1
|
Chen Q, Zheng X, Shi H, Zhou Q, Hu H, Sun M, Xu Y, Zhang X. Prediction of influenza outbreaks in Fuzhou, China: comparative analysis of forecasting models. BMC Public Health 2024; 24:1399. [PMID: 38796443 PMCID: PMC11127308 DOI: 10.1186/s12889-024-18583-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2023] [Accepted: 04/12/2024] [Indexed: 05/28/2024] Open
Abstract
BACKGROUND Influenza is a highly contagious respiratory disease that presents a significant challenge to public health globally. Therefore, effective influenza prediction and prevention are crucial for the timely allocation of resources, the development of vaccine strategies, and the implementation of targeted public health interventions. METHOD In this study, we utilized historical influenza case data from January 2013 to December 2021 in Fuzhou to develop four regression prediction models: SARIMA, Prophet, Holt-Winters, and XGBoost models. Their predicted performance was assessed by using influenza data from the period from January 2022 to December 2022 in Fuzhou. These models were used for fitting and prediction analysis. The evaluation metrics, including Mean Squared Error (MSE), Root Mean Squared Error (RMSE), and Mean Absolute Error (MAE), were employed to compare the performance of these models. RESULTS The results indicate that the epidemic of influenza in Fuzhou exhibits a distinct seasonal and cyclical pattern. The influenza cases data displayed a noticeable upward trend and significant fluctuations. In our study, we employed SARIMA, Prophet, Holt-Winters, and XGBoost models to predict influenza outbreaks in Fuzhou. Among these models, the XGBoost model demonstrated the best performance on both the training and test sets, yielding the lowest values for MSE, RMSE, and MAE among the four models. CONCLUSION The utilization of the XGBoost model significantly enhances the prediction accuracy of influenza in Fuzhou. This study makes a valuable contribution to the field of influenza prediction and provides substantial support for future influenza response efforts.
Collapse
Affiliation(s)
- Qingquan Chen
- The Affiliated Fuzhou Center for Disease Control and Prevention of Fujian Medical University, Fuzhou, 350005, China
- The School of Public Health, Fujian Medical University, Fuzhou, 350108, China
| | - Xiaoyan Zheng
- The Affiliated Fuzhou Center for Disease Control and Prevention of Fujian Medical University, Fuzhou, 350005, China
- The School of Public Health, Fujian Medical University, Fuzhou, 350108, China
| | - Huanhuan Shi
- The Affiliated Fuzhou Center for Disease Control and Prevention of Fujian Medical University, Fuzhou, 350005, China
- The School of Public Health, Fujian Medical University, Fuzhou, 350108, China
| | - Quan Zhou
- The Affiliated Fuzhou Center for Disease Control and Prevention of Fujian Medical University, Fuzhou, 350005, China
- The School of Public Health, Fujian Medical University, Fuzhou, 350108, China
| | - Haiping Hu
- The Affiliated Fuzhou Center for Disease Control and Prevention of Fujian Medical University, Fuzhou, 350005, China
- The School of Public Health, Fujian Medical University, Fuzhou, 350108, China
| | - Mengcai Sun
- The Affiliated Fuzhou Center for Disease Control and Prevention of Fujian Medical University, Fuzhou, 350005, China
- The School of Public Health, Fujian Medical University, Fuzhou, 350108, China
| | - Youqiong Xu
- The Affiliated Fuzhou Center for Disease Control and Prevention of Fujian Medical University, Fuzhou, 350005, China.
- The School of Public Health, Fujian Medical University, Fuzhou, 350108, China.
| | - Xiaoyang Zhang
- The Affiliated Fuzhou Center for Disease Control and Prevention of Fujian Medical University, Fuzhou, 350005, China.
- The School of Public Health, Fujian Medical University, Fuzhou, 350108, China.
| |
Collapse
|
2
|
Chen H, Xiao M. Seasonality of influenza-like illness and short-term forecasting model in Chongqing from 2010 to 2022. BMC Infect Dis 2024; 24:432. [PMID: 38654199 PMCID: PMC11036656 DOI: 10.1186/s12879-024-09301-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Accepted: 04/07/2024] [Indexed: 04/25/2024] Open
Abstract
BACKGROUND Influenza-like illness (ILI) imposes a significant burden on patients, employers and society. However, there is no analysis and prediction at the hospital level in Chongqing. We aimed to characterize the seasonality of ILI, examine age heterogeneity in visits, and predict ILI peaks and assess whether they affect hospital operations. METHODS The multiplicative decomposition model was employed to decompose the trend and seasonality of ILI, and the Seasonal Auto-Regressive Integrated Moving Average with exogenous factors (SARIMAX) model was used for the trend and short-term prediction of ILI. We used Grid Search and Akaike information criterion (AIC) to calibrate and verify the optimal hyperparameters, and verified the residuals of the multiplicative decomposition and SARIMAX model, which are both white noise. RESULTS During the 12-year study period, ILI showed a continuous upward trend, peaking in winter (Dec. - Jan.) and a small spike in May-June in the 2-4-year-old high-risk group for severe disease. The mean length of stay (LOS) in ILI peaked around summer (about Aug.), and the LOS in the 0-1 and ≥ 65 years old severely high-risk group was more irregular than the others. We found some anomalies in the predictive analysis of the test set, which were basically consistent with the dynamic zero-COVID policy at the time. CONCLUSION The ILI patient visits showed a clear cyclical and seasonal pattern. ILI prevention and control activities can be conducted seasonally on an annual basis, and age heterogeneity should be considered in the health resource planning. Targeted immunization policies are essential to mitigate potential pandemic threats. The SARIMAX model has good short-term forecasting ability and accuracy. It can help explore the epidemiological characteristics of ILI and provide an early warning and decision-making basis for the allocation of medical resources related to ILI visits.
