1
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Mondal A, Mondal D, Sarkar S, Shivpuje U, Mondal J, Talukdar P. Self-Assembled Hydrazide-Based Nanochannels: Efficient Water Translocation and Salt Rejection. Angew Chem Int Ed Engl 2025; 64:e202415510. [PMID: 39158108 DOI: 10.1002/anie.202415510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Accepted: 08/19/2024] [Indexed: 08/20/2024]
Abstract
Nature has ingeniously developed specialized water transporters that effectively reject ions, including protons, while transporting water across membranes. These natural water channels, known as aquaporins (AQPs), have inspired the creation of Artificial Water Channels (AWCs). However, replicating superfast water transport with synthetic molecular structures that exclude salts and protons is a challenging task. This endeavor demands the coexistence of a suitable water-binding site and a selective filter for precise water transportation. Here, we present small-molecule hydrazides 1 b-1 d that self-assemble into a rosette-type nanochannel assembly through intermolecular hydrogen bonding and π-π stacking interactions, and selectively transport water molecules across lipid bilayer membranes. The experimental analysis demonstrates notable permeability rates for the 1 c derivative, enabling approximately 3.18×108 water molecules to traverse the channel per second. This permeability rate is about one order of magnitude lower than that of AQPs. Of particular significance, the 1 c ensures exclusive passage of water molecules while effectively blocking salts and protons. MD simulation studies confirmed the stability and water transport properties of the water channel assembly inside the bilayer membranes at ambient conditions.
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Affiliation(s)
- Abhishek Mondal
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune, 411008, Maharashtra, India
- Present Address: Leiden Institute of Chemistry, Leiden University, 2333, CC Leiden, The Netherlands
| | - Debashis Mondal
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune, 411008, Maharashtra, India
- Present Address: Faculty of Chemistry, Biological and Chemical Research Centre, University of Warsaw, Zwirkii Wigury 101, Warsaw, 02-089, Poland
| | - Susmita Sarkar
- Center for Interdisciplinary Sciences, Tata Institute of Fundamental Research, Hyderabad 500046, Telangana, India
| | - Umesh Shivpuje
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune, 411008, Maharashtra, India
| | - Jagannath Mondal
- Center for Interdisciplinary Sciences, Tata Institute of Fundamental Research, Hyderabad 500046, Telangana, India
| | - Pinaki Talukdar
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune, 411008, Maharashtra, India
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2
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Oh H, Samineni L, Vogler RJ, Yao C, Behera H, Dhiman R, Horner A, Kumar M. Approaching Ideal Selectivity with Bioinspired and Biomimetic Membranes. ACS NANO 2025; 19:31-53. [PMID: 39718215 DOI: 10.1021/acsnano.4c09699] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2024]
Abstract
The applications of polymeric membranes have grown rapidly compared to traditional separation technologies due to their energy efficiency and smaller footprint. However, their potential is not fully realized due, in part, to their heterogeneity, which results in a "permeability-selectivity" trade-off for most membrane applications. Inspired by the intricate architecture and excellent homogeneity of biological membranes, bioinspired and biomimetic membranes (BBMs) aim to emulate biological membranes for practical applications. This Review highlights the potential of BBMs to overcome the limitations of polymeric membranes by utilizing the "division of labor" between well-defined permeable pores and impermeable matrix molecules seen in biological membranes. We explore the exceptional performance of membranes in biological organisms, focusing on their two major components: membrane proteins (biological channels) and lipid matrix molecules. We then discuss how these natural materials can be replaced with artificial mimics for enhanced properties and how macro-scale BBMs are developed. We highlight key demonstrations in the field of BBMs that draw upon the factors responsible for transport through biological membranes. Additionally, current state-of-the-art methods for fabrication of BBMs are reviewed with potential challenges and prospects for future applications. Finally, we provide considerations for future research that could enable BBMs to progress toward scale-up and enhanced applicability.
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Affiliation(s)
- Hyeonji Oh
- McKetta Department of Chemical Engineering, University of Texas at Austin, Austin, Texas 78712, United States
| | - Laxmicharan Samineni
- Department of Civil and Environmental Engineering, Stanford University, Stanford, California 94305, United States
| | - Ronald J Vogler
- McKetta Department of Chemical Engineering, University of Texas at Austin, Austin, Texas 78712, United States
| | - Chenhao Yao
- McKetta Department of Chemical Engineering, University of Texas at Austin, Austin, Texas 78712, United States
| | - Harekrushna Behera
- Maseeh Department of Civil, Architectural and Environmental Engineering, University of Texas at Austin, Austin, Texas 78712, United States
| | - Raman Dhiman
- McKetta Department of Chemical Engineering, University of Texas at Austin, Austin, Texas 78712, United States
| | - Andreas Horner
- Institute of Biophysics, Johannes Kepler University Linz, Gruberstraße 40, 4020 Linz, Austria
| | - Manish Kumar
- McKetta Department of Chemical Engineering, University of Texas at Austin, Austin, Texas 78712, United States
- Maseeh Department of Civil, Architectural and Environmental Engineering, University of Texas at Austin, Austin, Texas 78712, United States
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3
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Zhang D, Chang W, Shen J, Zeng H. Aromatic foldamer-derived transmembrane transporters. Chem Commun (Camb) 2024; 60:13468-13491. [PMID: 39466066 DOI: 10.1039/d4cc04388j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/29/2024]
Abstract
This review is the first to focus on transmembrane transporters derived from aromatic foldamers, with most studies reported over the past decade. These foldamers have made significant strides in mimicking the essential functions of natural ion channel proteins. With their aromatic backbones rigidified by intramolecular hydrogen bonds or differential repulsive forces, this innovative family of molecules stands out for its structural diversity and functional adaptability. They achieve efficient and selective ion and molecule transport across lipid bilayers via carefully designed helical structures and tunable large cavities. Recent developments in this field highlight the transformative potential of foldamers in therapeutic applications and biomaterial engineering. Key advances include innovative molecular engineering strategies that enable highly selective ion transport by fine-tuning structural and functional attributes. Specific modifications to macrocyclic or helical foldamer structures have allowed precise control over ion selectivity and transport efficiency, with notable selectivity for K+, Li+, H+ and water molecules. Although challenges remain, future directions may focus on more innovative molecular designs, optimizing synthetic methods, improving membrane transport properties, integrating responsive designs that adapt to environmental stimuli, and fostering interdisciplinary collaborations. By emphasizing the pivotal role of aromatic foldamers in modern chemistry, this review aims to inspire further development, offering new molecular toolboxes and strategies to address technological and biological challenges in chemistry, biology, medicine, and materials science.
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Affiliation(s)
- Danyang Zhang
- College of Chemistry Fuzhou University Fuzhou, Fujian 350116, China.
| | - Wenju Chang
- College of Chemistry Fuzhou University Fuzhou, Fujian 350116, China.
| | - Jie Shen
- College of Chemistry Fuzhou University Fuzhou, Fujian 350116, China.
| | - Huaqiang Zeng
- College of Chemistry Fuzhou University Fuzhou, Fujian 350116, China.
