1
|
Malik I, Iqbal A, Gu YH, Al-antari MA. Deep Learning for Alzheimer's Disease Prediction: A Comprehensive Review. Diagnostics (Basel) 2024; 14:1281. [PMID: 38928696 PMCID: PMC11202897 DOI: 10.3390/diagnostics14121281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2024] [Revised: 06/10/2024] [Accepted: 06/13/2024] [Indexed: 06/28/2024] Open
Abstract
Alzheimer's disease (AD) is a neurological disorder that significantly impairs cognitive function, leading to memory loss and eventually death. AD progresses through three stages: early stage, mild cognitive impairment (MCI) (middle stage), and dementia. Early diagnosis of Alzheimer's disease is crucial and can improve survival rates among patients. Traditional methods for diagnosing AD through regular checkups and manual examinations are challenging. Advances in computer-aided diagnosis systems (CADs) have led to the development of various artificial intelligence and deep learning-based methods for rapid AD detection. This survey aims to explore the different modalities, feature extraction methods, datasets, machine learning techniques, and validation methods used in AD detection. We reviewed 116 relevant papers from repositories including Elsevier (45), IEEE (25), Springer (19), Wiley (6), PLOS One (5), MDPI (3), World Scientific (3), Frontiers (3), PeerJ (2), Hindawi (2), IO Press (1), and other multiple sources (2). The review is presented in tables for ease of reference, allowing readers to quickly grasp the key findings of each study. Additionally, this review addresses the challenges in the current literature and emphasizes the importance of interpretability and explainability in understanding deep learning model predictions. The primary goal is to assess existing techniques for AD identification and highlight obstacles to guide future research.
Collapse
Affiliation(s)
- Isra Malik
- Department of Computer Science, COMSATS University Islamabad, Wah Campus, Wah Cantt 44000, Pakistan
| | - Ahmed Iqbal
- Department of Computer Science, Sir Syed Case Institute of Technology, Islamabad 45230, Pakistan
| | - Yeong Hyeon Gu
- Department of Artificial Intelligence and Data Science, College of AI Convergence, Daeyang AI Center, Sejong University, Seoul 05006, Republic of Korea
| | - Mugahed A. Al-antari
- Department of Artificial Intelligence and Data Science, College of AI Convergence, Daeyang AI Center, Sejong University, Seoul 05006, Republic of Korea
| |
Collapse
|
2
|
Agostinho D, Simões M, Castelo-Branco M. Predicting conversion from mild cognitive impairment to Alzheimer's disease: a multimodal approach. Brain Commun 2024; 6:fcae208. [PMID: 38961871 PMCID: PMC11220508 DOI: 10.1093/braincomms/fcae208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Revised: 04/09/2024] [Accepted: 06/12/2024] [Indexed: 07/05/2024] Open
Abstract
Successively predicting whether mild cognitive impairment patients will progress to Alzheimer's disease is of significant clinical relevance. This ability may provide information that can be leveraged by emerging intervention approaches and thus mitigate some of the negative effects of the disease. Neuroimaging biomarkers have gained some attention in recent years and may be useful in predicting the conversion of mild cognitive impairment to Alzheimer's disease. We implemented a novel multi-modal approach that allowed us to evaluate the potential of different imaging modalities, both alone and in different degrees of combinations, in predicting the conversion to Alzheimer's disease of mild cognitive impairment patients. We applied this approach to the imaging data from the Alzheimer's Disease Neuroimaging Initiative that is a multi-modal imaging dataset comprised of MRI, Fluorodeoxyglucose PET, Florbetapir PET and diffusion tensor imaging. We included a total of 480 mild cognitive impairment patients that were split into two groups: converted and stable. Imaging data were segmented into atlas-based regions of interest, from which relevant features were extracted for the different imaging modalities and used to construct machine-learning models to classify mild cognitive impairment patients into converted or stable, using each of the different imaging modalities independently. The models were then combined, using a simple weight fusion ensemble strategy, to evaluate the complementarity of different imaging modalities and their contribution to the prediction accuracy of the models. The single-modality findings revealed that the model, utilizing features extracted from Florbetapir PET, demonstrated the highest performance with a balanced accuracy of 83.51%. Concerning multi-modality models, not all combinations enhanced mild cognitive impairment conversion prediction. Notably, the combination of MRI with Fluorodeoxyglucose PET emerged as the most promising, exhibiting an overall improvement in predictive capabilities, achieving a balanced accuracy of 78.43%. This indicates synergy and complementarity between the two imaging modalities in predicting mild cognitive impairment conversion. These findings suggest that β-amyloid accumulation provides robust predictive capabilities, while the combination of multiple imaging modalities has the potential to surpass certain single-modality approaches. Exploring modality-specific biomarkers, we identified the brainstem as a sensitive biomarker for both MRI and Fluorodeoxyglucose PET modalities, implicating its involvement in early Alzheimer's pathology. Notably, the corpus callosum and adjacent cortical regions emerged as potential biomarkers, warranting further study into their role in the early stages of Alzheimer's disease.
Collapse
Affiliation(s)
- Daniel Agostinho
- Coimbra Institute for Biomedical Imaging and Translational Research (CIBIT), ICNAS, Faculty of Medicine, University of Coimbra, 3000-548 Coimbra, Portugal
- Faculty of Science and Technology, Centre for Informatics and Systems of the University of Coimbra (CISUC), 3030-790 Coimbra, Portugal
- Intelligent Systems Associate Laboratory (LASI), 4800-058 Guimarães, Portugal
| | - Marco Simões
- Coimbra Institute for Biomedical Imaging and Translational Research (CIBIT), ICNAS, Faculty of Medicine, University of Coimbra, 3000-548 Coimbra, Portugal
- Faculty of Science and Technology, Centre for Informatics and Systems of the University of Coimbra (CISUC), 3030-790 Coimbra, Portugal
- Intelligent Systems Associate Laboratory (LASI), 4800-058 Guimarães, Portugal
| | - Miguel Castelo-Branco
- Coimbra Institute for Biomedical Imaging and Translational Research (CIBIT), ICNAS, Faculty of Medicine, University of Coimbra, 3000-548 Coimbra, Portugal
- Intelligent Systems Associate Laboratory (LASI), 4800-058 Guimarães, Portugal
| |
Collapse
|
3
|
Jomeiri A, Navin AH, Shamsi M. Longitudinal MRI analysis using a hybrid DenseNet-BiLSTM method for Alzheimer's disease prediction. Behav Brain Res 2024; 463:114900. [PMID: 38341100 DOI: 10.1016/j.bbr.2024.114900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Revised: 12/16/2023] [Accepted: 02/06/2024] [Indexed: 02/12/2024]
Abstract
Alzheimer's disease is a progressive neurological disorder characterized by brain atrophy and cell death, leading to cognitive decline and impaired functioning. Previous research has primarily focused on using cross-sectional data for Alzheimer's disease identification, but analyzing longitudinal sequential MR images is crucial for improved diagnostic accuracy and understanding disease progression. However, existing deep learning models face challenges in learning spatial and temporal features from such data. To address these challenges, this study presents a novel hybrid DenseNet-BiLSTM method for Alzheimer's disease prediction using longitudinal MRI analysis. The proposed framework combines Convolutional DenseNet for spatial information extraction and joined BiLSTM layers for capturing temporal characteristics and relationships between longitudinal images at different time points. This approach overcomes issues like overfitting, vanishing gradients, and incomplete patient data. We evaluated the model on 684 longitudinal MRI images from the Alzheimer's Disease Neuroimaging Initiative (ADNI) database, including normal controls, individuals with mild cognitive impairment, and Alzheimer's disease patients. The results demonstrate high classification accuracy, with 95.28% for AD/CN, 88.19% for NC/MCI, 83.51% for sMCI/pMCI, and 92.14% for MCI/AD. These findings highlight the substantial improvement in Alzheimer's disease diagnosis achieved through the utilization of longitudinal MRI images. The contributions of this study lie in both the deep learning and medical domains. In the deep learning domain, our hybrid framework effectively learns spatial and temporal features from longitudinal data, addressing the challenges associated with multi-dimensional and sequential time series data. In the medical domain, our study emphasizes the importance of analyzing baseline and longitudinal MR images for accurate diagnosis and understanding disease progression.
Collapse
Affiliation(s)
- Alireza Jomeiri
- Department of Computer Engineering, Qom Branch, Islamic Azad University, Qom, Iran
| | - Ahmad Habibizad Navin
- Department of Computer Engineering, Tabriz Branch, Islamic Azad University, Tabriz, Iran.
| | - Mahboubeh Shamsi
- Department of Engineering, Qom University of Technology, Qom, Iran
| |
Collapse
|
4
|
Ahmadzadeh M, Christie GJ, Cosco TD, Arab A, Mansouri M, Wagner KR, DiPaola S, Moreno S. Neuroimaging and machine learning for studying the pathways from mild cognitive impairment to alzheimer's disease: a systematic review. BMC Neurol 2023; 23:309. [PMID: 37608251 PMCID: PMC10463866 DOI: 10.1186/s12883-023-03323-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Accepted: 07/08/2023] [Indexed: 08/24/2023] Open
Abstract
BACKGROUND This systematic review synthesizes the most recent neuroimaging procedures and machine learning approaches for the prediction of conversion from mild cognitive impairment to Alzheimer's disease dementia. METHODS We systematically searched PubMed, SCOPUS, and Web of Science databases following Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) systematic review guidelines. RESULTS Our search returned 2572 articles, 56 of which met the criteria for inclusion in the final selection. The multimodality framework and deep learning techniques showed potential for predicting the conversion of MCI to AD dementia. CONCLUSION Findings of this systematic review identified that the possibility of using neuroimaging data processed by advanced learning algorithms is promising for the prediction of AD progression. We also provided a detailed description of the challenges that researchers are faced along with future research directions. The protocol has been registered in the International Prospective Register of Systematic Reviews- CRD42019133402 and published in the Systematic Reviews journal.
Collapse
Affiliation(s)
- Maryam Ahmadzadeh
- School of Interactive Arts and Technology, Simon Fraser University, 250 - 13450 102 Ave, Surrey, BC, Canada
| | - Gregory J Christie
- School of Interactive Arts and Technology, Simon Fraser University, 250 - 13450 102 Ave, Surrey, BC, Canada
| | - Theodore D Cosco
- Gerontology Research Center, Simon Fraser University, Vancouver, BC, Canada
- Oxford Institute of Population Ageing, University of Oxford, Oxford, UK
| | - Ali Arab
- Department of Computing Science, Simon Fraser University, Burnaby, BC, Canada
| | - Mehrdad Mansouri
- Department of Computing Science, Simon Fraser University, Burnaby, BC, Canada
| | - Kevin R Wagner
- Gerontology Research Center, Simon Fraser University, Vancouver, BC, Canada
| | - Steve DiPaola
- School of Interactive Arts and Technology, Simon Fraser University, 250 - 13450 102 Ave, Surrey, BC, Canada.
| | - Sylvain Moreno
- School of Interactive Arts and Technology, Simon Fraser University, 250 - 13450 102 Ave, Surrey, BC, Canada
| |
Collapse
|
5
|
Noh JH, Kim JH, Yang HD. Classification of Alzheimer's Progression Using fMRI Data. SENSORS (BASEL, SWITZERLAND) 2023; 23:6330. [PMID: 37514624 PMCID: PMC10383967 DOI: 10.3390/s23146330] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 06/27/2023] [Accepted: 06/28/2023] [Indexed: 07/30/2023]
Abstract
In the last three decades, the development of functional magnetic resonance imaging (fMRI) has significantly contributed to the understanding of the brain, functional brain mapping, and resting-state brain networks. Given the recent successes of deep learning in various fields, we propose a 3D-CNN-LSTM classification model to diagnose health conditions with the following classes: condition normal (CN), early mild cognitive impairment (EMCI), late mild cognitive impairment (LMCI), and Alzheimer's disease (AD). The proposed method employs spatial and temporal feature extractors, wherein the former utilizes a U-Net architecture to extract spatial features, and the latter utilizes long short-term memory (LSTM) to extract temporal features. Prior to feature extraction, we performed four-step pre-processing to remove noise from the fMRI data. In the comparative experiments, we trained each of the three models by adjusting the time dimension. The network exhibited an average accuracy of 96.4% when using five-fold cross-validation. These results show that the proposed method has high potential for identifying the progression of Alzheimer's by analyzing 4D fMRI data.