Collapse
Affiliation(s)
- Huayong Chen
- School of Public Health, Research Center for Medical and Social Development, Chongqing Medical University, 1 Yixueyuan Road, Yuzhong District, 400016, Chongqing, P. R. China
| | - Mimi Xiao
- School of Public Health, Research Center for Medical and Social Development, Chongqing Medical University, 1 Yixueyuan Road, Yuzhong District, 400016, Chongqing, P. R. China.
| |
Collapse
|
3
|
Hongliang G, Zhiyao Z, Ahmadianfar I, Escorcia-Gutierrez J, Aljehane NO, Li C. Multi-step influenza forecasting through singular value decomposition and kernel ridge regression with MARCOS-guided gradient-based optimization. Comput Biol Med 2024; 169:107888. [PMID: 38157778 DOI: 10.1016/j.compbiomed.2023.107888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 11/28/2023] [Accepted: 12/18/2023] [Indexed: 01/03/2024]
Abstract
This research delves into the significance of influenza outbreaks in public health, particularly the importance of accurate forecasts using weekly Influenza-like illness (ILI) rates. The present work develops a novel hybrid machine-learning model by combining singular value decomposition with kernel ridge regression (SKRR). In this context, a novel hybrid model known as H-SKRR is developed by combining two robust forecasting approaches, SKRR and ridge regression, which aims to improve multi-step-ahead predictions for weekly ILI rates in Southern and Northern China. The study begins with feature selection via XGBoost in the preprocessing phase, identifying optimal precursor information guided by importance factors. It decomposes the original signal using multivariate variational mode decomposition (MVMD) to address non-stationarity and complexity. H-SKRR is implemented by incorporating significant lagged-time components across sub-components. The aggregated forecasted values from these sub-components generate ILI values for two horizons (i.e., 4-and 7-weekly ahead). Employing the gradient-based optimization (GBO) algorithm fine-tunes model parameters. Furthermore, the deep random vector functional link (dRVFL), Ridge regression, and gated recurrent unit neural network (GRU) models were employed to validate the MVMD-H-SKRR-GBO paradigm's effectiveness. The outcomes, assessed using the MARCOS (Measurement of alternatives and ranking according to compromise solution) method as a multi-criteria decision-making method, highlight the superior accuracy of the MVMD-H-SKRR-GBO model in predicting ILI rates. The results clearly highlight the exceptional performance of the MVMD-H-SKRR-GBO model, with outstanding precision demonstrated by impressive R, RMSE, IA, and U95 % values of 0.946, 0.388, 0.970, and 1.075, respectively, at t + 7.
Collapse
Affiliation(s)
- Guo Hongliang
- College of Information Technology, Jilin Agricultural University, Changchun, 130118, China.
| | - Zhang Zhiyao
- College of Information Technology, Jilin Agricultural University, Changchun, 130118, China.
| | - Iman Ahmadianfar
- Information and Communication Technology Research Group, Scientific Research Center, Al-Ayen University, Thi-Qar, Nasiriyah, 64001, Iraq.
| | - José Escorcia-Gutierrez
- Department of Computational Science and Electronics, Universidad de La Costa, CUC, Barranquilla, 080002, Colombia.
| | - Nojood O Aljehane
- Faculty of Computers and Information Technology, University of Tabuk, Tabuk, Saudi Arabia, Tabuk University, KSA.
| | - Chengye Li
- Department of Pulmonary and Critical Care Medicine, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, 325000, China.
| |
Collapse
|
4
|
Yang L, Zhang T, Han X, Yang J, Sun Y, Ma L, Chen J, Li Y, Lai S, Li W, Feng L, Yang W. Influenza Epidemic Trend Surveillance and Prediction Based on Search Engine Data: Deep Learning Model Study. J Med Internet Res 2023; 25:e45085. [PMID: 37847532 PMCID: PMC10618884 DOI: 10.2196/45085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 07/24/2023] [Accepted: 08/04/2023] [Indexed: 10/18/2023] Open
Abstract
BACKGROUND Influenza outbreaks pose a significant threat to global public health. Traditional surveillance systems and simple algorithms often struggle to predict influenza outbreaks in an accurate and timely manner. Big data and modern technology have offered new modalities for disease surveillance and prediction. Influenza-like illness can serve as a valuable surveillance tool for emerging respiratory infectious diseases like influenza and COVID-19, especially when reported case data may not fully reflect the actual epidemic curve. OBJECTIVE This study aimed to develop a predictive model for influenza outbreaks by combining Baidu search query data with traditional virological surveillance data. The goal was to improve early detection and preparedness for influenza outbreaks in both northern and southern China, providing evidence for supplementing modern intelligence epidemic surveillance methods. METHODS We collected virological data from the National Influenza Surveillance Network and Baidu search query data from January 2011 to July 2018, totaling 3,691,865 and 1,563,361 respective samples. Relevant search terms related to influenza were identified and analyzed for their correlation with influenza-positive rates using Pearson correlation analysis. A distributed lag nonlinear model was used to assess the lag correlation of the search terms with influenza activity. Subsequently, a predictive model based on the gated recurrent unit and multiple attention mechanisms was developed to forecast the influenza-positive trend. RESULTS This study revealed a high correlation between specific Baidu search terms and influenza-positive rates in both northern and southern China, except for 1 term. The search terms were categorized into 4 groups: essential facts on influenza, influenza symptoms, influenza treatment and medicine, and influenza prevention, all of which showed correlation with the influenza-positive rate. The influenza prevention and influenza symptom groups had a lag correlation of 1.4-3.2 and 5.0-8.0 days, respectively. The Baidu search terms could help predict the influenza-positive rate 14-22 days in advance in southern China but interfered with influenza surveillance in northern China. CONCLUSIONS Complementing traditional disease surveillance systems with information from web-based data sources can aid in detecting warning signs of influenza outbreaks earlier. However, supplementation of modern surveillance with search engine information should be approached cautiously. This approach provides valuable insights for digital epidemiology and has the potential for broader application in respiratory infectious disease surveillance. Further research should explore the optimization and customization of search terms for different regions and languages to improve the accuracy of influenza prediction models.
Collapse
Affiliation(s)
- Liuyang Yang
- Department of Management Science and Information System, Faculty of Management and Economics, Kunming University of Science and Technology, Kunming, China
- School of Population Medicine and Public Health, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Ting Zhang
- School of Population Medicine and Public Health, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Xuan Han
- School of Population Medicine and Public Health, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Jiao Yang
- School of Population Medicine and Public Health, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Yanxia Sun
- School of Population Medicine and Public Health, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Libing Ma
- School of Population Medicine and Public Health, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
- Department of Respiratory and Critical Care Medicine, Affiliated Hospital of Guilin Medical University, Guilin, China
| | - Jialong Chen
- Department of Respiratory and Critical Care Medicine, Bejing Hospital, Beijing, China
| | - Yanming Li
- Department of Respiratory and Critical Care Medicine, Bejing Hospital, Beijing, China
| | - Shengjie Lai
- WorldPop, School of Geography and Environmental Science, University of Southampton, Southampton, United Kingdom
| | - Wei Li
- The First People's Hospital of Yunnan Province, Affiliated Hospital of Kunming University of Science and Technology, Kunming, China
| | - Luzhao Feng
- School of Population Medicine and Public Health, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Weizhong Yang
- School of Population Medicine and Public Health, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| |
Collapse
|
5
|
Morbey RA, Todkill D, Watson C, Elliot AJ. Machine learning forecasts for seasonal epidemic peaks: Lessons learnt from an atypical respiratory syncytial virus season. PLoS One 2023; 18:e0291932. [PMID: 37738241 PMCID: PMC10516409 DOI: 10.1371/journal.pone.0291932] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Accepted: 09/10/2023] [Indexed: 09/24/2023] Open
Abstract
Seasonal peaks in infectious disease incidence put pressures on health services. Therefore, early warning of the timing and magnitude of peak activity during seasonal epidemics can provide information for public health practitioners to take appropriate action. Whilst many infectious diseases have predictable seasonality, newly emerging diseases and the impact of public health interventions can result in unprecedented seasonal activity. We propose a Machine Learning process for generating short-term forecasts, where models are selected based on their ability to correctly forecast peaks in activity, and can be useful during atypical seasons. We have validated our forecasts using typical and atypical seasonal activity, using respiratory syncytial virus (RSV) activity during 2019-2021 as an example. During the winter of 2020/21 the usual winter peak in RSV activity in England did not occur but was 'deferred' until the Spring of 2021. We compare a range of Machine Learning regression models, with alternate models including different independent variables, e.g. with or without seasonality or trend variables. We show that the best-fitting model which minimises daily forecast errors is not the best model for forecasting peaks when the selection criterion is based on peak timing and magnitude. Furthermore, we show that best-fitting models for typical seasons contain different variables to those for atypical seasons. Specifically, including seasonality in models improves performance during typical seasons but worsens it for the atypical seasons.