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4
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Obewhere OA, Acurio-Cerda K, Sutradhar S, Dike M, Keloth R, Dishari SK. Unravel-engineer-design: a three-pronged approach to advance ionomer performance at interfaces in proton exchange membrane fuel cells. Chem Commun (Camb) 2024; 60:13114-13142. [PMID: 39356467 PMCID: PMC11560688 DOI: 10.1039/d4cc03221g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/03/2024]
Abstract
Proton exchange membrane fuel cells (PEMFCs), which use hydrogen as fuel, present an eco-friendly alternative to internal combustion engines (ICEs) for powering low-to-heavy-duty vehicles and various devices. Despite their promise, PEMFCs must meet strict cost, performance, and durability standards to reach their full potential. A key challenge lies in optimizing the electrode, where a thin ionomer layer is responsible for proton conduction and binding catalyst particles to the electrode. Enhancing ion transport within these sub-μm thick films is critical to improving the oxygen reduction reaction (ORR) at the cathodes of PEMFCs. For the past 15 years, our research has targeted this limitation through a comprehensive "Unravel - Engineer - Design" approach. We first unraveled the behavior of ionomers, gaining deeper insights into both the average and distributed proton conduction properties within sub-μm thick films and at interfaces that mimic catalyst binder layers. Next, we engineered ionomer-substrate interfaces to gain control over interfacial makeup and boost proton conductivity, essential for PEMFC efficiency. Finally, we designed novel nature-derived or nature-inspired, fluorine-free ionomers to tackle the ion transport limitations seen in state-of-the-art ionomers under thin-film confinement. Some of these ionomers even pave the way to address cost and sustainability challenges in PEMFC materials. This feature article highlights our contributions and their importance in advancing PEMFCs and other sustainable energy conversion and storage technologies.
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Affiliation(s)
| | - Karen Acurio-Cerda
- Department of Chemical and Biomolecular Engineering, University of Nebraska-Lincoln, Nebraska, USA.
| | - Sourav Sutradhar
- Department of Chemical and Biomolecular Engineering, University of Nebraska-Lincoln, Nebraska, USA.
| | - Moses Dike
- Department of Chemical and Biomolecular Engineering, University of Nebraska-Lincoln, Nebraska, USA.
| | - Rajesh Keloth
- Department of Chemical and Biomolecular Engineering, University of Nebraska-Lincoln, Nebraska, USA.
| | - Shudipto Konika Dishari
- Department of Chemical and Biomolecular Engineering, University of Nebraska-Lincoln, Nebraska, USA.
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5
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Petkova V, Anastasova D, Dobrev S, Mutovska M, Kircheva N, Nikolova V, Kolev SD, Stoyanov S, Zagranyarski Y, Dudev T, Angelova S. Naphthalimide-Based Amphiphiles: Synthesis and DFT Studies of the Aggregation and Interaction of a Simplified Model System with Water Molecules. Molecules 2024; 29:4204. [PMID: 39275051 PMCID: PMC11397715 DOI: 10.3390/molecules29174204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2024] [Revised: 08/27/2024] [Accepted: 09/02/2024] [Indexed: 09/16/2024] Open
Abstract
Systems containing amphiphilic/pathic molecules have the tremendous capacity to self-assemble under appropriate conditions to form morphologies with well-defined structural order (systematic arrangement), nanometer-scale dimensions, and unique properties. In this work, the synthesis of novel naphthalimide-based amphiphilic probes that have 1,8-naphthalimide as the fluorescence signal reporting group, octyl as hydrophobic head, and PEG as hydrophilic tail, is described. These designed molecules represent a new class of self-assembling structures with some promising features. The lack of literature data on the use of 1,8-naphthalimides with cyclic and acyclic hydrophilic PEG fragments as self-assembling structures gives us the opportunity to initiate a new field in materials science. The successful synthesis of such structures is fundamental to synthetic chemistry, and computational studies of the aggregation and binding of water molecules shed light on the ability of these new systems to function as membrane water channels. This study not only expands the list of 1,8-naphthalimide derivatives but may also serve as a new platform for the development of membrane additives based on PEG-functionalized naphthalimides.
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Affiliation(s)
- Vladislava Petkova
- Institute of Optical Materials and Technologies "Acad. J. Malinowski", Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria
| | - Denitsa Anastasova
- Faculty of Chemistry and Pharmacy, Sofia University "St. Kliment Ohridski", 1164 Sofia, Bulgaria
| | - Stefan Dobrev
- Institute of Optical Materials and Technologies "Acad. J. Malinowski", Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria
| | - Monika Mutovska
- Faculty of Chemistry and Pharmacy, Sofia University "St. Kliment Ohridski", 1164 Sofia, Bulgaria
| | - Nikoleta Kircheva
- Institute of Optical Materials and Technologies "Acad. J. Malinowski", Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria
| | - Valya Nikolova
- Faculty of Chemistry and Pharmacy, Sofia University "St. Kliment Ohridski", 1164 Sofia, Bulgaria
| | - Spas D Kolev
- Faculty of Chemistry and Pharmacy, Sofia University "St. Kliment Ohridski", 1164 Sofia, Bulgaria
- Department of Chemical Engineering, School of Chemistry, The University of Melbourne, Melbourne, VIC 3010, Australia
| | - Stanimir Stoyanov
- Faculty of Chemistry and Pharmacy, Sofia University "St. Kliment Ohridski", 1164 Sofia, Bulgaria
| | - Yulian Zagranyarski
- Faculty of Chemistry and Pharmacy, Sofia University "St. Kliment Ohridski", 1164 Sofia, Bulgaria
| | - Todor Dudev
- Faculty of Chemistry and Pharmacy, Sofia University "St. Kliment Ohridski", 1164 Sofia, Bulgaria
| | - Silvia Angelova
- Institute of Optical Materials and Technologies "Acad. J. Malinowski", Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria
- University of Chemical Technology and Metallurgy, 8 St. Kliment Ohridski Blvd, 1756 Sofia, Bulgaria
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6
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Andrei IM, Strilets D, Fa S, Baaden M, Ogoshi T, Barboiu M. Combinatorial Screening of Water/Proton Permeation of Self-Assembled Pillar[5]arene Artificial Water Channel Libraries. Angew Chem Int Ed Engl 2023; 62:e202310812. [PMID: 37610532 DOI: 10.1002/anie.202310812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 08/22/2023] [Accepted: 08/23/2023] [Indexed: 08/24/2023]
Abstract
Artificial water channels (AWCs) that selectively transport water and reject ions through bilayer membranes have potential to act as synthetic Aquaporins (AQPs). AWCs can have a similar osmotic permeability, better stability, with simpler manufacture on a larger-scale and have higher functional density and surface permeability when inserted into the membrane. Here, we report the screening of combinatorial libraries of symmetrical and unsymmetrical rim-functionalized PAs A-D that are able to transport ca. 107 -108 water molecules/s/channel, which is within 1 order of magnitude of AQPs' and show total ion and proton rejection. Among the four channels, C and D are 3-4 times more water permeable than A and B when inserted in bilayer membranes. The binary combinations of A-D with different molar ratios could be expressed as an independent (linear ABA), a recessive (inhibition AB, AC, DB, ACA), or a dominant (amplification, DBD) behavior of the water net permeation events.