Collapse
Affiliation(s)
- Ju-Hyeon Noh
- Department of Computer Engineering, University of Chosun, Gwangju 61452, Republic of Korea
| | - Jun-Hyeok Kim
- Department of Computer Engineering, University of Chosun, Gwangju 61452, Republic of Korea
| | - Hee-Deok Yang
- Department of Computer Engineering, University of Chosun, Gwangju 61452, Republic of Korea
| |
Collapse
|
6
|
Blum D, Hepp T, Belov V, Goya-Maldonado R, la Fougère C, Reimold M. Estimating uncertainty in read-out patterns: Application to controls-based denoising and voxel-based morphometry patterns in neurodegenerative and neuropsychiatric diseases. Hum Brain Mapp 2023; 44:2802-2814. [PMID: 36947555 PMCID: PMC10089107 DOI: 10.1002/hbm.26246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Revised: 01/13/2023] [Accepted: 02/11/2023] [Indexed: 03/23/2023] Open
Abstract
Quantifying pathology-related patterns in patient data with pattern expression score (PES) is a standard approach in medical image analysis. In order to estimate the PES error, we here propose to express the uncertainty contained in read-out patterns in terms of the expected squared Euclidean distance between the read-out pattern and the unknown "true" pattern (squared standard error of the read-out pattern, SE2 ). Using SE2 , we predicted and optimized the net benefit (NBe) of the recently suggested method controls-based denoising (CODE) by weighting patterns of nonpathological variance (NPV). Multi-center MRI (1192 patients with various neurodegenerative and neuropsychiatric diseases, 1832 healthy controls) were analysed with voxel-based morphometry. For each pathology, accounting for SE2 , NBe correctly predicted classification improvement and allowed to optimize NPV pattern weights. Using these weights, CODE improved classification performances in all but one analyses, for example, for prediction of conversion to Alzheimer's disease (AUC 0.81 vs. 0.75, p = .01), diagnosis of autism (AUC 0.66 vs. 0.60, p < .001), and of major depressive disorder (AUC 0.62 vs. 0.50, p = .03). We conclude that the degree of uncertainty in a read-out pattern should generally be reported in PES-based analyses and suggest using weighted CODE as a complement to PES-based analyses.
Collapse
Affiliation(s)
- Dominik Blum
- Department of Nuclear Medicine and Clinical Molecular Imaging, University Hospital Tübingen, Tübingen, Germany
| | - Tobias Hepp
- Department of Radiology, University Hospital Tübingen, Tübingen, Germany
- Max Planck Institute for Intelligent Systems, Tübingen, Germany
| | - Valdimir Belov
- Laboratory of Systems Neuroscience and Imaging in Psychiatry, University Medical Center Göttingen, Göttingen, Germany
| | - Roberto Goya-Maldonado
- Laboratory of Systems Neuroscience and Imaging in Psychiatry, University Medical Center Göttingen, Göttingen, Germany
| | - Christian la Fougère
- Department of Nuclear Medicine and Clinical Molecular Imaging, University Hospital Tübingen, Tübingen, Germany
| | - Matthias Reimold
- Department of Nuclear Medicine and Clinical Molecular Imaging, University Hospital Tübingen, Tübingen, Germany
| |
Collapse
|
7
|
El-Sappagh S, Alonso-Moral JM, Abuhmed T, Ali F, Bugarín-Diz A. Trustworthy artificial intelligence in Alzheimer’s disease: state of the art, opportunities, and challenges. Artif Intell Rev 2023. [DOI: 10.1007/s10462-023-10415-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/28/2023]
|
8
|
Illakiya T, Karthik R. Automatic Detection of Alzheimer's Disease using Deep Learning Models and Neuro-Imaging: Current Trends and Future Perspectives. Neuroinformatics 2023; 21:339-364. [PMID: 36884142 DOI: 10.1007/s12021-023-09625-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/16/2023] [Indexed: 03/09/2023]
Abstract
Deep learning algorithms have a huge influence on tackling research issues in the field of medical image processing. It acts as a vital aid for the radiologists in producing accurate results toward effective disease diagnosis. The objective of this research is to highlight the importance of deep learning models in the detection of Alzheimer's Disease (AD). The main objective of this research is to analyze different deep learning methods used for detecting AD. This study examines 103 research articles published in various research databases. These articles have been selected based on specific criteria to find the most relevant findings in the field of AD detection. The review was carried out based on deep learning techniques such as Convolutional Neural Networks (CNNs), Recurrent Neural Networks (RNNs), and Transfer Learning (TL). To propose accurate methods for the detection, segmentation, and severity grading of AD, the radiological features need to be examined in greater depth. This review attempts to analyze different deep learning methods applied for AD detection using neuroimaging modalities like Positron Emission Tomography (PET), Magnetic Resonance Imaging (MRI), etc. The focus of this review is restricted to deep learning works based on radiological imaging data for AD detection. There are a few works that have utilized other biomarkers to understand the effect of AD. Also, articles published in English were alone considered for analysis. This work concludes by highlighting the key research issues towards effective AD detection. Though several methods have yielded promising results in AD detection, the progression from Mild Cognitive Impairment (MCI) to AD need to be analyzed in greater depth using DL models.
Collapse
Affiliation(s)
- T Illakiya
- School of Computer Science and Engineering, Vellore Institute of Technology, Chennai, India
| | - R Karthik
- Centre for Cyber Physical Systems, School of Electronics Engineering, Vellore Institute of Technology, Chennai, India.
| |
Collapse
|
9
|
Hollenbenders Y, Pobiruchin M, Reichenbach A. Two Routes to Alzheimer's Disease Based on Differential Structural Changes in Key Brain Regions. J Alzheimers Dis 2023; 92:1399-1412. [PMID: 36911937 DOI: 10.3233/jad-221061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/09/2023]
Abstract
BACKGROUND Alzheimer's disease (AD) is a neurodegenerative disorder with homogenous disease patterns. Neuropathological changes precede symptoms by up to two decades making neuroimaging biomarkers a prime candidate for early diagnosis, prognosis, and patient stratification. OBJECTIVE The goal of the study was to discern intermediate AD stages and their precursors based on neuroanatomical features for stratifying patients on their progression through different stages. METHODS Data include grey matter features from 14 brain regions extracted from longitudinal structural MRI and cognitive data obtained from 1,017 healthy controls and AD patients of ADNI. AD progression was modeled with a Hidden Markov Model, whose hidden states signify disease stages derived from the neuroanatomical data. To tie the progression in brain atrophy to a behavioral marker, we analyzed the ADAS-cog sub-scores in the stages. RESULTS The optimal model consists of eight states with differentiable neuroanatomical features, forming two routes crossing once at a very early point and merging at the final state. The cortical route is characterized by early and sustained atrophy in cortical regions. The limbic route is characterized by early decrease in limbic regions. Cognitive differences between the two routes are most noticeable in the memory domain with subjects from the limbic route experiencing stronger memory impairments. CONCLUSION Our findings corroborate that more than one pattern of grey matter deterioration with several discernable stages can be identified in the progression of AD. These neuroanatomical subtypes are behaviorally meaningful and provide a door into early diagnosis of AD and prognosis of the disease's progression.
Collapse
Affiliation(s)
- Yasmin Hollenbenders
- Medical Faculty Heidelberg, Heidelberg University, Germany.,Faculty of Computer Science, Heilbronn University of Applied Sciences, Germany.,Center for Machine Learning, Heilbronn University of Applied Sciences, Germany
| | - Monika Pobiruchin
- Faculty of Computer Science, Heilbronn University of Applied Sciences, Germany.,GECKO Institute for Medicine, Informatics and Economics, Heilbronn University of Applied Sciences, Germany
| | - Alexandra Reichenbach
- Medical Faculty Heidelberg, Heidelberg University, Germany.,Faculty of Computer Science, Heilbronn University of Applied Sciences, Germany.,Center for Machine Learning, Heilbronn University of Applied Sciences, Germany
| | | |
Collapse
|
10
|
Beheshti I, Sone D, Yao Z, Maikusa N. Editorial: State-of-the-art artificial intelligence methods in neurodegeneration. Front Neurol 2023; 13:1112639. [PMID: 36756344 PMCID: PMC9901294 DOI: 10.3389/fneur.2022.1112639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Accepted: 12/06/2022] [Indexed: 01/25/2023] Open
Affiliation(s)
- Iman Beheshti
- Department of Human Anatomy and Cell Science, University of Manitoba, Winnipeg, MB, Canada,*Correspondence: Iman Beheshti ✉
| | - Daichi Sone
- Department of Psychiatry, Jikei University School of Medicine, Tokyo, Japan
| | - Zhijun Yao
- Gansu Provincial Key Laboratory of Wearable Computing, School of Information Science and Engineering, Lanzhou University, Lanzhou, China
| | - Norihide Maikusa
- Center for Evolutionary Cognitive Sciences, Graduate School of Art and Sciences, The University of Tokyo, Tokyo, Japan,Norihide Maikusa ✉
| |
Collapse
|
11
|
Garg N, Choudhry MS, Bodade RM. A review on Alzheimer's disease classification from normal controls and mild cognitive impairment using structural MR images. J Neurosci Methods 2023; 384:109745. [PMID: 36395961 DOI: 10.1016/j.jneumeth.2022.109745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Revised: 10/04/2022] [Accepted: 11/11/2022] [Indexed: 11/16/2022]
Abstract
Alzheimer's disease (AD) is an irreversible neurodegenerative brain disorder that degrades the memory and cognitive ability in elderly people. The main reason for memory loss and reduction in cognitive ability is the structural changes in the brain that occur due to neuronal loss. These structural changes are most conspicuous in the hippocampus, cortex, and grey matter and can be assessed by using neuroimaging techniques viz. Positron Emission Tomography (PET), structural Magnetic Resonance Imaging (MRI) and functional MRI (fMRI), etc. Out of these neuroimaging techniques, structural MRI has evolved as the best technique as it indicates the best soft tissue contrast and high spatial resolution which is important for AD detection. Currently, the focus of researchers is on predicting the conversion of Mild Cognitive Impairment (MCI) into AD. MCI represents the transition state between expected cognitive changes with normal aging and Alzheimer's disease. Not every MCI patient progresses into Alzheimer's disease. MCI can develop into stable MCI (sMCI, patients are called non-converters) or into progressive MCI (pMCI, patients are diagnosed as MCI converters). This paper discusses the prognosis of MCI to AD conversion and presents a review of structural MRI-based studies for AD detection. AD detection framework includes feature extraction, feature selection, and classification process. This paper reviews the studies for AD detection based on different feature extraction methods and machine learning algorithms for classification. The performance of various feature extraction methods has been compared and it has been observed that the wavelet transform-based feature extraction method would give promising results for AD classification. The present study indicates that researchers are successful in classifying AD from Normal Controls (NrmC) but, it still requires a lot of work to be done for MCI/ NrmC and MCI/AD, which would help in detecting AD at its early stage.
Collapse
Affiliation(s)
- Neha Garg
- Delhi Technological University, Department of Electronics and Communication, Delhi 110042, India.
| | - Mahipal Singh Choudhry
- Delhi Technological University, Department of Electronics and Communication, Delhi 110042, India.
| | - Rajesh M Bodade
- Military College of Telecommunication Engineering (MCTE), Mhow, Indore 453441, Madhya Pradesh, India.
| |
Collapse
|
12
|
Marcisz A, Polanska J. Can T1-Weighted Magnetic Resonance Imaging Significantly Improve Mini-Mental State Examination-Based Distinguishing Between Mild Cognitive Impairment and Early-Stage Alzheimer's Disease? J Alzheimers Dis 2023; 92:941-957. [PMID: 36806505 PMCID: PMC10116132 DOI: 10.3233/jad-220806] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/23/2023] [Indexed: 02/19/2023]
Abstract
BACKGROUND Detecting early-stage Alzheimer's disease (AD) is still problematic in clinical practice. This work aimed to find T1-weighted MRI-based markers for AD and mild cognitive impairment (MCI) to improve the screening process. OBJECTIVE Our assumption was to build a screening model that would be accessible and easy to use for physicians in their daily clinical routine. METHODS The multinomial logistic regression was used to detect status: AD, MCI, and normal control (NC) combined with the Bayesian information criterion for model selection. Several T1-weighted MRI-based radiomic features were considered explanatory variables in the prediction model. RESULTS The best radiomic predictor was the relative brain volume. The proposed method confirmed its quality by achieving a balanced accuracy of 95.18%, AUC of 93.25%, NPV of 97.93%, and PPV of 90.48% for classifying AD versus NC for the European DTI Study on Dementia (EDSD). The comparison of the two models: with the MMSE score only as an independent variable and corrected for the relative brain value and age, shows that the addition of the T1-weighted MRI-based biomarker improves the quality of MCI detection (AUC: 67.04% versus 71.08%) while maintaining quality for AD (AUC: 93.35% versus 93.25%). Additionally, among MCI patients predicted as AD inconsistently with the original diagnosis, 60% from ADNI and 76.47% from EDSD were re-diagnosed as AD within a 48-month follow-up. It shows that our model can detect AD patients a few years earlier than a standard medical diagnosis. CONCLUSION The created method is non-invasive, inexpensive, clinically accessible, and efficiently supports AD/MCI screening.
