, University of Maryland School of Medicine, Baltimore, Maryland, and University of Maryland Medical Intelligent Imaging Center, Baltimore, Maryland.
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19
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Pérez E, Ventura S. Progressive growing of Generative Adversarial Networks for improving data augmentation and skin cancer diagnosis. Artif Intell Med 2023; 141:102556. [PMID: 37295899 DOI: 10.1016/j.artmed.2023.102556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 04/06/2023] [Accepted: 04/14/2023] [Indexed: 06/12/2023]
Abstract
Early melanoma diagnosis is the most important factor in the treatment of skin cancer and can effectively reduce mortality rates. Recently, Generative Adversarial Networks have been used to augment data, prevent overfitting and improve the diagnostic capacity of models. However, its application remains a challenging task due to the high levels of inter and intra-class variance seen in skin images, limited amounts of data, and model instability. We present a more robust Progressive Growing of Adversarial Networks based on residual learning, which is highly recommended to ease the training of deep networks. The stability of the training process was increased by receiving additional inputs from preceding blocks. The architecture is able to produce plausible photorealistic synthetic 512 × 512 skin images, even with small dermoscopic and non-dermoscopic skin image datasets as problem domains. In this manner, we tackle the lack of data and the imbalance problems. Additionally, the proposed approach leverages a skin lesion boundary segmentation algorithm and transfer learning to enhance the diagnosis of melanoma. Inception score and Matthews Correlation Coefficient were used to measure the performance of the models. The architecture was evaluated qualitatively and quantitatively through the use of an extensive experimental study on sixteen datasets, illustrating its effectiveness in the diagnosis of melanoma. Finally, four state-of-the-art data augmentation techniques applied in five convolutional neural network models were significantly outperformed. The results indicated that a bigger number of trainable parameters will not necessarily obtain a better performance in melanoma diagnosis.
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Affiliation(s)
- Eduardo Pérez
- Andalusian Research Institute in Data Science and Computational Intelligence (DaSCI). University of Córdoba, Córdoba, Spain; Maimónides Biomedical Research Institute of Córdoba (IMIBIC). University of Córdoba, Córdoba, Spain
| | - Sebastián Ventura
- Andalusian Research Institute in Data Science and Computational Intelligence (DaSCI). University of Córdoba, Córdoba, Spain; Maimónides Biomedical Research Institute of Córdoba (IMIBIC). University of Córdoba, Córdoba, Spain.
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20
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Wang C, Xu C, Zhang Y, Lu P. Diagnosis of Chest Pneumonia with X-ray Images Based on Graph Reasoning. Diagnostics (Basel) 2023; 13:2125. [PMID: 37371018 PMCID: PMC10297047 DOI: 10.3390/diagnostics13122125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2023] [Revised: 06/09/2023] [Accepted: 06/11/2023] [Indexed: 06/29/2023] Open
Abstract
Pneumonia is an acute respiratory infection that affects the lungs. It is the single largest infectious disease that kills children worldwide. According to a 2019 World Health Organization survey, pneumonia caused 740,180 deaths in children under 5 years of age, accounting for 14% of all deaths in children under 5 years of age but 22% of all deaths in children aged 1 to 5 years. This shows that early recognition of pneumonia in children is particularly important. In this study, we propose a pneumonia binary classification model for chest X-ray image recognition based on a deep learning approach. We extract features using a traditional convolutional network framework to obtain features containing rich semantic information. The adjacency matrix is also constructed to represent the degree of relevance of each region in the image. In the final part of the model, we use graph inference to complete the global modeling to help classify pneumonia disease. A total of 6189 children's X-ray films containing 3319 normal cases and 2870 pneumonia cases were used in the experiment. In total, 20% was selected as the test data set, and 11 common models were compared using 4 evaluation metrics, of which the accuracy rate reached 89.1% and the F1-score reached 90%, achieving the optimum.
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Affiliation(s)
- Cheng Wang
- School of Information and Electronic Engineering, Zhejiang University of Science and Technology, Hangzhou 310023, China; (C.W.); (Y.Z.)
| | - Chang Xu
- School of Information and Electronic Engineering, Zhejiang University of Science and Technology, Hangzhou 310023, China; (C.W.); (Y.Z.)
| | - Yulai Zhang
- School of Information and Electronic Engineering, Zhejiang University of Science and Technology, Hangzhou 310023, China; (C.W.); (Y.Z.)
| | - Peng Lu
- Institute of Computer Innovation Technology, Zhejiang University, Hangzhou 310023, China;
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21
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Azizi S, Culp L, Freyberg J, Mustafa B, Baur S, Kornblith S, Chen T, Tomasev N, Mitrović J, Strachan P, Mahdavi SS, Wulczyn E, Babenko B, Walker M, Loh A, Chen PHC, Liu Y, Bavishi P, McKinney SM, Winkens J, Roy AG, Beaver Z, Ryan F, Krogue J, Etemadi M, Telang U, Liu Y, Peng L, Corrado GS, Webster DR, Fleet D, Hinton G, Houlsby N, Karthikesalingam A, Norouzi M, Natarajan V. Robust and data-efficient generalization of self-supervised machine learning for diagnostic imaging. Nat Biomed Eng 2023:10.1038/s41551-023-01049-7. [PMID: 37291435 DOI: 10.1038/s41551-023-01049-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 05/02/2023] [Indexed: 06/10/2023]
Abstract
Machine-learning models for medical tasks can match or surpass the performance of clinical experts. However, in settings differing from those of the training dataset, the performance of a model can deteriorate substantially. Here we report a representation-learning strategy for machine-learning models applied to medical-imaging tasks that mitigates such 'out of distribution' performance problem and that improves model robustness and training efficiency. The strategy, which we named REMEDIS (for 'Robust and Efficient Medical Imaging with Self-supervision'), combines large-scale supervised transfer learning on natural images and intermediate contrastive self-supervised learning on medical images and requires minimal task-specific customization. We show the utility of REMEDIS in a range of diagnostic-imaging tasks covering six imaging domains and 15 test datasets, and by simulating three realistic out-of-distribution scenarios. REMEDIS improved in-distribution diagnostic accuracies up to 11.5% with respect to strong supervised baseline models, and in out-of-distribution settings required only 1-33% of the data for retraining to match the performance of supervised models retrained using all available data. REMEDIS may accelerate the development lifecycle of machine-learning models for medical imaging.
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Affiliation(s)
| | | | | | | | | | | | - Ting Chen
- Google Research, Mountain View, CA, USA
| | | | | | | | | | | | | | | | - Aaron Loh
- Google Research, Mountain View, CA, USA
| | | | - Yuan Liu
- Google Research, Mountain View, CA, USA
| | | | | | | | | | | | - Fiona Ryan
- Georgia Institute of Technology, Computer Science, Atlanta, GA, USA
| | | | - Mozziyar Etemadi
- School of Medicine/School of Engineering, Northwestern University, Chicago, IL, USA
| | | | - Yun Liu
- Google Research, Mountain View, CA, USA
| | - Lily Peng
- Google Research, Mountain View, CA, USA
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22
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Rehman A, Khan A, Fatima G, Naz S, Razzak I. Review on chest pathogies detection systems using deep learning techniques. Artif Intell Rev 2023; 56:1-47. [PMID: 37362896 PMCID: PMC10027283 DOI: 10.1007/s10462-023-10457-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023]
Abstract
Chest radiography is the standard and most affordable way to diagnose, analyze, and examine different thoracic and chest diseases. Typically, the radiograph is examined by an expert radiologist or physician to decide about a particular anomaly, if exists. Moreover, computer-aided methods are used to assist radiologists and make the analysis process accurate, fast, and more automated. A tremendous improvement in automatic chest pathologies detection and analysis can be observed with the emergence of deep learning. The survey aims to review, technically evaluate, and synthesize the different computer-aided chest pathologies detection systems. The state-of-the-art of single and multi-pathologies detection systems, which are published in the last five years, are thoroughly discussed. The taxonomy of image acquisition, dataset preprocessing, feature extraction, and deep learning models are presented. The mathematical concepts related to feature extraction model architectures are discussed. Moreover, the different articles are compared based on their contributions, datasets, methods used, and the results achieved. The article ends with the main findings, current trends, challenges, and future recommendations.