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Affiliation(s)
- Iuliana-Marilena Andrei
- Institut Europeen des Membranes, Adaptative Supramolecular Nanosystems Group, University of Montpellier, ENSCM-CNRS, Place E. Bataillon CC047, 34095, Montpellier, France
| | - Dmytro Strilets
- Institut Europeen des Membranes, Adaptative Supramolecular Nanosystems Group, University of Montpellier, ENSCM-CNRS, Place E. Bataillon CC047, 34095, Montpellier, France
| | - Shixin Fa
- Department of Synthetic Chemistry and Biological Chemistry Graduate School of Engineering, Kyoto University Katsura, Nishikyo-ku, Kyoto, 615-8510, Japan
| | - Marc Baaden
- Université Paris Cité, CNRS, Laboratoire de Biochimie Théorique, 13 rue Pierre et Marie Curie, 75005, Paris, France
| | - Tomoki Ogoshi
- Department of Synthetic Chemistry and Biological Chemistry Graduate School of Engineering, Kyoto University Katsura, Nishikyo-ku, Kyoto, 615-8510, Japan
- WPI Nano Life Science Institute, Kanazawa University Kakuma-machi, Kanazawa, 920-1192, Japan
| | - Mihail Barboiu
- Institut Europeen des Membranes, Adaptative Supramolecular Nanosystems Group, University of Montpellier, ENSCM-CNRS, Place E. Bataillon CC047, 34095, Montpellier, France
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7
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Aluru NR, Aydin F, Bazant MZ, Blankschtein D, Brozena AH, de Souza JP, Elimelech M, Faucher S, Fourkas JT, Koman VB, Kuehne M, Kulik HJ, Li HK, Li Y, Li Z, Majumdar A, Martis J, Misra RP, Noy A, Pham TA, Qu H, Rayabharam A, Reed MA, Ritt CL, Schwegler E, Siwy Z, Strano MS, Wang Y, Yao YC, Zhan C, Zhang Z. Fluids and Electrolytes under Confinement in Single-Digit Nanopores. Chem Rev 2023; 123:2737-2831. [PMID: 36898130 PMCID: PMC10037271 DOI: 10.1021/acs.chemrev.2c00155] [Citation(s) in RCA: 40] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2023]
Abstract
Confined fluids and electrolyte solutions in nanopores exhibit rich and surprising physics and chemistry that impact the mass transport and energy efficiency in many important natural systems and industrial applications. Existing theories often fail to predict the exotic effects observed in the narrowest of such pores, called single-digit nanopores (SDNs), which have diameters or conduit widths of less than 10 nm, and have only recently become accessible for experimental measurements. What SDNs reveal has been surprising, including a rapidly increasing number of examples such as extraordinarily fast water transport, distorted fluid-phase boundaries, strong ion-correlation and quantum effects, and dielectric anomalies that are not observed in larger pores. Exploiting these effects presents myriad opportunities in both basic and applied research that stand to impact a host of new technologies at the water-energy nexus, from new membranes for precise separations and water purification to new gas permeable materials for water electrolyzers and energy-storage devices. SDNs also present unique opportunities to achieve ultrasensitive and selective chemical sensing at the single-ion and single-molecule limit. In this review article, we summarize the progress on nanofluidics of SDNs, with a focus on the confinement effects that arise in these extremely narrow nanopores. The recent development of precision model systems, transformative experimental tools, and multiscale theories that have played enabling roles in advancing this frontier are reviewed. We also identify new knowledge gaps in our understanding of nanofluidic transport and provide an outlook for the future challenges and opportunities at this rapidly advancing frontier.
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Affiliation(s)
- Narayana R Aluru
- Oden Institute for Computational Engineering and Sciences, Walker Department of Mechanical Engineering, The University of Texas at Austin, Austin, 78712TexasUnited States
| | - Fikret Aydin
- Materials Science Division, Physical and Life Science Directorate, Lawrence Livermore National Laboratory, Livermore, California94550, United States
| | - Martin Z Bazant
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
- Department of Mathematics, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Daniel Blankschtein
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Alexandra H Brozena
- Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland20742, United States
| | - J Pedro de Souza
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Menachem Elimelech
- Department of Chemical and Environmental Engineering, Yale University, New Haven, Connecticut06520-8286, United States
| | - Samuel Faucher
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - John T Fourkas
- Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland20742, United States
- Institute for Physical Science and Technology, University of Maryland, College Park, Maryland20742, United States
- Maryland NanoCenter, University of Maryland, College Park, Maryland20742, United States
| | - Volodymyr B Koman
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Matthias Kuehne
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Heather J Kulik
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Hao-Kun Li
- Department of Mechanical Engineering, Stanford University, Stanford, California94305, United States
| | - Yuhao Li
- Materials Science Division, Physical and Life Science Directorate, Lawrence Livermore National Laboratory, Livermore, California94550, United States
| | - Zhongwu Li
- Materials Science Division, Physical and Life Science Directorate, Lawrence Livermore National Laboratory, Livermore, California94550, United States
| | - Arun Majumdar
- Department of Mechanical Engineering, Stanford University, Stanford, California94305, United States
| | - Joel Martis
- Department of Mechanical Engineering, Stanford University, Stanford, California94305, United States
| | - Rahul Prasanna Misra
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Aleksandr Noy
- Materials Science Division, Physical and Life Science Directorate, Lawrence Livermore National Laboratory, Livermore, California94550, United States
- School of Natural Sciences, University of California Merced, Merced, California95344, United States
| | - Tuan Anh Pham
- Materials Science Division, Physical and Life Science Directorate, Lawrence Livermore National Laboratory, Livermore, California94550, United States
| | - Haoran Qu
- Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland20742, United States
| | - Archith Rayabharam
- Oden Institute for Computational Engineering and Sciences, Walker Department of Mechanical Engineering, The University of Texas at Austin, Austin, 78712TexasUnited States
| | - Mark A Reed
- Department of Electrical Engineering, Yale University, 15 Prospect Street, New Haven, Connecticut06520, United States
| | - Cody L Ritt
- Department of Chemical and Environmental Engineering, Yale University, New Haven, Connecticut06520-8286, United States
| | - Eric Schwegler
- Materials Science Division, Physical and Life Science Directorate, Lawrence Livermore National Laboratory, Livermore, California94550, United States
| | - Zuzanna Siwy
- Department of Physics and Astronomy, Department of Chemistry, Department of Biomedical Engineering, University of California, Irvine, Irvine92697, United States
| | - Michael S Strano
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - YuHuang Wang
- Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland20742, United States
- Maryland NanoCenter, University of Maryland, College Park, Maryland20742, United States
| | - Yun-Chiao Yao
- Materials Science Division, Physical and Life Science Directorate, Lawrence Livermore National Laboratory, Livermore, California94550, United States
- School of Natural Sciences, University of California Merced, Merced, California95344, United States
| | - Cheng Zhan
- Materials Science Division, Physical and Life Science Directorate, Lawrence Livermore National Laboratory, Livermore, California94550, United States
| | - Ze Zhang
- Department of Mechanical Engineering, Stanford University, Stanford, California94305, United States
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8
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Biophysical quantification of unitary solute and solvent permeabilities to enable translation to membrane science. J Memb Sci 2022. [DOI: 10.1016/j.memsci.2022.121308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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9
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Mondal D, Dandekar BR, Ahmad M, Mondal A, Mondal J, Talukdar P. Selective and rapid water transportation across a self-assembled peptide-diol channel via the formation of a dual water array. Chem Sci 2022; 13:9614-9623. [PMID: 36091906 PMCID: PMC9400608 DOI: 10.1039/d2sc01737g] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2022] [Accepted: 07/20/2022] [Indexed: 11/21/2022] Open
Abstract
Achieving superfast water transport by using synthetically designed molecular artifacts, which exclude salts and protons, is a challenging task in separation science today, as it requires the concomitant presence of a proper water-binding site and necessary selectivity filter for transporting water. Here, we demonstrate the water channel behavior of two configurationally different peptide diol isomers that mimic the natural water channel system, i.e., aquaporins. The solid-state morphology studies showed the formation of a self-assembled aggregated structure, and X-ray crystal structure analysis confirmed the formation of a nanotubular assembly that comprises two distinct water channels. The water permeabilities of all six compounds were evaluated and are found to transport water by excluding salts and protons with a water permeability rate of 5.05 × 108 water molecules per s per channel, which is around one order of magnitude less than the water permeability rate of aquaporins. MD simulation studies showed that the system forms a stable water channel inside the bilayer membrane under ambient conditions, with a 2 × 8 layered assembly, and efficiently transports water molecules by forming two distinct water arrays within the channel.