Collapse
Affiliation(s)
- Anna Marcisz
- Department of Data Science and Engineering, The Silesian University of Technology, Gliwice, Poland
| | | | - Joanna Polanska
- Department of Data Science and Engineering, The Silesian University of Technology, Gliwice, Poland
| |
Collapse
|
13
|
Li M, Jiang Y, Li X, Yin S, Luo H. Ensemble of convolutional neural networks and multilayer perceptron for the diagnosis of mild cognitive impairment and Alzheimer's disease. Med Phys 2023; 50:209-225. [PMID: 36121183 DOI: 10.1002/mp.15985] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 08/09/2022] [Accepted: 09/07/2022] [Indexed: 01/25/2023] Open
Abstract
BACKGROUND Structural magnetic resonance imaging (sMRI) can provide morphological information about the structure and function of the brain in the same scanning process. It has been widely used in the diagnosis of Alzheimer's disease (AD) and mild cognitive impairment (MCI). PURPOSE To capture the anatomical changes in the brain caused by AD/MCI, deep learning-based MRI image analysis methods have been proposed in recent years. However, it is observed that the performance of most existing methods is limited as they only construct a single type of deep network and ignore the significance of other clinical information. METHODS To make up for these defects, an ensemble framework that incorporates three types of dedicatedly-designed convolutional neural networks (CNNs) and a multilayer perceptron (MLP) network is proposed, where three CNNs with entropy-based multi-instance learning pooling layers have more reliable feature selection abilities. The dedicatedly-designed base classifiers can make use of the heterogeneous data, and empower the framework with enhanced diversity and robustness. In particular, to consider the interactions among the base classifiers, a novel multi-head self-attention voting scheme is designed. Moreover, considering the chance that MCI can be transformed to AD, the proposed framework is designed to diagnose AD and predict MCI conversion simultaneously, with the aid of the transfer learning technique. RESULTS For performance evaluation and comparison, extensive experiments are conducted on the public dataset of the Alzheimer's Disease Neuroimaging Initiative (ADNI). The results show that the proposed ensemble framework provides superior performance under most of the evaluation metrics. Especially, the proposed framework achieves state-of-the-art diagnostic accuracy (98.61% for the AD diagnosis task, and 84.49% for the MCI conversion prediction task). CONCLUSIONS These promising results demonstrate the proposed ensemble framework can accurately diagnose AD patients and predict the conversion of MCI patients, which has the potential of clinical practice for diagnosing AD and MCI.
Collapse
Affiliation(s)
- Minglei Li
- Department of Control Science and Engineering, Harbin Institute of Technology, Harbin, Heilongjiang, China
| | - Yuchen Jiang
- Department of Control Science and Engineering, Harbin Institute of Technology, Harbin, Heilongjiang, China
| | - Xiang Li
- Department of Control Science and Engineering, Harbin Institute of Technology, Harbin, Heilongjiang, China
| | - Shen Yin
- Department of Mechanical and Industrial Engineering, Norwegian University of Science and Technology, Trondheim, Norway
| | - Hao Luo
- Department of Control Science and Engineering, Harbin Institute of Technology, Harbin, Heilongjiang, China
| |
Collapse
|
14
|
M Arabi E, S Ahmed K, S Mohra A. Advanced Diagnostic Technique for Alzheimer's Disease using MRI Top-Ranked Volume and Surface-based Features. J Biomed Phys Eng 2022; 12:569-582. [PMID: 36569569 PMCID: PMC9759646 DOI: 10.31661/jbpe.v0i0.2112-1440] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Accepted: 03/20/2022] [Indexed: 12/05/2022]
Abstract
Background Alzheimer's disease (AD) is the most dominant type of dementia that has not been treated completely yet. Few Alzheimer's patients are correctly diagnosed on time. Therefore, diagnostic tools are needed for better and more efficient diagnoses. Objective This study aimed to develop an efficient automated method to differentiate Alzheimer's patients from normal elderly and present the essential features with accurate Alzheimer's diagnosis. Material and Methods In this analytical study, 154 Magnetic Resonance Imaging (MRI) scans were obtained from the Alzheimer's Disease Neuroimaging Initiative (ADNI) database, preprocessed, and normalized by the head size for extracting features (volume, cortical thickness, Sulci depth, and Gyrification Index Features (GIF). Relief-F algorithm, t-test, and one way-ANOVA were used for feature ranking to obtain the most effective features representing the AD for the classification process. Finally, in the classification step, four classifiers were used with 10 folds cross-validation as follows: Gaussian Support Vector Machine (GSVM), Linear Support Vector Machine (LSVM), Weighted K-Nearest Neighbors (W-KNN), and Decision Tree algorithm. Results The LSVM classifier and W-KNN produce a testing accuracy of 100% with only seven features. Additionally, GSVM and decision tree produce a testing accuracy of 97.83% and 93.48%, respectively. Conclusion The proposed system represents an automatic and highly accurate AD detection with a few reliable and effective features and minimum time.
Collapse
Affiliation(s)
- Esraa M Arabi
- MSc, Department of Electrical Engineering, Benha Faculty of Engineering, Benha University, Benha, Egypt
| | - Khaled S Ahmed
- PhD, Department of Electrical Engineering, Benha Faculty of Engineering, Benha University, Benha, Egypt
| | - Ashraf S Mohra
- PhD, Department of Electrical Engineering, Benha Faculty of Engineering, Benha University, Benha, Egypt
| |
Collapse
|
15
|
Golovanevsky M, Eickhoff C, Singh R. Multimodal attention-based deep learning for Alzheimer's disease diagnosis. J Am Med Inform Assoc 2022; 29:2014-2022. [PMID: 36149257 PMCID: PMC9667156 DOI: 10.1093/jamia/ocac168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 08/10/2022] [Accepted: 09/21/2022] [Indexed: 11/13/2022] Open
Abstract
OBJECTIVE Alzheimer's disease (AD) is the most common neurodegenerative disorder with one of the most complex pathogeneses, making effective and clinically actionable decision support difficult. The objective of this study was to develop a novel multimodal deep learning framework to aid medical professionals in AD diagnosis. MATERIALS AND METHODS We present a Multimodal Alzheimer's Disease Diagnosis framework (MADDi) to accurately detect the presence of AD and mild cognitive impairment (MCI) from imaging, genetic, and clinical data. MADDi is novel in that we use cross-modal attention, which captures interactions between modalities-a method not previously explored in this domain. We perform multi-class classification, a challenging task considering the strong similarities between MCI and AD. We compare with previous state-of-the-art models, evaluate the importance of attention, and examine the contribution of each modality to the model's performance. RESULTS MADDi classifies MCI, AD, and controls with 96.88% accuracy on a held-out test set. When examining the contribution of different attention schemes, we found that the combination of cross-modal attention with self-attention performed the best, and no attention layers in the model performed the worst, with a 7.9% difference in F1-scores. DISCUSSION Our experiments underlined the importance of structured clinical data to help machine learning models contextualize and interpret the remaining modalities. Extensive ablation studies showed that any multimodal mixture of input features without access to structured clinical information suffered marked performance losses. CONCLUSION This study demonstrates the merit of combining multiple input modalities via cross-modal attention to deliver highly accurate AD diagnostic decision support.
Collapse
Affiliation(s)
- Michal Golovanevsky
- Department of Computer Science, Brown University, Providence, Rhode Island, USA
| | - Carsten Eickhoff
- Department of Computer Science, Brown University, Providence, Rhode Island, USA
- Center for Biomedical Informatics, Brown University, Providence, Rhode Island, USA
| | - Ritambhara Singh
- Department of Computer Science, Brown University, Providence, Rhode Island, USA
- Center for Computational Molecular Biology, Brown University, Providence, Rhode Island, USA
| |
Collapse
|
16
|
Chun MY, Park CJ, Kim J, Jeong JH, Jang H, Kim K, Seo SW. Prediction of conversion to dementia using interpretable machine learning in patients with amnestic mild cognitive impairment. Front Aging Neurosci 2022; 14:898940. [PMID: 35992586 PMCID: PMC9389270 DOI: 10.3389/fnagi.2022.898940] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Accepted: 07/18/2022] [Indexed: 11/13/2022] Open
Abstract
Purpose Amnestic mild cognitive impairment (aMCI) is a transitional state between normal aging and Alzheimer’s disease (AD). However, not all aMCI patients are observed to convert to AD dementia. Therefore, developing a predictive algorithm for the conversion of aMCI to AD dementia is important. Parametric methods, such as logistic regression, have been developed; however, it is difficult to reflect complex patterns, such as non-linear relationships and interactions between variables. Therefore, this study aimed to improve the predictive power of aMCI patients’ conversion to dementia by using an interpretable machine learning (IML) algorithm and to identify the factors that increase the risk of individual conversion to dementia in each patient. Methods We prospectively recruited 705 patients with aMCI who had been followed-up for at least 3 years after undergoing baseline neuropsychological tests at the Samsung Medical Center between 2007 and 2019. We used neuropsychological tests and apolipoprotein E (APOE) genotype data to develop a predictive algorithm. The model-building and validation datasets were composed of data of 565 and 140 patients, respectively. For global interpretation, four algorithms (logistic regression, random forest, support vector machine, and extreme gradient boosting) were compared. For local interpretation, individual conditional expectations (ICE) and SHapley Additive exPlanations (SHAP) were used to analyze individual patients. Results Among the four algorithms, the extreme gradient boost model showed the best performance, with an area under the receiver operating characteristic curve of 0.852 and an accuracy of 0.807. Variables, such as age, education, the scores of visuospatial and memory domains, the sum of boxes of the Clinical Dementia Rating scale, Mini-Mental State Examination, and APOE genotype were important features for creating the algorithm. Through ICE and SHAP analyses, it was also possible to interpret which variables acted as strong factors for each patient. Conclusion We were able to propose a predictive algorithm for each aMCI individual’s conversion to dementia using the IML technique. This algorithm is expected to be useful in clinical practice and the research field, as it can suggest conversion with high accuracy and identify the degree of influence of risk factors for each patient.
Collapse
Affiliation(s)
- Min Young Chun
- Department of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea
| | - Chae Jung Park
- Department of Digital Health, Samsung Advanced Institute for Health Sciences and Technology, Sungkyunkwan University, Seoul, South Korea
- Alzheimer’s Disease Convergence Research Center, Samsung Medical Center, Seoul, South Korea
| | - Jonghyuk Kim
- Department of Digital Health, Samsung Advanced Institute for Health Sciences and Technology, Sungkyunkwan University, Seoul, South Korea
| | - Jee Hyang Jeong
- Department of Neurology, Ewha Womans University Seoul Hospital, Ewha Womans University College of Medicine, Seoul, South Korea
| | - Hyemin Jang
- Department of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea
- Alzheimer’s Disease Convergence Research Center, Samsung Medical Center, Seoul, South Korea
| | - Kyunga Kim
- Department of Digital Health, Samsung Advanced Institute for Health Sciences and Technology, Sungkyunkwan University, Seoul, South Korea
- Biomedical Statistics Center, Data Science Research Institute, Research Institute for Future Medicine, Samsung Medical Center, Seoul, South Korea
- *Correspondence: Kyunga Kim,
| | - Sang Won Seo
- Department of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea
- Department of Digital Health, Samsung Advanced Institute for Health Sciences and Technology, Sungkyunkwan University, Seoul, South Korea
- Alzheimer’s Disease Convergence Research Center, Samsung Medical Center, Seoul, South Korea
- Department of Health Sciences and Technology, Samsung Advanced Institute for Health Sciences and Technology, Sungkyunkwan University, Seoul, South Korea
- Department of Intelligent Precision Healthcare Convergence, Sungkyunkwan University, Suwon, South Korea
- Sang Won Seo,
| |
Collapse
|
17
|
Zamani J, Sadr A, Javadi AH. Classification of early-MCI patients from healthy controls using evolutionary optimization of graph measures of resting-state fMRI, for the Alzheimer's disease neuroimaging initiative. PLoS One 2022; 17:e0267608. [PMID: 35727837 PMCID: PMC9212187 DOI: 10.1371/journal.pone.0267608] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Accepted: 04/11/2022] [Indexed: 11/21/2022] Open
Abstract
Identifying individuals with early mild cognitive impairment (EMCI) can be an effective strategy for early diagnosis and delay the progression of Alzheimer's disease (AD). Many approaches have been devised to discriminate those with EMCI from healthy control (HC) individuals. Selection of the most effective parameters has been one of the challenging aspects of these approaches. In this study we suggest an optimization method based on five evolutionary algorithms that can be used in optimization of neuroimaging data with a large number of parameters. Resting-state functional magnetic resonance imaging (rs-fMRI) measures, which measure functional connectivity, have been shown to be useful in prediction of cognitive decline. Analysis of functional connectivity data using graph measures is a common practice that results in a great number of parameters. Using graph measures we calculated 1155 parameters from the functional connectivity data of HC (n = 72) and EMCI (n = 68) extracted from the publicly available database of the Alzheimer's disease neuroimaging initiative database (ADNI). These parameters were fed into the evolutionary algorithms to select a subset of parameters for classification of the data into two categories of EMCI and HC using a two-layer artificial neural network. All algorithms achieved classification accuracy of 94.55%, which is extremely high considering single-modality input and low number of data participants. These results highlight potential application of rs-fMRI and efficiency of such optimization methods in classification of images into HC and EMCI. This is of particular importance considering that MRI images of EMCI individuals cannot be easily identified by experts.