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Affiliation(s)
- Arshia Rehman
- COMSATS University Islamabad, Abbottabad-Campus, Abbottabad, Pakistan
| | - Ahmad Khan
- COMSATS University Islamabad, Abbottabad-Campus, Abbottabad, Pakistan
| | - Gohar Fatima
- The Islamia University of Bahawalpur, Bahawal Nagar Campus, Bahawal Nagar, Pakistan
| | - Saeeda Naz
- Govt Girls Post Graduate College No.1, Abbottabad, Pakistan
| | - Imran Razzak
- School of Computer Science and Engineering, University of New South Wales, Sydney, Australia
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23
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Ng CKC. Diagnostic Performance of Artificial Intelligence-Based Computer-Aided Detection and Diagnosis in Pediatric Radiology: A Systematic Review. CHILDREN (BASEL, SWITZERLAND) 2023; 10:children10030525. [PMID: 36980083 PMCID: PMC10047006 DOI: 10.3390/children10030525] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Revised: 02/13/2023] [Accepted: 03/07/2023] [Indexed: 03/30/2023]
Abstract
Artificial intelligence (AI)-based computer-aided detection and diagnosis (CAD) is an important research area in radiology. However, only two narrative reviews about general uses of AI in pediatric radiology and AI-based CAD in pediatric chest imaging have been published yet. The purpose of this systematic review is to investigate the AI-based CAD applications in pediatric radiology, their diagnostic performances and methods for their performance evaluation. A literature search with the use of electronic databases was conducted on 11 January 2023. Twenty-three articles that met the selection criteria were included. This review shows that the AI-based CAD could be applied in pediatric brain, respiratory, musculoskeletal, urologic and cardiac imaging, and especially for pneumonia detection. Most of the studies (93.3%, 14/15; 77.8%, 14/18; 73.3%, 11/15; 80.0%, 8/10; 66.6%, 2/3; 84.2%, 16/19; 80.0%, 8/10) reported model performances of at least 0.83 (area under receiver operating characteristic curve), 0.84 (sensitivity), 0.80 (specificity), 0.89 (positive predictive value), 0.63 (negative predictive value), 0.87 (accuracy), and 0.82 (F1 score), respectively. However, a range of methodological weaknesses (especially a lack of model external validation) are found in the included studies. In the future, more AI-based CAD studies in pediatric radiology with robust methodology should be conducted for convincing clinical centers to adopt CAD and realizing its benefits in a wider context.
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Affiliation(s)
- Curtise K C Ng
- Curtin Medical School, Curtin University, GPO Box U1987, Perth, WA 6845, Australia
- Curtin Health Innovation Research Institute (CHIRI), Faculty of Health Sciences, Curtin University, GPO Box U1987, Perth, WA 6845, Australia
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Mustafa Khan M, ul Islam MS, Siddiqui AA, Qadri MT. Dual deterministic model based on deep neural network for the classification of pneumonia. INTELLIGENT DECISION TECHNOLOGIES 2023. [DOI: 10.3233/idt-220192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
Abstract
Pneumonia is a disease caused by the virus (flu, respiratory Syncytial Virus) or bacteria. It can be fatal if not diagnosed and treated at an early stage. Chest X-rays have been widely utilized to diagnose such abnormalities with high exactitude and are primarily responsible for the augment real-world diagnosis process. Poor availability of authentic data and yardstick-based approaches and studies complicates the comparison process and identifying the safest recognition method. In this paper, a Dual Deterministic Model (DD-M) is proposed based on a Deep Neural network that would identify Pneumonia from chest X-ray and distinguish the cause in case of either viral or bacterial infection at an efficiency equivalent of an active radiologist. To accomplish the automated task of the proposed algorithm, an automatic computer-aided system is necessary. The proposed algorithm incorporates deep learning techniques to understand radiographic imaging better. The results were evaluated after implementing the proposed algorithm where; it reveals various aspects of the chest infected with Pneumonia compared to the healthy individual with approximately 97.45% accuracy and distinguishes between the viral and bacterial infection with the efficiency of 88.41%. The proposed algorithm with an improved image dataset will help the doctors diagnose.
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25
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Atasever S, Azginoglu N, Terzi DS, Terzi R. A comprehensive survey of deep learning research on medical image analysis with focus on transfer learning. Clin Imaging 2023; 94:18-41. [PMID: 36462229 DOI: 10.1016/j.clinimag.2022.11.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 10/17/2022] [Accepted: 11/01/2022] [Indexed: 11/13/2022]
Abstract
This survey aims to identify commonly used methods, datasets, future trends, knowledge gaps, constraints, and limitations in the field to provide an overview of current solutions used in medical image analysis in parallel with the rapid developments in transfer learning (TL). Unlike previous studies, this survey grouped the last five years of current studies for the period between January 2017 and February 2021 according to different anatomical regions and detailed the modality, medical task, TL method, source data, target data, and public or private datasets used in medical imaging. Also, it provides readers with detailed information on technical challenges, opportunities, and future research trends. In this way, an overview of recent developments is provided to help researchers to select the most effective and efficient methods and access widely used and publicly available medical datasets, research gaps, and limitations of the available literature.
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Affiliation(s)
- Sema Atasever
- Computer Engineering Department, Nevsehir Hacı Bektas Veli University, Nevsehir, Turkey.
| | - Nuh Azginoglu
- Computer Engineering Department, Kayseri University, Kayseri, Turkey.
| | | | - Ramazan Terzi
- Computer Engineering Department, Amasya University, Amasya, Turkey.
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26
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Modak S, Abdel-Raheem E, Rueda L. Applications of Deep Learning in Disease Diagnosis of Chest Radiographs: A Survey on Materials and Methods. BIOMEDICAL ENGINEERING ADVANCES 2023. [DOI: 10.1016/j.bea.2023.100076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
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27
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Balan E, Saraniya O. Novel neural network architecture using sharpened cosine similarity for robust classification of Covid-19, pneumonia and tuberculosis diseases from X-rays. JOURNAL OF INTELLIGENT & FUZZY SYSTEMS 2023. [DOI: 10.3233/jifs-222840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
COVID-19 is a rapidly proliferating transmissible virus that substantially impacts the world population. Consequently, there is an increasing demand for fast testing, diagnosis, and treatment. However, there is a growing need for quick testing, diagnosis, and treatment. In order to treat infected individuals, stop the spread of the disease, and cure severe pneumonia, early covid-19 detection is crucial. Along with covid-19, various pneumonia etiologies, including tuberculosis, provide additional difficulties for the medical system. In this study, covid-19, pneumonia, tuberculosis, and other specific diseases are categorized using Sharpened Cosine Similarity Network (SCS-Net) rather than dot products in neural networks. In order to benchmark the SCS-Net, the model’s performance is evaluated on binary class (covid-19 and normal), and four-class (tuberculosis, covid-19, pneumonia, and normal) based X-ray images. The proposed SCS-Net for distinguishing various lung disorders has been successfully validated. In multiclass classification, the proposed SCS-Net succeeded with an accuracy of 94.05% and a Cohen’s kappa score of 90.70% ; in binary class, it achieved an accuracy of 96.67% and its Cohen’s kappa score of 93.70%. According to our investigation, SCS in deep neural networks significantly lowers the test error with lower divergence. SCS significantly increases classification accuracy in neural networks and speeds up training.
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Affiliation(s)
- Elakkiya Balan
- Department of Electronics and Communication Engineering, Sri Venkateswara College of Engineering, Chennai, Tamil Nadu, India
| | - O. Saraniya
- Department of Electronics and Communication Engineering, Government College of Technology, Coimbatore, Tamil Nadu, India
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28
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Irmici G, Cè M, Caloro E, Khenkina N, Della Pepa G, Ascenti V, Martinenghi C, Papa S, Oliva G, Cellina M. Chest X-ray in Emergency Radiology: What Artificial Intelligence Applications Are Available? Diagnostics (Basel) 2023; 13:diagnostics13020216. [PMID: 36673027 PMCID: PMC9858224 DOI: 10.3390/diagnostics13020216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Revised: 12/28/2022] [Accepted: 01/03/2023] [Indexed: 01/11/2023] Open
Abstract
Due to its widespread availability, low cost, feasibility at the patient's bedside and accessibility even in low-resource settings, chest X-ray is one of the most requested examinations in radiology departments. Whilst it provides essential information on thoracic pathology, it can be difficult to interpret and is prone to diagnostic errors, particularly in the emergency setting. The increasing availability of large chest X-ray datasets has allowed the development of reliable Artificial Intelligence (AI) tools to help radiologists in everyday clinical practice. AI integration into the diagnostic workflow would benefit patients, radiologists, and healthcare systems in terms of improved and standardized reporting accuracy, quicker diagnosis, more efficient management, and appropriateness of the therapy. This review article aims to provide an overview of the applications of AI for chest X-rays in the emergency setting, emphasizing the detection and evaluation of pneumothorax, pneumonia, heart failure, and pleural effusion.