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Affiliation(s)
- Debashis Mondal
- Department of Chemistry, Indian Institute of Science Education and Research Pune Dr Homi Bhabha Road, Pashan Pune 411008 Maharashtra India
| | - Bhupendra R Dandekar
- Center for Interdisciplinary Sciences, Tata Institute of Fundamental Research Hyderabad 500046 Telangana India
| | - Manzoor Ahmad
- Department of Chemistry, Indian Institute of Science Education and Research Pune Dr Homi Bhabha Road, Pashan Pune 411008 Maharashtra India
| | - Abhishek Mondal
- Department of Chemistry, Indian Institute of Science Education and Research Pune Dr Homi Bhabha Road, Pashan Pune 411008 Maharashtra India
| | - Jagannath Mondal
- Center for Interdisciplinary Sciences, Tata Institute of Fundamental Research Hyderabad 500046 Telangana India
| | - Pinaki Talukdar
- Department of Chemistry, Indian Institute of Science Education and Research Pune Dr Homi Bhabha Road, Pashan Pune 411008 Maharashtra India
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10
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Song W, Kumar M. Beyond Aquaporins: Recent Developments in Artificial Water Channels. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:9085-9091. [PMID: 35862878 DOI: 10.1021/acs.langmuir.2c01605] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
A molecular scale understanding of the fast and selective water transport in biological water channels, aquaporins (AQPs), has inspired attempts to mimic its performance in synthetic structures. These synthetic structures, referred to as artificial water channels (AWCs), present several advantages over AQPs in applications. After over a decade of efforts, the unique transport properties of AQPs have been reproduced in AWCs. Further, recent developments have shown that the performance of benchmark AQP channels can be exceeded by new AWC designs using novel features not seen in biology. In this Perspective, we provide a brief overview of recent AWC developments, and share our perspective on forward-looking AWC research.
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Affiliation(s)
- Woochul Song
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Manish Kumar
- Department of Civil, Architectural and Environmental Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
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11
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Gössweiner-Mohr N, Siligan C, Pluhackova K, Umlandt L, Koefler S, Trajkovska N, Horner A. The Hidden Intricacies of Aquaporins: Remarkable Details in a Common Structural Scaffold. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2022; 18:e2202056. [PMID: 35802902 DOI: 10.1002/smll.202202056] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Revised: 06/09/2022] [Indexed: 06/15/2023]
Abstract
Evolution turned aquaporins (AQPs) into the most efficient facilitators of passive water flow through cell membranes at no expense of solute discrimination. In spite of a plethora of solved AQP structures, many structural details remain hidden. Here, by combining extensive sequence- and structural-based analysis of a unique set of 20 non-redundant high-resolution structures and molecular dynamics simulations of four representatives, key aspects of AQP stability, gating, selectivity, pore geometry, and oligomerization, with a potential impact on channel functionality, are identified. The general view of AQPs possessing a continuous open water pore is challenged and it is depicted that AQPs' selectivity is not exclusively shaped by pore-lining residues but also by the relative arrangement of transmembrane helices. Moreover, this analysis reveals that hydrophobic interactions constitute the main determinant of protein thermal stability. Finally, a numbering scheme of the conserved AQP scaffold is established, facilitating direct comparison of, for example, disease-causing mutations and prediction of potential structural consequences. Additionally, the results pave the way for the design of optimized AQP water channels to be utilized in biotechnological applications.
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Affiliation(s)
| | - Christine Siligan
- Institute of Biophysics, Johannes Kepler University Linz, Gruberstr. 40, Linz, 4020, Austria
| | - Kristyna Pluhackova
- Stuttgart Center for Simulation Science, University of Stuttgart, Cluster of Excellence EXC 2075, Universitätsstr. 32, 70569, Stuttgart, Germany
| | - Linnea Umlandt
- Institute of Biophysics, Johannes Kepler University Linz, Gruberstr. 40, Linz, 4020, Austria
| | - Sabina Koefler
- Institute of Biophysics, Johannes Kepler University Linz, Gruberstr. 40, Linz, 4020, Austria
| | - Natasha Trajkovska
- Institute of Biophysics, Johannes Kepler University Linz, Gruberstr. 40, Linz, 4020, Austria
| | - Andreas Horner
- Institute of Biophysics, Johannes Kepler University Linz, Gruberstr. 40, Linz, 4020, Austria
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12
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Shen J, Roy A, Joshi H, Samineni L, Ye R, Tu YM, Song W, Skiles M, Kumar M, Aksimentiev A, Zeng H. Fluorofoldamer-Based Salt- and Proton-Rejecting Artificial Water Channels for Ultrafast Water Transport. NANO LETTERS 2022; 22:4831-4838. [PMID: 35674810 DOI: 10.1021/acs.nanolett.2c01137] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Here, we report on a novel class of fluorofoldamer-based artificial water channels (AWCs) that combines excellent water transport rate and selectivity with structural simplicity and robustness. Produced by a facile one-pot copolymerization reaction under mild conditions, the best-performing channel (AWC 1) is an n-C8H17-decorated foldamer nanotube with an average channel length of 2.8 nm and a pore diameter of 5.2 Å. AWC 1 demonstrates an ultrafast water conduction rate of 1.4 × 1010 H2O/s per channel, outperforming the archetypal biological water channel, aquaporin 1, while excluding salts (i.e., NaCl and KCl) and protons. Unique to this class of channels, the inwardly facing C(sp2)-F atoms being the most electronegative in the periodic table are proposed as being critical to enabling the ultrafast and superselective water transport properties by decreasing the channel's cavity and enhancing the channel wall smoothness via reducing intermolecular forces with water molecules or hydrated ions.