Collapse
Affiliation(s)
- Roger A. Morbey
- Real-Time Syndromic Surveillance Team, Field Services, Health Protection Operations, UK Health Security Agency, Birmingham, United Kingdom
| | - Daniel Todkill
- Real-Time Syndromic Surveillance Team, Field Services, Health Protection Operations, UK Health Security Agency, Birmingham, United Kingdom
| | - Conall Watson
- Immunisation and Vaccine Preventable Diseases Division, UK Health Security Agency, London, United Kingdom
| | - Alex J. Elliot
- Real-Time Syndromic Surveillance Team, Field Services, Health Protection Operations, UK Health Security Agency, Birmingham, United Kingdom
| |
Collapse
|
6
|
Jang B, Kim I, Kim JW. Long-Term Influenza Outbreak Forecast Using Time-Precedence Correlation of Web Data. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2023; 34:2400-2412. [PMID: 34469319 DOI: 10.1109/tnnls.2021.3106637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Influenza leads to many deaths every year and is a threat to human health. For effective prevention, traditional national-scale statistical surveillance systems have been developed, and numerous studies have been conducted to predict influenza outbreaks using web data. Most studies have captured the short-term signs of influenza outbreaks, such as one-week prediction using the characteristics of web data uploaded in real time; however, long-term predictions of more than 2-10 weeks are required to effectively cope with influenza outbreaks. In this study, we determined that web data uploaded in real time have a time-precedence relationship with influenza outbreaks. For example, a few weeks before an influenza pandemic, the word "colds" appears frequently in web data. The web data after the appearance of the word "colds" can be used as information for forecasting future influenza outbreaks, which can improve long-term influenza prediction accuracy. In this study, we propose a novel long-term influenza outbreak forecast model utilizing the time precedence between the emergence of web data and an influenza outbreak. Based on the proposed model, we conducted experiments on: 1) selecting suitable web data for long-term influenza prediction; 2) determining whether the proposed model is regionally dependent; and 3) evaluating the accuracy according to the prediction timeframe. The proposed model showed a correlation of 0.87 in the long-term prediction of ten weeks while significantly outperforming other state-of-the-art methods.
Collapse
|
7
|
Mavragani A, Fragkozidis G, Zarkogianni K, Nikita KS. Long Short-term Memory-Based Prediction of the Spread of Influenza-Like Illness Leveraging Surveillance, Weather, and Twitter Data: Model Development and Validation. J Med Internet Res 2023; 25:e42519. [PMID: 36745490 PMCID: PMC9941907 DOI: 10.2196/42519] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Revised: 11/29/2022] [Accepted: 11/30/2022] [Indexed: 12/05/2022] Open
Abstract
BACKGROUND The potential to harness the plurality of available data in real time along with advanced data analytics for the accurate prediction of influenza-like illness (ILI) outbreaks has gained significant scientific interest. Different methodologies based on the use of machine learning techniques and traditional and alternative data sources, such as ILI surveillance reports, weather reports, search engine queries, and social media, have been explored with the ultimate goal of being used in the development of electronic surveillance systems that could complement existing monitoring resources. OBJECTIVE The scope of this study was to investigate for the first time the combined use of ILI surveillance data, weather data, and Twitter data along with deep learning techniques toward the development of prediction models able to nowcast and forecast weekly ILI cases. By assessing the predictive power of both traditional and alternative data sources on the use case of ILI, this study aimed to provide a novel approach for corroborating evidence and enhancing accuracy and reliability in the surveillance of infectious diseases. METHODS The model's input space consisted of information related to weekly ILI surveillance, web-based social (eg, Twitter) behavior, and weather conditions. For the design and development of the model, relevant data corresponding to the period of 2010 to 2019 and focusing on the Greek population and weather were collected. Long short-term memory (LSTM) neural networks were leveraged to efficiently handle the sequential and nonlinear nature of the multitude of collected data. The 3 data categories were first used separately for training 3 LSTM-based primary models. Subsequently, different transfer learning (TL) approaches were explored with the aim of creating various feature spaces combining the features extracted from the corresponding primary models' LSTM layers for the latter to feed a dense layer. RESULTS The primary model that learned from weather data yielded better forecast accuracy (root mean square error [RMSE]=0.144; Pearson correlation coefficient [PCC]=0.801) than the model trained with ILI historical data (RMSE=0.159; PCC=0.794). The best performance was achieved by the TL-based model leveraging the combination of the 3 data categories (RMSE=0.128; PCC=0.822). CONCLUSIONS The superiority of the TL-based model, which considers Twitter data, weather data, and ILI surveillance data, reflects the potential of alternative public sources to enhance accurate and reliable prediction of ILI spread. Despite its focus on the use case of Greece, the proposed approach can be generalized to other locations, populations, and social media platforms to support the surveillance of infectious diseases with the ultimate goal of reinforcing preparedness for future epidemics.
