Bioaccumulation and biosorption of Cd(2+) and Zn(2+) by bacteria isolated from a zinc mine in Thailand

Analysis of the Cadmium Removal Mechanism of Human Gut Bacteria Enterococcus faecalis Strain ATCC19433 from a Genomic Perspective

Cadmium (Cd) is one of the most well-known toxic metals capable of entering the human body via the food chain, leading to serious health problems. Human gut microbes play a pivotal role in controlling Cd bioavailability and toxicity within the human gastrointestinal tract, primarily due to their capacity for Cd adsorption and metabolism. In this work, a Cd-resistant bacterial strain, Enterococcus faecalis strain ATCC19433 was isolated from human gut microbiota. Cd binding assays and comprehensive characterization analyses were performed, revealing the ability of strain ATCC19433 to remove Cd from the solution. Cd adsorption primarily occurred on the bacterial cell walls, which was ascribed to the exciting of functional groups on the bacterial surfaces, containing alkyl, amide II, and phosphate groups; meanwhile, Cd could enter cells, probably through transport channels or via diffusion. These results indicated that Cd removal by the strain was predominantly dependent on biosorption and bioaccumulation. Whole-genome sequencing analyses further suggested the probable mechanisms of biosorption and bioaccumulation, including Cd transport by transporter proteins, active efflux of Cd by cadmium efflux pumps, and mitigating oxidative stress-induced cell damage by DNA repair proteases. This study evaluated the Cd removal capability and mechanism of Enterococcus faecalis strain ATCC19433 while annotating the genetic functions related to Cd removal, which may facilitate the development of potential human gut strains for the removal of Cd.

Identification of cadmium-tolerant plant growth-promoting rhizobacteria and characterization of its Cd-biosorption and strengthening effect on phytoremediation: Development of a new amphibious-biocleaner for Cd-contaminated site

The use of plant growth-promoting rhizobacteria (PGPR) in decontaminating cadmium-contaminated soil and water is a sustainable and eco-friendly approach. This study aimed to isolate a PGPR strain from the rhizosphere soil of Solanum nigrum and evaluate its potential and mechanisms in remediating Cd-contaminated environments. The results showed that the isolated strain, Klebsiella sp. AW2, can tolerate 240 mg/L Cd2+. Batch biosorption experiments indicated that the optimal conditions for PGPR biosorption were a pH of 5.0, a biosorbent dosage of 1.0 g/L, and a Cd2+ concentration of 10 mg/L, resulting in a biosorption rate of 40.99%. Model fitting results revealed that the Cd biosorption process followed a uniform surface monolayer chemisorption mechanism, likely involving complexation with functional groups such as -NH, -OH, and -C=O, according to Fourier transform infrared spectrometer and desorption experiments. Furthermore, pot experiments demonstrated that PGPR application significantly enhanced the phytoremediation efficiency of Cd-contaminated soil, increasing the phytoextraction ratio by 32.41%. This improvement was primarily achieved by promoting S. nigrum growth and facilitating Cd horizontal transfer from rhizosphere soil to plants through influencing the rhizosphere soil physicochemical properties and Cd2+ influx in roots. In addition, the copy number of the 16S rRNA gene of the PGPR revealed that the PGPR was predominantly localized in the rhizosphere soil, directly leading to increased availability of Cd for plant uptake. Overall, these findings indicate that Klebsiella sp. AW2 is a promising biocleaner for Cd-contaminated environments and provide valuable insights into the application of biosorbents in phytoremediation efforts.

Microbial-inoculated biochar for remediation of salt and heavy metal contaminated soils

Numerous harmful contaminants (i.e. salt and heavy metals) have become major threats to soil and are being introduced into the soil through human and geological activities. These contaminants are raising global concerns about their toxic effects on food safety, human health and reclamation mechanisms. Microbial-inoculated biochar can improve soil environment by immobilizing and transforming contaminants in soil and altering the physico-chemical and biochemical properties of soil. In this review we will discuss the positive effects of microbial-modified biochar on physicochemical properties of contaminated soil. It can decrease the pH, EC while increase CEC, OM and other biochemical properties of soil. Additionally, we discuss the efficacy of biochar as a microbial carrier for salt and heavy metals-contaminated soil and plant growth in those soils. This review provides a better understanding of the potential of microbial biochar can be used for bioremediation of contaminated soil, which will help the researcher to modify biochar in a targeted way for specific applications.

Uptake of lead, cadmium and copper by heavy metal-resistant Pseudomonas aeruginosa strain DR7 isolated from soil

This study highlights the biosorption capacity for Cd (II), Cu (II) and Pb (II) by a locally isolated Pseudomonas aeruginosa DR7. At initial concentrations of 150 mg L-1 and 240 min of contact time, P. aeruginosa DR7 showed a 62.56 mg/g removal capacity for Cd (II) at an optimum pH of 6.0, 72.49 mg/g for Cu (II) at an optimum pH of 6.0, and 94.2 mg/g for Pb (II) at an optimum pH of 7.0. The experimental data of Cd (II), Cu (II), and Pb (II) adsorbed by the pseudo-second-order kinetic model correlates well with P. aeruginosa DR7, with R2 all above 0.99, showing that the fitting effect was satisfactory. The isothermal adsorption processes of Cd (II) (0.980) and Cu (II) (0.986) were more consistent with the Freundlich model, whereas Pb (II) was more consistent with the Langmuir model (0.978). FTIR analysis suggested the involvement of hydroxyl, carbonyl, carboxyl, and amine groups present in the inner regions of P. aeruginosa cells during the biosorption process. SEM-EDS analysis revealed that after contact with metals, there were slight changes in the surface appearance of the cells, which confirmed the deposition of metals on the bacterial surface. There was also the possibility of the metals being translocated into the bacterial inner regions by the appearance of electron-dense particles, as observed using TEM. As a conclusion, the removal of metals from solutions using P. aeruginosa DR7 was a plausible alternative as a safe, cheap, and easily used biosorbent.

Genomic and transcriptomic analyses reveal insights into cadmium resistance mechanisms of Cupriavidus nantongensis strain E324

The cadmium-resistant Cupriavidus sp. strain E324 has been previously shown to have a high potential for use in cadmium (Cd) remediation, due to its high capacity for cadmium bioaccumulation. According to the comparative genomic analysis, the strain E324 was most closely related to C. nantongensis X1T, indicating that the strain E324 should be re-identified as C. nantongensis. To unravel the Cd tolerance mechanisms of C. nantongensis strain E324, the transcriptional response of this strain to acute Cd exposure was assessed using RNA-seq-based transcriptome analysis, followed by validation through qRT-PCR. The results showed that the upregulated Differentially Expressed Genes (DEGs) were significantly enriched in categories related to metal binding and transport, phosphate transport, and oxidative stress response. Consistently, we observed significant increases in both the cell wall and intracellular contents of certain essential metals (Cu, Fe, Mn, and Zn) upon Cd exposure. Among these, only the Zn pretreatment resulting in high Zn accumulation in the cell walls could enhance bacterial growth under Cd stress conditions through its role in inhibiting Cd accumulation. Additionally, the promotion of catalase activity and glutathione metabolism upon Cd exposure to cope with Cd-induced oxidative stress was demonstrated. Meanwhile, the upregulation of phosphate transport-related genes upon Cd treatment seems to be the bacterial response to Cd-induced phosphate depletion. Altogether, our findings suggest that these adaptive responses are critical mechanisms contributing to increased Cd tolerance in C. nantongensis strain E324 via the enhancement of metal-chelating and antioxidant capacities of the cells.