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Affiliation(s)
- Giovanni Irmici
- Postgraduation School in Radiodiagnostics, Università degli Studi di Milano, Via Festa del Perdono, 7, 20122 Milan, Italy
| | - Maurizio Cè
- Postgraduation School in Radiodiagnostics, Università degli Studi di Milano, Via Festa del Perdono, 7, 20122 Milan, Italy
| | - Elena Caloro
- Postgraduation School in Radiodiagnostics, Università degli Studi di Milano, Via Festa del Perdono, 7, 20122 Milan, Italy
| | - Natallia Khenkina
- Postgraduation School in Radiodiagnostics, Università degli Studi di Milano, Via Festa del Perdono, 7, 20122 Milan, Italy
| | - Gianmarco Della Pepa
- Postgraduation School in Radiodiagnostics, Università degli Studi di Milano, Via Festa del Perdono, 7, 20122 Milan, Italy
| | - Velio Ascenti
- Postgraduation School in Radiodiagnostics, Università degli Studi di Milano, Via Festa del Perdono, 7, 20122 Milan, Italy
| | - Carlo Martinenghi
- Radiology Department, San Raffaele Hospital, Via Olgettina 60, 20132 Milan, Italy
| | - Sergio Papa
- Unit of Diagnostic Imaging and Stereotactic Radiosurgery, Centro Diagnostico Italiano, Via Saint Bon 20, 20147 Milan, Italy
| | - Giancarlo Oliva
- Radiology Department, Fatebenefratelli Hospital, ASST Fatebenefratelli Sacco, Milano, Piazza Principessa Clotilde 3, 20121 Milan, Italy
| | - Michaela Cellina
- Radiology Department, Fatebenefratelli Hospital, ASST Fatebenefratelli Sacco, Milano, Piazza Principessa Clotilde 3, 20121 Milan, Italy
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29
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Nahiduzzaman M, Islam MR, Hassan R. ChestX-Ray6: Prediction of multiple diseases including COVID-19 from chest X-ray images using convolutional neural network. EXPERT SYSTEMS WITH APPLICATIONS 2023; 211:118576. [PMID: 36062267 PMCID: PMC9420006 DOI: 10.1016/j.eswa.2022.118576] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Revised: 08/10/2022] [Accepted: 08/13/2022] [Indexed: 05/27/2023]
Abstract
In the last few decades, several epidemic diseases have been introduced. In some cases, doctors and medical physicians are facing difficulties in identifying these diseases correctly. A machine can perform some of these identification tasks more accurately than a human if it is trained correctly. With time, the number of medical data is increasing. A machine can analyze this medical data and extract knowledge from this data, which can help doctors and medical physicians. This study proposed a lightweight convolutional neural network (CNN) named ChestX-ray6 that automatically detects pneumonia, COVID19, cardiomegaly, lung opacity, and pleural from digital chest x-ray images. Here multiple databases have been combined, containing 9,514 chest x-ray images of normal and other five diseases. The lightweight ChestX-ray6 model achieved an accuracy of 80% for the detection of six diseases. The ChestX-ray6 model has been saved and used for binary classification of normal and pneumonia patients to reveal the model's generalization power. The pre-trained ChestX-ray6 model has achieved an accuracy and recall of 97.94% and 98% for binary classification, which outweighs the state-of-the-art (SOTA) models.
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Affiliation(s)
- Md Nahiduzzaman
- Department of Electrical & Computer Engineering, Rajshahi University of Engineering & Technology, Rajshahi 6204, Bangladesh
| | - Md Rabiul Islam
- Department of Computer Science & Engineering, Rajshahi University of Engineering & Technology, Rajshahi 6204, Bangladesh
| | - Rakibul Hassan
- Department of Electrical & Computer Engineering, Rajshahi University of Engineering & Technology, Rajshahi 6204, Bangladesh
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30
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Shi Y, Wei N, Wang K, Wu J, Tao T, Li N, Lv B. Deep learning-assisted diagnosis of chronic atrophic gastritis in endoscopy. Front Oncol 2023; 13:1122247. [PMID: 36950553 PMCID: PMC10025314 DOI: 10.3389/fonc.2023.1122247] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 02/17/2023] [Indexed: 03/08/2023] Open
Abstract
Background Chronic atrophic gastritis (CAG) is a precancerous condition. It is not easy to detect CAG in endoscopy. Improving the detection rate of CAG under endoscopy is essential to reduce or interrupt the occurrence of gastric cancer. This study aimed to construct a deep learning (DL) model for CAG recognition based on endoscopic images to improve the CAG detection rate during endoscopy. Methods We collected 10,961 endoscopic images and 118 video clips from 4,050 patients. For model training and testing, we divided them into two groups based on the pathological results: CAG and chronic non-atrophic gastritis (CNAG). We compared the performance of four state-of-the-art (SOTA) DL networks for CAG recognition and selected one of them for further improvement. The improved network was called GAM-EfficientNet. Finally, we compared GAM-EfficientNet with three endoscopists and analyzed the decision basis of the network in the form of heatmaps. Results After fine-tuning and transfer learning, the sensitivity, specificity, and accuracy of GAM-EfficientNet reached 93%, 94%, and 93.5% in the external test set and 96.23%, 89.23%, and 92.37% in the video test set, respectively, which were higher than those of the three endoscopists. Conclusions The CAG recognition model based on deep learning has high sensitivity and accuracy, and its performance is higher than that of endoscopists.
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Affiliation(s)
- Yanting Shi
- Department of Gastroenterology, Zibo Central Hospital, Zibo, Shandong, China
| | - Ning Wei
- Department of Gastroenterology, Zibo Central Hospital, Zibo, Shandong, China
| | - Kunhong Wang
- Department of Gastroenterology, Zibo Central Hospital, Zibo, Shandong, China
| | - Jingjing Wu
- Department of Internal Medicine, Zhangdian Maternal and Child Health Care Hospital, Zibo, Shandong, China
| | - Tao Tao
- Department of Gastroenterology, Zibo Central Hospital, Zibo, Shandong, China
| | - Na Li
- Department of Gastroenterology, Zibo Central Hospital, Zibo, Shandong, China
- *Correspondence: Bing Lv, ; Na Li,
| | - Bing Lv
- School of Computer Science and Technology, Shandong University of Technology, Zibo, Shandong, China
- *Correspondence: Bing Lv, ; Na Li,
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31
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Prakash JA, Ravi V, Sowmya V, Soman KP. Stacked ensemble learning based on deep convolutional neural networks for pediatric pneumonia diagnosis using chest X-ray images. Neural Comput Appl 2022; 35:8259-8279. [PMID: 36532883 PMCID: PMC9734540 DOI: 10.1007/s00521-022-08099-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2022] [Accepted: 11/22/2022] [Indexed: 12/12/2022]
Abstract
Pneumonia is an acute respiratory infection caused by bacteria, viruses, or fungi and has become very common in children ranging from 1 to 5 years of age. Common symptoms of pneumonia include difficulty breathing due to inflamed or pus and fluid-filled alveoli. The United Nations Children's Fund reports nearly 800,000 deaths in children due to pneumonia. Delayed diagnosis and overpriced tests are the prime reason for the high mortality rate, especially in underdeveloped countries. A time and cost-efficient diagnosis tool: Chest X-rays, was thus accepted as the standard diagnostic test for pediatric pneumonia. However, the lower radiation levels for diagnosis in children make the task much more onerous and time-consuming. The mentioned challenges initiate the need for a computer-aided detection model that is instantaneous and accurate. Our work proposes a stacked ensemble learning of deep learning-based features for pediatric pneumonia classification. The extracted features from the global average pooling layer of the fine-tuned Xception model pretrained on ImageNet weights are sent to the Kernel Principal Component Analysis for dimensionality reduction. The dimensionally reduced features are further trained and validated on the stacking classifier. The stacking classifier consists of two stages; the first stage uses the Random-Forest classifier, K-Nearest Neighbors, Logistic Regression, XGB classifier, Support Vector Classifier (SVC), Nu-SVC, and MLP classifier. The second stage operates on Logistic Regression using the first stage predictions for the final classification with Stratified K-fold cross-validation to prevent overfitting. The model was tested on the publicly available pediatric pneumonia dataset, achieving an accuracy of 98.3%, precision of 99.29%, recall of 98.36%, F1-score of 98.83%, and an AUC score of 98.24%. The performance shows its reliability for real-time deployment in assisting radiologists and physicians.