Collapse
Affiliation(s)
| | - Georgios Fragkozidis
- School of Electrical and Computer Engineering, National Technical University of Athens, Zografos, Athens, Greece
| | - Konstantia Zarkogianni
- School of Electrical and Computer Engineering, National Technical University of Athens, Zografos, Athens, Greece
| | - Konstantina S Nikita
- School of Electrical and Computer Engineering, National Technical University of Athens, Zografos, Athens, Greece
| |
Collapse
|
8
|
Jiao Z, Ji H, Yan J, Qi X. Application of big data and artificial intelligence in epidemic surveillance and containment. INTELLIGENT MEDICINE 2023; 3:36-43. [PMID: 36373090 PMCID: PMC9636598 DOI: 10.1016/j.imed.2022.10.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Revised: 10/12/2022] [Accepted: 10/13/2022] [Indexed: 11/07/2022]
Abstract
Faced with the current time-sensitive COVID-19 pandemic, the overburdened healthcare systems have resulted in a strong demand to develop newer methods to control the spread of the pandemic. Big data and artificial intelligence (AI) have been leveraged amid the COVID-19 pandemic; however, little is known about their use for supporting public health efforts. In epidemic surveillance and containment, efforts are needed to treat critical patients, track and manage the health status of residents, isolate suspected cases, and develop vaccines and antiviral drugs. The applications of emerging practices of artificial intelligence and big data have become powerful "weapons" to fight against the pandemic and provide strong support in pandemic prevention and control, such as early warning, analysis and judgment, interruption and intervention of epidemic, to achieve goals of early detection, early report, early diagnosis, early isolation and early treatment. These are the decisive factors to control the spread of the epidemic and reduce the mortality. This paper systematically summarized the application of big data and AI in epidemic, and describes practical cases and challenges with emphasis on epidemic prevention and control. The included studies showed that big data and AI have the potential strength to fight against COVID-19. However, many of the proposed methods are not yet widely accepted. Thus, the most rewarding research would be on methods that promise value beyond COVID-19. More efforts are needed for developing standardized reporting protocols or guidelines for practice.
Collapse
Affiliation(s)
- Zengtao Jiao
- AI lab, Yidu Cloud (Beijing) Technology Co., Ltd., Beijing 100083, China
| | - Hanran Ji
- Center for Global Public Health, Chinese Center for Disease Control and Prevention, Beijing 102206, China
| | - Jun Yan
- AI lab, Yidu Cloud (Beijing) Technology Co., Ltd., Beijing 100083, China
| | - Xiaopeng Qi
- Center for Global Public Health, Chinese Center for Disease Control and Prevention, Beijing 102206, China
| |
Collapse
|
9
|
Dai S, Han L. Influenza surveillance with Baidu index and attention-based long short-term memory model. PLoS One 2023; 18:e0280834. [PMID: 36689543 PMCID: PMC9870163 DOI: 10.1371/journal.pone.0280834] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Accepted: 01/10/2023] [Indexed: 01/24/2023] Open
Abstract
BACKGROUND The prediction and prevention of influenza is a public health issue of great concern, and the study of timely acquisition of influenza transmission trend has become an important research topic. For achieving more quicker and accurate detection and prediction, the data recorded on the Internet, especially on the search engine from Google or Baidu are widely introduced into this field. Moreover, with the development of intelligent technology and machine learning algorithm, many updated and advanced trend tracking and forecasting methods are also being used in this research problem. METHODS In this paper, a new recurrent neural network architecture, attention-based long short-term memory model is proposed for influenza surveillance. This is a kind of deep learning model which is trained by processing from Baidu Index series so as to fit the real influenza survey time series. Previous studies on influenza surveillance by Baidu Index mostly used traditional autoregressive moving average model or classical machine learning models such as logarithmic linear regression, support vector regression or multi-layer perception model to fit influenza like illness data, which less considered the deep learning structure. Meanwhile, some new model that considered the deep learning structure did not take into account the application of Baidu index data. This study considers introducing the recurrent neural network with long short-term memory combined with attention mechanism into the influenza surveillance research model, which not only fits the research problems well in model structure, but also provides research methods based on Baidu index. RESULTS The actual survey data and Baidu Index data are used to train and test the proposed attention-based long short-term memory model and the other comparison models, so as to iterate the value of the model parameters, and to describe and predict the influenza epidemic situation. The experimental results show that our proposed model has better performance in the mean absolute error, mean absolute percentage error, index of agreement and other indicators than the other comparison models. CONCLUSION Our proposed attention-based long short-term memory model vividly verifies the ability of this attention-based long short-term memory structure for better surveillance and prediction the trend of influenza. In comparison with some of the latest models and methods in this research field, the model we proposed is also excellent in effect, even more lightweight and robust. Future research direction can consider fusing multimodal data based on this model and developing more application scenarios.
Collapse
Affiliation(s)
- Shangfang Dai
- School of Economics and Management, Tsinghua University, Beijing, China
| | - Litao Han
- School of Mathematics, Renmin University of China, Beijing, China
| |
Collapse
|
10
|
Dengue Risk Forecast with Mosquito Vector: A Multicomponent Fusion Approach Based on Spatiotemporal Analysis. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022; 2022:2515432. [PMID: 35693260 PMCID: PMC9184161 DOI: 10.1155/2022/2515432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 05/07/2022] [Accepted: 05/10/2022] [Indexed: 12/04/2022]
Abstract
Dengue as an acute infectious disease threatens global public health and has sparked broad research interest. However, existing studies generally ignore the spatial dependencies involved in dengue forecast, and consideration of temporal periodicity is absent. In this work, we propose a spatiotemporal component fusion model (STCFM) to solve the dengue risk forecast issue. Considering that mosquitoes are an important vector of dengue transmission, we introduce feature factors involving mosquito abundance and spatiotemporal lags to model temporal trends and spatial distributions separately on the basis of statistical properties. Specifically, we conduct multiscale modeling of temporal dependencies to enhance the forecast capability of relevant periods by capturing the historical variation patterns of the data across different segments in the temporal dimension. In the spatial dimension, we quantify the multivariate spatial correlation analysis as additional features to strengthen the spatial feature representation and adopt the ConvLSTM model to learn spatial dependencies adequately. The final forecast results are obtained by stacking strategy fusion in ensemble learning. We conduct experiments on real dengue datasets. The results indicate that STCFM improves prediction accuracy through effective spatiotemporal feature representations and outperforms candidate models with a reasonable component construction strategy.