Collapse
Affiliation(s)
- Jafar Zamani
- School of Electrical Engineering, Iran University of Science and Technology, Tehran, Iran
| | - Ali Sadr
- School of Electrical Engineering, Iran University of Science and Technology, Tehran, Iran
| | - Amir-Homayoun Javadi
- School of Psychology, University of Kent, Canterbury, United Kingdom
- School of Rehabilitation, Tehran University of Medical Sciences, Tehran, Iran
| |
Collapse
|
18
|
A novelty detection approach to effectively predict conversion from mild cognitive impairment to Alzheimer’s disease. INT J MACH LEARN CYB 2022. [DOI: 10.1007/s13042-022-01570-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
AbstractAccurately recognising patients with progressive mild cognitive impairment (pMCI) who will develop Alzheimer’s disease (AD) in subsequent years is very important, as early identification of those patients will enable interventions to potentially reduce the number of those transitioning from MCI to AD. Most studies in this area have concentrated on high-dimensional neuroimaging data with supervised binary/multi-class classification algorithms. However, neuroimaging data is more costly to obtain than non-imaging, and healthcare datasets are normally imbalanced which may reduce classification performance and reliability. To address these challenges, we proposed a new strategy that employs unsupervised novelty detection (ND) techniques to predict pMCI from the AD neuroimaging initiative non-imaging data. ND algorithms, including the k-nearest neighbours (kNN), k-means, Gaussian mixture model (GMM), isolation forest (IF) and extreme learning machine (ELM), were employed and compared with supervised binary support vector machine (SVM) and random forest (RF). We introduced optimisation with nested cross-validation and focused on maximising the adjusted F measure to ensure maximum generalisation of the proposed system by minimising false negative rates. Our extensive experimental results show that ND algorithms (0.727 ± 0.029 kNN, 0.7179 ± 0.0523 GMM, 0.7276 ± 0.0281 ELM) obtained comparable performance to supervised binary SVM (0.7359 ± 0.0451) with 20% stable MCI misclassification tolerance and were significantly better than RF (0.4771 ± 0.0167). Moreover, we found that the non-invasive, readily obtainable, and cost-effective cognitive and functional assessment was the most efficient predictor for predicting the pMCI within 2 years with ND techniques. Importantly, we presented an accessible and cost-effective approach to pMCI prediction, which does not require labelled data.
Collapse
|
19
|
Subbaraya SH, Parthasarathy SS. Probabilistic principal component analysis and long short-term memory classifier for automatic detection of Alzheimer’s disease using MRI brain images. INTERNATIONAL JOURNAL OF KNOWLEDGE-BASED AND INTELLIGENT ENGINEERING SYSTEMS 2022. [DOI: 10.3233/kes-220007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
The automatic recognition and classification of Alzheimer disease utilizing magnetic resonance imaging is a hard task, due to the complexity and variability of the size, location, texture and shape of the lesions. The objective of this study is to propose a proper feature dimensional reduction and classification approach to improve the performance of Alzheimer disease recognition and classification. At first, the input brain images were acquired from Open Access Series of Imaging Studies (OASIS) and National Institute of Mental Health and Neuro Sciences (NIMHANS) databases. Then, the image pre-processing and feature extraction were attained by applying Contrast Limited Adaptive Histogram Equalization (CLAHE) and Discrete Wavelet Transform (DWT) approach to denoise and extract the feature vectors from the images. In addition, Probabilistic Principal Component Analysis (PPCA) was used to diminish the extracted features dimension that effectively lessen the “curse of dimensionality” concern. At last, Long Short-Term Memory (LSTM) classifier was employed to classify the brain images as Alzheimer disease, normal, and Mild Cognitive Impairment (MCI). From the simulation outcome, the proposed system attained better performance compared to the existing systems and showed 3–11% improvement in recognition accuracy.
Collapse
|
20
|
Zhu J, Tan Y, Lin R, Miao J, Fan X, Zhu Y, Liang P, Gong J, He H. Efficient self-attention mechanism and structural distilling model for Alzheimer’s disease diagnosis. Comput Biol Med 2022; 147:105737. [DOI: 10.1016/j.compbiomed.2022.105737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2022] [Revised: 05/23/2022] [Accepted: 06/11/2022] [Indexed: 11/27/2022]
|
21
|
Radiomic Features Based Severity Prediction in Dementia MR Images Using Hybrid SSA-PSO Optimizer and Multi-class SVM Classifier. Ing Rech Biomed 2022. [DOI: 10.1016/j.irbm.2022.05.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
|
22
|
A CAD system design for Alzheimer's disease diagnosis using temporally consistent clustering and hybrid deep learning models. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103571] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
|
23
|
Transcranial Magnetic Stimulation Indices of Cortical Excitability Enhance the Prediction of Response to Pharmacotherapy in Late-Life Depression. BIOLOGICAL PSYCHIATRY. COGNITIVE NEUROSCIENCE AND NEUROIMAGING 2022; 7:265-275. [PMID: 34311121 PMCID: PMC8783923 DOI: 10.1016/j.bpsc.2021.07.005] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Revised: 06/16/2021] [Accepted: 07/14/2021] [Indexed: 11/23/2022]
Abstract
BACKGROUND Older adults with late-life depression (LLD) often experience incomplete or lack of response to first-line pharmacotherapy. The treatment of LLD could be improved using objective biological measures to predict response. Transcranial magnetic stimulation (TMS) can be used to measure cortical excitability, inhibition, and plasticity, which have been implicated in LLD pathophysiology and associated with brain stimulation treatment outcomes in younger adults with depression. TMS measures have not yet been investigated as predictors of treatment outcomes in LLD or pharmacotherapy outcomes in adults of any age with depression. METHODS We assessed whether pretreatment single-pulse and paired-pulse TMS measures, combined with clinical and demographic measures, predict venlafaxine treatment response in 76 outpatients with LLD. We compared the predictive performance of machine learning models including or excluding TMS predictors. RESULTS Two single-pulse TMS measures predicted venlafaxine response: cortical excitability (neuronal membrane excitability) and the variability of cortical excitability (dynamic fluctuations in excitability levels). In cross-validation, models using a combination of these TMS predictors, clinical markers of treatment resistance, and age classified patients with 73% ± 11% balanced accuracy (average correct classification rate of responders and nonresponders; permutation testing, p < .005); these models significantly outperformed (corrected t test, p = .025) models using clinical and demographic predictors alone (60% ± 10% balanced accuracy). CONCLUSIONS These preliminary findings suggest that single-pulse TMS measures of cortical excitability may be useful predictors of response to pharmacotherapy in LLD. Future studies are needed to confirm these findings and determine whether combining TMS predictors with other biomarkers further improves the accuracy of predicting LLD treatment outcome.
Collapse
|
24
|
Tufail AB, Ullah K, Khan RA, Shakir M, Khan MA, Ullah I, Ma YK, Ali MS. On Improved 3D-CNN-Based Binary and Multiclass Classification of Alzheimer's Disease Using Neuroimaging Modalities and Data Augmentation Methods. JOURNAL OF HEALTHCARE ENGINEERING 2022; 2022:1302170. [PMID: 35186220 PMCID: PMC8856791 DOI: 10.1155/2022/1302170] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/24/2021] [Revised: 01/17/2022] [Accepted: 01/20/2022] [Indexed: 12/15/2022]
Abstract
Alzheimer's disease (AD) is an irreversible illness of the brain impacting the functional and daily activities of elderly population worldwide. Neuroimaging sensory systems such as Magnetic Resonance Imaging (MRI) and Positron Emission Tomography (PET) measure the pathological changes in the brain associated with this disorder especially in its early stages. Deep learning (DL) architectures such as Convolutional Neural Networks (CNNs) are successfully used in recognition, classification, segmentation, detection, and other domains for data interpretation. Data augmentation schemes work alongside DL techniques and may impact the final task performance positively or negatively. In this work, we have studied and compared the impact of three data augmentation techniques on the final performances of CNN architectures in the 3D domain for the early diagnosis of AD. We have studied both binary and multiclass classification problems using MRI and PET neuroimaging modalities. We have found the performance of random zoomed in/out augmentation to be the best among all the augmentation methods. It is also observed that combining different augmentation methods may result in deteriorating performances on the classification tasks. Furthermore, we have seen that architecture engineering has less impact on the final classification performance in comparison to the data manipulation schemes. We have also observed that deeper architectures may not provide performance advantages in comparison to their shallower counterparts. We have further observed that these augmentation schemes do not alleviate the class imbalance issue.
Collapse
Affiliation(s)
- Ahsan Bin Tufail
- School of Electronics and Information Engineering, Harbin Institute of Technology, Harbin 150001, China
- Department of Electrical and Computer Engineering, COMSATS University Islamabad Sahiwal Campus, Sahiwal, Pakistan
| | - Kalim Ullah
- Department of Zoology, Kohat University of Science and Technology, Kohat 26000, Pakistan
| | - Rehan Ali Khan
- Department of Electrical Engineering, University of Science and Technology Bannu, Bannu 28100, Pakistan
| | - Mustafa Shakir
- Department of Electrical Engineering, Superior University, Lahore 54000, Pakistan
| | - Muhammad Abbas Khan
- Department of Electrical Engineering, Balochistan University of Information Technology,Engineering and Management Sciences, Quetta,Balochistan 87300, Pakistan
| | - Inam Ullah
- College of Internet of Things (IoT) Engineering, Hohai University (HHU), Changzhou Campus 213022, China
| | - Yong-Kui Ma
- School of Electronics and Information Engineering, Harbin Institute of Technology, Harbin 150001, China
| | - Md. Sadek Ali
- Communication Research Laboratory, Department of Information and Communication Technology, Islamic University, Kushtia-7003, Bangladesh
| |
Collapse
|
25
|
Diagnosis and classification of Alzheimer's disease by using a convolution neural network algorithm. Soft comput 2022. [DOI: 10.1007/s00500-022-06762-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
|
26
|
Balasubramanian K, Np A, K R. Prediction of neuro-degenerative disorders using sunflower optimisation algorithm and Kernel extreme learning machine: A case-study with Parkinson's and Alzheimer's disease. Proc Inst Mech Eng H 2021; 236:438-453. [PMID: 34923855 DOI: 10.1177/09544119211060989] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Parkinson's and Alzheimer's Disease are believed to be most prevalent and common in older people. Several data-mining approaches are employed on the neuro-degenerative data in predicting the disease. A novel method has been built and developed to diagnose Alzheimer's (AD) and Parkinson's (PD) in early stages, which includes image acquisition, pre-processing, feature extraction and selection, followed by classification. The challenge lies in selecting the optimal feature subset for classification. In this work, the Sunflower Optimisation Algorithm (SFO) is employed to select the optimal feature set, which is then fed to the Kernel Extreme Learning Machine (KELM) for classification. The method is tested on the Alzheimer's Disease Neuroimaging Initiative (ADNI) and local dataset for AD, the University of California, Irvine (UCI) machine learning repository and the Istanbul dataset for PD. Experimental outcomes have demonstrated a high accuracy level in both AD and PD diagnosis. For AD diagnosis, the highest classification rate is obtained for the AD versus NC classification using the ADNI dataset (99.32%) and local dataset (98.65%). For PD diagnosis, the highest accuracy of 99.52% and 99.45% is achieved on the UCI and Istanbul datasets, respectively. To show the robustness of the method, the method is compared with other similar methods of feature selection and classification with 10-fold cross-validation (CV) and with unseen data. The method proposed has an excellent prospect, bringing greater convenience to clinicians in making a better solid decision in clinical diagnosis of neuro-degenerative diseases.
