Conformational equilibria and photoinduced tautomerization in 2-(2′-pyridyl)pyrrole

Nuclear Quantum Effects in Proton or Hydrogen Transfer

Proton or hydrogen transfers, basic chemical reactions, proceed either by thermally activated barrier crossing or via tunneling. Studies of molecules undergoing single or double proton or hydrogen transfer in the ground or excited electronic state reveal that tunneling can dominate under conditions usually considered to favor the thermal process. Moreover, the tunneling probability strongly varies for excitation of certain vibrational modes, which changes the effective barrier and/or proton transfer distance. When the reaction is fast compared to vibrational relaxation, the mode selectivity can still be maintained for molecules in solutions at 293 K. These observations point to dangers of relating the calculated minimum energy paths and the associated barriers to the experimentally obtained activation energies. The multidimensional character of the reaction coordinate is obvious; it can dramatically change for slowly and rapidly relaxing environments. We postulate that the hydrogen bond definition should be extended by specifically including the role of molecular vibrations.

ESIPT in the pyrrol pyridine molecule: mechanism, timescale and yield revealed using dynamics simulations

Excited State Intramolecular Proton Transfer in pyrrol pyridine is theoretically investigated using non-adiabatic dynamics simulations. The photochemical process is completely characterised: the reaction time, the total yield and the accessibility of the conical intersection are evaluated. Finally, new mechanistic interpretation are extracted: the proton transfer reaction in this molecule is shown to be driven by two complementary mechanisms.

Solvent effects on the photooxidation of indolepyrazines

Photodestruction of 2-(pyrazin-2'-yl)-1H-indole and 2,5-di(1H-indol-2'-yl)pyrazine involves singlet oxygen generation and its rapid insertion into the indole ring with the formation of benzoxazinone derivatives: 2-(pyrazin-2-yl)-4H-3,1-benzoxazin-4-one and 2-[5-(1H-indol-2-yl)pyrazin-2-yl]-4H-3,1-benzoxazin-4-one. The quantum yield of this reaction strongly depends on the environment. It is definitely smaller in protic methanol than in aprotic acetonitrile or n-hexane. The observed effect of photostabilization is explained by formation of hydrogen bonded complexes between the chromophore and alcohol, which results in lower triplet formation efficiency and, in consequence, decrease of singlet oxygen formation quantum yield.

Hydrogen-Bonded Cyclic Dimers at Large Compression: The Case of 1H-pyrrolo[3,2-h]quinoline and 2-(2'-pyridyl)pyrrole

1H-pyrrolo[3,2-h]qinoline (PQ) and 2-(2′-pyridyl)pyrrole (PP) are important systems in the study of proton-transfer reactions. These molecules possess hydrogen bond donor (pyrrole) and acceptor (pyridine) groups, which leads to the formation of cyclic dimers in their crystals. Herein, we present a joint experimental (Raman scattering) and computational (DFT modelling) study on the high-pressure behaviour of PQ and PP molecular crystals. Our results indicate that compression up to 10 GPa (100 kbar) leads to considerable strengthening of the intermolecular hydrogen bond within the cyclic dimers. However, the intramolecular N–H∙∙∙N interaction is either weakly affected by pressure, as witnessed in PQ, or weakened due to compression-induced distortions of the molecule, as was found for PP. Therefore, we propose that the compression of these systems should facilitate double proton transfer within the cyclic dimers of PQ and PP, while intramolecular transfer should either remain unaffected (for PQ) or weakened (for PP).

Proton diffusion dynamics along a diol as a proton-conducting wire in a photo-amphiprotic model system

We investigated the dynamics of excited-state proton transfer (ESPT) of photo-amphiprotic 7-hydroxyquinoline (7HQ) in the presence of a hydrogen (H)-bond bridging diol in a polar aprotic medium. The formation of 1 : 1 H-bonded complexes of 7HQ with various diols of different alkane chain lengths was revealed using steady-state electronic spectroscopy. With femtosecond-resolved fluorescence spectroscopy, cyclic H-bonded 1 : 1 complexes were found to undergo facile ESPT from the acidic enol to the basic imine group of 7HQ via the H-bond bridge. Through quantum chemical calculations, we found that the proton-transfer rate of the well-configured H-bonded complex correlated with the intramolecular H-bond length of a H-bond wiring diol molecule. Noncyclic, singly H-bonded 7HQ with a diol molecule was observed to undergo ESPT once another diol molecule diffuses to the noncyclic complex and accomplishes the formation of a reactive cyclic H-bonded 7HQ-(diol)₂ complex, which was evidenced by the observation that the overall proton-transfer rate constant decreases when a longer-chain diol was used as the bridging wire part. The kinetic isotope effect on the proton relay was investigated to confirm that the nature of the activation barrier for the proton diffusion along the wire is isotope-sensitive proton tunnelling, while for the non-cyclic configuration, the isotope-insensitive H-bond bridge formation is a prerequisite for ESPT.