Collapse
|
11
|
Albalawi U, Mustafa M. Current Artificial Intelligence (AI) Techniques, Challenges, and Approaches in Controlling and Fighting COVID-19: A Review. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:5901. [PMID: 35627437 PMCID: PMC9140632 DOI: 10.3390/ijerph19105901] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Revised: 05/07/2022] [Accepted: 05/09/2022] [Indexed: 11/17/2022]
Abstract
SARS-CoV-2 (COVID-19) has been one of the worst global health crises in the 21st century. The currently available rollout vaccines are not 100% effective for COVID-19 due to the evolving nature of the virus. There is a real need for a concerted effort to fight the virus, and research from diverse fields must contribute. Artificial intelligence-based approaches have proven to be significantly effective in every branch of our daily lives, including healthcare and medical domains. During the early days of this pandemic, artificial intelligence (AI) was utilized in the fight against this virus outbreak and it has played a major role in containing the spread of the virus. It provided innovative opportunities to speed up the development of disease interventions. Several methods, models, AI-based devices, robotics, and technologies have been proposed and utilized for diverse tasks such as surveillance, spread prediction, peak time prediction, classification, hospitalization, healthcare management, heath system capacity, etc. This paper attempts to provide a quick, concise, and precise survey of the state-of-the-art AI-based techniques, technologies, and datasets used in fighting COVID-19. Several domains, including forecasting, surveillance, dynamic times series forecasting, spread prediction, genomics, compute vision, peak time prediction, the classification of medical imaging-including CT and X-ray and how they can be processed-and biological data (genome and protein sequences) have been investigated. An overview of the open-access computational resources and platforms is given and their useful tools are pointed out. The paper presents the potential research areas in AI and will thus encourage researchers to contribute to fighting against the virus and aid global health by slowing down the spread of the virus. This will be a significant contribution to help minimize the high death rate across the globe.
Collapse
Affiliation(s)
- Umar Albalawi
- Faculty of Computing and Information Technology, University of Tabuk, KSA, Tabuk 71491, Saudi Arabia;
- Industrial Innovation and Robotics Center, University of Tabuk, KSA, Tabuk 71491, Saudi Arabia
| | - Mohammed Mustafa
- Faculty of Computing and Information Technology, University of Tabuk, KSA, Tabuk 71491, Saudi Arabia;
- Industrial Innovation and Robotics Center, University of Tabuk, KSA, Tabuk 71491, Saudi Arabia
| |
Collapse
|
12
|
Gong X, Hou M, Han Y, Liang H, Guo R. Application of the Internet Platform in Monitoring Chinese Public Attention to the Outbreak of COVID-19. Front Public Health 2022; 9:755530. [PMID: 35155335 PMCID: PMC8831856 DOI: 10.3389/fpubh.2021.755530] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Accepted: 12/24/2021] [Indexed: 11/13/2022] Open
Abstract
Objectives The internet data is an essential tool for reflecting public attention to hot issues. This study aimed to use the Baidu Index (BDI) and Sina Micro Index (SMI) to confirm correlation between COVID-19 case data and Chinese online data (public attention). This could verify the effect of online data on early warning of public health events, which will enable us to respond in a more timely and effective manner. Methods Spearman correlation was used to check the consistency of BDI and SMI. Time lag cross-correlation analysis of BDI, SMI and six case-related indicators and multiple linear regression prediction were performed to explore the correlation between public concern and the actual epidemic. Results The public's usage trend of the Baidu search engine and Sina Weibo was consistent during the COVID-19 outbreak. BDI, SMI and COVID-19 indicators had significant advance or lag effects, among which SMI and six indicators all had advance effects while BDI only had advance effects with new confirmed cases and new death cases. But compared with the SMI, the BDI was more closely related to the epidemic severity. Notably, the prediction model constructed by BDI and SMI can well fit new confirmed cases and new death cases. Conclusions The confirmed associations between the public's attention to the outbreak of COVID and the trend of epidemic outbreaks implied valuable insights into effective mechanisms of crisis response. In response to public health emergencies, people can through the information recommendation functions of social media and search engines (such as Weibo hot search and Baidu homepage recommendation) to raise awareness of available disease prevention and treatment, health services, and policy change.
Collapse
Affiliation(s)
- Xue Gong
- School of Public Health, Capital Medical University, Beijing, China
| | - Mengchi Hou
- School of Public Health, Capital Medical University, Beijing, China
| | - Yangyang Han
- Department of Outpatient, Beijing Hospital of Traditional Chinese Medicine, Capital Medical University, Beijing, China
| | - Hailun Liang
- School of Public Administration and Policy, Renmin University of China, Beijing, China
| | - Rui Guo
- School of Public Health, Capital Medical University, Beijing, China
| |
Collapse
|
13
|
Equbal A, Masood S, Equbal I, Ahmad S, Khan NZ, Khan ZA. Artificial Intelligence against COVID-19 Pandemic: A Comprehensive Insight. Curr Med Imaging 2022; 19:1-18. [PMID: 34607548 DOI: 10.2174/1573405617666211004115208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Revised: 08/11/2021] [Accepted: 08/30/2021] [Indexed: 11/22/2022]
Abstract
COVID-19 is a pandemic initially identified in Wuhan, China, which is caused by a novel coronavirus, also recognized as the Severe Acute Respiratory Syndrome (SARS-nCoV-2). Unlike other coronaviruses, this novel pathogen may cause unusual contagious pain, which results in viral pneumonia, serious heart problems, and even death. Researchers worldwide are continuously striving to develop a cure for this highly infectious disease, yet there are no well-defined absolute treatments available at present. Several vaccination drives using emergency use authorisation vaccines have been held across many countries; however, their long-term efficacy and side-effects studies are yet to be studied. Various analytical and statistical models have been developed, however, their outcome rate is prolonged. Thus, modern science stresses the application of state-of-the-art methods to combat COVID-19. This paper aims to provide a deep insight into the comprehensive literature about AI and AI-driven tools in the battle against the COVID-19 pandemic. The high efficacy of these AI systems can be observed in terms of highly accurate results, i.e., > 95%, as reported in various studies. The extensive literature reviewed in this paper is divided into five sections, each describing the application of AI against COVID-19 viz. COVID-19 prevention, diagnostic, infection spread trend prediction, therapeutic and drug repurposing. The application of Artificial Intelligence (AI) and AI-driven tools are proving to be useful in managing and fighting against the COVID-19 pandemic, especially by analysing the X-Ray and CT-Scan imaging data of infected subjects, infection trend predictions, etc.