Deep-sea microorganisms-driven V5+ and Cd2+ removal from vanadium smelting wastewater: Bacterial screening, performance and mechanism

The disorderly discharge of industrial wastewater containing heavy metals has caused serious water pollution and ecological environmental risks, ultimately threatening human life and health. Biological treatment methods have obvious advantages, but the existing microorganisms exhibit issues such as poor resistance, adaptability, colonization ability, and low activity. However, a wide variety of microorganisms in deep-sea hydrothermal vent areas are tolerant to heavy metals, possessing the potential for efficient treatment of heavy metal wastewater. Based on this, the study obtained a group of deep-sea microbial communities dominated by Burkholderia-Caballeronia-Paraburkholderia through shake flask experiments from the sediments of deep-sea hydrothermal vents, which can simultaneously achieve the synchronous removal of vanadium and cadmium heavy metals through bioreduction, biosorption, and biomineralization. Through SEM-EDS, XRD, XPS, and FT-IR analyses, it was found that V(V) was reduced to V(IV) through a reduction process and subsequently precipitated. Glucose oxidation accelerated this process. Cd(II) underwent biomineralization to form precipitates such as cadmium hydroxide and cadmium carbonate. Functional groups on the microbial cell surface, such as -CH2, C=O, N-H, -COOH, phosphate groups, amino groups, and M-O moieties, participated in the bioadsorption processes of V(V) and Cd(II) heavy metals. Under optimal conditions, namely a temperature of 40 °C, pH value of 7.5, inoculation amount of 10%, salinity of 4%, COD concentration of 600 mg/L, V5+ concentration of 300 mg/L, and Cd2+ concentration of 40 mg/L, the OD600 can reach its highest at 72 h, with the removal efficiency of V5+, Cd2+, and COD in simulated vanadium smelting wastewater reaching 86.32%, 59.13%, and 61.63%, respectively. This study provides theoretical insights and practical evidence for understanding the dynamic changes in microbial community structure under heavy metal stress, as well as the resistance mechanisms of microbial treatment of industrial heavy metal wastewater.

Efficient Immobilization of heavy metals using newly synthesized magnetic nanoparticles and some bacteria in a multi-metal contaminated soil

Simultaneous application of modified Fe3O4 with biological treatments in remediating multi-metal polluted soils, has rarely been investigated. Thus, a pioneering approach towards sustainable environmental remediation strategies is crucial. In this study, we aimed to improve the efficiency of Fe3O4 as adsorbents for heavy metals (HMs) by applying protective coatings. We synthesized core-shell magnetite nanoparticles coated with modified nanocellulose, nanohydrochar, and nanobiochar, and investigated their effectiveness in conjunction with bacteria (Pseudomonas putida and Bacillus megaterium) for remediating a multi-metal contamination soil. The results showed that the coatings significantly enhanced the immobilization of heavy metals in the soil, even at low doses (0.5%). The coating of nanocellulose had the highest efficiency in stabilizing metals due to the greater variety of surface functional groups and higher specific surface area (63.86 m2 g-1) than the other two coatings. Interestingly, uncoated Fe3O4 had lower performance (113.6 m2 g-1) due to their susceptibility to deformation and oxidation. The use of bacteria as a biological treatment led to an increase in the stabilization of metals in soil. In fact, Pseudomonas putida and Bacillus megaterium increased immobilization of HMs in soil successfully because of extracellular polymeric substances and intensive negative charges. Analysis of metal concentrations in plants revealed that Ni and Zn accumulated in the roots, while Pb and Cd were transferred from the roots to the shoots. Treatment Fe3O4 coated with modified nanocellulose at rates of 0.5 and 1% along with Pseudomonas putida showed the highest effect in stabilizing metals. Application of coated Fe3O4 for in-situ immobilization of HMs in contamination soils is recommendable due to their high metal stabilization efficiency and suitability to apply in large quantities.

Bioremediation of Pb contaminated water using a novel Bacillus sp. strain MHSD_36 isolated from Solanum nigrum

The Pb bioremediation mechanism of a multi-metal resistant endophytic bacteria Bacillus sp. strain MHSD_36, isolated from Solanum nigrum, was characterised. The strain tested positive for the presence of plant growth promoters such as indoleacetic acid, 1-aminocyclopropane-1-carboxylate deaminase, siderophores, and phosphate solubilization. The experimental data illustrated that exopolysaccharides and cell hydrophobicity played a role in Pb uptake. The data further showed that the cell wall biosorbed a significant amount (71%) of the total Pb (equivalent to 4 mg/L) removed from contaminated water, compared to the cell membrane (11%). As much as 11% of the Pb was recovered from the cytoplasmic fraction, demonstrating the ability of the strain to control the influx of toxic heavy metals into the cell and minimize their negative impacts. Pb biosorption was significantly influenced by the pH and the initial concentration of the toxic ions. Furthermore, the presence of siderophores and biosurfactants, when the strain was growing under Pb stress, was detected through liquid chromatography mass spectrometry. The strain demonstrated a multi-component based Pb biosorption mechanism and thus, has a great potential for application in heavy metal bioremediation.

Comprehensive assessment of carbon-, biomaterial- and inorganic-based adsorbents for the removal of the most hazardous heavy metal ions from wastewater

Owing to the high cost of recycling waste, underdeveloped countries discharge industrial, agricultural, and anthropogenic effluents without pretreatment. As a result, pollutant-loaded waste enters water bodies. Among the diverse toxic contaminants, heavy metal ions are the most detrimental because of their chronic toxicity, non-degradability, prevalence, and bioaccumulation. The growing shortage of water resources demands the removal of heavy metal ions from wastewater. Three SDGs of the sustainability agenda of the United Nations appeal for clean water to protect life beneath water and on land depending on the water sources. Therefore, efficient environmentally friendly approaches for wastewater treatment are urgently required. In this regard, several methods have been developed for the removal of heavy metal ions from wastewater, including adsorption as the most widely used method owing to its eco-friendly, cost-effective, and sustainable nature. The present review discusses the progress in the preparation and application of various adsorbents based on carbon, micro-organisms, agricultural waste and inorganic materials for the extraction of toxic metal ions such as Pb2+, Cr6+, As3+, As5+, Hg2+ and Cd2+. Herein, we provide information on the role of the homogeneity and heterogeneity of adsorbents, kinetics of the adsorption of an adsorbate on the surface of an adsorbent, insights into adsorption reaction pathways, the mechanism of the sorption process, and the uptake of solutes from solution. The present review will be useful for researchers working on environmental protection and clean environment.

Adsorption mechanism of Cd2+ on microbial inoculant and its potential for remediation Cd-polluted farmland soils

The adsorption characteristics and mechanism of Cd2+ on microbial inoculant (MI) mainly composed of Bacillus subtilis, Bacillus thuringiensis and Bacillus amyloliquefaciens, and its potential for remediation Cd polluted soils through batch adsorption and soil incubation experiments. It was found that the Freundlich isotherm model and the pseudo-second-order kinetics were more in line with the adsorption processes of Cd2+. The maximum adsorption capacity predicted by Langmuir isotherm model suggested that of MI was 57.38 mg g-1. Scanning electron microscopy and energy dispersive spectroscopy (SEM-EDS) images exhibited the surface structure of MI was damaged to varying degrees after adsorption, and Cd element was distributed on the surface of MI through ion exchange. X-ray diffraction (XRD) results showed that CdCO3 was formed on the surface of MI. Moreover, the functional groups (-OH, C-H, and -NH) involved in the adsorption of Cd2+ through fourier transform infrared spectroscopy (FTIR). After applying MI to Cd-contaminated soil, it was found that soil pH, conductivity (EC) and soil organic matter (SOM) increased by 0.84 %-2.43 %, 31.6 %-241.48 %, and 8.11 %-24.1 %, respectively, when compared with the control treatments. The content of DTPA-Cd in the soils was significantly (P < 0.05) reduced by 15.48 %-29.68 % in contrast with CK, and the Cd speciation was transformed into a more stable residual fraction. The activities of urease, phosphatase and sucrose were increased by 3.5 %-45.18 %, 57.00 %-134.18 % and 52.51 %-70.52 %, respectively, compared with CK. Therefore, MI could be used as an ecofriendly and sustainable material for bioremediation of Cd-contaminated soils.