Collapse
Affiliation(s)
| | - Ananthamoorthy Np
- Hindusthan College of Engineering and Technology, Coimbatore, Tamil Nadu, India
| | - Ramya K
- P A College of Engineering and Technology, Pollachi, Tamil Nadu, India
| |
Collapse
|
27
|
Khajehpiri B, Moghaddam HA, Forouzanfar M, Lashgari R, Ramos-Cejudo J, Osorio RS, Ardekani BA. Survival Analysis in Cognitively Normal Subjects and in Patients with Mild Cognitive Impairment Using a Proportional Hazards Model with Extreme Gradient Boosting Regression. J Alzheimers Dis 2021; 85:837-850. [PMID: 34864679 DOI: 10.3233/jad-215266] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
BACKGROUND Evaluating the risk of Alzheimer's disease (AD) in cognitively normal (CN) and patients with mild cognitive impairment (MCI) is extremely important. While MCI-to-AD progression risk has been studied extensively, few studies estimate CN-to-MCI conversion risk. The Cox proportional hazards (PH), a widely used survival analysis model, assumes a linear predictor-risk relationship. Generalizing the PH model to more complex predictor-risk relationships may increase risk estimation accuracy. OBJECTIVE The aim of this study was to develop a PH model using an Xgboost regressor, based on demographic, genetic, neuropsychiatric, and neuroimaging predictors to estimate risk of AD in patients with MCI, and the risk of MCI in CN subjects. METHODS We replaced the Cox PH linear model with an Xgboost regressor to capture complex interactions between predictors, and non-linear predictor-risk associations. We endeavored to limit model inputs to noninvasive and more widely available predictors in order to facilitate future applicability in a wider setting. RESULTS In MCI-to-AD (n = 882), the Xgboost model achieved a concordance index (C-index) of 84.5%. When the model was used for MCI risk prediction in CN (n = 100) individuals, the C-index was 73.3%. In both applications, the C-index was statistically significantly higher in the Xgboost in comparison to the Cox PH model. CONCLUSION Using non-linear regressors such as Xgboost improves AD dementia risk assessment in CN and MCI. It is possible to achieve reasonable risk stratification using predictors that are relatively low-cost in terms of time, invasiveness, and availability. Future strategies for improving AD dementia risk estimation are discussed.
Collapse
Affiliation(s)
- Boshra Khajehpiri
- Machine Vision and Medical Image Processing(MVMIP) Laboratory, Faculty of Electrical and Computer Engineering, K. N. Toosi University of Technology, Tehran, Iran
| | - Hamid Abrishami Moghaddam
- Machine Vision and Medical Image Processing(MVMIP) Laboratory, Faculty of Electrical and Computer Engineering, K. N. Toosi University of Technology, Tehran, Iran
| | - Mohamad Forouzanfar
- Machine Vision and Medical Image Processing(MVMIP) Laboratory, Faculty of Electrical and Computer Engineering, K. N. Toosi University of Technology, Tehran, Iran.,Department of Systems Engineering, École deTechnologie Supérieure, Université duQuébec, Montreal, Quebec, Canada
| | - Reza Lashgari
- Institute of Medical Science and Technology, Shahid Beheshti University, Tehran, Iran
| | - Jaime Ramos-Cejudo
- Department of Psychiatry, New York University(NYU) Grossman School of Medicine, New York, NY, USA
| | - Ricardo S Osorio
- TheNathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA.,Department of Psychiatry, New York University(NYU) Grossman School of Medicine, New York, NY, USA
| | - Babak A Ardekani
- TheNathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA
| | | |
Collapse
|
28
|
Yuan S, Li H, Wu J, Sun X. Classification of Mild Cognitive Impairment With Multimodal Data Using Both Labeled and Unlabeled Samples. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2021; 18:2281-2290. [PMID: 33471765 DOI: 10.1109/tcbb.2021.3053061] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Mild Cognitive Impairment (MCI) is a preclinical stage of Alzheimer's Disease (AD) and is clinical heterogeneity. The classification of MCI is crucial for the early diagnosis and treatment of AD. In this study, we investigated the potential of using both labeled and unlabeled samples from the Alzheimer's Disease Neuroimaging Initiative (ADNI) cohort to classify MCI through the multimodal co-training method. We utilized both structural magnetic resonance imaging (sMRI) data and genotype data of 364 MCI samples including 228 labeled and 136 unlabeled MCI samples from the ADNI-1 cohort. First, the selected quantitative trait (QT) features from sMRI data and SNP features from genotype data were used to build two initial classifiers on 228 labeled MCI samples. Then, the co-training method was implemented to obtain new labeled samples from 136 unlabeled MCI samples. Finally, the random forest algorithm was used to obtain a combined classifier to classify MCI patients in the independent ADNI-2 dataset. The experimental results showed that our proposed framework obtains an accuracy of 85.50 percent and an AUC of 0.825 for MCI classification, respectively, which showed that the combined utilization of sMRI and SNP data through the co-training method could significantly improve the performances of MCI classification.
Collapse
|
29
|
Agarwal D, Marques G, de la Torre-Díez I, Franco Martin MA, García Zapiraín B, Martín Rodríguez F. Transfer Learning for Alzheimer's Disease through Neuroimaging Biomarkers: A Systematic Review. SENSORS (BASEL, SWITZERLAND) 2021; 21:7259. [PMID: 34770565 PMCID: PMC8587338 DOI: 10.3390/s21217259] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Revised: 10/27/2021] [Accepted: 10/27/2021] [Indexed: 11/16/2022]
Abstract
Alzheimer's disease (AD) is a remarkable challenge for healthcare in the 21st century. Since 2017, deep learning models with transfer learning approaches have been gaining recognition in AD detection, and progression prediction by using neuroimaging biomarkers. This paper presents a systematic review of the current state of early AD detection by using deep learning models with transfer learning and neuroimaging biomarkers. Five databases were used and the results before screening report 215 studies published between 2010 and 2020. After screening, 13 studies met the inclusion criteria. We noted that the maximum accuracy achieved to date for AD classification is 98.20% by using the combination of 3D convolutional networks and local transfer learning, and that for the prognostic prediction of AD is 87.78% by using pre-trained 3D convolutional network-based architectures. The results show that transfer learning helps researchers in developing a more accurate system for the early diagnosis of AD. However, there is a need to consider some points in future research, such as improving the accuracy of the prognostic prediction of AD, exploring additional biomarkers such as tau-PET and amyloid-PET to understand highly discriminative feature representation to separate similar brain patterns, managing the size of the datasets due to the limited availability.
Collapse
Affiliation(s)
- Deevyankar Agarwal
- Department of Signal Theory and Communications and Telematics Engineering, University of Valladolid, Paseo de Belén 15, 47011 Valladolid, Spain; (G.M.); (I.d.l.T.-D.)
| | - Gonçalo Marques
- Department of Signal Theory and Communications and Telematics Engineering, University of Valladolid, Paseo de Belén 15, 47011 Valladolid, Spain; (G.M.); (I.d.l.T.-D.)
- Polytechnic of Coimbra, ESTGOH, Rua General Santos Costa, 3400-124 Oliveira do Hospital, Portugal
| | - Isabel de la Torre-Díez
- Department of Signal Theory and Communications and Telematics Engineering, University of Valladolid, Paseo de Belén 15, 47011 Valladolid, Spain; (G.M.); (I.d.l.T.-D.)
| | - Manuel A. Franco Martin
- Psychiatric Department, University Rio Hortega Hospital–Valladolid, 47011 Valladolid, Spain;
| | - Begoña García Zapiraín
- eVIDA Laboratory, University of Deusto, Avenida de las Universidades 24, 48007 Bilbao, Spain;
| | - Francisco Martín Rodríguez
- Advanced Clinical Simulation Center, School of Medicine, University of Valladolid, 47011 Valladolid, Spain;
| |
Collapse
|
30
|
Karami V, Nittari G, Traini E, Amenta F. An Optimized Decision Tree with Genetic Algorithm Rule-Based Approach to Reveal the Brain's Changes During Alzheimer's Disease Dementia. J Alzheimers Dis 2021; 84:1577-1584. [PMID: 34719494 DOI: 10.3233/jad-210626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
BACKGROUND It is desirable to achieve acceptable accuracy for computer aided diagnosis system (CADS) to disclose the dementia-related consequences on the brain. Therefore, assessing and measuring these impacts is fundamental in the diagnosis of dementia. OBJECTIVE This study introduces a new CADS for deep learning of magnetic resonance image (MRI) data to identify changes in the brain during Alzheimer's disease (AD) dementia. METHODS The proposed algorithm employed a decision tree with genetic algorithm rule-based optimization to classify input data which were extracted from MRI. This pipeline is applied to the healthy and AD subjects of the Open Access Series of Imaging Studies (OASIS). RESULTS Final evaluation of the CADS and its comparison with other systems supported the potential of the proposed model as a novel tool for investigating the progression of AD and its great ability as an innovative computerized help to facilitate the decision-making procedure for the diagnosis of AD. CONCLUSION The one-second time response, together with the identified high accurate performance, suggests that this system could be useful in future cognitive and computational neuroscience studies.
Collapse
Affiliation(s)
- Vania Karami
- Department of Neurology and Neurosurgery, MontrealNeurological Institute-Hospital (MNI), McGill University, Montreal, Canada
| | - Giulio Nittari
- School of PharmaceuticalSciences and Health Products, University of Camerino, Camerino (MC), Italy
| | - Enea Traini
- School of PharmaceuticalSciences and Health Products, University of Camerino, Camerino (MC), Italy
| | - Francesco Amenta
- School of PharmaceuticalSciences and Health Products, University of Camerino, Camerino (MC), Italy
| |
Collapse
|
31
|
Priyanka A, Ganesan K. Hippocampus segmentation and classification for dementia analysis using pre-trained neural network models. BIOMED ENG-BIOMED TE 2021; 66:581-592. [PMID: 34626530 DOI: 10.1515/bmt-2021-0070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Accepted: 09/08/2021] [Indexed: 11/15/2022]
Abstract
The diagnostic and clinical overlap of early mild cognitive impairment (EMCI), mild cognitive impairment (MCI), late mild cognitive impairment (LMCI) and Alzheimer disease (AD) is a vital oncological issue in dementia disorder. This study is designed to examine Whole brain (WB), grey matter (GM) and Hippocampus (HC) morphological variation and identify the prominent biomarkers in MR brain images of demented subjects to understand the severity progression. Curve evolution based on shape constraint is carried out to segment the complex brain structure such as HC and GM. Pre-trained models are used to observe the severity variation in these regions. This work is evaluated on ADNI database. The outcome of the proposed work shows that curve evolution method could segment HC and GM regions with better correlation. Pre-trained models are able to show significant severity difference among WB, GM and HC regions for the considered classes. Further, prominent variation is observed between AD vs. EMCI, AD vs. MCI and AD vs. LMCI in the whole brain, GM and HC. It is concluded that AlexNet model for HC region result in better classification for AD vs. EMCI, AD vs. MCI and AD vs. LMCI with an accuracy of 93, 78.3 and 91% respectively.
Collapse
Affiliation(s)
- Ahana Priyanka
- Department of Electronics Engineering, Madras Institute of Technology, Chennai, India
| | - Kavitha Ganesan
- Department of Electronics Engineering, Madras Institute of Technology, Chennai, India
| |
Collapse
|
32
|
Kaplan E, Dogan S, Tuncer T, Baygin M, Altunisik E. Feed-forward LPQNet based Automatic Alzheimer's Disease Detection Model. Comput Biol Med 2021; 137:104828. [PMID: 34507154 DOI: 10.1016/j.compbiomed.2021.104828] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Revised: 08/16/2021] [Accepted: 09/01/2021] [Indexed: 12/19/2022]
Abstract
BACKGROUND Alzheimer's disease (AD) is one of the most commonly seen brain ailments worldwide. Therefore, many researches have been presented about AD detection and cure. In addition, machine learning models have also been proposed to detect AD promptly. MATERIALS AND METHOD In this work, a new brain image dataset was collected. This dataset contains two categories, and these categories are healthy and AD. This dataset was collected from 1070 subjects. This work presents an automatic AD detection model to detect AD using brain images automatically. The presented model is called a feed-forward local phase quantization network (LPQNet). LPQNet consists of (i) multilevel feature generation based on LPQ and average pooling, (ii) feature selection using neighborhood component analysis (NCA), and (iii) classification phases. The prime objective of the presented LPQNet is to reach high accuracy with low computational complexity. LPQNet generates features on six levels. Therefore, 256 × 6 = 1536 features are generated from an image, and the most important 256 out 1536 features are selected. The selected 256 features are classified on the conventional classifiers to denote the classification capability of the generated and selected features by LPQNet. RESULTS The presented LPQNet was tested on three image datasets to demonstrate the universal classification ability of the LPQNet. The proposed LPQNet attained 99.68%, 100%, and 99.64% classification accuracy on the collected AD image dataset, the Harvard Brain Atlas AD dataset, and the Kaggle AD dataset. Moreover, LPQNet attained 99.62% accuracy on the Kaggle AD dataset using four classes. CONCLUSIONS Moreover, the calculated results from LPQNet are compared to other automatic AD detection models. Comparisons, results, and findings clearly denote the superiority of the presented model. In addition, a new intelligent AD detector application can be developed for use in magnetic resonance (MR) and computed tomography (CT) devices. By using the developed automated AD detector, new generation intelligence MR and CT devices can be developed.