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Affiliation(s)
- Jie Shen
- School of Chemistry and Chemical Engineering, Northwestern Polytechnical University, Xi'an, Shaanxi 710072, China
| | - Arundhati Roy
- Department of Pharmacy, Ludwig Maximilian University Munich Butenandtstraße 5-13, Munich 81377, Germany
| | - Himanshu Joshi
- Department of Physics and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Laxmicharan Samineni
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Ruijuan Ye
- School of Chemistry and Chemical Engineering, Northwestern Polytechnical University, Xi'an, Shaanxi 710072, China
| | - Yu-Ming Tu
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Woochul Song
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Matthew Skiles
- Department of Civil, Architectural and Environmental Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Manish Kumar
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
- Department of Civil, Architectural and Environmental Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Aleksei Aksimentiev
- Department of Physics and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Huaqiang Zeng
- School of Chemistry and Chemical Engineering, Northwestern Polytechnical University, Xi'an, Shaanxi 710072, China
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13
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The Unexpected Helical Supramolecular Assembly of a Simple Achiral Acetamide Tecton Generates Selective Water Channels. Chemistry 2022; 28:e202200383. [DOI: 10.1002/chem.202200383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Indexed: 11/07/2022]
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14
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Chatterjee S, Zamani E, Farzin S, Evazzade I, Obewhere OA, Johnson TJ, Alexandrov V, Dishari SK. Molecular-Level Control over Ionic Conduction and Ionic Current Direction by Designing Macrocycle-Based Ionomers. JACS AU 2022; 2:1144-1159. [PMID: 35647599 PMCID: PMC9131371 DOI: 10.1021/jacsau.2c00143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Revised: 04/22/2022] [Accepted: 04/28/2022] [Indexed: 06/15/2023]
Abstract
Poor ionic conductivity of the catalyst-binding, sub-micrometer-thick ionomer layers in energy conversion and storage devices is a huge challenge. However, ionomers are rarely designed keeping in mind the specific issues associated with nanoconfinement. Here, we designed nature-inspired ionomers (calix-2) having hollow, macrocyclic, calix[4]arene-based repeat units with precise, sub-nanometer diameter. In ≤100 nm-thick films, the in-plane proton conductivity of calix-2 was up to 8 times higher than the current benchmark ionomer Nafion at 85% relative humidity (RH), while it was 1-2 orders of magnitude higher than Nafion at 20-25% RH. Confocal laser scanning microscopy and other synthetic techniques allowed us to demonstrate the role of macrocyclic cavities in boosting the proton conductivity. The systematic self-assembly of calix-2 chains into ellipsoids in thin films was evidenced from atomic force microscopy and grazing incidence small-angle X-ray scattering measurements. Moreover, the likelihood of alignment and stacking of macrocyclic units, the presence of one-dimensional water wires across this macrocycle stacks, and thus the formation of long-range proton conduction pathways were suggested by atomistic simulations. We not only did see an unprecedented improvement in thin-film proton conductivity but also saw an improvement in proton conductivity of bulk membranes when calix-2 was added to the Nafion matrices. Nafion-calix-2 composite membranes also took advantage of the asymmetric charge distribution across calix[4]arene repeat units collectively and exhibited voltage-gating behavior. The inclusion of molecular macrocyclic cavities into the ionomer chemical structure can thus emerge as a promising design concept for highly efficient ion-conducting and ion-permselective materials for sustainable energy applications.
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Affiliation(s)
| | | | | | - Iman Evazzade
- Department of Chemical and Biomolecular
Engineering, University of Nebraska−Lincoln, Lincoln 68588, Nebraska, United States
| | - Oghenetega Allen Obewhere
- Department of Chemical and Biomolecular
Engineering, University of Nebraska−Lincoln, Lincoln 68588, Nebraska, United States
| | - Tyler James Johnson
- Department of Chemical and Biomolecular
Engineering, University of Nebraska−Lincoln, Lincoln 68588, Nebraska, United States
| | - Vitaly Alexandrov
- Department of Chemical and Biomolecular
Engineering, University of Nebraska−Lincoln, Lincoln 68588, Nebraska, United States
| | - Shudipto Konika Dishari
- Department of Chemical and Biomolecular
Engineering, University of Nebraska−Lincoln, Lincoln 68588, Nebraska, United States
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15
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Itoh Y, Chen S, Hirahara R, Konda T, Aoki T, Ueda T, Shimada I, Cannon JJ, Shao C, Shiomi J, Tabata KV, Noji H, Sato K, Aida T. Ultrafast water permeation through nanochannels with a densely fluorous interior surface. Science 2022; 376:738-743. [PMID: 35549437 DOI: 10.1126/science.abd0966] [Citation(s) in RCA: 47] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Ultrafast water permeation in aquaporins is promoted by their hydrophobic interior surface. Polytetrafluoroethylene has a dense fluorine surface, leading to its strong water repellence. We report a series of fluorous oligoamide nanorings with interior diameters ranging from 0.9 to 1.9 nanometers. These nanorings undergo supramolecular polymerization in phospholipid bilayer membranes to form fluorous nanochannels, the interior walls of which are densely covered with fluorine atoms. The nanochannel with the smallest diameter exhibits a water permeation flux that is two orders of magnitude greater than those of aquaporins and carbon nanotubes. The proposed nanochannel exhibits negligible chloride ion (Cl-) permeability caused by a powerful electrostatic barrier provided by the electrostatically negative fluorous interior surface. Thus, this nanochannel is expected to show nearly perfect salt reflectance for desalination.
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Affiliation(s)
- Yoshimitsu Itoh
- Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan.,Japan Science and Technology Agency (JST), Precursory Research for Embryonic Science and Technology (PRESTO), 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan
| | - Shuo Chen
- Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Ryota Hirahara
- Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Takeshi Konda
- Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Tsubasa Aoki
- Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Takumi Ueda
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Ichio Shimada
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.,RIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
| | - James J Cannon
- Department of Mechanical Engineering, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan.,Department of Mechanical Engineering, Faculty of Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Cheng Shao
- Department of Mechanical Engineering, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Junichiro Shiomi
- Department of Mechanical Engineering, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Kazuhito V Tabata
- Department of Applied Chemistry, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Hiroyuki Noji
- Department of Applied Chemistry, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Kohei Sato
- Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Takuzo Aida
- Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan.,RIKEN Center for Emergent Matter Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
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16
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Shen Y. Beating natural proteins at filtering water. Science 2022; 376:698-699. [PMID: 35549431 DOI: 10.1126/science.abo2953] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Artificial fluorous channels outperform aquaporins in water permeation.
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Affiliation(s)
- Yuexiao Shen
- Department of Civil, Environmental, and Construction Engineering, Texas Tech University, Lubbock, TX 79409, USA
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17
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Mejri A, Mazouzi K, Herlem G, Picaud F, Hennequin T, Palmeri J, Manghi M. Molecular dynamics investigations of ionic conductance at the nanoscale: Role of the water model and geometric parameters. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.118575] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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18
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Shen Y, Fei F, Zhong Y, Fan C, Sun J, Hu J, Gong B, Czajkowsky DM, Shao Z. Controlling Water Flow through a Synthetic Nanopore with Permeable Cations. ACS CENTRAL SCIENCE 2021; 7:2092-2098. [PMID: 34963901 PMCID: PMC8704043 DOI: 10.1021/acscentsci.1c01218] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Indexed: 05/19/2023]
Abstract
There is presently intense interest in the development of synthetic nanopores that recapitulate the functional properties of biological water channels for a wide range of applications. To date, all known synthetic water channels have a hydrophobic lumen, and while many exhibit a comparable rate of water transport as biological water channels, there is presently no rationally designed system with the ability to regulate water transport, a critical property of many natural water channels. Here, we describe a self-assembling nanopore consisting of stacked macrocyclic molecules with a hybrid hydrophilic/hydrophobic lumen exhibiting water transport that can be regulated by alkali metal ions. Stopped-flow kinetic assays reveal a non-monotonic-dependence of transport on cation size as well as a strikingly broad range of water flow, from essentially none in the presence of the sodium ion to as high a flow as that of the biological water channel, aquaporin 1, in the absence of the cations. All-atom molecular dynamics simulations show that the mechanism underlying the observed sensitivity is the binding of cations to defined sites within this hybrid pore, which perturbs water flow through the channel. Thus, beyond revealing insights into factors that can modulate a high-flux water transport through sub-nm pores, the obtained results provide a proof-of-concept for the rational design of next-generation, controllable synthetic water channels.