Collapse
Affiliation(s)
- Azhar Equbal
- Department of Mechanical Engineering, Jamia Millia Islamia, New Delhi, India
| | - Sarfaraz Masood
- Department of Computer Engineering, Jamia Millia Islamia, New Delhi, India
| | - Iftekhar Equbal
- Department of Rural Management, Xavier Institute of Social Service, Jharkhand, India
| | - Shafi Ahmad
- Department of Mechanical Engineering, Jamia Millia Islamia, New Delhi, India
| | - Noor Zaman Khan
- National Institute of Technology Srinagar, Hazratbal, Srinagar, Jammu, and Kashmir, India
| | - Zahid A Khan
- Department of Mechanical Engineering, Jamia Millia Islamia, New Delhi, India
| |
Collapse
|
14
|
Adaptively temporal graph convolution model for epidemic prediction of multiple age groups. FUNDAMENTAL RESEARCH 2021. [PMCID: PMC8349400 DOI: 10.1016/j.fmre.2021.07.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
Introduction Multivariate time series prediction of infectious diseases is significant to public health, and the deep learning method has attracted increasing attention in this research field. Material and methods An adaptively temporal graph convolution (ATGCN) model, which learns the contact patterns of multiple age groups in a graph-based approach, was proposed for COVID- 19 and influenza prediction. We compared ATGCN with autoregressive models, deep sequence learning models, and experience- based ATGCN models in short-term and long-term prediction tasks. Results Results showed that the ATGCN model performed better than the autoregressive models and the deep sequence learning models on two datasets in both short-term (12.5% and 10% improvements on RMSE) and long-term (12.4% and 5% improvements on RMSE) prediction tasks. And the RMSE of ATGCN predictions fluctuated least in different age groups of COVID- 19 (0.029 ± 0.003) and influenza (0.059±0.008). Compared with the Ones-ATGCN model or the Pre-ATGCN model, the ATGCN model was more robust in performance, with RMSE of 0.0293 and 0.06 on two datasets when horizon is one. Discussion Our research indicates a broad application prospect of deep learning in the field of infectious disease prediction. Transmission characteristics and domain knowledge of infectious diseases should be further applied to the design of deep learning models and feature selection. Conclusion The ATGCN model addressed the multivariate time series forecasting in a graph-based deep learning approach and achieved robust prediction on the confirmed cases of multiple age groups, indicating its great potentials for exploring the implicit interactions of multivariate variables.
Collapse
|
15
|
Alfred R, Obit JH. The roles of machine learning methods in limiting the spread of deadly diseases: A systematic review. Heliyon 2021; 7:e07371. [PMID: 34179541 PMCID: PMC8219638 DOI: 10.1016/j.heliyon.2021.e07371] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 10/20/2020] [Accepted: 06/17/2021] [Indexed: 12/03/2022] Open
Abstract
Machine learning (ML) methods can be leveraged to prevent the spread of deadly infectious disease outbreak (e.g., COVID-19). This can be done by applying machine learning methods in predicting and detecting the deadly infectious disease. Most reviews did not discuss about the machine learning algorithms, datasets and performance measurements used for various applications in predicting and detecting the deadly infectious disease. In contrast, this paper outlines the literature review based on two major ways (e.g., prediction, detection) to limit the spread of deadly disease outbreaks. Hence, this study aims to investigate the state of the art, challenges and future works of leveraging ML methods to detect and predict deadly disease outbreaks according to two categories mentioned earlier. Specifically, this study provides a review on various approaches (e.g., individual and ensemble models), types of datasets, parameters or variables and performance measures used in the previous works. The literature review included all articles from journals and conference proceedings published from 2010 through 2020 in Scopus indexed databases using the search terms Predicting Disease Outbreaks and/or Detecting Disease using Machine Learning. The findings from this review focus on commonly used machine learning approaches, challenges and future works to limit the spread of deadly disease outbreaks through preventions and detections.
Collapse
Affiliation(s)
- Rayner Alfred
- Corresponding author. http://www.machineintelligencespace.com
| | | |
Collapse
|
16
|
Equbal A, Akhter S, Sood AK, Equbal I. The usefulness of additive manufacturing (AM) in COVID-19. ANNALS OF 3D PRINTED MEDICINE 2021; 2:100013. [PMID: 38620418 PMCID: PMC8074494 DOI: 10.1016/j.stlm.2021.100013] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Accepted: 04/20/2021] [Indexed: 12/24/2022] Open
Abstract
COVID-19 caused by novel coronavirus is a serious pandemic that has affected the various countries all across the globe. The effect of this pandemic is so devastating that many rising nations are brought to their knees and struggling to save the damage posed to their economy. Medical professionals and the healthcare community are paying their best effort to minimize and overcome the spread of this pandemic. To continue to fight against the COVID-19, healthcare delivery systems require the support of novel technologies which can meet their rapid demand for medical equipment and devices. The study explores the damage caused by COVID-19 to the industrial sector and the way AM is contributing to the economy post-COVID-19. State of the art concerning the application of AM in the present scenario especially to support the interrupted global supply chain is collected and analysed to identify its relevance in the battle against COVID-19.
Collapse
Affiliation(s)
- Azhar Equbal
- Department of Mechanical Engineering, Faculty of Engineering and Technology, Jamia Millia Islamia, New Delhi 110025, India
| | - Shahid Akhter
- Centre for Management Studies, Jamia Millia Islamia, New Delhi 110025, India
| | - Anoop Kumar Sood
- Department of Manufacturing Engineering, National Institute of Foundry and Forge Technology, Ranchi, Jharkhand, 834003, India
| | - Iftekhar Equbal
- Department of rural Management, Xavier Institute of Social Service, Jharkhand, 834001, India
| |
Collapse
|
17
|
Chen M, Xu S, Husain L, Galea G. Digital health interventions for COVID-19 in China: a retrospective analysis. INTELLIGENT MEDICINE 2021; 1:29-36. [PMID: 34447602 PMCID: PMC8079943 DOI: 10.1016/j.imed.2021.03.001] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Revised: 03/18/2021] [Accepted: 03/18/2021] [Indexed: 01/10/2023]
Abstract
BACKGROUND The use of digital health technologies was an integral part to China's early response to coronavirus disease 2019 (COVID-19). Existing literatures have analyzed and discussed implemented digital health innovations from the perspective of technologies, whereas how policy mechanisms contributed to the formulation of the digital health landscape for COVID-19 was overlooked. This study aimed to examine the contexts and key mechanisms in China's rapid mobilization of digital health interventions in response to COVID-19, and to document and share lessons learned. METHODS Policy documents were identified and retrieved from government portals and recognized media outlets. Data on digital health interventions were collected through three consecutive surveys administered between 23 January 2020 and 31 March 2020 by China Academy of Information and Communication Technology (CAICT) affiliated to the Ministry of Industry and Information Technology (MIIT). Participants were member companies of the Internet Health alliance established by MIIT and the National Health Commission (NHC) in June 2016. Self-report digital interventions focusing on social and economic recovery were excluded. Two hundred and sixty-six unique digital health interventions meeting our criteria were extracted from 175 narratives on digital health interventions submitted by 116 participating companies. Thematic analysis was conducted to describe the scope and priority of policies advocating for the use of digital health technologies and the implementation pattern of digital health interventions. Data limitations precluded an evaluation of the impact of digital health interventions over a longer time frame. RESULTS Between January and March 2020, national policy directives promoting the use of digital technologies for the containment of COVID-19 collectively advocated for use cases in emergency planning and preparedness, public health response, and clinical services. Interventions to strengthen clinical services were mentioned more than the other two themes (n = 15, 62.5% (15/24)). Using digital technologies for public health response was mentioned much less than clinical services (n = 5, 20.8% (5/24)). Emergency planning and preparedness was least mentioned (n = 4, 16.7% (4/24)). Interventions in support of clinical services disproportionately favored healthcare facilities in less resource-constraint settings. Digital health interventions shared the same pattern of distribution. More digital health technologies were implemented in clinical services (n = 103, 38.7% (103/266)) than that in public health response (n = 91, 34.2% (91/266)). Emergency planning and preparedness had the least self-reported digital health interventions (n = 72, 27.1% (72/266)). We further identified case studies under each theme in which the wide use of digital health technologies highlighted contextual factors and key enabling mechanisms. CONCLUSIONS The contextual factors and key enabling mechanisms through the use of policy instruments to promote digital health interventions for COVID-19 in China include pathway of policy directives influencing the private sector using a decentralized system, the booming digital health landscape before COVID-19, agility of the public sector in introducing regulatory flexibilities and incentives to mobilize the private sector.