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Affiliation(s)
- J. Arun Prakash
- Center for Computational Engineering and Networking (CEN), Amrita School of Engineering, Amrita Vishwa Vidyapeetham, Coimbatore, India
| | - Vinayakumar Ravi
- Center for Artificial Intelligence, Prince Mohammad Bin Fahd University, Khobar, Saudi Arabia
| | - V. Sowmya
- Center for Computational Engineering and Networking (CEN), Amrita School of Engineering, Amrita Vishwa Vidyapeetham, Coimbatore, India
| | - K. P. Soman
- Center for Computational Engineering and Networking (CEN), Amrita School of Engineering, Amrita Vishwa Vidyapeetham, Coimbatore, India
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32
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Zou Y, Amidi E, Luo H, Zhu Q. Ultrasound-enhanced Unet model for quantitative photoacoustic tomography of ovarian lesions. PHOTOACOUSTICS 2022; 28:100420. [PMID: 36325304 PMCID: PMC9619170 DOI: 10.1016/j.pacs.2022.100420] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Revised: 10/04/2022] [Accepted: 10/24/2022] [Indexed: 05/17/2023]
Abstract
Quantitative photoacoustic tomography (QPAT) is a valuable tool in characterizing ovarian lesions for accurate diagnosis. However, accurately reconstructing a lesion's optical absorption distributions from photoacoustic signals measured with multiple wavelengths is challenging because it involves an ill-posed inverse problem with three unknowns: the Grüneisen parameter ( Γ ) , the absorption distribution, and the optical fluence ( ϕ ) . Here, we propose a novel ultrasound-enhanced Unet model (US-Unet) that reconstructs optical absorption distribution from PAT data. A pre-trained ResNet-18 extracts the US features typically identified as morphologies of suspicious ovarian lesions, and a Unet is implemented to reconstruct optical absorption coefficient maps, using the initial pressure and US features extracted by ResNet-18. To test this US-Unet model, we calculated the blood oxygenation saturation values and total hemoglobin concentrations from 655 regions of interest (ROIs) (421 benign, 200 malignant, and 34 borderline ROIs) obtained from clinical images of 35 patients with ovarian/adnexal lesions. A logistic regression model was used to compute the ROC, the area under the ROC curve (AUC) was 0.94, and the accuracy was 0.89. To the best of our knowledge, this is the first study to reconstruct quantitative PAT with PA signals and US-based structural features.
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Affiliation(s)
- Yun Zou
- Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO, USA
| | - Eghbal Amidi
- Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO, USA
| | - Hongbo Luo
- Department of Electrical and System Engineering, Washington University in St. Louis, St. Louis, MO, USA
| | - Quing Zhu
- Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO, USA
- Department of Radiology, Washington University in St. Louis School of Medicine, St. Louis, MO, USA
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33
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Ukwuoma CC, Qin Z, Heyat MBB, Akhtar F, Smahi A, Jackson JK, Furqan Qadri S, Muaad AY, Monday HN, Nneji GU. Automated Lung-Related Pneumonia and COVID-19 Detection Based on Novel Feature Extraction Framework and Vision Transformer Approaches Using Chest X-ray Images. Bioengineering (Basel) 2022; 9:709. [PMID: 36421110 PMCID: PMC9687434 DOI: 10.3390/bioengineering9110709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Revised: 11/04/2022] [Accepted: 11/16/2022] [Indexed: 11/22/2022] Open
Abstract
According to research, classifiers and detectors are less accurate when images are blurry, have low contrast, or have other flaws which raise questions about the machine learning model's ability to recognize items effectively. The chest X-ray image has proven to be the preferred image modality for medical imaging as it contains more information about a patient. Its interpretation is quite difficult, nevertheless. The goal of this research is to construct a reliable deep-learning model capable of producing high classification accuracy on chest x-ray images for lung diseases. To enable a thorough study of the chest X-ray image, the suggested framework first derived richer features using an ensemble technique, then a global second-order pooling is applied to further derive higher global features of the images. Furthermore, the images are then separated into patches and position embedding before analyzing the patches individually via a vision transformer approach. The proposed model yielded 96.01% sensitivity, 96.20% precision, and 98.00% accuracy for the COVID-19 Radiography Dataset while achieving 97.84% accuracy, 96.76% sensitivity and 96.80% precision, for the Covid-ChestX-ray-15k dataset. The experimental findings reveal that the presented models outperform traditional deep learning models and other state-of-the-art approaches provided in the literature.
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Affiliation(s)
- Chiagoziem C. Ukwuoma
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu 610054, China
| | - Zhiguang Qin
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu 610054, China
| | - Md Belal Bin Heyat
- IoT Research Center, College of Computer Science and Software Engineering, Shenzhen University, Shenzhen 518060, China
- Centre for VLSI and Embedded System Technologies, International Institute of Information Technology, Hyderabad 500032, India
- Department of Science and Engineering, Novel Global Community Educational Foundation, Hebersham, NSW 2770, Australia
| | - Faijan Akhtar
- School of Computer Science and Engineering, University of Electronic Science and Technology of China, Chengdu 610054, China
| | - Abla Smahi
- School of Electronic and Computer Engineering, Peking University Shenzhen Graduate School, Peking University, Shenzhen 518060, China
| | - Jehoiada K. Jackson
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu 610054, China
| | - Syed Furqan Qadri
- Research Center for Healthcare Data Science, Zhejiang Lab, Hangzhou 311121, China
| | | | - Happy N. Monday
- School of Computer Science and Engineering, University of Electronic Science and Technology of China, Chengdu 610054, China
| | - Grace U. Nneji
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu 610054, China
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34
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Okolo GI, Katsigiannis S, Ramzan N. IEViT: An enhanced vision transformer architecture for chest X-ray image classification. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2022; 226:107141. [PMID: 36162246 DOI: 10.1016/j.cmpb.2022.107141] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Revised: 08/02/2022] [Accepted: 09/14/2022] [Indexed: 06/16/2023]
Abstract
BACKGROUND AND OBJECTIVE Chest X-ray imaging is a relatively cheap and accessible diagnostic tool that can assist in the diagnosis of various conditions, including pneumonia, tuberculosis, COVID-19, and others. However, the requirement for expert radiologists to view and interpret chest X-ray images can be a bottleneck, especially in remote and deprived areas. Recent advances in machine learning have made possible the automated diagnosis of chest X-ray scans. In this work, we examine the use of a novel Transformer-based deep learning model for the task of chest X-ray image classification. METHODS We first examine the performance of the Vision Transformer (ViT) state-of-the-art image classification machine learning model for the task of chest X-ray image classification, and then propose and evaluate the Input Enhanced Vision Transformer (IEViT), a novel enhanced Vision Transformer model that can achieve improved performance on chest X-ray images associated with various pathologies. RESULTS Experiments on four chest X-ray image data sets containing various pathologies (tuberculosis, pneumonia, COVID-19) demonstrated that the proposed IEViT model outperformed ViT for all the data sets and variants examined, achieving an F1-score between 96.39% and 100%, and an improvement over ViT of up to +5.82% in terms of F1-score across the four examined data sets. IEViT's maximum sensitivity (recall) ranged between 93.50% and 100% across the four data sets, with an improvement over ViT of up to +3%, whereas IEViT's maximum precision ranged between 97.96% and 100% across the four data sets, with an improvement over ViT of up to +6.41%. CONCLUSIONS Results showed that the proposed IEViT model outperformed all ViT's variants for all the examined chest X-ray image data sets, demonstrating its superiority and generalisation ability. Given the relatively low cost and the widespread accessibility of chest X-ray imaging, the use of the proposed IEViT model can potentially offer a powerful, but relatively cheap and accessible method for assisting diagnosis using chest X-ray images.
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Affiliation(s)
| | | | - Naeem Ramzan
- University of the West of Scotland, High St., Paisley, PA1 2BE, UK
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35
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Arun Prakash J, Asswin CR, Ravi V, Sowmya V, Soman KP. Pediatric pneumonia diagnosis using stacked ensemble learning on multi-model deep CNN architectures. MULTIMEDIA TOOLS AND APPLICATIONS 2022; 82:21311-21351. [PMID: 36281318 PMCID: PMC9581770 DOI: 10.1007/s11042-022-13844-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Revised: 06/17/2022] [Accepted: 09/06/2022] [Indexed: 05/27/2023]
Abstract
Pediatric pneumonia has drawn immense awareness due to the high mortality rates over recent years. The acute respiratory infection caused by bacteria, viruses, or fungi infects the lung region and hinders oxygen transport, making breathing difficult due to inflamed or pus and fluid-filled alveoli. Being non-invasive and painless, chest X-rays are the most common modality for pediatric pneumonia diagnosis. However, the low radiation levels for diagnosis in children make accurate detection challenging. This challenge initiates the need for an unerring computer-aided diagnosis model. Our work proposes Contrast Limited Adaptive Histogram Equalization for image enhancement and a stacking classifier based on the fusion of deep learning-based features for pediatric pneumonia diagnosis. The extracted features from the global average pooling layers of the fine-tuned MobileNet, DenseNet121, DenseNet169, and DenseNet201 are concatenated for the final classification using a stacked ensemble classifier. The stacking classifier uses Support Vector Classifier, Nu-SVC, Logistic Regression, K-Nearest Neighbor, Random Forest Classifier, Gaussian Naïve Bayes, AdaBoost classifier, Bagging Classifier, and Extra-trees Classifier for the first stage, and Nu-SVC as the meta-classifier. The stacking classifier validated using Stratified K-Fold cross-validation achieves an accuracy of 98.62%, precision of 98.99%, recall of 99.53%, F1 score of 99.26%, and an AUC score of 93.17% on the publicly available pediatric pneumonia dataset. We expect this model to greatly help the real-time diagnosis of pediatric pneumonia.