Collapse
Affiliation(s)
- Ela Kaplan
- Department of Radiology, Adiyaman Training and Research Hospital, Adiyaman, Turkey.
| | - Sengul Dogan
- Department of Digital Forensics Engineering, College of Technology, Firat University, Elazig, Turkey.
| | - Turker Tuncer
- Department of Digital Forensics Engineering, College of Technology, Firat University, Elazig, Turkey.
| | - Mehmet Baygin
- Department of Computer Engineering, College of Engineering, Ardahan University, Ardahan, Turkey.
| | - Erman Altunisik
- Department of Neurology, Adiyaman University Medicine Faculty, Adiyaman, Turkey.
| |
Collapse
|
33
|
Detection and Classification of Alzheimer’s disease from cognitive impairment with resting-state fMRI. Neural Comput Appl 2021. [DOI: 10.1007/s00521-021-06436-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
|
34
|
Solanes A, Palau P, Fortea L, Salvador R, González-Navarro L, Llach CD, Valentí M, Vieta E, Radua J. Biased accuracy in multisite machine-learning studies due to incomplete removal of the effects of the site. Psychiatry Res Neuroimaging 2021; 314:111313. [PMID: 34098248 DOI: 10.1016/j.pscychresns.2021.111313] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/04/2020] [Revised: 04/24/2021] [Accepted: 05/27/2021] [Indexed: 01/08/2023]
Abstract
Brain MRI researchers conducting multisite studies, such as within the ENIGMA Consortium, are very aware of the importance of controlling the effects of the site (EoS) in the statistical analysis. Conversely, authors of the novel machine-learning MRI studies may remove the EoS when training the machine-learning models but not control them when estimating the models' accuracy, potentially leading to severely biased estimates. We show examples from a toy simulation study and real MRI data in which we remove the EoS from both the "training set" and the "test set" during the training and application of the model. However, the accuracy is still inflated (or occasionally shrunk) unless we further control the EoS during the estimation of the accuracy. We also provide several methods for controlling the EoS during the estimation of the accuracy, and a simple R package ("multisite.accuracy") that smoothly does this task for several accuracy estimates (e.g., sensitivity/specificity, area under the curve, correlation, hazard ratio, etc.).
Collapse
Affiliation(s)
- Aleix Solanes
- Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain; Department of Psychiatry and Forensic Medicine, Autonomous University of Barcelona, Barcelona, Spain
| | - Pol Palau
- FIDMAG Research Foundation, Barcelona, Spain; CASM Benito Menni Granollers-Hospital General de Granollers, Barcelona, Spain
| | - Lydia Fortea
- Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain; Biomedical Network Research Centre on Mental Health (CIBERSAM), Instituto de Salud Carlos III, Madrid, Spain; Institute of Neurosciences, University of Barcelona, Barcelona, Spain
| | - Raymond Salvador
- FIDMAG Research Foundation, Barcelona, Spain; Biomedical Network Research Centre on Mental Health (CIBERSAM), Instituto de Salud Carlos III, Madrid, Spain
| | | | - Cristian Daniel Llach
- Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain; Biomedical Network Research Centre on Mental Health (CIBERSAM), Instituto de Salud Carlos III, Madrid, Spain; Institute of Neurosciences, University of Barcelona, Barcelona, Spain; Barcelona Bipolar Disorders and Depressive Unit, Institute of Neurosciences, Hospital Clinic, Barcelona, Spain
| | - Marc Valentí
- Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain; Biomedical Network Research Centre on Mental Health (CIBERSAM), Instituto de Salud Carlos III, Madrid, Spain; Institute of Neurosciences, University of Barcelona, Barcelona, Spain; Barcelona Bipolar Disorders and Depressive Unit, Institute of Neurosciences, Hospital Clinic, Barcelona, Spain
| | - Eduard Vieta
- Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain; Biomedical Network Research Centre on Mental Health (CIBERSAM), Instituto de Salud Carlos III, Madrid, Spain; Institute of Neurosciences, University of Barcelona, Barcelona, Spain; Barcelona Bipolar Disorders and Depressive Unit, Institute of Neurosciences, Hospital Clinic, Barcelona, Spain
| | - Joaquim Radua
- Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain; Biomedical Network Research Centre on Mental Health (CIBERSAM), Instituto de Salud Carlos III, Madrid, Spain; Department of Psychosis Studies, Institute of Psychiatry, Psychology, and Neuroscience, King's College London, London, United Kingdom; Centre for Psychiatric Research and Education, Department of Clinical Neuroscience, Karolinska Institutet, Stockholm, Sweden.
| |
Collapse
|
35
|
El-Gamal FEZA, Elmogy M, Mahmoud A, Shalaby A, Switala AE, Ghazal M, Soliman H, Atwan A, Alghamdi NS, Barnes GN, El-Baz A. A Personalized Computer-Aided Diagnosis System for Mild Cognitive Impairment (MCI) Using Structural MRI (sMRI). SENSORS (BASEL, SWITZERLAND) 2021; 21:5416. [PMID: 34450858 PMCID: PMC8400990 DOI: 10.3390/s21165416] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Revised: 07/28/2021] [Accepted: 08/03/2021] [Indexed: 12/31/2022]
Abstract
Alzheimer's disease (AD) is a neurodegenerative disorder that targets the central nervous system (CNS). Statistics show that more than five million people in America face this disease. Several factors hinder diagnosis at an early stage, in particular, the divergence of 10-15 years between the onset of the underlying neuropathological changes and patients becoming symptomatic. This study surveyed patients with mild cognitive impairment (MCI), who were at risk of conversion to AD, with a local/regional-based computer-aided diagnosis system. The described system allowed for visualization of the disorder's effect on cerebral cortical regions individually. The CAD system consists of four steps: (1) preprocess the scans and extract the cortex, (2) reconstruct the cortex and extract shape-based features, (3) fuse the extracted features, and (4) perform two levels of diagnosis: cortical region-based followed by global. The experimental results showed an encouraging performance of the proposed system when compared with related work, with a maximum accuracy of 86.30%, specificity 88.33%, and sensitivity 84.88%. Behavioral and cognitive correlations identified brain regions involved in language, executive function/cognition, and memory in MCI subjects, which regions are also involved in the neuropathology of AD.
Collapse
Affiliation(s)
- Fatma El-Zahraa A. El-Gamal
- Bioengineering Department, University of Louisville, Louisville, KY 40292, USA; (F.E.-Z.A.E.-G.); (A.M.); (A.S.); (A.E.S.); (A.E.-B.)
- Information Technology Department, Faculty of Computers and Information, Mansoura University, Mansoura 35516, Egypt; (M.E.); (H.S.); (A.A.)
| | - Mohammed Elmogy
- Information Technology Department, Faculty of Computers and Information, Mansoura University, Mansoura 35516, Egypt; (M.E.); (H.S.); (A.A.)
| | - Ali Mahmoud
- Bioengineering Department, University of Louisville, Louisville, KY 40292, USA; (F.E.-Z.A.E.-G.); (A.M.); (A.S.); (A.E.S.); (A.E.-B.)
| | - Ahmed Shalaby
- Bioengineering Department, University of Louisville, Louisville, KY 40292, USA; (F.E.-Z.A.E.-G.); (A.M.); (A.S.); (A.E.S.); (A.E.-B.)
| | - Andrew E. Switala
- Bioengineering Department, University of Louisville, Louisville, KY 40292, USA; (F.E.-Z.A.E.-G.); (A.M.); (A.S.); (A.E.S.); (A.E.-B.)
| | - Mohammed Ghazal
- Department of Electrical and Computer Engineering, Abu Dhabi University, Abu Dhabi 59911, United Arab Emirates;
| | - Hassan Soliman
- Information Technology Department, Faculty of Computers and Information, Mansoura University, Mansoura 35516, Egypt; (M.E.); (H.S.); (A.A.)
| | - Ahmed Atwan
- Information Technology Department, Faculty of Computers and Information, Mansoura University, Mansoura 35516, Egypt; (M.E.); (H.S.); (A.A.)
| | - Norah Saleh Alghamdi
- College of Computer and Information Science, Princess Nourah Bint Abdulrahman University, Riyadh 11564, Saudi Arabia
| | - Gregory Neal Barnes
- Department of Neurology, University of Louisville, Louisville, KY 40292, USA;
| | - Ayman El-Baz
- Bioengineering Department, University of Louisville, Louisville, KY 40292, USA; (F.E.-Z.A.E.-G.); (A.M.); (A.S.); (A.E.S.); (A.E.-B.)
| |
Collapse
|
36
|
Zhang T, Liao Q, Zhang D, Zhang C, Yan J, Ngetich R, Zhang J, Jin Z, Li L. Predicting MCI to AD Conversation Using Integrated sMRI and rs-fMRI: Machine Learning and Graph Theory Approach. Front Aging Neurosci 2021; 13:688926. [PMID: 34421570 PMCID: PMC8375594 DOI: 10.3389/fnagi.2021.688926] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Accepted: 06/23/2021] [Indexed: 11/28/2022] Open
Abstract
BACKGROUND Graph theory and machine learning have been shown to be effective ways of classifying different stages of Alzheimer's disease (AD). Most previous studies have only focused on inter-subject classification with single-mode neuroimaging data. However, whether this classification can truly reflect the changes in the structure and function of the brain region in disease progression remains unverified. In the current study, we aimed to evaluate the classification framework, which combines structural Magnetic Resonance Imaging (sMRI) and resting-state functional Magnetic Resonance Imaging (rs-fMRI) metrics, to distinguish mild cognitive impairment non-converters (MCInc)/AD from MCI converters (MCIc) by using graph theory and machine learning. METHODS With the intra-subject (MCInc vs. MCIc) and inter-subject (MCIc vs. AD) design, we employed cortical thickness features, structural brain network features, and sub-frequency (full-band, slow-4, slow-5) functional brain network features for classification. Three feature selection methods [random subset feature selection algorithm (RSFS), minimal redundancy maximal relevance (mRMR), and sparse linear regression feature selection algorithm based on stationary selection (SS-LR)] were used respectively to select discriminative features in the iterative combinations of MRI and network measures. Then support vector machine (SVM) classifier with nested cross-validation was employed for classification. We also compared the performance of multiple classifiers (Random Forest, K-nearest neighbor, Adaboost, SVM) and verified the reliability of our results by upsampling. RESULTS We found that in the classifications of MCIc vs. MCInc, and MCIc vs. AD, the proposed RSFS algorithm achieved the best accuracies (84.71, 89.80%) than the other algorithms. And the high-sensitivity brain regions found with the two classification groups were inconsistent. Specifically, in MCIc vs. MCInc, the high-sensitivity brain regions associated with both structural and functional features included frontal, temporal, caudate, entorhinal, parahippocampal, and calcarine fissure and surrounding cortex. While in MCIc vs. AD, the high-sensitivity brain regions associated only with functional features included frontal, temporal, thalamus, olfactory, and angular. CONCLUSIONS These results suggest that our proposed method could effectively predict the conversion of MCI to AD, and the inconsistency of specific brain regions provides a novel insight for clinical AD diagnosis.
Collapse
Affiliation(s)
| | | | | | | | | | | | | | - Zhenlan Jin
- Key Laboratory for NeuroInformation of Ministry of Education, High-Field Magnetic Resonance Brain Imaging Key Laboratory of Sichuan Province, Center for Information in Medicine, School of Life Sciences and Technology, University of Electronic Science and Technology of China, Chengdu, China
| | - Ling Li
- Key Laboratory for NeuroInformation of Ministry of Education, High-Field Magnetic Resonance Brain Imaging Key Laboratory of Sichuan Province, Center for Information in Medicine, School of Life Sciences and Technology, University of Electronic Science and Technology of China, Chengdu, China
| |
Collapse
|
37
|
Akramifard H, Balafar MA, Razavi SN, Ramli AR. Early Detection of Alzheimer's Disease Based on Clinical Trials, Three-Dimensional Imaging Data, and Personal Information Using Autoencoders. JOURNAL OF MEDICAL SIGNALS & SENSORS 2021; 11:120-130. [PMID: 34268100 PMCID: PMC8253314 DOI: 10.4103/jmss.jmss_11_20] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Revised: 03/16/2019] [Accepted: 08/30/2020] [Indexed: 12/02/2022]
Abstract
Background: A timely diagnosis of Alzheimer's disease (AD) is crucial to obtain more practical treatments. In this article, a novel approach using Auto-Encoder Neural Networks (AENN) for early detection of AD was proposed. Method: The proposed method mainly deals with the classification of multimodal data and the imputation of missing data. The data under study involve the MiniMental State Examination, magnetic resonance imaging, positron emission tomography, cerebrospinal fluid data, and personal information. Natural logarithm was used for normalizing the data. The Auto-Encoder Neural Networks was used for imputing missing data. Principal component analysis algorithm was used for reducing dimensionality of data. Support Vector Machine (SVM) was used as classifier. The proposed method was evaluated using Alzheimer's Disease Neuroimaging Initiative (ADNI) database. Then, 10fold crossvalidation was used to audit the detection accuracy of the method. Results: The effectiveness of the proposed approach was studied under several scenarios considering 705 cases of ADNI database. In three binary classification problems, that is AD vs. normal controls (NCs), mild cognitive impairment (MCI) vs. NC, and MCI vs. AD, we obtained the accuracies of 95.57%, 83.01%, and 78.67%, respectively. Conclusion: Experimental results revealed that the proposed method significantly outperformed most of the stateoftheart methods.