Screening of cadmium-chromium-tolerant strains and synergistic remediation of heavy metal-contaminated soil using king grass combined with highly efficient microbial strains

The present study involved the isolation of two cadmium (Cd) and chromium (Cr) resistant strains, identified as Staphylococcus cohnii L1-N1 and Bacillus cereus CKN12, from heavy metal contaminated soils. S. cohnii L1-N1 exhibited a reduction of 24.4 % in Cr6+ and an adsorption rate of 6.43 % for Cd over a period of 5 days. These results were achieved under optimal conditions of pH (7.0), temperature (35 °C), shaking speed (200 rpm), and inoculum volume (8 %). B. cereus strain CKN12 exhibited complete reduction of Cr6+ within a span of 48 h, while it demonstrated a 57.3 % adsorption capacity for Cd over a period of 120 h. These results were achieved under conditions of optimal pH (8.0), temperature (40 °C), shaking speed (150 rpm), and inoculum volume (2-3 %). Additionally, microcharacterization and ICP-MS analysis revealed that Cr and Cd were accumulated on the cell surface, whereas Cr6+ was mainly reduced extracellularly. Subsequently, a series of pot experiments were conducted to provide evidence that the inclusion of S. cohnii L1-N1 or B. cereus CKN12 into the system resulted in a notable enhancement in both the plant height and biomass of king grass. In particular, it was observed that the presence of S. cohnii L1-N1 or B. cereus CKN12 in king grass led to a significant reduction in the levels of Cd and Cr in the soils (36.0 % and 27.8 %, or 72.9 % and 47.4 %, respectively). Thus, the results of this study indicate that the combined use of two bacterial strains can effectively aid in the remediation of tropical soils contaminated with moderate to light levels of Cd and Cr.

Biochemical, Catabolic, and PGP Activity of Microbial Communities and Bacterial Strains from the Root Zone of Baccharis linearis in a Mediterranean Mine Tailing

The management of mine tailings (MT) is commonly workload heavy, intrusive, and expensive. Phytostabilization offers a promising approach for MT management; however, it poses challenges due to the unfavorable physicochemical properties of these wastes. Nevertheless, native microorganisms capable of supporting plant growth and development could enhance the efficacy of phytostabilization. This study assesses the biological activity of microbial communities from the root zone of Baccharis linearis, which is naturally present in MT, in order to evaluate their biotechnological potential for phytostabilization. The root zone and bulk samples were collected from B. linearis plants located within a MT in the Mediterranean zone of Chile. Enzyme activities related to the cycling of C, N, and P were assessed. The community-level physiological profile was evaluated using the MicroRespTM system. Bacterial plant growth-promoting (PGP) traits and colony forming units (CFU) were evaluated through qualitative and microbiological methods, respectively. CFU, enzyme activities, and CLPP were higher in the root zone compared with the bulk samples. Five bacterial strains from the root zone exhibited PGP traits such as P solubilization and N acquisition, among others. The presence of microbial communities in the root zone of B. linearis with PGP traits suggests their potential to enhance the ecological management of MT through phytostabilization programs.

Removal of toxic metal Cd (II) by Serratia bozhouensis CdIW2 using in moving bed biofilm reactor (MBBR)

The use of bioreactor technology to treat industrial wastewater containing heavy metals has created new perspectives. Cadmium metal is one of the toxic heavy metals that have harmful effects on human health and the environment. This research work presents a comprehensive approach for aqueous cadmium removal through biosorption in a moving bed biofilm reactor (MBBR). The bacterium resistant to Cd(II) (350 mg/L) CdIW2 was selected among 8 cadmium tolerant bacteria isolated from the industrial wastewater of the metal industry. 16S rRNA gene and phenotypic analysis showed that the bacterium CdIW2 is similar to Serratia bozhouensis. The highest biosorption capacity of 65.79 mg/g was acquired in optimal conditions (30 min, pH = 6, 0.5 g/L, and 35 °C). The biosorption of the CdIW2 strain was consistent with the Langmuir isotherm and the pseudo-second order kinetic and showed the process's spontaneous thermodynamic and endothermic results. The removal rate 91.74% of MBBR in batch mode was obtained in 72 h and 10 mg/L of Cd(II). Furthermore, continuous mode bioreactor analysis has shown high efficiency at intel loading rates of 6-36 mg/L. day for cadmium removal. The second order kinetic (Grau) was chosen as the suitable model for modeling the MBBR process. Although several studies have evaluated the removal of various types of heavy metals, none of the studies involved the use of a metal-resistant strain in an MBBR bioreactor.

Isolation of cadmium-resistant microbial strains and their immobilisation of cadmium in soil

Six cadmium (Cd)-resistant microbial strains were isolated and their ability to immobilise Cd2+ in soil investigated. Cd-1, Cd-2, Cd-5, and Cd-6 were identified as Stenotrophomonas sp., Cd-3 as Achromobacter sp., and Cd-7 as Staphylococcus sp. The six strains showed a wide adaptation range for salinity and a strong tolerance to Cd2+. The effects of the initial Cd2+ concentration (1-100 mg/L), duration (18-72 h), temperature (10-40 °C), and pH (5.0-9.0) on the efficiency of Cd2+ removal were analysed. The results revealed that the Cd2+ removal rate was higher at an initial Cd2+ concentration of 5-100 mg/L than at 1 mg/L. The maximum Cd2+ removal effect was at a culture duration of 36 h, temperature of 10-35 °C, and pH of 5.0-7.0. X-ray diffraction (XRD) analysis revealed that the Cd2+ was immobilised by Stenotrophomonas sp. Cd-2 and Staphylococcus sp. Cd-7 through bio-precipitation. X-ray photoelectron spectroscopy (XPS) revealed that the Cd2+ was adsorbed by Stenotrophomonas sp. Cd-2, Achromobacter sp. Cd-3, and Staphylococcus sp. Cd-7. Fourier transform infrared spectroscopy (FTIR) analysis revealed that the isolates reacted with the Cd2+ mainly through the O-H, protein N-H, C-N, lipid C-H, fatty acid COO, polysaccharide C-O, P-O, and other functional groups, as well as with lipid molecules on the cell wall surfaces. Scanning electron microscopy (SEM) analysis revealed that there was little difference in the cells after Cd2+ treatment. The results of the soil remediation experiments indicated that the toxicity of Cd in soil could be effectively reduced using certain strains of microbe.

Safe Production Strategies for Soil-Covered Cultivation of Morel in Heavy Metal-Contaminated Soils

Morel is a popular edible mushroom with considerable medicinal and economic value which has garnered global popularity. However, the increasing heavy metal (HM) pollution in the soil presents a significant challenge to morels cultivation. Given the susceptibility of morels to HM accumulation, the quality and output of morels are at risk, posing a serious food safety concern that hinders the development of the morel industry. Nonetheless, research on the mechanism of HM enrichment and mitigation strategies in morel remains scarce. The morel, being cultivated in soil, shows a positive correlation between HM content in its fruiting body and the HM content in the soil. Therefore, soil remediation emerges as the most practical and effective approach to tackle HM pollution. Compared to physical and chemical remediation, bioremediation is a low-cost and eco-friendly approach that poses minimal threats to soil composition and structure. HMs easily enriched during morels cultivation were examined, including Cd, Cu, Hg, and Pb, and we assessed soil passivation technology, microbial remediation, strain screening and cultivation, and agronomic measures as potential approaches for HM pollution prevention. The current review underscores the importance of establishing a comprehensive system for preventing HM pollution in morels.