Collapse
Affiliation(s)
- Mengji Chen
- World Health Organization Representative Office in China, Beijing 100600, China
| | - Shan Xu
- China Academy of Information Communications Technology, Beijing 100191, China
| | - Lewis Husain
- World Health Organization Representative Office in China, Beijing 100600, China
| | - Gauden Galea
- World Health Organization Representative Office in China, Beijing 100600, China
| |
Collapse
|
18
|
Sy C, Ching PM, San Juan JL, Bernardo E, Miguel A, Mayol AP, Culaba A, Ubando A, Mutuc JE. Systems Dynamics Modeling of Pandemic Influenza for Strategic Policy Development: a Simulation-Based Analysis of the COVID-19 Case. PROCESS INTEGRATION AND OPTIMIZATION FOR SUSTAINABILITY 2021. [PMCID: PMC7841385 DOI: 10.1007/s41660-021-00156-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
The novel coronavirus disease 2019 (COVID-19) is a truly wicked problem which has remained a stubborn issue plaguing multiple countries worldwide. The continuously increasing number of infections and deaths has driven several countries to implement control and response strategies including community lockdowns, physical distancing, and travel bans with different levels of success. However, a disease outbreak and the corresponding policies can cause disastrous economic consequences due to business closures and risk minimization behaviors. This paper develops a system dynamics framework of a disease outbreak system covering various policies to evaluate their effectiveness in mitigating transmission and the resulting economic burden. The system dynamics modeling approach captures the relationships, feedbacks, and delays in such a system, revealing meaningful insights on the dynamics of several response strategies.
Collapse
Affiliation(s)
- Charlle Sy
- Industrial Engineering Department, De La Salle University, 2401 Taft Avenue, 0922 Manila, Philippines
- Center for Engineering and Sustainable Development Research, De La Salle University, 2401 Taft Avenue, 0922 Manila, Philippines
| | - Phoebe Mae Ching
- Department of Industrial Engineering and Decision Analytics, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong
| | - Jayne Lois San Juan
- Industrial Engineering Department, De La Salle University, 2401 Taft Avenue, 0922 Manila, Philippines
- Center for Engineering and Sustainable Development Research, De La Salle University, 2401 Taft Avenue, 0922 Manila, Philippines
| | - Ezekiel Bernardo
- Industrial Engineering Department, De La Salle University, 2401 Taft Avenue, 0922 Manila, Philippines
| | - Angelimarie Miguel
- Industrial Engineering Department, De La Salle University, 2401 Taft Avenue, 0922 Manila, Philippines
| | - Andres Philip Mayol
- Center for Engineering and Sustainable Development Research, De La Salle University, 2401 Taft Avenue, 0922 Manila, Philippines
- Mechanical Engineering Department, De La Salle University, 2401 Taft Avenue, 0922 Manila, Philippines
| | - Alvin Culaba
- Center for Engineering and Sustainable Development Research, De La Salle University, 2401 Taft Avenue, 0922 Manila, Philippines
- Mechanical Engineering Department, De La Salle University, 2401 Taft Avenue, 0922 Manila, Philippines
| | - Aristotle Ubando
- Center for Engineering and Sustainable Development Research, De La Salle University, 2401 Taft Avenue, 0922 Manila, Philippines
- Mechanical Engineering Department, De La Salle University, 2401 Taft Avenue, 0922 Manila, Philippines
| | - Jose Edgar Mutuc
- Industrial Engineering Department, De La Salle University, 2401 Taft Avenue, 0922 Manila, Philippines
- Center for Engineering and Sustainable Development Research, De La Salle University, 2401 Taft Avenue, 0922 Manila, Philippines
| |
Collapse
|
19
|
Artificial intelligence–enabled public health surveillance—from local detection to global epidemic monitoring and control. Artif Intell Med 2021. [PMCID: PMC7484813 DOI: 10.1016/b978-0-12-821259-2.00022-3] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
20
|
Ribeiro MHDM, Mariani VC, Coelho LDS. Multi-step ahead meningitis case forecasting based on decomposition and multi-objective optimization methods. J Biomed Inform 2020; 111:103575. [PMID: 32976990 PMCID: PMC7507988 DOI: 10.1016/j.jbi.2020.103575] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2019] [Revised: 09/10/2020] [Accepted: 09/16/2020] [Indexed: 12/23/2022]
Abstract
Epidemiological time series forecasting plays an important role in health public systems, due to its ability to allow managers to develop strategic planning to avoid possible epidemics. In this paper, a hybrid learning framework is developed to forecast multi-step-ahead (one, two, and three-month-ahead) meningitis cases in four states of Brazil. First, the proposed approach applies an ensemble empirical mode decomposition (EEMD) to decompose the data into intrinsic mode functions and residual components. Then, each component is used as the input of five different forecasting models, and, from there, forecasted results are obtained. Finally, all combinations of models and components are developed, and for each case, the forecasted results are weighted integrated (WI) to formulate a heterogeneous ensemble forecaster for the monthly meningitis cases. In the final stage, a multi-objective optimization (MOO) using the Non-Dominated Sorting Genetic Algorithm – version II is employed to find a set of candidates’ weights, and then the Technique for Order of Preference by similarity to Ideal Solution (TOPSIS) is applied to choose the adequate set of weights. Next, the most adequate model is the one with the best generalization capacity out-of-sample in terms of performance criteria including mean absolute error (MAE), relative root mean squared error (RRMSE), and symmetric mean absolute percentage error (sMAPE). By using MOO, the intention is to enhance the performance of the forecasting models by improving simultaneously their accuracy and stability measures. To access the model’s performance, comparisons based on metrics are conducted with: (i) EEMD, heterogeneous ensemble integrated by direct strategy, or simple sum; (ii) EEMD, homogeneous ensemble of components WI; (iii) models without signal decomposition. At this stage, MAE, RRMSE, and sMAPE criteria as well as Diebold–Mariano statistical test are adopted. In all twelve scenarios, the proposed framework was able to perform more accurate and stable forecasts, which showed, on 89.17% of the cases, that the errors of the proposed approach are statistically lower than other approaches. These results showed that combining EEMD, heterogeneous ensemble and WI with weights obtained by optimization can develop precise and stable forecasts. The modeling developed in this paper is promising and can be used by managers to support decision making. Ensemble empirical mode decomposition is applied into the raw time series. Heterogeneous ensemble learning models are used to forecasting meningitis cases. The NSGA-II algorithm and TOPSIS criterion are employed in the multi-objective procedure. Proposed model has errors statistically lower than 89.17% of the compared models. Promising results are achieved by the weighted integrated ensemble learning model.