Collapse
Affiliation(s)
- Hamid Akramifard
- Department of Software Engineering, Faculty of Electrical and Computer Engineering, University of Tabriz, East Azerbaijan, Tabriz, Iran
| | - Mohammad Ali Balafar
- Department of Software Engineering, Faculty of Electrical and Computer Engineering, University of Tabriz, East Azerbaijan, Tabriz, Iran
| | - Seyed Naser Razavi
- Department of Software Engineering, Faculty of Electrical and Computer Engineering, University of Tabriz, East Azerbaijan, Tabriz, Iran
| | - Abd Rahman Ramli
- Department of Software Engineering, Faculty of Engineering, University Putra Malaysia, Selangor, Malaysia
| |
Collapse
|
38
|
Ma Z, Jing B, Li Y, Yan H, Li Z, Ma X, Zhuo Z, Wei L, Li H. Identifying Mild Cognitive Impairment with Random Forest by Integrating Multiple MRI Morphological Metrics. J Alzheimers Dis 2021; 73:991-1002. [PMID: 31884464 DOI: 10.3233/jad-190715] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Mild cognitive impairment (MCI) exhibits a high risk of progression to Alzheimer's disease (AD), and it is commonly deemed as the precursor of AD. It is important to find effective and robust ways for the early diagnosis of MCI. In this paper, a random forest-based method combining multiple morphological metrics was proposed to identify MCI from normal controls (NC). Voxel-based morphometry, deformation-based morphometry, and surface-based morphometry were utilized to extract morphological metrics such as gray matter volume, Jacobian determinant value, cortical thickness, gyrification index, sulcus depth, and fractal dimension. An initial discovery dataset (56 MCI/55 NC) from the ADNI were used to construct classification models and the performances were testified with 10-fold cross validation. To test the generalization of the proposed method, two extra validation datasets including longitudinal ADNI data (30 MCI/16 NC) and collected data from Xuanwu Hospital (27 MCI/32 NC) were employed respectively to evaluate the performance. No matter whether testing was done on the discovery dataset or the extra validation datasets, the accuracies were about 80% with the combined morphological metrics, which were significantly superior to single metric (accuracy: 45% ∼76%) and also displayed good generalization across datasets. Additionally, gyrification index and cortical thickness derived from surface-based morphometry outperformed other features in MCI identification, suggesting they were some key morphological biomarkers for early MCI diagnosis. Combining the multiple morphological metrics together resulted in a significantly better and reliable identification model, which may be helpful to assist in the clinical diagnosis of MCI.
Collapse
Affiliation(s)
- Zhe Ma
- School of Biomedical Engineering, Capital Medical University, Beijing, China.,Beijing Key Laboratory of Fundamental Research on Biomechanics in Clinical Application, Capital Medical University, Beijing, China
| | - Bin Jing
- School of Biomedical Engineering, Capital Medical University, Beijing, China.,Beijing Key Laboratory of Fundamental Research on Biomechanics in Clinical Application, Capital Medical University, Beijing, China
| | - Yuxia Li
- Department of Neurology, XuanWu Hospital of Capital Medical University, Beijing, China
| | - Huagang Yan
- School of Biomedical Engineering, Capital Medical University, Beijing, China.,Beijing Key Laboratory of Fundamental Research on Biomechanics in Clinical Application, Capital Medical University, Beijing, China
| | - Zhaoxia Li
- School of Chinese Medicine, Capital Medical University, Beijing, China
| | - Xiangyu Ma
- School of Biomedical Engineering, Capital Medical University, Beijing, China.,Beijing Key Laboratory of Fundamental Research on Biomechanics in Clinical Application, Capital Medical University, Beijing, China
| | - Zhizheng Zhuo
- School of Biomedical Engineering, Capital Medical University, Beijing, China.,Beijing Key Laboratory of Fundamental Research on Biomechanics in Clinical Application, Capital Medical University, Beijing, China
| | - Lijiang Wei
- School of Biomedical Engineering, Capital Medical University, Beijing, China.,Beijing Key Laboratory of Fundamental Research on Biomechanics in Clinical Application, Capital Medical University, Beijing, China
| | - Haiyun Li
- School of Biomedical Engineering, Capital Medical University, Beijing, China.,Beijing Key Laboratory of Fundamental Research on Biomechanics in Clinical Application, Capital Medical University, Beijing, China
| | | |
Collapse
|
39
|
Xu M, Sanz DL, Garces P, Maestu F, Li Q, Pantazis D. A Graph Gaussian Embedding Method for Predicting Alzheimer's Disease Progression With MEG Brain Networks. IEEE Trans Biomed Eng 2021; 68:1579-1588. [PMID: 33400645 PMCID: PMC8162933 DOI: 10.1109/tbme.2021.3049199] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Characterizing the subtle changes of functional brain networks associated with the pathological cascade of Alzheimer's disease (AD) is important for early diagnosis and prediction of disease progression prior to clinical symptoms. We developed a new deep learning method, termed multiple graph Gaussian embedding model (MG2G), which can learn highly informative network features by mapping high-dimensional resting-state brain networks into a low-dimensional latent space. These latent distribution-based embeddings enable a quantitative characterization of subtle and heterogeneous brain connectivity patterns at different regions, and can be used as input to traditional classifiers for various downstream graph analytic tasks, such as AD early stage prediction, and statistical evaluation of between-group significant alterations across brain regions. We used MG2G to detect the intrinsic latent dimensionality of MEG brain networks, predict the progression of patients with mild cognitive impairment (MCI) to AD, and identify brain regions with network alterations related to MCI.
Collapse
|
40
|
Zhao X, Ang CKE, Acharya UR, Cheong KH. Application of Artificial Intelligence techniques for the detection of Alzheimer’s disease using structural MRI images. Biocybern Biomed Eng 2021. [DOI: 10.1016/j.bbe.2021.02.006] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
|
41
|
Xiao R, Cui X, Qiao H, Zheng X, Zhang Y, Zhang C, Liu X. Early diagnosis model of Alzheimer’s disease based on sparse logistic regression with the generalized elastic net. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2020.102362] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
|
42
|
AbdulAzeem Y, Bahgat WM, Badawy M. A CNN based framework for classification of Alzheimer’s disease. Neural Comput Appl 2021. [DOI: 10.1007/s00521-021-05799-w] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
|
43
|
Abuhmed T, El-Sappagh S, Alonso JM. Robust hybrid deep learning models for Alzheimer’s progression detection. Knowl Based Syst 2021. [DOI: 10.1016/j.knosys.2020.106688] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
|
44
|
Herzog NJ, Magoulas GD. Brain Asymmetry Detection and Machine Learning Classification for Diagnosis of Early Dementia. SENSORS 2021; 21:s21030778. [PMID: 33498908 PMCID: PMC7865614 DOI: 10.3390/s21030778] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/27/2020] [Revised: 01/20/2021] [Accepted: 01/21/2021] [Indexed: 11/30/2022]
Abstract
Early identification of degenerative processes in the human brain is considered essential for providing proper care and treatment. This may involve detecting structural and functional cerebral changes such as changes in the degree of asymmetry between the left and right hemispheres. Changes can be detected by computational algorithms and used for the early diagnosis of dementia and its stages (amnestic early mild cognitive impairment (EMCI), Alzheimer’s Disease (AD)), and can help to monitor the progress of the disease. In this vein, the paper proposes a data processing pipeline that can be implemented on commodity hardware. It uses features of brain asymmetries, extracted from MRI of the Alzheimer’s Disease Neuroimaging Initiative (ADNI) database, for the analysis of structural changes, and machine learning classification of the pathology. The experiments provide promising results, distinguishing between subjects with normal cognition (NC) and patients with early or progressive dementia. Supervised machine learning algorithms and convolutional neural networks tested are reaching an accuracy of 92.5% and 75.0% for NC vs. EMCI, and 93.0% and 90.5% for NC vs. AD, respectively. The proposed pipeline offers a promising low-cost alternative for the classification of dementia and can be potentially useful to other brain degenerative disorders that are accompanied by changes in the brain asymmetries.
Collapse
Affiliation(s)
- Nitsa J. Herzog
- Department of Computer Science, Birkbeck College, University of London, London WC1E 7HZ, UK;
| | - George D. Magoulas
- Department of Computer Science, Birkbeck College, University of London, London WC1E 7HZ, UK;
- Birkbeck Knowledge Lab, University of London, London WC1E 7HZ, UK
- Correspondence:
| |
Collapse
|
45
|
Feng J, Zhang SW, Chen L, Xia J. Alzheimer’s disease classification using features extracted from nonsubsampled contourlet subband-based individual networks. Neurocomputing 2021. [DOI: 10.1016/j.neucom.2020.09.012] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
|
46
|
Platero C, Tobar MC. Predicting Alzheimer's conversion in mild cognitive impairment patients using longitudinal neuroimaging and clinical markers. Brain Imaging Behav 2020; 15:1728-1738. [PMID: 33169305 DOI: 10.1007/s11682-020-00366-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Patients with mild cognitive impairment (MCI) have a high risk for conversion to Alzheimer's disease (AD). Early diagnose of AD in MCI subjects could help to slow or halt the disease progression. Selecting a set of relevant markers from multimodal data to predict conversion from MCI to probable AD has become a challenging task. The aim of this paper is to quantify the impact of longitudinal predictive models with single- or multisource data for predicting MCI-to-AD conversion and identifying a very small subset of features that are highly predictive of conversion. We developed predictive models of MCI-to-AD progression that combine magnetic resonance imaging (MRI)-based markers (cortical thickness and volume of subcortical structures) with neuropsychological tests. These models were built with longitudinal data and validated using baseline values. By using a linear mixed effects approach, we modeled the longitudinal trajectories of the markers. A set of longitudinal features potentially discriminating between MCI subjects who convert to dementia and those who remain stable over a period of 3 years was obtained. Classifier were trained using the marginal longitudinal trajectory residues from the selected features. Our best models predicted conversion with 77% accuracy at baseline (AUC = 0.855, 84% sensitivity, 70% specificity). As more visits were available, longitudinal predictive models improved their predictions with 84% accuracy (AUC = 0.912, 83% sensitivity, 84% specificity). The proposed approach was developed, trained and evaluated using the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset with a total of 2491 visits from 610 subjects.
Collapse
Affiliation(s)
- Carlos Platero
- Health Science Technology Group, Universidad Politécnica de Madrid, Ronda de Valencia 3, 28012, Madrid, Spain.
| | - M Carmen Tobar
- Health Science Technology Group, Universidad Politécnica de Madrid, Ronda de Valencia 3, 28012, Madrid, Spain
| |
Collapse
|
47
|
Feature Selection Model based on EEG Signals for Assessing the Cognitive Workload in Drivers. SENSORS 2020; 20:s20205881. [PMID: 33080866 PMCID: PMC7589097 DOI: 10.3390/s20205881] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Revised: 10/09/2020] [Accepted: 10/13/2020] [Indexed: 11/17/2022]
Abstract
In recent years, research has focused on generating mechanisms to assess the levels of subjects’ cognitive workload when performing various activities that demand high concentration levels, such as driving a vehicle. These mechanisms have implemented several tools for analyzing the cognitive workload, and electroencephalographic (EEG) signals have been most frequently used due to their high precision. However, one of the main challenges in implementing the EEG signals is finding appropriate information for identifying cognitive states. Here, we present a new feature selection model for pattern recognition using information from EEG signals based on machine learning techniques called GALoRIS. GALoRIS combines Genetic Algorithms and Logistic Regression to create a new fitness function that identifies and selects the critical EEG features that contribute to recognizing high and low cognitive workloads and structures a new dataset capable of optimizing the model’s predictive process. We found that GALoRIS identifies data related to high and low cognitive workloads of subjects while driving a vehicle using information extracted from multiple EEG signals, reducing the original dataset by more than 50% and maximizing the model’s predictive capacity, achieving a precision rate greater than 90%.