Adsorption of Cd (II) by a novel living and non-living Cupriavidus necator GX_5: optimization, equilibrium and kinetic studies

Biosorbents have been extensively studied for heavy metal adsorption due to their advantages of low cost and high efficiency. In the study, the living and non-living biomass of Cupriavidus necator GX_5 previously isolated were evaluated for their adsorption capacity and/or removal efficiency for Cd (II) through batch experiments, SEM and FT-IR investigations. The maximum removal efficiency rates for the live and dead biomass were 60.51% and 78.53%, respectively, at an optimum pH of 6, a dosage of 1 g/L and an initial Cd (II) concentration of 5 mg/L. The pseudo-second-order kinetic model was more suitable for fitting the experimental data, indicating that the rate-limiting step might be chemisorption. The Freundlich isotherm model fit better than the Langmuir isotherm model, implying that the adsorption process of both biosorbents was heterogeneous. FT-IR observation reflected that various functional groups were involved in Cd (II) adsorption: -OH, -NH, C=O, C-O and C-C groups for the living biomass and -OH, -NH, C-H, C = O, C-N and N-H groups for the dead biomass. Our results imply that non-living biosorbents have a higher capacity and stronger strength for absorbing Cd (II) than living biomass. Therefore, we suggest that dead GX_5 is a promising adsorbent and can be used in Cd (II)-contaminated environments.

Bioaccumulation for heavy metal removal: a review

This paper reviews plants and microorganisms removal of heavy metals from contaminated sites through bioaccumulation. Increased industrial activities have led to the uncontrolled release of metals into the environment, resulting in a global increase in metal pollution. Heavy metals are also consumed from the surface of glasses over a prolonged period of use. Heavy metal pollution is a serious problem that can have wide-ranging and long-lasting impacts on human health and the environment. Therefore, effective removal and remediation of heavy metal pollution are crucial to protect human and ecological health. Traditional methods of heavy metal removal, such as chemical treatment and physical removal, can be costly and can also have negative impacts on the environment. The utilization of plants and microorganisms for bioremediation of metal-polluted environments has proven effective for removing metals through accumulation and/or detoxification. This method is effective, economical, versatile, and environmentally friendly. Bioaccumulation utilizes plants and microorganisms to absorb and remove heavy metals from contaminated sites. This method is not only cost-effective but also helps to minimize the environmental impact of heavy metal pollution. Additionally, bioaccumulation can be used in combination with other techniques, such as phytostabilization and phytodegradation, to further improve the efficiency of heavy metal removal. The paper also discusses the use of plants and microorganisms in the removal of heavy metals from water and soil through biomagnification and bioconcentration. Techniques such as phytoaccumulation, phytostimulation, phytodegradation, phytovolatilization, phytostabilization, and phytofiltration are also discussed as effective ways of remediation of heavy metal contaminated sites.

The electron transport mechanism of downflow Leersia hexandra Swartz constructed wetland-microbial fuel cell when used to treat Cr(VI) and p-chlorophenol

Constructed wetland-microbial fuel cells are used to treat heavy metal and/or refractory organic wastewater. However, the electron transport mechanism of downflow Leersia hexandra constructed wetland-microbial fuel cells (DLCW-MFCs) is poorly understood when used to treat composite-polluted wastewater containing Cr(VI) and p-chlorophenol (4-CP) (C&P). In this study, metagenomics and in situ electrochemical techniques were used to investigate the electrochemical properties and the electricigens and their dominant gene functions. The DLCW-MFC was used to treat C&P and single-pollutant wastewater containing Cr(VI) (SC) and 4-CP (SP). The results showed that C&P had a higher current response and charge transfer capability and lower solution resistance plus charge transfer resistance. The anode bacteria solution of C&P contained more electron carriers (RF, FMN, FAD, CoQ10, and Cyt c). Metagenomic sequencing indicated that the total relative abundance of the microorganisms associated with electricity production (Desulfovibrio, Pseudomonas, Azospirillum, Nocardia, Microbacterium, Delftia, Geobacter, Acinetobacter, Bacillus, and Clostridium) was the highest in C&P (4.24%). However, Microbacterium was abundant in SP (0.12%), which exerted antagonistic effects on other electricigens. Among the 10 electricigens based on gene annotation, C&P had a higher overall relative abundance of the Unigene gene annotated to the KO pathway and CAZy level B compared with SC and SP, which were 1.31% and 0.582% respectively. Unigene153954 (ccmC), Unigene357497 (coxB), and Unigene1033667 (ubiG) were related to the electron carrier Cyt c, electron transfer, and CoQ biosynthesis, respectively. These were annotated to Desulfovibrio, Delftia, and Pseudomonas, respectively. Unigene161312 (AA1) used phenols and other substrates as electron donors and was annotated to Pseudomonas. Other functional carbohydrate enzyme genes (e.g., GT2, GT4, and GH31) used carbohydrates as donors and were annotated to other electricigens. This study provides a theoretical basis for electron transfer to promote the development of CW-MFCs.

Impact of lead (Pb2+) on the growth and biological activity of Serratia marcescens selected for wastewater treatment and identification of its zntR gene-a metal efflux regulator

Microorganisms isolated from contaminated areas play an important role in bioremediation processes. They promote heavy metal removal from the environment by adsorbing ions onto the cell wall surface, accumulating them inside the cells, or reducing, complexing, or precipitating these substances in the environment. Microorganism-based bioremediation processes can be highly efficient, low-cost and have low environmental impact. Thus, the present study aimed to select Pb²⁺-resistant bacteria and evaluate the growth rate, biological activity, and the presence of genes associated with metal resistance. Serratia marcescens CCMA 1010, that was previously isolated from coffee processing wastewater, was selected since was able to growth in Pb²⁺ concentrations of up to 4.0 mM. The growth rate and generation time did not differ from those of the control (without Pb²⁺), although biological activity decreased in the first hour of exposure to these ions and stabilized after this period. The presence of the zntR, zntA and pbrA genes was analysed, and only zntR was detected. The zntR gene encodes a protein responsible for regulating the production of ZntA, a transmembrane protein that facilitates Pb²⁺ extrusion out of the cell. S. marcescens CCMA 1010 demonstrated a potential for use as bioindicator that has potential to be used in bioremediation processes due to its resistance to high concentrations of Pb²⁺, ability to grow until 24 h of exposure, and possession of a gene that indicates the existence of mechanisms associated with resistance to lead (Pb²⁺).

Lead biosorption efficiency of Levilactobacillus brevis MZ384011 and Levilactobacillus brevis MW362779: A response surface based approach

Lead (Pb) is a substantial contaminant in the environment and a potent toxin for living organisms. Current study describes probiotic characteristics of Pb-biosorbing lactic acid bacteria (LAB), and response surface methodology (RSM) based optimization of physical conditions for maximum Pb biosorption. A total of 18 LAB, isolated from carnivore feces (n = 8) and human breast milk (n = 9), along with one reference strain Lactobacillus acidophilus ATCC4356 were included in the study. Pb biosorption was strain specific. Eight strains, demonstrating ≥ 70 % lead biosorption, were selected for further testing. The lactobacillus-Pb complex was found to be stable and strains had a negative surface charge. The strains displayed good probiotic properties with the survival rate of 71-90 % in simulated gastric environment, 36-69 % in intestinal condition (1.8 % bile salts) and 55-72 % hydrophobicity. On the basis of excellent probiotic ability, Levilactobacillus brevis MZ384011 and Levilactobacillus brevis MW362779 were selected for optimization of physical conditions of Pb biosorption through RSM. Maximum biosorption was observed at pH 6 in 60 min at a cell density of 1 g/L. L. brevis MZ384011 and L. brevis MW362779 are recommended for experimentation on Pb toxicity amelioration and safety evaluation in in-vivo setting.