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Affiliation(s)
- Yi Shen
- School
of Biomedical Engineering, Shanghai Jiao
Tong University, Shanghai 200240, China
| | - Fan Fei
- School
of Biomedical Engineering, Shanghai Jiao
Tong University, Shanghai 200240, China
| | - Yulong Zhong
- Department
of Chemistry, The State University of New
York at Buffalo, Buffalo, New York 14260, United States
| | - Chunhai Fan
- School
of Chemistry and Chemical Engineering, Shanghai
Jiao Tong University, Shanghai 200240, China
| | - Jielin Sun
- Shanghai
Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine
(Ministry of Education), Shanghai Jiao Tong
University, Shanghai 200240, China
| | - Jun Hu
- Key
Laboratory of Interfacial Physics and Technology, Shanghai Synchrotron
Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201204, China
| | - Bing Gong
- Department
of Chemistry, The State University of New
York at Buffalo, Buffalo, New York 14260, United States
| | - Daniel M. Czajkowsky
- School
of Biomedical Engineering, Shanghai Jiao
Tong University, Shanghai 200240, China
| | - Zhifeng Shao
- School
of Biomedical Engineering, Shanghai Jiao
Tong University, Shanghai 200240, China
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19
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Pfeffermann J, Goessweiner-Mohr N, Pohl P. The energetic barrier to single-file water flow through narrow channels. Biophys Rev 2021; 13:913-923. [PMID: 35035593 PMCID: PMC8724168 DOI: 10.1007/s12551-021-00875-w] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Accepted: 10/26/2021] [Indexed: 10/30/2022] Open
Abstract
Various nanoscopic channels of roughly equal diameter and length facilitate single-file diffusion at vastly different rates. The underlying variance of the energetic barriers to transport is poorly understood. First, water partitioning into channels so narrow that individual molecules cannot overtake each other incurs an energetic penalty. Corresponding estimates vary widely depending on how the sacrifice of two out of four hydrogen bonds is accounted for. Second, entropy differences between luminal and bulk water may arise: additional degrees of freedom caused by dangling OH-bonds increase entropy. At the same time, long-range dipolar water interactions decrease entropy. Here, we dissect different contributions to Gibbs free energy of activation, ΔG ‡, for single-file water transport through narrow channels by analyzing experimental results from water permeability measurements on both bare lipid bilayers and biological water channels that (i) consider unstirred layer effects and (ii) adequately count the channels in reconstitution experiments. First, the functional relationship between water permeabilities and Arrhenius activation energies indicates negligible differences between the entropies of intraluminal water and bulk water. Second, we calculate ΔG ‡ from unitary water channel permeabilities using transition state theory. Plotting ΔG ‡ as a function of the number of H-bond donating or accepting pore-lining residues results in a 0.1 kcal/mol contribution per residue. The resulting upper limit for partial water dehydration amounts to 2 kcal/mol. In the framework of biomimicry, our analysis provides valuable insights for the design of synthetic water channels. It thus may aid in the urgent endeavor towards combating global water scarcity.
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Affiliation(s)
| | | | - Peter Pohl
- Institute of Biophysics, Johannes Kepler University Linz, Linz, Austria
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20
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Ashashi NA, Kumar M, ul Nisa Z, Frontera A, Sahoo SC, Sheikh HN. Solvothermal self assembly of three lanthanide(III)-succinates: Crystal structure, topological analysis and DFT calculations on water channel. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.131094] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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21
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22
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Zhao WJ, Liang L, Kong Z, Shen JW. A review on desalination by graphene-based biomimetic nanopore: From the computational modelling perspective. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.117582] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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23
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Roy A, Shen J, Joshi H, Song W, Tu YM, Chowdhury R, Ye R, Li N, Ren C, Kumar M, Aksimentiev A, Zeng H. Foldamer-based ultrapermeable and highly selective artificial water channels that exclude protons. NATURE NANOTECHNOLOGY 2021; 16:911-917. [PMID: 34017100 DOI: 10.1038/s41565-021-00915-2] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Accepted: 04/06/2021] [Indexed: 06/12/2023]
Abstract
The outstanding capacity of aquaporins (AQPs) for mediating highly selective superfast water transport1-7 has inspired recent development of supramolecular monovalent ion-excluding artificial water channels (AWCs). AWC-based bioinspired membranes are proposed for desalination, water purification and other separation applications8-18. While some recent progress has been made in synthesizing AWCs that approach the water permeability and ion selectivity of AQPs, a hallmark feature of AQPs-high water transport while excluding protons-has not been reproduced. We report a class of biomimetic, helically folded pore-forming polymeric foldamers that can serve as long-sought-after highly selective ultrafast water-conducting channels with performance exceeding those of AQPs (1.1 × 1010 water molecules per second for AQP1), with high water-over-monovalent-ion transport selectivity (~108 water molecules over Cl- ion) conferred by the modularly tunable hydrophobicity of the interior pore surface. The best-performing AWC reported here delivers water transport at an exceptionally high rate, namely, 2.5 times that of AQP1, while concurrently rejecting salts (NaCl and KCl) and even protons.
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Affiliation(s)
- Arundhati Roy
- Department of Chemistry, College of Science, Hainan University, Haikou, Hainan, China
- NanoBio Lab, 31 Biopolis Way, The Nanos, Singapore
| | - Jie Shen
- Department of Chemistry, College of Science, Hainan University, Haikou, Hainan, China
| | - Himanshu Joshi
- Department of Physics and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Woochul Song
- Department of Chemical Engineering, The University of Texas at Austin, Austin, TX, USA
| | - Yu-Ming Tu
- Department of Chemical Engineering, The University of Texas at Austin, Austin, TX, USA
| | - Ratul Chowdhury
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA
| | - Ruijuan Ye
- Department of Chemistry, College of Science, Hainan University, Haikou, Hainan, China
| | - Ning Li
- NanoBio Lab, 31 Biopolis Way, The Nanos, Singapore
| | | | - Manish Kumar
- Department of Civil, Architectural and Environmental Engineering, The University of Texas at Austin, Austin, TX, USA
| | - Aleksei Aksimentiev
- Department of Physics and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Huaqiang Zeng
- Department of Chemistry, College of Science, Hainan University, Haikou, Hainan, China.
- Institute of Advanced Synthesis, Northwestern Polytechnical University, Xi'an, Shaanxi, China.
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24
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Abstract
A nature-inspired solution (NIS) methodology is proposed as a systematic platform for innovation and to inform transformative technology required to address Grand Challenges, including sustainable development. Scalability, efficiency, and resilience are essential to nature, as they are to engineering processes. They are achieved through underpinning fundamental mechanisms, which are grouped as recurring themes in the NIS approach: hierarchical transport networks, force balancing, dynamic self-organization, and ecosystem properties. To leverage these universal mechanisms, and incorporate them effectively into engineering design, adaptations may be needed to accommodate the different contexts of nature and engineering applications. Nature-inspired chemical engineering takes advantage of the NIS methodology for process intensification, as demonstrated here in fluidization, catalysis, fuel cell engineering, and membrane separations, where much higher performance is achieved by rigorously employing concepts optimized in nature. The same approach lends itself to other applications, from biomedical engineering to information technology and architecture.