Combined effect of hydrogen bonding interactions and freezing of rotameric equilibrium on the enhancement of photostability

Rigid structure and hydrogen-bonding interactions provide a higher photostability of organic chromophores.

Non-typical fluorescence studies of excited and ground state proton and hydrogen transfer

Fluorescence studies of tautomerization have been carried out for various systems that exhibit single and double proton or hydrogen translocation in various environments, such as liquid and solid condensed phases, ultracold supersonic jets, and finally, polymer matrices with single emitters. We focus on less explored areas of application of fluorescence for tautomerization studies, using porphycene, a porphyrin isomer, as an example. Fluorescence anisotropy techniques allow investigations of self-exchange reactions, where the reactant and product are formally identical. Excitation with polarized light makes it possible to monitor tautomerization in single molecules and to detect their three-dimensional orientation. Analysis of fluorescence from single vibronic levels of jet-isolated porphycene not only demonstrates coherent tunneling of two internal protons, but also indicates that the process is vibrational mode-specific. Next, we present bifunctional proton donor-acceptor systems, molecules that are able, depending on the environment, to undergo excited state single intramolecular or double intermolecular proton transfer. For molecules that have donor and acceptor groups located in separate moieties linked by a single bond, excited state tautomerization can be coupled to mutual twisting of the two subunits.

Less stable tautomers form stronger hydrogen bonds: the case of water complexes

Hydrogen bonding in cyclic complexes of water with tautomeric pairs of molecules M⁰ and M¹ is calculated to be stronger by more than 25% for the less stable tautomer M¹ in all cases where the energy gap between the two tautomers is large (ΔE(M⁰ − M¹) > 10 kcal mol⁻¹).

Non-classical effects in proton or hydrogen transfer

Results of thorough investigations of tautomerism in the ground and excited electronic states performed for various organic molecules under different regimes: condensed phases, isolated and single molecules, with a special emphasis on porphycene, a porphyrin isomer, demonstrate that, in order to precisely describe the proton/hydrogen transfer path, one has to explicitly consider tunneling. Tautomerization is a multidimensional process, controlled by excitation of specific vibrational modes. Vibrational excitation can both enhance or hinder the reaction. The role of specific vibrational modes can now be assessed, even at the level of single molecules.

New insights into the solvent-assisted excited-state double proton transfer of 2-(1H-pyrazol-5-yl)pyridine with alcoholic partners: a TDDFT investigation

Excited-state double proton transfer (ESDPT) in the hydrogen-bonded 2-(1H-pyrazol-5-yl)pyridine with propyl alcoholic partner (PPP) was theoretically investigated by time-dependent density functional theory (TDDFT) method. Great changes have taken place for the calculated geometric structures, the electron density features and vibrational spectrum of PPP system in S0 and S1 state. Our results have demonstrated that ESDPT reaction happens within the system upon photoexcitation. We also found that the ESDPT process is facilitated by the electronically excited state intermolecular hydrogen bond strengthening. Particularly, after the photoexcitation from HOMO(π) to the LUMO(π(∗)), the rearrangement of electronic density distribution of frontier molecular orbitals (MOs) on pyridine and the pyrazol moieties exhibits a very important positive factor for the ESDPT. Furthermore, by the investigation of the stretching vibrations of NH and OH groups, the infrared (IR) spectroscopic results provide us not only a theoretical evidence of ESDPT, but also a considerable clue to characterize the nature of intermolecular reaction. In addition, efforts have also been devoted towards calculating the absorption peak, which shows good consistency with the experimental result of the studied system.

Three modes of proton transfer in one chromophore: photoinduced tautomerization in 2-(1H-pyrazol-5-yl)pyridines, their dimers and alcohol complexes

Studies of 2-(1H-pyrazol-5-yl)pyridine (PPP) and its derivatives 2-(4-methyl-1H-pyrazol-5-yl)pyridine (MPP) and 2-(3-bromo-1H-pyrazol-5-yl)pyridine (BPP) by stationary and time-resolved UV/Vis spectroscopic methods, and quantum chemical computations show that this class of compounds provides a rare example of molecules that exhibit three types of photoreactions: 1) excited-state intramolecular proton transfer (ESIPT) in the syn form of MPP, 2) excited-state intermolecular double-proton transfer (ESDPT) in the dimers of PPP in nonpolar media, as well as 3) solvent-assisted double-proton transfer in hydrogen-bonded 1:1 complexes of PPP and MPP with alcoholic partners. The excited-state processes are manifested by the appearance of a dual luminescence and a bimodal irreversible kinetic coupling of the two fluorescence bands. Ground-state syn-anti equilibria are detected and discussed. The fraction of the higher-energy anti form varies for different derivatives and is strongly dependent on the solvent polarity and hydrogen-bond donor or acceptor abilities.