Recent advancements in cadmium-microbe interactive relations and their application for environmental remediation: a mechanistic overview

The toxic and persistent nature of cadmium (Cd) in the environment has become a matter of concern with its drastic increase in the concentrations over past few decades. Among the various techniques, the microbial remediation has been accepted as an effective decontamination tool for environmental applications, which is sustainable over a period of time. The Cd decontamination potential of the microbes depends on various internal and external factors that play a crucial role in selection of the microbes for application in a particular environment. Thus, it is important to understand the role of these factors for optimal application of the microbes. This study provides an insight into the mechanisms involved between the microbes and the environmental Cd. The study also briefly reviews the mathematical models that have been used to predict the remediation potential of the microbes and the kinetics involved during the process. A critical analysis of the recent advancements in the techniques for use of bacteria, fungi, and algal cells to remove Cd has been also presented in the manuscript.

Improvement of Zn (II) and Cd (II) Biosorption by Priestia megaterium PRJNA526404 Isolated from Agricultural Waste Water

Heavy metals are considered as dangerous pollutants even in relatively low concentrations. Biosorption is an ecofriendly technology that uses microbial biomasses for adsorbing heavy metals from wastewater on their surfaces based on physicochemical pathways. Ten agricultural wastewater samples were collected from different sites in Sohag Governorate, Egypt. One hundred and nineteen zinc and cadmium-resistant bacterial isolates were recovered from the water samples. Interestingly, the isolate R1 was selected as the most resistant to Zn²⁺ and Cd²⁺. This isolate was morphologically and biochemically characterized and identified by sequencing of 16S rRNA gene as Priestia megaterium, and then deposited in the GenBank database under the accession number PRJNA526404. Studying the effects of pH and contact time on the biosorption process revealed that the maximum biosorption was achieved within 50 min at pH 7 and 8 for Zn²⁺ and Cd²⁺, respectively, by the living and lyophelized biomass of Priestia megaterium PRJNA526404. The preliminary characterization of the main chemical groups present on the cell wall, which are responsible for heavy metal biosorption, was performed by Infrared analysis (IR). Kinetics studies revealed that data were fitted towards the models hypothesized by Langmuir and Freundlich isotherm equations. The maximum capacity values (q_max) for biosorption of zinc and cadmium reached by using living and lyophelized biomass were 196.08; 227.27 and 178.57; 212.777 mg/g, respectively, and it was indicated that lyophilization improved efficiency of the biomass to heavy metals compared to living cells. The results indicated that Priestia megaterium PRJNA526404 had good application prospect in cadmium and zinc water remediation.

A fungus (Trametes pubescens) resists cadmium toxicity by rewiring nitrogen metabolism and enhancing energy metabolism

As a primary goal, cadmium (Cd) is a heavy metal pollutant that is readily adsorbed and retained in rice, and it becomes a serious threat to food safety and human health. Fungi have attracted interest for their ability to remove heavy metals from the environment, although the underlying mechanisms of how fungi defend against Cd toxicity are still unclear. In this study, a Cd-resistant fungus Trametes pubescens (T. pubescens) was investigated. Pot experiments of rice seedlings colonized with T. pubescens showed that their coculture could significantly enhance rice seedling growth and reduce Cd accumulation in rice tissues. Furthermore, integrated transcriptomic and metabolomic analyses were used to explore how T. pubescens would reprogram its metabolic network against reactive oxygen species (ROS) caused by Cd toxicity. Based on multi-omic data mining results, we postulated that under Cd stress, T. pubescens was able to upregulate both the mitogen-activated protein kinase (MAPK) and phosphatidylinositol signaling pathways, which enhanced the nitrogen flow from amino acids metabolism through glutaminolysis to α-ketoglutarate (α-KG), one of the entering points of tricarboxylic acid (TCA) cycle within mitochondria; it thus increased the production of energy equivalents, adenosine triphosphate (ATP) and reduced nicotinamide adenine dinucleotide phosphate (NADPH) for T. pubescens to resist oxidative damage. This study can enable a better understanding of the metabolic rewiring of T. pubescens under Cd stress, and it can also provide a promising potential to prevent the rice paddy fields from Cd toxicity and enhance food safety.

Tolerance and Cadmium (Cd) Immobilization by Native Bacteria Isolated in Cocoa Soils with Increased Metal Content

Twelve cadmium native bacteria previously isolated in soils of cocoa farms located in the western Colombian Andes (Santander), and tolerant to 2500 µM CdCl2 (120 mg Cd/L), were chosen in order to test their tolerance and Cd immobilization using liquid culture medium (Nutritive broth) at different concentrations of heavy metals. Furthermore, in the greenhouse experiments, the strains Exiguobacterium sp. (11-4A), Klebsiella variicola sp. (18-4B), and Enterobacter sp. (29-4B) were applied in combined treatments using CCN51 cacao genotype seeds grown in soil with different concentrations of Cd. All bacterial strains’ cell morphologies were deformed in TEM pictures, which also identified six strain interactions with biosorption and four strain capacities for bioaccumulation; FT-IR suggested that the amide, carbonyl, hydroxyl, ethyl, and phosphate groups on the bacteria biomass were the main Cd binding sites. In the pot experiments, the concentration of Cd was distributed throughout the cacao plant, but certain degrees of immobilization of Cd can occur in soil to prevent an increase in this level in roots with the presence of Klebsiella sp.

The potential effectiveness of mixed bacteria-loaded biochar/activated carbon to remediate Cd, Pb co-contaminated soil and improve the performance of pakchoi plants

Cadmium (Cd) and lead (Pb) are toxic heavy metals that cause severe soil pollution and pose health risks to humans. It is urgent to develop feasible strategies for Pb and Cd remediation. In this study, a bacteria consortium (Enterobacter asburiae G3, Enterobacter tabaci I12 and Klebsiella variicola J2 in a 1:3:3 proportion) with optimal Cd, Pb adsorption ability was constructed and immobilized on biochar (BC)/activated carbon (AC) via physisorption and sodium alginate encapsulation. The effects of mixed bacteria-loaded BC/AC on Cd and Pb remediation were investigated. The results indicated that their application reduced the DTPA-extractable Cd, Pb in soil by 22.05%-55.84% and 31.64%-48.13%, respectively. The residual Pb, Cd were increased while the exchangeable fractions were decreased. Soil urease, catalase and phosphatase activities were enhanced and soil bacterial community was improved, indicating a soil quality improvement. Consequently, the biomass of pakchoi plants was significantly increased. Cd and Pb in the shoots of pakchoi plants were decreased by 28.68%-51.01% and 24.18%-52.87%, respectively. Collectively, the bacteria-loaded BC/AC showed superior performance than free bacteria, BC and AC alone. Our study may provide a better understanding of the development of green and sustainable materials for remediation of heavy metal by the combination of BC/AC and functional bacteria.

Joint action of binary mixtures based on parameter k·ECx from concentration-response curves in long-term toxicity assay

A previous acute toxicity study of binary mixtures showed that the combined toxicity can be predicted with the parameter k∙EC_x. To systematically investigate the ability of k∙EC_x to predict the chronic combined toxicity of binary mixtures, the toxicity of six contaminants and five binary mixtures was determined by long-term microplate toxicity analysis (L-MTA) using Aliivibrio fischeri as the test organism. The independent action model (IA) and the relative model deviation ratio (rMDR) were employed to determine the relationship between the Δ(k∙EC_x)% and rMDR_x. The results showed that these two factors conformed to the exponential function in long-term toxicity. Owing to the time-dependence of toxicity, the mixture type of chronic toxicity changes to the relative type of acute toxicity. If the acute toxicity of binary mixtures changes their mode of joint action throughout the concentration range, the chronic toxicity will also change their mode of joint action, and vice versa. This study clarified the change rules of the joint action of binary mixtures in acute and chronic toxicity which can promote research on chronic toxicity of binary mixtures.