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Affiliation(s)
- Marc-Olivier Coppens
- Department of Chemical Engineering and Centre for Nature-Inspired Engineering, University College London, London WC1E 7JE, United Kingdom;
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25
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Tu YM, Samineni L, Ren T, Schantz AB, Song W, Sharma S, Kumar M. Prospective applications of nanometer-scale pore size biomimetic and bioinspired membranes. J Memb Sci 2021. [DOI: 10.1016/j.memsci.2020.118968] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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26
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Lynch C, Rao S, Sansom MSP. Water in Nanopores and Biological Channels: A Molecular Simulation Perspective. Chem Rev 2020; 120:10298-10335. [PMID: 32841020 PMCID: PMC7517714 DOI: 10.1021/acs.chemrev.9b00830] [Citation(s) in RCA: 95] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Indexed: 12/18/2022]
Abstract
This Review explores the dynamic behavior of water within nanopores and biological channels in lipid bilayer membranes. We focus on molecular simulation studies, alongside selected structural and other experimental investigations. Structures of biological nanopores and channels are reviewed, emphasizing those high-resolution crystal structures, which reveal water molecules within the transmembrane pores, which can be used to aid the interpretation of simulation studies. Different levels of molecular simulations of water within nanopores are described, with a focus on molecular dynamics (MD). In particular, models of water for MD simulations are discussed in detail to provide an evaluation of their use in simulations of water in nanopores. Simulation studies of the behavior of water in idealized models of nanopores have revealed aspects of the organization and dynamics of nanoconfined water, including wetting/dewetting in narrow hydrophobic nanopores. A survey of simulation studies in a range of nonbiological nanopores is presented, including carbon nanotubes, synthetic nanopores, model peptide nanopores, track-etched nanopores in polymer membranes, and hydroxylated and functionalized nanoporous silica. These reveal a complex relationship between pore size/geometry, the nature of the pore lining, and rates of water transport. Wider nanopores with hydrophobic linings favor water flow whereas narrower hydrophobic pores may show dewetting. Simulation studies over the past decade of the behavior of water in a range of biological nanopores are described, including porins and β-barrel protein nanopores, aquaporins and related polar solute pores, and a number of different classes of ion channels. Water is shown to play a key role in proton transport in biological channels and in hydrophobic gating of ion channels. An overall picture emerges, whereby the behavior of water in a nanopore may be predicted as a function of its hydrophobicity and radius. This informs our understanding of the functions of diverse channel structures and will aid the design of novel nanopores. Thus, our current level of understanding allows for the design of a nanopore which promotes wetting over dewetting or vice versa. However, to design a novel nanopore, which enables fast, selective, and gated flow of water de novo would remain challenging, suggesting a need for further detailed simulations alongside experimental evaluation of more complex nanopore systems.
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Affiliation(s)
- Charlotte
I. Lynch
- Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, U.K.
| | - Shanlin Rao
- Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, U.K.
| | - Mark S. P. Sansom
- Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, U.K.
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27
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Zheng S, Huang L, Sun Z, Barboiu M. Self‐Assembled Artificial Ion‐Channels toward Natural Selection of Functions. Angew Chem Int Ed Engl 2020; 60:566-597. [DOI: 10.1002/anie.201915287] [Citation(s) in RCA: 63] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2019] [Indexed: 12/31/2022]
Affiliation(s)
- Shao‐Ping Zheng
- Lehn Institute of Functional Materials School of Chemistry Sun Yat-Sen University Guangzhou 510275 China
- Institut Europeen des Membranes Adaptive Supramolecular Nanosystems Group University of Montpellier ENSCM-CNRS Place E. Bataillon CC047 34095 Montpellier France
| | - Li‐Bo Huang
- Lehn Institute of Functional Materials School of Chemistry Sun Yat-Sen University Guangzhou 510275 China
- Institut Europeen des Membranes Adaptive Supramolecular Nanosystems Group University of Montpellier ENSCM-CNRS Place E. Bataillon CC047 34095 Montpellier France
| | - Zhanhu Sun
- Institut Europeen des Membranes Adaptive Supramolecular Nanosystems Group University of Montpellier ENSCM-CNRS Place E. Bataillon CC047 34095 Montpellier France
| | - Mihail Barboiu
- Lehn Institute of Functional Materials School of Chemistry Sun Yat-Sen University Guangzhou 510275 China
- Institut Europeen des Membranes Adaptive Supramolecular Nanosystems Group University of Montpellier ENSCM-CNRS Place E. Bataillon CC047 34095 Montpellier France
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28
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Zheng S, Huang L, Sun Z, Barboiu M. Selbstorganisierte künstliche Ionenkanäle für die natürliche Selektion von Funktionen. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201915287] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Shao‐Ping Zheng
- Lehn Institute of Functional Materials School of Chemistry Sun Yat-Sen University Guangzhou 510275 China
- Institut Europeen des Membranes Adaptive Supramolecular Nanosystems Group University of Montpellier ENSCM-CNRS Place E. Bataillon CC047 34095 Montpellier Frankreich
| | - Li‐Bo Huang
- Lehn Institute of Functional Materials School of Chemistry Sun Yat-Sen University Guangzhou 510275 China
- Institut Europeen des Membranes Adaptive Supramolecular Nanosystems Group University of Montpellier ENSCM-CNRS Place E. Bataillon CC047 34095 Montpellier Frankreich
| | - Zhanhu Sun
- Institut Europeen des Membranes Adaptive Supramolecular Nanosystems Group University of Montpellier ENSCM-CNRS Place E. Bataillon CC047 34095 Montpellier Frankreich
| | - Mihail Barboiu
- Lehn Institute of Functional Materials School of Chemistry Sun Yat-Sen University Guangzhou 510275 China
- Institut Europeen des Membranes Adaptive Supramolecular Nanosystems Group University of Montpellier ENSCM-CNRS Place E. Bataillon CC047 34095 Montpellier Frankreich
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29
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Shen Y, Zhong Y, Fei F, Sun J, Czajkowsky DM, Gong B, Shao Z. Ultrasensitive liposome-based assay for the quantification of fundamental ion channel properties. Anal Chim Acta 2020; 1112:8-15. [PMID: 32334685 DOI: 10.1016/j.aca.2020.03.044] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2019] [Revised: 02/16/2020] [Accepted: 03/22/2020] [Indexed: 10/24/2022]
Abstract
One of the most widely used approaches to characterize transmembrane ion transport through nanoscale synthetic or biological channels is a straightforward, liposome-based assay that monitors changes in ionic flux across the vesicle membrane using pH- or ion-sensitive dyes. However, failure to account for the precise experimental conditions, in particular the complete ionic composition on either side of the membrane and the inherent permeability of ions through the lipid bilayer itself, can prevent quantifications and lead to fundamentally incorrect conclusions. Here we present a quantitative model for this assay based on the Goldman-Hodgkin-Katz flux theory, which enables accurate measurements and identification of optimal conditions for the determination of ion channel permeability and selectivity. Based on our model, the detection sensitivity of channel permeability is improved by two orders of magnitude over the commonly used experimental conditions. Further, rather than obtaining qualitative preferences of ion selectivity as is typical, we determine quantitative values of these parameters under rigorously controlled conditions even when the experimental results would otherwise imply (without our model) incorrect behavior. We anticipate that this simply employed ultrasensitive assay will find wide application in the quantitative characterization of synthetic or biological ion channels.
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Affiliation(s)
- Yi Shen
- Bio-ID Center, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Yulong Zhong
- Department of Chemistry, The State University of New York at Buffalo, Buffalo, NY, 14260, United States
| | - Fan Fei
- Bio-ID Center, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Jielin Sun
- Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Daniel M Czajkowsky
- Bio-ID Center, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China.
| | - Bing Gong
- Department of Chemistry, The State University of New York at Buffalo, Buffalo, NY, 14260, United States.
| | - Zhifeng Shao
- Bio-ID Center, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China.