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Affiliation(s)
- J Arun Prakash
- Center for Computational Engineering and Networking (CEN), Amrita School of Engineering, Amrita Vishwa Vidyapeetham, Coimbatore, India
| | - CR Asswin
- Center for Computational Engineering and Networking (CEN), Amrita School of Engineering, Amrita Vishwa Vidyapeetham, Coimbatore, India
| | - Vinayakumar Ravi
- Center for Artificial Intelligence, Prince Mohammad Bin Fahd University, Khobar, Saudi Arabia
| | - V Sowmya
- Center for Computational Engineering and Networking (CEN), Amrita School of Engineering, Amrita Vishwa Vidyapeetham, Coimbatore, India
| | - KP Soman
- Center for Computational Engineering and Networking (CEN), Amrita School of Engineering, Amrita Vishwa Vidyapeetham, Coimbatore, India
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36
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Wang B, Liao X, Ni Y, Zhang L, Liang J, Wang J, Liu Y, Sun X, Ou Y, Wu Q, Shi L, Yang Z, Lan L. High-resolution medical image reconstruction based on residual neural network for diagnosis of cerebral aneurysm. Front Cardiovasc Med 2022; 9:1013031. [PMID: 36337881 PMCID: PMC9632742 DOI: 10.3389/fcvm.2022.1013031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2022] [Accepted: 09/29/2022] [Indexed: 11/13/2022] Open
Abstract
Objective Cerebral aneurysms are classified as severe cerebrovascular diseases due to hidden and critical onset, which seriously threaten life and health. An effective strategy to control intracranial aneurysms is the regular diagnosis and timely treatment by CT angiography (CTA) imaging technology. However, unpredictable patient movements make it challenging to capture sub-millimeter-level ultra-high resolution images in a CTA scan. In order to improve the doctor's judgment, it is necessary to improve the clarity of the cerebral aneurysm medical image algorithm. Methods This paper mainly focuses on researching a three-dimensional medical image super-resolution algorithm applied to cerebral aneurysms. Although some scholars have proposed super-resolution reconstruction methods, there are problems such as poor effect and too much reconstruction time. Therefore, this paper designs a lightweight super-resolution network based on a residual neural network. The residual block structure removes the B.N. layer, which can effectively solve the gradient problem. Considering the high-resolution reconstruction needs to take the complete image as the research object and the fidelity of information, this paper selects the channel domain attention mechanism to improve the performance of the residual neural network. Results The new data set of cerebral aneurysms in this paper was obtained by CTA imaging technology of patients in the Department of neurosurgery, the second affiliated of Guizhou Medical University Hospital. The proposed model was evaluated from objective evaluation, model effect, model performance, and detection comparison. On the brain aneurysm data set, we tested the PSNR and SSIM values of 2 and 4 magnification factors, and the scores of our method were 33.01, 28.39, 33.06, and 28.41, respectively, which were better than those of the traditional SRCNN, ESPCN and FSRCNN. Subsequently, the model is applied to practice in this paper, and the effect, performance index and diagnosis of auxiliary doctors are obtained. The experimental results show that the high-resolution image reconstruction model based on the residual neural network designed in this paper plays a more influential role than other image classification methods. This method has higher robustness, accuracy and intuition. Conclusion With the wide application of CTA images in the clinical diagnosis of cerebral aneurysms and the increasing number of application samples, this method is expected to become an additional diagnostic tool that can effectively improve the diagnostic accuracy of cerebral aneurysms.
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Pramanik R, Sarkar S, Sarkar R. An adaptive and altruistic PSO-based deep feature selection method for Pneumonia detection from Chest X-rays. Appl Soft Comput 2022; 128:109464. [PMID: 35966452 PMCID: PMC9364947 DOI: 10.1016/j.asoc.2022.109464] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Revised: 07/11/2022] [Accepted: 07/29/2022] [Indexed: 12/23/2022]
Abstract
Pneumonia is one of the major reasons for child mortality especially in income-deprived regions of the world. Although it can be detected and treated with very less sophisticated instruments and medication, Pneumonia detection still remains a major concern in developing countries. Computer-aided based diagnosis (CAD) systems can be used in such countries due to their lower operating costs than professional medical experts. In this paper, we propose a CAD system for Pneumonia detection from Chest X-rays, using the concepts of deep learning and a meta-heuristic algorithm. We first extract deep features from the pre-trained ResNet50, fine-tuned on a target Pneumonia dataset. Then, we propose a feature selection technique based on particle swarm optimization (PSO), which is modified using a memory-based adaptation parameter, and enriched by incorporating an altruistic behavior into the agents. We name our feature selection method as adaptive and altruistic PSO (AAPSO). The proposed method successfully eliminates non-informative features obtained from the ResNet50 model, thereby improving the Pneumonia detection ability of the overall framework. Extensive experimentation and thorough analysis on a publicly available Pneumonia dataset establish the superiority of the proposed method over several other frameworks used for Pneumonia detection. Apart from Pneumonia detection, AAPSO is further evaluated on some standard UCI datasets, gene expression datasets for cancer prediction and a COVID-19 prediction dataset. The overall results are satisfactory, thereby confirming the usefulness of AAPSO in dealing with varied real-life problems. The supporting source codes of this work can be found at https://github.com/rishavpramanik/AAPSO.
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Affiliation(s)
- Rishav Pramanik
- Department of Computer Science and Engineering, Jadavpur University, Kolkata, 700032, India
| | - Sourodip Sarkar
- Department of Electronics and Communication Engineering, Heritage Institute of Technology, Kolkata, 700107, India
| | - Ram Sarkar
- Department of Computer Science and Engineering, Jadavpur University, Kolkata, 700032, India
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Malik H, Anees T, Din M, Naeem A. CDC_Net: multi-classification convolutional neural network model for detection of COVID-19, pneumothorax, pneumonia, lung Cancer, and tuberculosis using chest X-rays. MULTIMEDIA TOOLS AND APPLICATIONS 2022; 82:13855-13880. [PMID: 36157356 PMCID: PMC9485026 DOI: 10.1007/s11042-022-13843-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Revised: 06/30/2022] [Accepted: 09/06/2022] [Indexed: 05/27/2023]
Abstract
Coronavirus (COVID-19) has adversely harmed the healthcare system and economy throughout the world. COVID-19 has similar symptoms as other chest disorders such as lung cancer (LC), pneumothorax, tuberculosis (TB), and pneumonia, which might mislead the clinical professionals in detecting a new variant of flu called coronavirus. This motivates us to design a model to classify multi-chest infections. A chest x-ray is the most ubiquitous disease diagnosis process in medical practice. As a result, chest x-ray examinations are the primary diagnostic tool for all of these chest infections. For the sake of saving human lives, paramedics and researchers are working tirelessly to establish a precise and reliable method for diagnosing the disease COVID-19 at an early stage. However, COVID-19's medical diagnosis is exceedingly idiosyncratic and varied. A multi-classification method based on the deep learning (DL) model is developed and tested in this work to automatically classify the COVID-19, LC, pneumothorax, TB, and pneumonia from chest x-ray images. COVID-19 and other chest tract disorders are diagnosed using a convolutional neural network (CNN) model called CDC Net that incorporates residual network thoughts and dilated convolution. For this study, we used this model in conjunction with publically available benchmark data to identify these diseases. For the first time, a single deep learning model has been used to diagnose five different chest ailments. In terms of classification accuracy, recall, precision, and f1-score, we compared the proposed model to three CNN-based pre-trained models, such as Vgg-19, ResNet-50, and inception v3. An AUC of 0.9953 was attained by the CDC Net when it came to identifying various chest diseases (with an accuracy of 99.39%, a recall of 98.13%, and a precision of 99.42%). Moreover, CNN-based pre-trained models Vgg-19, ResNet-50, and inception v3 achieved accuracy in classifying multi-chest diseases are 95.61%, 96.15%, and 95.16%, respectively. Using chest x-rays, the proposed model was found to be highly accurate in diagnosing chest diseases. Based on our testing data set, the proposed model shows significant performance as compared to its competitor methods. Statistical analyses of the datasets using McNemar's, and ANOVA tests also showed the robustness of the proposed model.