Biosorptive Potential of Pseudomonas species RY12 Toward Zinc Heavy Metal in Agriculture Soil Irrigated with Contaminated Waste Water

Industrial waste is mainly responsible for accumulating Zn (II) in the soil, which needs to be removed to avoid its bioaccumulation and hazardous effects on the environment. In a recent study, the potential of the RY12 strain was evaluated as a biosorbent of Zn (II) ions in an aqueous medium. Different microbiological techniques like biochemical, molecular characterization, and 16S rRNA gene sequencing were used for the identification of RY12. The impact of different parameters such as the initial zinc ion concentration, pH, temperature, and the removal of other metals such as manganese, lead, cobalt, silver, copper, mercury, and chromium was also evaluated on the reduction of Zn (II). Fourier Transform Infrared spectroscopy (FTIR) was also carried out to investigate the role of cellular surfaces in the sorption of Zn+2 ions. Both biochemical and phylogenetic analyses established that strain RY12 Pseudomonas sp. capable of reducing Zn+2 up to 89% at 28°C (pH = 6.5; initial Zn+2 concentration = 200 mg/L). The FTIR analysis revealed that the bacterial cell wall's amino, carboxyl, and phosphate groups were involved in the reaction with Zn (II). Our findings suggest that Pseudomonas sp. RY12 is a proficient bacterium for removing zinc from industrial waste and could be a valuable bioremediation agent.

The symbiotic system of sulfate-reducing bacteria and clay-sized fraction of purplish soil strengthens cadmium fixation through iron-bearing minerals

The microbe-clay mineral system is widely known to reduce the fluidity of heavy metals through biomineralization, thus mitigating soil pollution stemming from heavy metals. Here, we investigated the effect of mineral distinction on the solidification of cadmium (Cd) using sulfate-reducing bacteria (SRB) to construct symbiotic systems with purplish soil, clay-sized fraction of purple soil (Clay_-csp), clay particles of amorphous iron (Fe) oxide (Clay_-ox), clay particles removing crystalline Fe oxide (Clay_-CBD), and residues of Clay_-CBD treated by hydrochloric acid (Clay_-HCl). The difference in Cd morphology among purplish soil, Clay_-csp, and Clay_-ox indicated that the fixation of Cd in soil was largely determined by Fe oxides. The content of Cd in Clay_-csp decreased by 66.7% after the removal of amorphous Fe, confirming that clay easily adsorbed infinitive Fe oxides in purple soil. In the system of SRB and Clay_-ox, carbonate-bound Cd (F2) decreased by 14.85% and residual Cd (F5) increased by 14% from the retardation to late decline phase, eventually forming iron-sulfur (Fe-S) compounds. Based on the correlation analyses of Cd and Fe in amorphous-bound state and Fe-manganese (Mn) oxidation state in simulation experiments, it is demonstrated that Fe-Mn oxides control the behavior of Cd in soil clay, and SRB-mediated Fe-bearing minerals promote the transformation of Cd from activated to stable state.

Nickel mine soil is a potential source for soybean plant growth promoting and heavy metal tolerant rhizobia

Mine soil is not only barren but also contaminated by some heavy metals. It is unclear whether some rhizobia survived under extreme conditions in the nickel mine soil. Therefore, this study tries to isolate some effective soybean plant growth promoting and heavy metal resistant rhizobia from nickel mine soil, and to analyze their diversity. Soybean plants were used to trap rhizobia from the nickel mine soil. A total of 21 isolates were preliminarily identified as rhizobia, which were clustered into eight groups at 87% similarity level using BOXA1R-PCR fingerprinting technique. Four out of the eight representative isolates formed nodules on soybean roots with effectively symbiotic nitrogen-fixing and plant growth promoting abilities in the soybean pot experiment. Phylogenetic analysis of 16S rRNA, four housekeeping genes (atpD-recA-glnII-rpoB) and nifH genes assigned the symbiotic isolates YN5, YN8 and YN10 into Ensifer xinjiangense and YN11 into Rhizobium radiobacter, respectively. They also showed different tolerance levels to the heavy metals including cadmium, chromium, copper, nickel, and zinc. It was concluded that there were some plant growth promoting and heavy metal resistant rhizobia with the potential to facilitate phytoremediation and alleviate the effects of heavy metals on soybean cultivation in nickel mine soil, indicating a novel evidence for further exploring more functional microbes from the nickel mine soil.

A Review on Microorganisms in Constructed Wetlands for Typical Pollutant Removal: Species, Function, and Diversity

Constructed wetlands (CWs) have been proven as a reliable alternative to traditional wastewater treatment technologies. Microorganisms in CWs, as an important component, play a key role in processes such as pollutant degradation and nutrient transformation. Therefore, an in-depth analysis of the community structure and diversity of microorganisms, especially for functional microorganisms, in CWs is important to understand its performance patterns and explore optimized strategies. With advances in molecular biotechnology, it is now possible to analyze and study microbial communities and species composition in complex environments. This review performed bibliometric analysis of microbial studies in CWs to evaluate research trends and identify the most studied pollutants. On this basis, the main functional microorganisms of CWs involved in the removal of these pollutants are summarized, and the effects of these pollutants on microbial diversity are investigated. The result showed that the main phylum involved in functional microorganisms in CWs include Proteobacteria, Bacteroidetes, Actinobacteria and Firmicutes. These functional microorganisms can remove pollutants from CWs by catalyzing chemical reactions, biodegradation, biosorption, and supporting plant growth, etc. Regarding microbial alpha diversity, heavy metals and high concentrations of nitrogen and phosphorus significantly reduce microbial richness and diversity, whereas antibiotics can cause large fluctuations in alpha diversity. Overall, this review can provide new ideas and directions for the research of microorganisms in CWs.

Remediation potential of immobilized bacterial strain with biochar as carrier in petroleum hydrocarbon and Ni co-contaminated soil

The remediation of organic pollutant-heavy metal co-contaminated soil is a great challenge. Immobilized microorganism technology (IMT) is a potential approach to remediate co-contaminated soil. In this study, we evaluated the feasibility of IMT for the remediation of petroleum hydrocarbon-heavy metal nickel (Ni) co-contaminated soil. The Ni resistant and hydrocarbon-degrading bacteria strain Citrobacter sp. was added to co-contaminated soil by immobilizing on corncob biochar. The potential performance in biodegradation of petroleum hydrocarbon and changing the mobility and speciation of nickel (Ni) in soil were determined, with consideration of the influences of the soil properties and dehydrogenase activity. The results demonstrated that the degradation rate of petroleum hydrocarbons by immobilized microorganisms group (IM) was 45.52%, significantly higher than that of the free bacteria (30.15%), biochar (25.92%) and blank group (18.47%) (P<0.05). At the same time, IM was more effective in immobilizing Ni in the soil by transforming available Ni to a stable fraction with a maximum residual concentration increasing by 101.50 mg·kg^-1, and the carcinogenic nickel sulfide was not detected after remediation in IM. IM exhibited a higher level of soil dehydrogenase activity (0.3956 μg·mL^-1·h^-1·g^-1) than that of free bacteria (0.2878 μg·mL^-1·h^-1·g^-1). A linear correlation was found between the petroleum pollutants degradation rate and dehydrogenase activity (P<0.05). This study indicates the effectiveness and potential of IMT application in degrading petroleum hydrocarbon and immobilizing heavy metals in co-contaminated soil.

Heavy metal biosorption by Extracellular Polymeric Substances (EPS) recovered from anammox granular sludge

The recovery and conversion of Extracellular Polymeric Substances (EPS) from sewage sludge into bio-based commodities might improve the economics and environmental sustainability of wastewater treatment. This contribution explores the application of EPS from anammox granular waste sludge as biosorbent for the removal of heavy metals, specifically lead, copper, nickel, and zinc. Adsorption capacities equivalent or higher than well-established adsorbent media emerged from single-metal biosorption studies (up to 84.9, 52.8, 21.7 and 7.4 mg/gTS_EPS for Pb²⁺, Cu²⁺, Ni²⁺ and Zn²⁺, respectively). Combining spectroscopic techniques, a mechanistic hypothesis for metal biosorption, based on a combination of electrostatic interaction, ion exchange, complexation, and precipitation, was proposed. The adsorption mechanisms of extracted EPS and non-extracted EPS in the native biomass were indirectly compared by means of single-metal biosorption studies performed with pristine granules (adsorbing up to 103.7, 36.1, 48.2 and 49.8 mg/gTSgranules of Pb²⁺, Cu²⁺, Ni²⁺, and Zn²⁺, respectively). In comparison with pristine anammox granules, EPS showed lower adsorption capacities except for copper and different adsorption pathways as postulated based on the adsorption data interpretation via theoretical models. The multi-metal biosorption tests excluded significant competitions among different heavy metals for the EPS binding sites, thus opening further scenarios for the treatment of complex wastewaters.