Collapse
Affiliation(s)
- Matheus Henrique Dal Molin Ribeiro
- Graduate Program in Industrial & Systems Engineering (PPGEPS), Pontifical Catholic University of Parana (PUCPR), 1155, Rua Imaculada Conceicao, Curitiba, Parana, 80215-901, Brazil; Department of Mathematics, Federal Technological University of Parana (UTFPR), Via do Conhecimento, KM 01 - Fraron, Pato Branco, Parana, 85503-390, Brazil.
| | - Viviana Cocco Mariani
- Department of Electrical Engineering, Federal University of Parana (UFPR), 100, Avenida Cel. Francisco dos Santos, Curitiba, Parana, 81530-000, Brazil; Mechanical Engineering Graduate Program (PPGEM), Pontifical Catholic University of Parana (PUCPR), 1155, Rua Imaculada Conceicao, Curitiba, Parana, 80215-901, Brazil
| | - Leandro Dos Santos Coelho
- Graduate Program in Industrial & Systems Engineering (PPGEPS), Pontifical Catholic University of Parana (PUCPR), 1155, Rua Imaculada Conceicao, Curitiba, Parana, 80215-901, Brazil; Department of Electrical Engineering, Federal University of Parana (UFPR), 100, Avenida Cel. Francisco dos Santos, Curitiba, Parana, 81530-000, Brazil
| |
Collapse
|
21
|
Abstract
The recent worldwide outbreak of the novel coronavirus (COVID-19) has opened up new challenges to the research community. Artificial intelligence (AI) driven methods can be useful to predict the parameters, risks, and effects of such an epidemic. Such predictions can be helpful to control and prevent the spread of such diseases. The main challenges of applying AI is the small volume of data and the uncertain nature. Here, we propose a shallow long short-term memory (LSTM) based neural network to predict the risk category of a country. We have used a Bayesian optimization framework to optimize and automatically design country-specific networks. The results show that the proposed pipeline outperforms state-of-the-art methods for data of 180 countries and can be a useful tool for such risk categorization. We have also experimented with the trend data and weather data combined for the prediction. The outcome shows that the weather does not have a significant role. The tool can be used to predict long-duration outbreak of such an epidemic such that we can take preventive steps earlier.
Collapse
|
22
|
Awan TM, Aslam F. Prediction of daily COVID-19 cases in European countries using automatic ARIMA model. J Public Health Res 2020; 9:1765. [PMID: 32874964 PMCID: PMC7445441 DOI: 10.4081/jphr.2020.1765] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Accepted: 06/12/2020] [Indexed: 01/29/2023] Open
Abstract
The recent pandemic (COVID-19) emerged in Wuhan city of China and after causing a lot of destruction there recently changed its epicenter to Europe. There are countless people affected and reported cases are increasing day by day. Predictive models need to consider previous reported cases and forecast the upcoming number of cases. Automatic ARIMA, one of the predictive models used for forecasting contagions, was used in this study to predict the number of confirmed cases for next 10 days in four top European countries through R package "forecast". The study finds that Auto ARIMA applied on the sample satisfactorily forecasts the confirmed cases of coronavirus for next ten days. The confirmed cases for the four countries show an increasing trend for the next ten days with Spain with a highest number of expected new confirmed cases, followed by Germany and France. Italy is expected to have lowest number of new confirmed cases among the four countries.
Collapse
Affiliation(s)
- Tahir Mumtaz Awan
- Department of Management Sciences, COMSATS University, Islamabad, Pakistan
| | | |
Collapse
|
23
|
Correlation Studies between Land Cover Change and Baidu Index: A Case Study of Hubei Province. ISPRS INTERNATIONAL JOURNAL OF GEO-INFORMATION 2020. [DOI: 10.3390/ijgi9040232] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Current land cover research focuses primarily on spatial changes in land cover and the driving forces behind these changes. Among such forces is the influence of policy, which has proven difficult to measure, and no quantitative research has been conducted. On the basis of previous studies, we took Hubei Province as the research area, using remote sensing (RS) images to extract land cover change data using a single land use dynamic degree and a comprehensive land use dynamic degree to study land cover changes from 2000 to 2015. Then, after introducing the Baidu Index (BDI), we explored its relationship with land cover change and built a tool to quantitatively measure the impact of changes in land cover. The research shows that the key search terms in the BDI are ‘cultivated land occupation tax’ and ‘construction land planning permit’, which are closely related to changes in cultivated land and construction land, respectively. Cultivated land and construction land in all regions of Hubei Province are affected by policy measures with the effects of policy decreasing the greater the distance from Wuhan, while Wuhan is the least affected region.
Collapse
|
24
|
Holst C, Sukums F, Radovanovic D, Ngowi B, Noll J, Winkler AS. Sub-Saharan Africa-the new breeding ground for global digital health. Lancet Digit Health 2020; 2:e160-e162. [PMID: 33328076 DOI: 10.1016/s2589-7500(20)30027-3] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2019] [Revised: 02/04/2020] [Accepted: 02/06/2020] [Indexed: 10/24/2022]
Affiliation(s)
- Christine Holst
- Centre for Global Health, Institute of Health and Society, University of Oslo, 0318 Oslo, Norway.
| | - Felix Sukums
- Muhimbili University of Health and Allied Sciences, Dar es Salaam, Tanzania
| | | | - Bernard Ngowi
- National Institute for Medical Research, Dar es Salaam and University of Dar es Salaam College of Health and Allied Sciences, Tanzania
| | - Josef Noll
- Department of Technology Systems, University of Oslo, 0318 Oslo, Norway; Basic Internet Foundation, Kjeller, Norway
| | - Andrea Sylvia Winkler
- Centre for Global Health, Institute of Health and Society, University of Oslo, 0318 Oslo, Norway; Center for Global Health, Department of Neurology, Technical University of Munich, Germany
| |
Collapse
|