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Affiliation(s)
- Hassaan Malik
- Department of Computer Science, University of Management and Technology, Lahore, 54000 Pakistan
| | - Tayyaba Anees
- Department of Software Engineering, University of Management and Technology, Lahore, 54000 Pakistan
| | - Muizzud Din
- Department of Computer Science, Ghazi University, Dera Ghazi Khan, 32200 Pakistan
| | - Ahmad Naeem
- Department of Computer Science, University of Management and Technology, Lahore, 54000 Pakistan
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Ukwuoma CC, Qin Z, Belal Bin Heyat M, Akhtar F, Bamisile O, Muad AY, Addo D, Al-Antari MA. A Hybrid Explainable Ensemble Transformer Encoder for Pneumonia Identification from Chest X-ray Images. J Adv Res 2022:S2090-1232(22)00202-8. [PMID: 36084812 DOI: 10.1016/j.jare.2022.08.021] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 08/11/2022] [Accepted: 08/31/2022] [Indexed: 10/14/2022] Open
Abstract
INTRODUCTION Pneumonia is a microorganism infection that causes chronic inflammation of the human lung cells. Chest X-ray imaging is the most well-known screening approach used for detecting pneumonia in the early stages. While chest-Xray images are mostly blurry with low illumination, a strong feature extraction approach is required for promising identification performance. OBJECTIVES A new hybrid explainable deep learning framework is proposed for accurate pneumonia disease identification using chest X-ray images. METHODS The proposed hybrid workflow is developed by fusing the capabilities of both ensemble convolutional networks and the Transformer Encoder mechanism. The ensemble learning backbone is used to extract strong features from the raw input X-ray images in two different scenarios: ensemble A (i.e., DenseNet201, VGG16, and GoogleNet) and ensemble B (i.e., DenseNet201, InceptionResNetV2, and Xception). Whereas, the Transformer Encoder is built based on the self-attention mechanism with multilayer perceptron (MLP) for accurate disease identification. The visual explainable saliency maps are derived to emphasize the crucial predicted regions on the input X-ray images. The end-to-end training process of the proposed deep learning models over all scenarios is performed for binary and multi-class classification tasks. RESULTS The proposed hybrid deep learning model recorded 99.21% classification performance in terms of overall accuracy and F1-score for the binary classification task, while it achieved 98.19% accuracy and 97.29% F1-score for multi-classification task. For the ensemble binary identification scenario, ensemble A recorded 97.22% accuracy and 97.14% F1-score, while ensemble B achieved 96.44% for both accuracy and F1-score. For the ensemble, multiclass identification scenario, ensemble A recorded 97.2% accuracy and 95.8% F1-score, while ensemble B recorded 96.4% accuracy and 94.9% F1-score. CONCLUSION The proposed hybrid deep learning framework could provide promising and encouraging explainable identification performance comparing with individual, ensemble models, or even the latest models in the literature. The code is available here: https://github.com/chiagoziemchima/Pneumonia_Identificaton.
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Affiliation(s)
- Chiagoziem C Ukwuoma
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu, Sichuan, China
| | - Zhiguang Qin
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu, Sichuan, China.
| | - Md Belal Bin Heyat
- IoT Research Center, College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, Guangdong 518060, China; International Institute of Information Technology, Hyderabad, Telangana 500032, India; Department of Science and Engineering, Novel Global Community Educational Foundation, Hebersham, NSW 2770, Australia
| | - Faijan Akhtar
- School of Computer Science and Engineering, University of Electronic Science and Technology of China, Chengdu, Sichuan 611731, China
| | - Olusola Bamisile
- Sichuan Industrial Internet Intelligent Monitoring and Application Engineering Technology Research Center, Chengdu University of Technology, China
| | - Abdullah Y Muad
- Department of Studies in Computer Science, University of Mysore, Manasagangothri, Mysore, India
| | - Daniel Addo
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu, Sichuan, China
| | - Mugahed A Al-Antari
- Department of Artificial Intelligence, College of Software & Convergence Technology, Daeyang AI Center, Sejong University, Seoul 05006, Korea.
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Image Recognition of Pediatric Pneumonia Based on Fusion of Texture Features and Depth Features. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022; 2022:1973508. [PMID: 36060651 PMCID: PMC9439900 DOI: 10.1155/2022/1973508] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Revised: 05/11/2022] [Accepted: 07/07/2022] [Indexed: 11/17/2022]
Abstract
Pneumonia is one of the diseases that seriously endangers human health, and it is also the leading cause of death of children under the age of five in China. The most commonly used imaging examination method for radiologists is mainly based on chest X-ray images. Still, imaging errors often result during imaging examinations due to objective factors such as visual fatigue and lack of experience. Therefore, this paper proposes a feature fusion model, FC-VGG, based on the fusion of texture features (local binary pattern LBP and directional gradient histogram HOG) and depth features. The model improves model performance by adding detailed information in texture features to the convolutional neural network while making the model more suitable for clinical use. We input the X-ray image with texture features into the modified VGG16 model, C-VGG, and then add the Add fusion method to C-VGG for feature fusion so that FC-VGG is obtained, so FC-VGG has texture features detailed information and abstract information of deep features. Through experiments, our model has achieved 92.19% accuracy in recognizing children's pneumonia images, 93.44% average precision, 92.19% average recall, and 92.81% average F1 coefficient, and the model performance exceeds existing deep learning models and traditional feature recognition algorithms.
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Nirmaladevi J, Vidhyalakshmi M, Edwin EB, Venkateswaran N, Avasthi V, Alarfaj AA, Hirad AH, Rajendran RK, Hailu T. Deep Convolutional Neural Network Mechanism Assessment of COVID-19 Severity. BIOMED RESEARCH INTERNATIONAL 2022; 2022:1289221. [PMID: 36051480 PMCID: PMC9427302 DOI: 10.1155/2022/1289221] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Revised: 06/13/2022] [Accepted: 06/26/2022] [Indexed: 12/23/2022]
Abstract
As an epidemic, COVID-19's core test instrument still has serious flaws. To improve the present condition, all capabilities and tools available in this field are being used to combat the pandemic. Because of the contagious characteristics of the unique coronavirus (COVID-19) infection, an overwhelming comparison with patients queues up for pulmonary X-rays, overloading physicians and radiology and significantly impacting the quality of care, diagnosis, and outbreak prevention. Given the scarcity of clinical services such as intensive care and motorized ventilation systems in the aspect of this vastly transmissible ailment, it is critical to categorize patients as per their risk categories. This research describes a novel use of the deep convolutional neural network (CNN) technique to COVID-19 illness assessment seriousness. Utilizing chest X-ray images as contribution, an unsupervised DCNN model is constructed and suggested to split COVID-19 individuals into four seriousness classrooms: low, medium, serious, and crucial with an accuracy level of 96 percent. The efficiency of the DCNN model developed with the proposed methodology is demonstrated by empirical findings on a suitably huge sum of chest X-ray scans. To the evidence relating, it is the first COVID-19 disease incidence evaluation research with four different phases, to use a reasonably high number of X-ray images dataset and a DCNN with nearly all hyperparameters dynamically adjusted by the variable selection optimization task.
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Affiliation(s)
- J. Nirmaladevi
- Department of Information Science and Engineering, Bannari Amman Institute of Technology, Sathyamangalam, Tamil Nadu 638401, India
| | - M. Vidhyalakshmi
- Department of Electronics and Communication Engineering, SRM Institute of Science and Technology, Ramapuram, Chennai, 600089 Tamil Nadu, India
| | - E. Bijolin Edwin
- Department of Computer Science and Engineering, KarunyaInstitue of Technology and Sciences, Coimbatore, Tamil Nadu 641114, India
| | - N. Venkateswaran
- Department of Management Studies, Panimalar Engineering College, Chennai, Tamil Nadu 600123, India
| | - Vinay Avasthi
- School of Computer Science, University of Petroleum & Energy Studies, Dehradun, Uttarakhand 248007, India
| | - Abdullah A. Alarfaj
- Department of Botany and Microbiology, College of Science, King Saud University, P. O. Box.2455, Riyadh 11451, Saudi Arabia
| | - Abdurahman Hajinur Hirad
- Department of Botany and Microbiology, College of Science, King Saud University, P. O. Box.2455, Riyadh 11451, Saudi Arabia
| | - R. K. Rajendran
- Department of Engineering, University of Houston, Texas, USA
| | - TegegneAyalew Hailu
- Department of Electrical and Computer Engineering, Kombolcha Institute of Technology, Wollo University, Ethiopia
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Deep Learning-Aided Automated Pneumonia Detection and Classification Using CXR Scans. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:7474304. [PMID: 35936981 PMCID: PMC9351538 DOI: 10.1155/2022/7474304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/20/2022] [Accepted: 07/08/2022] [Indexed: 12/15/2022]
Abstract
The COVID-19 pandemic has caused a worldwide catastrophe and widespread devastation that reeled almost all countries. The pandemic has mounted pressure on the existing healthcare system and caused panic and desperation. The gold testing standard for COVID-19 detection, reverse transcription-polymerase chain reaction (RT-PCR), has shown its limitations with 70% accuracy, contributing to the incorrect diagnosis that exaggerated the complexities and increased the fatalities. The new variations further pose unseen challenges in terms of their diagnosis and subsequent treatment. The COVID-19 virus heavily impacts the lungs and fills the air sacs with fluid causing pneumonia. Thus, chest X-ray inspection is a viable option if the inspection detects COVID-19-induced pneumonia, hence confirming the exposure of COVID-19. Artificial intelligence and machine learning techniques are capable of examining chest X-rays in order to detect patterns that can confirm the presence of COVID-19-induced pneumonia. This research used CNN and deep learning techniques to detect COVID-19-induced pneumonia from chest X-rays. Transfer learning with fine-tuning ensures that the proposed work successfully classifies COVID-19-induced pneumonia, regular pneumonia, and normal conditions. Xception, Visual Geometry Group 16, and Visual Geometry Group 19 are used to realize transfer learning. The experimental results were promising in terms of precision, recall, F1 score, specificity, false omission rate, false negative rate, false positive rate, and false discovery rate with a COVID-19-induced pneumonia detection accuracy of 98%. Experimental results also revealed that the proposed work has not only correctly identified COVID-19 exposure but also made a distinction between COVID-19-induced pneumonia and regular pneumonia, as the latter is a very common disease, while COVID-19 is more lethal. These results mitigated the concern and overlap in the diagnosis of COVID-19-induced pneumonia and regular pneumonia. With further integrations, it can be employed as a potential standard model in differentiating the various lung-related infections, including COVID-19.