Effect of Temperature and Cell Viability on Uranium Biomineralization by the Uranium Mine Isolate Penicillium simplicissimum

The remediation of heavy-metal-contaminated sites represents a serious environmental problem worldwide. Currently, cost- and time-intensive chemical treatments are usually performed. Bioremediation by heavy-metal-tolerant microorganisms is considered a more eco-friendly and comparatively cheap alternative. The fungus Penicillium simplicissimum KS1, isolated from the flooding water of a former uranium (U) mine in Germany, shows promising U bioremediation potential mainly through biomineralization. The adaption of P. simplicissimum KS1 to heavy-metal-contaminated sites is indicated by an increased U removal capacity of up to 550 mg U per g dry biomass, compared to the non-heavy-metal-exposed P. simplicissimum reference strain DSM 62867 (200 mg U per g dry biomass). In addition, the effect of temperature and cell viability of P. simplicissimum KS1 on U biomineralization was investigated. While viable cells at 30°C removed U mainly extracellularly via metabolism-dependent biomineralization, a decrease in temperature to 4°C or use of dead-autoclaved cells at 30°C revealed increased occurrence of passive biosorption and bioaccumulation, as confirmed by scanning transmission electron microscopy. The precipitated U species were assigned to uranyl phosphates with a structure similar to that of autunite, via cryo-time-resolved laser fluorescence spectroscopy. The major involvement of phosphates in U precipitation by P. simplicissimum KS1 was additionally supported by the observation of increased phosphatase activity for viable cells at 30°C. Furthermore, viable cells actively secreted small molecules, most likely phosphorylated amino acids, which interacted with U in the supernatant and were not detected in experiments with dead-autoclaved cells. Our study provides new insights into the influence of temperature and cell viability on U phosphate biomineralization by fungi, and furthermore highlight the potential use of P. simplicissimum KS1 particularly for U bioremediation purposes.

Graphical Abstract

Characterization of cadmium biosorption by inactive biomass of two cadmium-tolerant endophytic bacteria Microbacterium sp. D2-2 and Bacillus sp. C9-3

In this study, two cadmium-tolerant endophytic bacteria (Microbacterium sp. D2-2 and Bacillus sp. C9-3) were employed as biosorbents to remove Cd(II) from aqueous solutions. The influence of initial pH, initial Cd(II) concentration, adsorbent biomass, temperature and contact time on Cd(II) removal were investigated. Results showed that the Langmuir isotherms were found to best fit the equilibrium data, and the maximum biosorption capacities were found to be 222.22 and 163.93 mg/g at a solution pH of 5.0 for Microbacterium sp. D2-2 and Bacillus sp. C9-3, respectively. The biosorption kinetics followed well pseudo-second-order kinetics. Fourier transform infrared spectroscopic analysis suggested that the hydroxyl, carboxyl, carbonyl and amino groups on Microbacterium sp. D2-2 and Bacillus sp. C9-3 biomass were the main binding sites for Cd(II). The results presented in this study showed that Microbacterium sp. D2-2 and Bacillus sp. C9-3 are potential and promising adsorbents for the effective removal of Cd(II) from aqueous solutions.

Restoration of heavy metal-contaminated soil and water through biosorbents: A review of current understanding and future challenges

Heavy metal pollution in soil and water is a potential threat to human health as it renders food quality substandard. Different biosorbents such as microbial and agricultural biomass have been exploited for heavy metal immobilization in soil and sorptive removal in waters. Biosorption is an effective and sustainable method for heavy metal removal in soil and water, but the inherent challenges are to find cheap, selective, robust, and cost-effective bioadsorbents. Microbial and agricultural biomass and their modified forms such as nanocomposites and carbonaceous materials (viz., biochar, nanobiochar, biocarbon), might be useful for sequestration of heavy metals in soil via adsorption, ion exchange, complexation, precipitation, and enzymatic transformation mechanisms. In this review, potential biosorbents and their metal removal capacity in soil and water are discussed. The microbial adsorbents and modified composites of agricultural biomasses show improved performance, stability, reusability, and effectively immobilize heavy metals from soil and water. In the future, researchers may consider the modified composites, encapsulated biosorbents for soil and water remediation.

Rhizosphere Microbial Communities and Heavy Metals

The rhizosphere is a microhabitat where there is an intense chemical dialogue between plants and microorganisms. The two coexist and develop synergistic actions, which can promote plants’ functions and productivity, but also their capacity to respond to stress conditions, including heavy metal (HM) contamination. If HMs are present in soils used for agriculture, there is a risk of metal uptake by edible plants with subsequent bioaccumulation in humans and animals and detrimental consequences for their health. Plant productivity can also be negatively affected. Many bacteria have defensive mechanisms for resisting heavy metals and, through various complex processes, can improve plant response to HM stress. Bacteria-plant synergic interactions in the rhizosphere, as a homeostatic ecosystem response to HM disturbance, are common in soil. However, this is hard to achieve in agroecosystems managed with traditional practices, because concentrating on maximizing crop yield does not make it possible to establish rhizosphere interactions. Improving knowledge of the complex interactions mediated by plant exudates and secondary metabolites can lead to nature-based solutions for plant health in HM contaminated soils. This paper reports the main ecotoxicological effects of HMs and the various compounds (including several secondary metabolites) produced by plant-microorganism holobionts for removing, immobilizing and containing toxic elements.

Zinc-Containing Effluent Treatment Using Shewanella xiamenensis Biofilm Formed on Zeolite

The sorption properties of Shewanella xiamenensis biofilm formed on zeolite (mineral-organic sorbent) as a sorbent have been investigated aiming to determine its suitability for complex zinc-containing effluent treatment. The optimum conditions for metal sorption from synthetic solutions were evaluated by changing the pH, zinc concentration, temperature, and time of sorption. The highest removal of metal ions was attained at pH range 3.0-6.0 within 60-150 min of sorbent-sorbate contact. The results obtained from the equilibrium studies were described using the Langmuir, Freundlich, and Temkin models. Maximum sorption capacity of the sorbent calculated from the Langmuir model changed from 3.4 to 6.5 mg/g. High coefficient of determination values calculated for pseudo-second-order and Elovich models indicate the predominant role of chemisorption in metal removal. Gibbs energy and ∆H° values point at the spontaneous and endothermic character of the sorption. The effect of pH and biosorbent mass on Zn(II) sorption from industrial effluent with an initial Zn(II) concentration of 52.8 mg/L was tested. Maximum removal of zinc ions (85%) was achieved at pH 6.0 by applying a two-step treatment system.