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30
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Shen J, Ye R, Romanies A, Roy A, Chen F, Ren C, Liu Z, Zeng H. Aquafoldmer-Based Aquaporin-like Synthetic Water Channel. J Am Chem Soc 2020; 142:10050-10058. [PMID: 32375470 DOI: 10.1021/jacs.0c02013] [Citation(s) in RCA: 55] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Synthetic water channels were developed with an aim to replace aquaporins for possible uses in water purification, while concurrently retaining aquaporins' ability to conduct highly selective superfast water transport. Among the currently available synthetic water channel systems, none possesses water transport properties that parallel those of aquaporins. In this report, we present the first synthetic water channel system with intriguing aquaproin-like features. Employing a "sticky end"-mediated molecular strategy for constructing abiotic water channels, we demonstrate that a 20% enlargement in angstrom-scale pore volume could effect a remarkable enhancement in macroscopic water transport profile by 15 folds. This gives rise to a powerful synthetic water channel able to transport water at a speed of ∼3 × 109 H2O s-1 channel-1 with a high rejection of NaCl and KCl. This high water permeability, which is about 50% of aquaporin Z's capacity, makes channel 1 the fastest among the existing synthetic water channels with high selectivity.
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Affiliation(s)
- Jie Shen
- The NanoBio Lab, 31 Biopolis Way, The Nanos, Singapore, 138669
| | - Ruijuan Ye
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore, 117585
| | - Alyssa Romanies
- Department of Chemistry & Biochemistry and the West Center for Computational Chemistry and Drug Design, University of the Sciences in Philadelphia, 600 South 43rd Street, Philadelphia, Pennsylvania 19104, United States
| | - Arundhati Roy
- The NanoBio Lab, 31 Biopolis Way, The Nanos, Singapore, 138669
| | - Feng Chen
- The NanoBio Lab, 31 Biopolis Way, The Nanos, Singapore, 138669
| | - Changliang Ren
- The NanoBio Lab, 31 Biopolis Way, The Nanos, Singapore, 138669
| | - Zhiwei Liu
- Department of Chemistry & Biochemistry and the West Center for Computational Chemistry and Drug Design, University of the Sciences in Philadelphia, 600 South 43rd Street, Philadelphia, Pennsylvania 19104, United States
| | - Huaqiang Zeng
- The NanoBio Lab, 31 Biopolis Way, The Nanos, Singapore, 138669
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31
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Boytsov D, Hannesschlaeger C, Horner A, Siligan C, Pohl P. Micropipette Aspiration-Based Assessment of Single Channel Water Permeability. Biotechnol J 2020; 15:e1900450. [PMID: 32346982 DOI: 10.1002/biot.201900450] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Revised: 03/20/2020] [Indexed: 11/09/2022]
Abstract
Measurements of the unitary hydraulic conductivity of membrane channels, pf , may be hampered by difficulties in producing sufficient quantities of purified and reconstituted proteins. Low yield expression, the purely empiric choice of detergents, as well as protein aggregation and misfolding during reconstitution may result in an average of less than one reconstituted channel per large unilamellar vesicle. This limits their applicability for pf measurements, independent of whether light scattering or fluorescence quenching of encapsulated dyes is monitored. Here the micropipette aspiration technique is adopted because its superb sensitivity allows resolving pf values for one order of magnitude smaller protein densities in sphingomyelin and cholesterol rich giant unilamellar vesicles (GUVs). Protein density is derived from intensity fluctuations that fluorescently labeled channels in the aspirated GUV induce by diffusing through the diffraction limited spot. A perfusion system minimizes unstirred layers in the immediate membrane vicinity as demonstrated by the distribution of both encapsulated and extravesicular aqueous dyes. pf amounted to 2.4 ± 0.1 × 10-13 cm³ s-1 for aquaporin-1 that served as a test case. The new assay paves the way for directly monitoring the effect that interaction of aquaporins with other proteins or inhibitors may have on pf on a single sample.
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Affiliation(s)
- Danila Boytsov
- Institute of Biophysics, Johannes Kepler University Linz, Linz, 4020, Austria
| | | | - Andreas Horner
- Institute of Biophysics, Johannes Kepler University Linz, Linz, 4020, Austria
| | - Christine Siligan
- Institute of Biophysics, Johannes Kepler University Linz, Linz, 4020, Austria
| | - Peter Pohl
- Institute of Biophysics, Johannes Kepler University Linz, Linz, 4020, Austria
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32
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Song W, Joshi H, Chowdhury R, Najem JS, Shen YX, Lang C, Henderson CB, Tu YM, Farell M, Pitz ME, Maranas CD, Cremer PS, Hickey RJ, Sarles SA, Hou JL, Aksimentiev A, Kumar M. Artificial water channels enable fast and selective water permeation through water-wire networks. NATURE NANOTECHNOLOGY 2020; 15:73-79. [PMID: 31844288 PMCID: PMC7008941 DOI: 10.1038/s41565-019-0586-8] [Citation(s) in RCA: 87] [Impact Index Per Article: 17.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2019] [Accepted: 11/04/2019] [Indexed: 05/09/2023]
Abstract
Artificial water channels are synthetic molecules that aim to mimic the structural and functional features of biological water channels (aquaporins). Here we report on a cluster-forming organic nanoarchitecture, peptide-appended hybrid[4]arene (PAH[4]), as a new class of artificial water channels. Fluorescence experiments and simulations demonstrated that PAH[4]s can form, through lateral diffusion, clusters in lipid membranes that provide synergistic membrane-spanning paths for a rapid and selective water permeation through water-wire networks. Quantitative transport studies revealed that PAH[4]s can transport >109 water molecules per second per molecule, which is comparable to aquaporin water channels. The performance of these channels exceeds the upper bound limit of current desalination membranes by a factor of ~104, as illustrated by the water/NaCl permeability-selectivity trade-off curve. PAH[4]'s unique properties of a high water/solute permselectivity via cooperative water-wire formation could usher in an alternative design paradigm for permeable membrane materials in separations, energy production and barrier applications.
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Affiliation(s)
- Woochul Song
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA
- Department of Chemical Engineering, The University of Texas at Austin, Austin, TX, USA
| | - Himanshu Joshi
- Department of Physics, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Ratul Chowdhury
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA
| | - Joseph S Najem
- Department of Mechanical, Aerospace, and Biomedical Engineering, The University of Tennessee, Knoxville, TN, USA
- Department of Mechanical Engineering, The Pennsylvania State University, UniversityPark, PA, USA
| | - Yue-Xiao Shen
- Department of Civil, Environmental, & Construction Engineering, Texas Tech University, Lubbock, TX, USA
| | - Chao Lang
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA
| | - Codey B Henderson
- Department of Chemistry, The Pennsylvania State University, University Park, PA, USA
| | - Yu-Ming Tu
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA
- Department of Chemical Engineering, The University of Texas at Austin, Austin, TX, USA
| | - Megan Farell
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA
| | - Megan E Pitz
- Department of Mechanical, Aerospace, and Biomedical Engineering, The University of Tennessee, Knoxville, TN, USA
| | - Costas D Maranas
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA
| | - Paul S Cremer
- Department of Chemistry, The Pennsylvania State University, University Park, PA, USA
| | - Robert J Hickey
- Department of Materials Science and Engineering, The Pennsylvania State University, University Park, PA, USA
| | - Stephen A Sarles
- Department of Mechanical, Aerospace, and Biomedical Engineering, The University of Tennessee, Knoxville, TN, USA
| | - Jun-Li Hou
- Department of Chemistry, Fudan University, Shanghai, China
| | - Aleksei Aksimentiev
- Department of Physics, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Manish Kumar
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA.
- Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, USA.
- Department of Civil and Environmental Engineering, The Pennsylvania State University, University Park, PA, USA.
- Department of Civil, Architectural and Environmental Engineering, The University of Texas at Austin, Austin, TX, USA.
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