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Ravi V, Acharya V, Alazab M. A multichannel EfficientNet deep learning-based stacking ensemble approach for lung disease detection using chest X-ray images. CLUSTER COMPUTING 2022; 26:1181-1203. [PMID: 35874187 PMCID: PMC9295885 DOI: 10.1007/s10586-022-03664-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/30/2022] [Revised: 05/21/2022] [Accepted: 06/17/2022] [Indexed: 06/15/2023]
Abstract
This paper proposes a multichannel deep learning approach for lung disease detection using chest X-rays. The multichannel models used in this work are EfficientNetB0, EfficientNetB1, and EfficientNetB2 pretrained models. The features from EfficientNet models are fused together. Next, the fused features are passed into more than one non-linear fully connected layer. Finally, the features passed into a stacked ensemble learning classifier for lung disease detection. The stacked ensemble learning classifier contains random forest and SVM in the first stage and logistic regression in the second stage for lung disease detection. The performance of the proposed method is studied in detail for more than one lung disease such as pneumonia, Tuberculosis (TB), and COVID-19. The performances of the proposed method for lung disease detection using chest X-rays compared with similar methods with the aim to show that the method is robust and has the capability to achieve better performances. In all the experiments on lung disease, the proposed method showed better performance and outperformed similar lung disease existing methods. This indicates that the proposed method is robust and generalizable on unseen chest X-rays data samples. To ensure that the features learnt by the proposed method is optimal, t-SNE feature visualization was shown on all three lung disease models. Overall, the proposed method has shown 98% detection accuracy for pediatric pneumonia lung disease, 99% detection accuracy for TB lung disease, and 98% detection accuracy for COVID-19 lung disease. The proposed method can be used as a tool for point-of-care diagnosis by healthcare radiologists.Journal instruction requires a city for affiliations; however, this is missing in affiliation 3. Please verify if the provided city is correct and amend if necessary.correct.
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Affiliation(s)
- Vinayakumar Ravi
- Center for Artificial Intelligence, Prince Mohammad Bin Fahd University, Khobar, Saudi Arabia
| | - Vasundhara Acharya
- Manipal Institute of Technology (MIT), Manipal Academy of Higher Education (MAHE), Manipal, India
| | - Mamoun Alazab
- College of Engineering, IT and Environment, Charles Darwin University, Casuarina, NT Australia
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Neural architecture search for pneumonia diagnosis from chest X-rays. Sci Rep 2022; 12:11309. [PMID: 35788644 PMCID: PMC9252574 DOI: 10.1038/s41598-022-15341-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Accepted: 06/22/2022] [Indexed: 11/25/2022] Open
Abstract
Pneumonia is one of the diseases that causes the most fatalities worldwide, especially in children. Recently, pneumonia-caused deaths have increased dramatically due to the novel Coronavirus global pandemic. Chest X-ray (CXR) images are one of the most readily available and common imaging modality for the detection and identification of pneumonia. However, the detection of pneumonia from chest radiography is a difficult task even for experienced radiologists. Artificial Intelligence (AI) based systems have great potential in assisting in quick and accurate diagnosis of pneumonia from chest X-rays. The aim of this study is to develop a Neural Architecture Search (NAS) method to find the best convolutional architecture capable of detecting pneumonia from chest X-rays. We propose a Learning by Teaching framework inspired by the teaching-driven learning methodology from humans, and conduct experiments on a pneumonia chest X-ray dataset with over 5000 images. Our proposed method yields an area under ROC curve (AUC) of 97.6% for pneumonia detection, which improves upon previous NAS methods by 5.1% (absolute).
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Padash S, Mohebbian MR, Adams SJ, Henderson RDE, Babyn P. Pediatric chest radiograph interpretation: how far has artificial intelligence come? A systematic literature review. Pediatr Radiol 2022; 52:1568-1580. [PMID: 35460035 PMCID: PMC9033522 DOI: 10.1007/s00247-022-05368-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Revised: 02/28/2022] [Accepted: 03/24/2022] [Indexed: 10/24/2022]
Abstract
Most artificial intelligence (AI) studies have focused primarily on adult imaging, with less attention to the unique aspects of pediatric imaging. The objectives of this study were to (1) identify all publicly available pediatric datasets and determine their potential utility and limitations for pediatric AI studies and (2) systematically review the literature to assess the current state of AI in pediatric chest radiograph interpretation. We searched PubMed, Web of Science and Embase to retrieve all studies from 1990 to 2021 that assessed AI for pediatric chest radiograph interpretation and abstracted the datasets used to train and test AI algorithms, approaches and performance metrics. Of 29 publicly available chest radiograph datasets, 2 datasets included solely pediatric chest radiographs, and 7 datasets included pediatric and adult patients. We identified 55 articles that implemented an AI model to interpret pediatric chest radiographs or pediatric and adult chest radiographs. Classification of chest radiographs as pneumonia was the most common application of AI, evaluated in 65% of the studies. Although many studies report high diagnostic accuracy, most algorithms were not validated on external datasets. Most AI studies for pediatric chest radiograph interpretation have focused on a limited number of diseases, and progress is hindered by a lack of large-scale pediatric chest radiograph datasets.
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Affiliation(s)
- Sirwa Padash
- Department of Medical Imaging, University of Saskatchewan, 103 Hospital Drive, Saskatoon, Saskatchewan, S7N 0W8, Canada.
- Department of Radiology, Mayo Clinic, Rochester, MN, USA.
| | - Mohammad Reza Mohebbian
- Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, Saskatchewan, Canada
| | - Scott J Adams
- Department of Medical Imaging, University of Saskatchewan, 103 Hospital Drive, Saskatoon, Saskatchewan, S7N 0W8, Canada
| | - Robert D E Henderson
- Department of Medical Imaging, University of Saskatchewan, 103 Hospital Drive, Saskatoon, Saskatchewan, S7N 0W8, Canada
| | - Paul Babyn
- Department of Medical Imaging, University of Saskatchewan, 103 Hospital Drive, Saskatoon, Saskatchewan, S7N 0W8, Canada
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Pneumonia Detection on Chest X-ray Images Using Ensemble of Deep Convolutional Neural Networks. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12136448] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Abstract
Pneumonia is a life-threatening lung infection resulting from several different viral infections. Identifying and treating pneumonia on chest X-ray images can be difficult due to its similarity to other pulmonary diseases. Thus, the existing methods for predicting pneumonia cannot attain substantial levels of accuracy. This paper presents a computer-aided classification of pneumonia, coined Ensemble Learning (EL), to simplify the diagnosis process on chest X-ray images. Our proposal is based on Convolutional Neural Network (CNN) models , which are pretrained CNN models that have been recently employed to enhance the performance of many medical tasks instead of training CNN models from scratch. We propose to use three well-known CNNs (DenseNet169, MobileNetV2, and Vision Transformer) pretrained using the ImageNet database.