Collapse
|
48
|
Luo C, Li M, Qin R, Chen H, Huang L, Yang D, Ye Q, Liu R, Xu Y, Zhao H, Bai F. Long Longitudinal Tract Lesion Contributes to the Progression of Alzheimer's Disease. Front Neurol 2020; 11:503235. [PMID: 33178095 PMCID: PMC7597387 DOI: 10.3389/fneur.2020.503235] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Accepted: 08/13/2020] [Indexed: 11/16/2022] Open
Abstract
Background: The degenerative pattern of white matter (WM) microstructures during Alzheimer's disease (AD) and its relationship with cognitive function have not yet been clarified. The present research aimed to explore the alterations of the WM microstructure and its impact on amnestic mild cognitive (aMCI) and AD patients. Mechanical learning methods were used to explore the validity of WM microstructure lesions on the classification in AD spectrum disease. Methods: Neuropsychological data and diffusion tensor imaging (DTI) images were collected from 28 AD subjects, 31 aMCI subjects, and 27 normal controls (NC). Tract-based spatial statistics (TBSS) were used to extract diffusion parameters in WM tracts. We performed ANOVA analysis to compare diffusion parameters and clinical features among the three groups. Partial correlation analysis was used to explore the relationship between diffusion metrics and cognitive functions controlling for age, gender, and years of education. Additionally, we performed the support vector machine (SVM) classification to determine the discriminative ability of DTI metrics in the differentiation of aMCI and AD patients from controls. Results: As compared to controls or aMCI patients, AD patients displayed widespread WM lesions, including in the inferior longitudinal fasciculus, inferior fronto-occipital fasciculi, and superior longitudinal fasciculus. Significant correlations between fractional anisotropy (FA), mean diffusivity (MD), and radial diffusion (RD) of the long longitudinal tract and memory deficits were found in aMCI and AD groups, respectively. Furthermore, through SVM classification, we found DTI indicators generated by FA and MD parameters can effectively distinguish AD patients from the control group with accuracy rates of up to 89 and 85%, respectively. Conclusion: The WM microstructure is extensively disrupted in AD patients, and the WM integrity of the long longitudinal tract is closely related to memory, which would hold potential value for monitoring the progression of AD. The method of classification based on SVM and WM damage features may be objectively helpful to the classification of AD diseases.
Collapse
Affiliation(s)
- Caimei Luo
- The State Key Laboratory of Pharmaceutical Biotechnology, Department of Neurology, Affiliated Drum Tower Hospital of Medical School, Institute of Brain Science, Nanjing University, Nanjing, China.,Jiangsu Key Laboratory for Molecular Medicine, Medical School of Nanjing University, Nanjing, China.,Jiangsu Province Stroke Center for Diagnosis and Therapy, Nanjing, China.,Nanjing Neuropsychiatry Clinic Medical Center, Nanjing, China
| | - Mengchun Li
- The State Key Laboratory of Pharmaceutical Biotechnology, Department of Neurology, Affiliated Drum Tower Hospital of Medical School, Institute of Brain Science, Nanjing University, Nanjing, China.,Jiangsu Key Laboratory for Molecular Medicine, Medical School of Nanjing University, Nanjing, China.,Jiangsu Province Stroke Center for Diagnosis and Therapy, Nanjing, China.,Nanjing Neuropsychiatry Clinic Medical Center, Nanjing, China
| | - Ruomeng Qin
- The State Key Laboratory of Pharmaceutical Biotechnology, Department of Neurology, Affiliated Drum Tower Hospital of Medical School, Institute of Brain Science, Nanjing University, Nanjing, China.,Jiangsu Key Laboratory for Molecular Medicine, Medical School of Nanjing University, Nanjing, China.,Jiangsu Province Stroke Center for Diagnosis and Therapy, Nanjing, China.,Nanjing Neuropsychiatry Clinic Medical Center, Nanjing, China
| | - Haifeng Chen
- The State Key Laboratory of Pharmaceutical Biotechnology, Department of Neurology, Affiliated Drum Tower Hospital of Medical School, Institute of Brain Science, Nanjing University, Nanjing, China.,Jiangsu Key Laboratory for Molecular Medicine, Medical School of Nanjing University, Nanjing, China.,Jiangsu Province Stroke Center for Diagnosis and Therapy, Nanjing, China.,Nanjing Neuropsychiatry Clinic Medical Center, Nanjing, China
| | - Lili Huang
- The State Key Laboratory of Pharmaceutical Biotechnology, Department of Neurology, Affiliated Drum Tower Hospital of Medical School, Institute of Brain Science, Nanjing University, Nanjing, China.,Jiangsu Key Laboratory for Molecular Medicine, Medical School of Nanjing University, Nanjing, China.,Jiangsu Province Stroke Center for Diagnosis and Therapy, Nanjing, China.,Nanjing Neuropsychiatry Clinic Medical Center, Nanjing, China
| | - Dan Yang
- The State Key Laboratory of Pharmaceutical Biotechnology, Department of Neurology, Affiliated Drum Tower Hospital of Medical School, Institute of Brain Science, Nanjing University, Nanjing, China.,Jiangsu Key Laboratory for Molecular Medicine, Medical School of Nanjing University, Nanjing, China.,Jiangsu Province Stroke Center for Diagnosis and Therapy, Nanjing, China.,Nanjing Neuropsychiatry Clinic Medical Center, Nanjing, China
| | - Qing Ye
- The State Key Laboratory of Pharmaceutical Biotechnology, Department of Neurology, Affiliated Drum Tower Hospital of Medical School, Institute of Brain Science, Nanjing University, Nanjing, China.,Jiangsu Key Laboratory for Molecular Medicine, Medical School of Nanjing University, Nanjing, China.,Jiangsu Province Stroke Center for Diagnosis and Therapy, Nanjing, China.,Nanjing Neuropsychiatry Clinic Medical Center, Nanjing, China
| | - Renyuan Liu
- The State Key Laboratory of Pharmaceutical Biotechnology, Department of Neurology, Affiliated Drum Tower Hospital of Medical School, Institute of Brain Science, Nanjing University, Nanjing, China.,Jiangsu Key Laboratory for Molecular Medicine, Medical School of Nanjing University, Nanjing, China.,Jiangsu Province Stroke Center for Diagnosis and Therapy, Nanjing, China.,Nanjing Neuropsychiatry Clinic Medical Center, Nanjing, China
| | - Yun Xu
- The State Key Laboratory of Pharmaceutical Biotechnology, Department of Neurology, Affiliated Drum Tower Hospital of Medical School, Institute of Brain Science, Nanjing University, Nanjing, China.,Jiangsu Key Laboratory for Molecular Medicine, Medical School of Nanjing University, Nanjing, China.,Jiangsu Province Stroke Center for Diagnosis and Therapy, Nanjing, China.,Nanjing Neuropsychiatry Clinic Medical Center, Nanjing, China
| | - Hui Zhao
- The State Key Laboratory of Pharmaceutical Biotechnology, Department of Neurology, Affiliated Drum Tower Hospital of Medical School, Institute of Brain Science, Nanjing University, Nanjing, China.,Jiangsu Key Laboratory for Molecular Medicine, Medical School of Nanjing University, Nanjing, China.,Jiangsu Province Stroke Center for Diagnosis and Therapy, Nanjing, China.,Nanjing Neuropsychiatry Clinic Medical Center, Nanjing, China
| | - Feng Bai
- The State Key Laboratory of Pharmaceutical Biotechnology, Department of Neurology, Affiliated Drum Tower Hospital of Medical School, Institute of Brain Science, Nanjing University, Nanjing, China.,Jiangsu Key Laboratory for Molecular Medicine, Medical School of Nanjing University, Nanjing, China.,Jiangsu Province Stroke Center for Diagnosis and Therapy, Nanjing, China.,Nanjing Neuropsychiatry Clinic Medical Center, Nanjing, China
| |
Collapse
|
49
|
Azcona E, Besson P, Wu Y, Punjabi A, Martersteck A, Dravid A, Parrish TB, Bandt SK, Katsaggelos AK. Interpretation of Brain Morphology in Association to Alzheimer's Disease Dementia Classification Using Graph Convolutional Networks on Triangulated Meshes. SHAPE IN MEDICAL IMAGING : INTERNATIONAL WORKSHOP, SHAPEMI 2020, HELD IN CONJUNCTION WITH MICCAI 2020, LIMA, PERU, OCTOBER 4, 2020, PROCEEDINGS 2020; 12474:95-107. [PMID: 33283214 PMCID: PMC7713521 DOI: 10.1007/978-3-030-61056-2_8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
We propose a mesh-based technique to aid in the classification of Alzheimer's disease dementia (ADD) using mesh representations of the cortex and subcortical structures. Deep learning methods for classification tasks that utilize structural neuroimaging often require extensive learning parameters to optimize. Frequently, these approaches for automated medical diagnosis also lack visual interpretability for areas in the brain involved in making a diagnosis. This work: (a) analyzes brain shape using surface information of the cortex and subcortical structures, (b) proposes a residual learning framework for state-of-the-art graph convolutional networks which offer a significant reduction in learnable parameters, and (c) offers visual interpretability of the network via class-specific gradient information that localizes important regions of interest in our inputs. With our proposed method leveraging the use of cortical and subcortical surface information, we outperform other machine learning methods with a 96.35% testing accuracy for the ADD vs. healthy control problem. We confirm the validity of our model by observing its performance in a 25-trial Monte Carlo cross-validation. The generated visualization maps in our study show correspondences with current knowledge regarding the structural localization of pathological changes in the brain associated to dementia of the Alzheimer's type.
Collapse
Affiliation(s)
- Emanuel Azcona
- Image and Video Processing Laboratory, Department of Electrical and Computer Engineering, Northwestern University, IL, USA
- Augmented Intelligence in Medical Imaging, Northwestern University, IL, USA
| | - Pierre Besson
- Advanced NeuroImaging and Surgical Epilepsy (ANISE) Lab, Northwestern Memorial Hospital, IL, USA
- Augmented Intelligence in Medical Imaging, Northwestern University, IL, USA
| | - Yunan Wu
- Image and Video Processing Laboratory, Department of Electrical and Computer Engineering, Northwestern University, IL, USA
- Augmented Intelligence in Medical Imaging, Northwestern University, IL, USA
| | - Arjun Punjabi
- Image and Video Processing Laboratory, Department of Electrical and Computer Engineering, Northwestern University, IL, USA
- Augmented Intelligence in Medical Imaging, Northwestern University, IL, USA
| | - Adam Martersteck
- Neuroimaging Laboratory, Department of Radiology, Northwestern University, IL, USA
- Augmented Intelligence in Medical Imaging, Northwestern University, IL, USA
| | - Amil Dravid
- Image and Video Processing Laboratory, Department of Electrical and Computer Engineering, Northwestern University, IL, USA
- Augmented Intelligence in Medical Imaging, Northwestern University, IL, USA
| | - Todd B Parrish
- Neuroimaging Laboratory, Department of Radiology, Northwestern University, IL, USA
- Augmented Intelligence in Medical Imaging, Northwestern University, IL, USA
| | - S Kathleen Bandt
- Advanced NeuroImaging and Surgical Epilepsy (ANISE) Lab, Northwestern Memorial Hospital, IL, USA
- Augmented Intelligence in Medical Imaging, Northwestern University, IL, USA
| | - Aggelos K Katsaggelos
- Image and Video Processing Laboratory, Department of Electrical and Computer Engineering, Northwestern University, IL, USA
- Augmented Intelligence in Medical Imaging, Northwestern University, IL, USA
| |
Collapse
|
50
|
Pattern analysis of glucose metabolic brain data for lateralization of MRI-negative temporal lobe epilepsy. Epilepsy Res 2020; 167:106474. [PMID: 32992074 DOI: 10.1016/j.eplepsyres.2020.106474] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Revised: 08/25/2020] [Accepted: 09/17/2020] [Indexed: 11/23/2022]
Abstract
In this paper, we assessed the reliability of glucose metabolic brain data for identifying lateralization of magnetic resonance imaging (MRI)-negative temporal lobe epilepsy (TLE) patients. We designed and developed an efficacious and automatic metabolic-wise lateralization framework. The proposed lateralization framework comprises three main systematic levels. In the first stage of our investigation, we pre-processed interictal fluorodeoxyglucose positron emission tomography images to extract glucose metabolic brain data. In the second stage, we used a voxel selection method involving a feature-ranking strategy to select the most discriminative metabolic voxels. Finally, we used a support vector machine followed by a 10-fold cross-validation strategy to assess the proposed lateralization framework in 27 patients with right MRI-negative TLE and 29 patients with left MRI-negative TLE. The proposed lateralization framework achieved an excellent accuracy of 96.43 % concordance with experienced PET interpreter. Thus, we show that pattern analysis of glucose metabolic brain data can accurately lateralize MRI-negative TLE patients in the clinical setting.
Collapse
|