Partitioning of 2,6-Bis(1H-Benzimidazol-2-yl)pyridine fluorophore into a phospholipid bilayer: complementary use of fluorescence quenching studies and molecular dynamics simulations

Successful use of fluorescence sensing in elucidating the biophysical properties of lipid membranes requires knowledge of the distribution and location of an emitting molecule in the bilayer. We report here that 2,6-bis(1H-benzimidazol-2-yl)pyridine (BBP), which is almost non-fluorescent in aqueous solutions, reveals a strong emission enhancement in a hydrophobic environment of a phospholipid bilayer, making it interesting for fluorescence probing of water content in a lipid membrane. Comparing the fluorescence behavior of BBP in a wide variety of solvents with those in phospholipid vesicles, we suggest that the hydrogen bonding interactions between a BBP fluorophore and water molecules play a crucial role in the observed "light switch effect". Therefore, the loss of water-induced fluorescence quenching inside a membrane are thought to be due to deep penetration of BBP into the hydrophobic, water-free region of a bilayer. Characterized by strong quenching by transition metal ions in solution, BBP also demonstrated significant shielding from the action of the quencher in the presence of phospholipid vesicles. We used the increase in fluorescence intensity, measured upon titration of probe molecules with lipid vesicles, to estimate the partition constant and the Gibbs free energy (ΔG) of transfer of BBP from aqueous buffer into a membrane. Partitioning BBP revealed strongly favorable ΔG, which depends only slightly on the lipid composition of a bilayer, varying in a range from -6.5 to -7.0kcal/mol. To elucidate the binding interactions of the probe with a membrane on the molecular level, a distribution and favorable location of BBP in a POPC bilayer were modeled via atomistic molecular dynamics (MD) simulations using two different approaches: (i) free, diffusion-driven partitioning of the probe molecules into a bilayer and (ii) constrained umbrella sampling of a penetration profile of the dye molecule across a bilayer. Both of these MD approaches agreed with regard to the preferred location of a BBP fluorophore within the interfacial region of a bilayer, located between the hydrocarbon acyl tails and the initial portion of the lipid headgroups. MD simulations also revealed restricted permeability of water molecules into this region of a POPC bilayer, determining the strong fluorescence enhancement observed experimentally for the membrane-partitioned form of BBP.

Theoretical study of the structures and hydrogen-bond properties of new alternated heterocyclic compounds

The conformational preferences of a new bis-pyrrole derivative and its bis-pyridazine precursor have been investigated through quantum chemistry calculations (HF, DFT(MPWB1K), LMP2) and observations in the solid state. The global energetic minima are planar for both structures, with the conformational preferences being explained by pi-electronic conjugation between the aromatic systems and the occurrence of intramolecular hydrogen bonds (HB). For the bis-pyridazine derivative, the all-anti preferred conformation results from CH...Nsp(2) HB whereas the all-syn conformation of the bis-pyrrole is partly due to NH...Nsp(2) HB. For both systems, the validity of the theoretical conformational features is confirmed through the excellent agreement with the experimental data available. Calculations of electrostatic potential computed on the molecular surface of the various structures and their building blocks allow the variations to be rationalized in terms of molecular structure and are used to analyze the HB donor and acceptor sites of the compounds. The HB interaction sites predicted from the quantum chemical calculations are confirmed through the HB interactions observed in relevant crystal structures.

Photochemical deuterium exchange in phenyl-substituted pyrroles and indoles in CD3CN-D2O

A new mechanism of photochemical deuteration of some phenylpyrroles and indoles is reported. Irradiation of 2-phenylpyrrole (8), 2-phenylindole (9), and 7-phenylindole (12) in CH(3)CN-D(2)O gives rise to deuterium exchange at the C-atoms of the heterocycle and the adjacent phenyl ring. Photolysis of indole (7), 8, 9, 12 and N-methyl-2-phenylindole (10) in CD(3)CN-D(2)O also leads to deuteration at C-atoms with significantly higher yield. The mechanism most probably involves ejection of an electron on excitation and formation of radical cations that abstract D-atoms from CD(3)CN or undergo bimolecular D-abstraction (photolysis in CH(3)CN-D(2)O). The other possible mechanism of deuterium exchange for 7, 8, 9 and 12 may take place via a homolytic N-D cleavage and recombination of the radical pair. Radical cations of 8, 9 and 10 were detected by laser flash photolysis. Steady state and time-resolved fluorescence of 8, 9, 10 and 12 showed that photoinduced intramolecular electron transfer probably does not occur. The fluorescence was quenched by acid and base and the rate constants determined by Stern-Volmer analyses. The estimated pK(a) values for the protonation and deprotonation of the singlet excited states indicated that in neutral aqueous solutions ESPT probably does not take place, additionally corroborating the radical or radical cationic mechanism of deuteration.