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Wang X, Gao M, Xie J, Deng Y, Tu W, Yang H, Liang S, Xu P, Zhang M, Lu Y, Fu C, Li Q, Fan L, Liu S. Development, Validation, and Comparison of Image-Based, Clinical Feature-Based and Fusion Artificial Intelligence Diagnostic Models in Differentiating Benign and Malignant Pulmonary Ground-Glass Nodules. Front Oncol 2022; 12:892890. [PMID: 35747810 PMCID: PMC9209648 DOI: 10.3389/fonc.2022.892890] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Accepted: 04/22/2022] [Indexed: 11/13/2022] Open
Abstract
Objective This study aimed to develop effective artificial intelligence (AI) diagnostic models based on CT images of pulmonary nodules only, on descriptional and quantitative clinical or image features, or on a combination of both to differentiate benign and malignant ground-glass nodules (GGNs) to assist in the determination of surgical intervention. Methods Our study included a total of 867 nodules (benign nodules: 112; malignant nodules: 755) with postoperative pathological diagnoses from two centers. For the diagnostic models to discriminate between benign and malignant GGNs, we adopted three different artificial intelligence (AI) approaches: a) an image-based deep learning approach to build a deep neural network (DNN); b) a clinical feature-based machine learning approach based on the clinical and image features of nodules; c) a fusion diagnostic model integrating the original images and the clinical and image features. The performance of the models was evaluated on an internal test dataset (the “Changzheng Dataset”) and an independent test dataset collected from an external institute (the “Longyan Dataset”). In addition, the performance of automatic diagnostic models was compared with that of manual evaluations by two radiologists on the ‘Longyan dataset’. Results The image-based deep learning model achieved an appealing diagnostic performance, yielding AUC values of 0.75 (95% confidence interval [CI]: 0.62, 0.89) and 0.76 (95% CI: 0.61, 0.90), respectively, on both the Changzheng and Longyan datasets. The clinical feature-based machine learning model performed well on the Changzheng dataset (AUC, 0.80 [95% CI: 0.64, 0.96]), whereas it performed poorly on the Longyan dataset (AUC, 0.62 [95% CI: 0.42, 0.83]). The fusion diagnostic model achieved the best performance on both the Changzheng dataset (AUC, 0.82 [95% CI: 0.71-0.93]) and the Longyan dataset (AUC, 0.83 [95% CI: 0.70-0.96]), and it achieved a better specificity (0.69) than the radiologists (0.33-0.44) on the Longyan dataset. Conclusion The deep learning models, including both the image-based deep learning model and the fusion model, have the ability to assist radiologists in differentiating between benign and malignant nodules for the precise management of patients with GGNs.
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Affiliation(s)
- Xiang Wang
- Department of Radiology, Changzheng Hospital, Navy Medical University, Shanghai, China
| | - Man Gao
- Department of Radiology, Changzheng Hospital, Navy Medical University, Shanghai, China
| | - Jicai Xie
- Department of Radiology, The Second People’s Hospital of Yuhuan, Yuhuan, China
| | - Yanfang Deng
- Department of Radiology, Longyan First Affiliated Hospital of Fujian Medical University, Fujian, China
| | - Wenting Tu
- Department of Radiology, Changzheng Hospital, Navy Medical University, Shanghai, China
| | - Hua Yang
- Department of Research, Shanghai Aitrox Technology Corporation Limited, Shanghai, China
| | - Shuang Liang
- Department of Research, Shanghai Aitrox Technology Corporation Limited, Shanghai, China
| | - Panlong Xu
- Department of Research, Shanghai Aitrox Technology Corporation Limited, Shanghai, China
| | - Mingzi Zhang
- Department of Research, Shanghai Aitrox Technology Corporation Limited, Shanghai, China
| | - Yang Lu
- Department of Research, Shanghai Aitrox Technology Corporation Limited, Shanghai, China
| | - ChiCheng Fu
- Department of Research, Shanghai Aitrox Technology Corporation Limited, Shanghai, China
| | - Qiong Li
- Department of Radiology, Sun Yat-sen University Cancer Center (SYSUCC), Guangzhou, China
- *Correspondence: Qiong Li, ; Li Fan, ; Shiyuan Liu,
| | - Li Fan
- Department of Radiology, Changzheng Hospital, Navy Medical University, Shanghai, China
- *Correspondence: Qiong Li, ; Li Fan, ; Shiyuan Liu,
| | - Shiyuan Liu
- Department of Radiology, Changzheng Hospital, Navy Medical University, Shanghai, China
- *Correspondence: Qiong Li, ; Li Fan, ; Shiyuan Liu,
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Hu S, Zhu Y, Dong D, Wang B, Zhou Z, Wang C, Tian J, Peng Y. Chest Radiographs Using a Context-Fusion Convolution Neural Network (CNN): Can It Distinguish the Etiology of Community-Acquired Pneumonia (CAP) in Children? J Digit Imaging 2022; 35:1079-1090. [PMID: 35585465 PMCID: PMC9116701 DOI: 10.1007/s10278-021-00543-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Revised: 11/02/2021] [Accepted: 11/11/2021] [Indexed: 11/25/2022] Open
Abstract
Clinical symptoms and inflammatory markers cannot reliably distinguish the etiology of CAP, and chest radiographs have abundant information related with CAP. Hence, we developed a context-fusion convolution neural network (CNN) to explore the application of chest radiographs to distinguish the etiology of CAP in children. This retrospective study included 1769 cases of pediatric pneumonia (viral pneumonia, n = 487; bacterial pneumonia, n = 496; and mycoplasma pneumonia, n = 786). The chest radiographs of the first examination, C-reactive protein (CRP), and white blood cell (WBC) were collected for analysis. All patients were stochastically divided into training, validation, and test cohorts in a 7:1:2 ratio. Automatic lung segmentation and hand-crafted pneumonia lesion segmentation were performed, from which three image-based models including a full-lung model, a local-lesion model, and a context-fusion model were built; two clinical characteristics were used to build a clinical model, while a logistic regression model combined the best CNN model and two clinical characteristics. Our experiments showed that the context-fusion model which integrated the features of the full-lung and local-lesion had better performance than the full-lung model and local-lesion model. The context-fusion model had area under curves of 0.86, 0.88, and 0.93 in identifying viral, bacterial, and mycoplasma pneumonia on the test cohort respectively. The addition of clinical characteristics to the context-fusion model obtained slight improvement. Mycoplasma pneumonia was more easily identified compared with the other two types. Using chest radiographs, we developed a context-fusion CNN model with good performance for noninvasively diagnosing the etiology of community-acquired pneumonia in children, which would help improve early diagnosis and treatment.
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Affiliation(s)
- Shasha Hu
- Department of Radiology, National Center for Children' Health, Beijing Children's Hospital, Capital Medical University, Beijing, 100045, China
| | - Yongbei Zhu
- CAS Key Laboratory of Molecular Imaging, State Key Laboratory of Management and Control for Complex Systems, Beijing Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, 100190, China
- Beijing Advanced Innovation Center for Big Data-Based Precision Medicine, Beihang University, Beijing, 100191, China
| | - Di Dong
- CAS Key Laboratory of Molecular Imaging, State Key Laboratory of Management and Control for Complex Systems, Beijing Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, 100190, China
- School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Bei Wang
- Department of Radiology, National Center for Children' Health, Beijing Children's Hospital, Capital Medical University, Beijing, 100045, China
| | - Zuofu Zhou
- Department of Radiology, Fujian Provincial Maternity and Children's Hospital, Fujian Medical University, Fuzhou, 350000, China
| | - Chi Wang
- Department of Radiology, National Center for Children' Health, Beijing Children's Hospital, Capital Medical University, Beijing, 100045, China
| | - Jie Tian
- CAS Key Laboratory of Molecular Imaging, State Key Laboratory of Management and Control for Complex Systems, Beijing Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, 100190, China.
- Beijing Advanced Innovation Center for Big Data-Based Precision Medicine, Beihang University, Beijing, 100191, China.
| | - Yun Peng
- Department of Radiology, National Center for Children' Health, Beijing Children's Hospital, Capital Medical University, Beijing, 100045, China.
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Sevli O. A deep learning-based approach for diagnosing COVID-19 on chest x-ray images, and a test study with clinical experts. Comput Intell 2022; 38:COIN12526. [PMID: 35941907 PMCID: PMC9348396 DOI: 10.1111/coin.12526] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Revised: 03/06/2022] [Accepted: 04/05/2022] [Indexed: 01/20/2023]
Abstract
Pneumonia is among the common symptoms of the virus that causes COVID-19, which has turned into a worldwide pandemic. It is possible to diagnose pneumonia by examining chest radiographs. Chest x-ray (CXR) is a fast, low-cost, and practical method widely used in this field. The fact that different pathogens other than COVID-19 also cause pneumonia and the radiographic images of all are similar make it difficult to detect the source of the disease. In this study, automatic detection of COVID-19 cases over CXR images was tried to be performed using convolutional neural network (CNN), a deep learning technique. Classifications were carried out using six different architectures on the dataset consisting of 15,153 images of three different types: healthy, COVID-19, and other viral-induced pneumonia. In the classifications performed with five different state-of-art models, ResNet18, GoogLeNet, AlexNet, VGG16, and DenseNet161, and a minimal CNN architecture specific to this study, the most successful result was obtained with the ResNet18 architecture as 99.25% accuracy. Although the minimal CNN model developed for this study has a simpler structure, it was observed that it has a success to compete with more complex models. The performances of the models used in this study were compared with similar studies in the literature and it was revealed that they generally achieved higher success. The model with the highest success was transformed into a test application, tested by 10 volunteer clinicians, and it was concluded that it provides 99.06% accuracy in practical use. This result reveals that the conducted study can play the role of a successful decision support system for experts.
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Affiliation(s)
- Onur Sevli
- Faculty of Engineering and Architecture, Computer Engineering DepartmentBurdur Mehmet Akif Ersoy UniversityBurdurTurkey
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