A meta-analysis of metal biosorption by suspended bacteria from three phyla

Biosorption of heavy metals by bacterial biomass has been the subject of significant research interest in last decades due to its efficiency, relatively low cost and minimal negative effects for the surrounding environment. In this meta-analysis, the biosorption efficiencies of different bacterial strains for Cu(II), Cd(II), Zn(II), Cr(III), Mn(II), Pb(II) and Ni(II) were evaluated. Optimum conditions for the biosorption process such as initial metal concentration, temperature, pH, contact time, metal type, biomass dosage and bacterial phyla, were evaluated for each heavy metal. According to the results, the efficiencies of bacterial biomass for removal of heavy metal were as follows: Cd(II) > Cr(III) > Pb(II) > Zn(II) > Cu(II) > Ni(II) > Mn(II). Firmicute phyla showed the highest overall (living and dead) biosorption efficiency for heavy metals. Living biomass of Proteobacteria had the best biosorption performance. Living bacterial biomass was significantly more efficient in biosorption of Cu(II), Zn(II) and Pb(II) than dead biomass. The maximum biosorption efficiency of bacterial strains for Cd(II), Pb(II) and Zn(II) was achieved at pH values between 6 and 7.5. High temperatures (>35 °C) reduced the removal efficiencies for Cu(II) and Zn(II) and increased the efficiencies for Cd(II) and Cr(III) ions. The maximum biosorption efficiency of non-essential heavy metals occurred with short contact times (<2 h). Essential metals such as Zn and Cu were more efficiently removed with long biosorption durations (>24 h). The mean biosorption capacity of bacterial biomass was between 71.26 and 125.88 mg g^-1. No publication bias existed according to Egger's and Begg's test results.

Reducing cadmium bioavailability and accumulation in vegetable by an alkalizing bacterial strain

Cadmium (Cd) contamination in agricultural soils is a widespread environmental problem that can affect food safety and human health. Effective remediation methods are needed to reduce Cd bioavailability in soil and Cd accumulation in food crops. In the present study, we isolated a Cd-resistant and alkalizing bacterium strain XT-4 from a Cd-contaminated soil and evaluated its potential application in Cd bioremediation. Based on its morphological, physiological and biochemical characteristics, together with 16S rRNA gene sequence analysis, strain XT-4 was identified as a member of the Bacillus genus. Strain XT-4 showed a strong ability to increase the pH and decrease Cd solubility in the medium. A greenhouse-based pot experiment with a Cd-contaminated soil was conducted to evaluate the effect of strain XT-4 inoculation on the growth and Cd accumulation of the vegetable Pak choi (Brassica rapa ssp. chinensis). Inoculation increased the rhizosphere pH, decreased CaCl₂-extractable Cd in the soil and decreased Cd concentration in the edible part of Pak choi by 28-40%. The results suggest that inoculation with alkalizing bacterial strain XT-4 represents an effective solution to increase rhizosphere pH and decrease Cd uptake by vegetable crops in Cd-contaminated acid soils.

Enhanced Cd2+ and Zn2+ removal from heavy metal wastewater in constructed wetlands with resistant microorganisms

The bioaugmentation role of microbes is often impeded by heavy metal (HM) ions in constructed wetlands (CWs). To explore the interaction between microbes and HM ions, two identical CWs: an MCW (with resistant microorganisms) and a CCW (as control) were used in this study. Experiments analyzed static adsorption performance in a synthetic HM solution. The removal performance of Cd²⁺ and Zn²⁺ was further investigated in both CWs. The removal efficiencies (REs) of 81.92-99.56% and 74.05-98.79% were achieved for Cd²⁺ and Zn²⁺ in the adsorption study, respectively. Significantly higher REs of Cd²⁺ (99.60%), and Zn²⁺ (94.41%) were achieved in the MCW. The microbial community analysis revealed that the dominant genera were Serratia and Pseudomonas in the MCW. The subcellular analysis further demonstrated that the HMs bioaccumulated mainly in the cytomembrane and cell wall. These results indicate that CW with resistant microorganisms inoculated was an effective strategy for treating HMs wastewater.

Unlocking the potential of plant growth-promoting rhizobacteria on soil health and the sustainability of agricultural systems

The concept of soil health refers to specific soil properties and the ability to support and sustain crop growth and productivity, while maintaining long-term environmental quality. The key components of healthy soil are high populations of organisms that promote plant growth, such as the plant growth promoting rhizobacteria (PGPR). PGPR plays multiple beneficial and ecological roles in the rhizosphere soil. Among the roles of PGPR in agroecosystems are the nutrient cycling and uptake, inhibition of potential phytopathogens growth, stimulation of plant innate immunity, and direct enhancement of plant growth by producing phytohormones or other metabolites. Other important roles of PGPR are their environmental cleanup capacities (soil bioremediation). In this work, we review recent literature concerning the diverse mechanisms of PGPR in maintaining healthy conditions of agricultural soils, thus reducing (or eliminating) the toxic agrochemicals dependence. In conclusion, this review provides comprehensive knowledge on the current PGPR basic mechanisms and applications as biocontrol agents, plant growth stimulators and soil rhizoremediators, with the final goal of having more agroecological practices for sustainable agriculture.

Two plant growth promoting bacterial Bacillus strains possess different mechanisms in adsorption and resistance to cadmium

Microorganisms are promising biosorbents for decontaminating cadmium-polluted soil or water systems, but the underlying remediation mechanisms are still unclear. In this study, the cadmium biosorption mechanisms and capabilities of plant growth-promoting microorganisms (Bacillus megaterium NCT-2 and Bacillus paranthracis NT1) were investigated. Batch biosorption experiments showed that the optimal biosorption conditions for B. megaterium NCT-2 and B. paranthracis NT1 were pH 6.0, a biomass dosage of 1.0 g L^-1, and an initial Cd²⁺ concentration of 10 mg L^-1, and pH 8.0, a biomass dosage of 1.0 g L^-1, and an initial Cd²⁺ concentration of 10 mg L^-1, respectively. The biosorption processes of both biosorbents were well described by the pseudo-second order kinetic model, which indicated that the biosorption of Cd²⁺ was mainly chemisorption. The intracellular accumulation portion of adsorbed Cd²⁺ in B. megaterium NCT-2 was much higher than in B. paranthracis NT1 (43.11% and 3.25%, respectively), which resulted in the lower cadmium tolerance (14 mg L^-1 and 280 mg L^-1, respectively) and higher cadmium removal efficiency (46.79% and 20.45%, respectively) of B. megaterium NCT-2 compared to B. paranthracis NT1. SEM-EDS and FTIR analysis suggested the probable interactions of Cd²⁺ with the biosorbent surface ligands, such as -OH, -NH, -SO₃, CO and -COOH during surface adsorption. Results of qRT-PCR illustrated that the difference in cadmium resistant mechanism and adsorption performance between B. megaterium NCT-2 and B. paranthracis NT1 may be regulated by the genes cadA, zitB, khtT, and bshA and cadA, trkA, czcD, and bshA, respectively. Our results revealed that these two biosorbents have the potential for further use in the development of cadmium remediation technologies and could provide insight into the mechanisms of cadmium biosorption.

A High Manganese-Tolerant Pseudomonas sp. Strain Isolated from Metallurgical Waste Heap Can Be a Tool for Enhancing Manganese Removal from Contaminated Soil

Manganese (Mn) is widely used in industry. However, its extensive applications have generated a great amount of manganese waste, which has become an ecological problem and has led to a decrease in natural resources. The use of microorganisms capable of accumulating Mn ions from contaminated ecosystems offers a potential alternative for the removal and recovery of this metal. The main aim of this work was an investigation of removal potential of Mn from soil by isolated bacterial. For this purpose, eleven bacterial strains were isolated from the soil from metallurgical waste heap in Upper Silesia, Poland. Strain named 2De with the highest Mn removal potential was selected and characterized taking into account its ability for Mn sorption and bioaccumulation from soil and medium containing manganese dioxide. Moreover, the protein profile of 2De strain before and after exposition to Mn was analyzed using SDS/PAGE technique. The 2De strain was identified as a Pseudomonas sp. The results revealed that this strain has an ability to grow at high Mn concentration and possesses an enhanced ability to remove it from the solution enriched with the soil or manganese dioxide via a biosorption mechanism. Moreover, changes in cellular protein expression of the isolated strain were observed. This study demonstrated that autochthonous 2De strain can be an effective tool to remove and recover Mn from contaminated soil.

Analysis of biosorption and biotransformation mechanism of Pseudomonas chengduensis strain MBR under Cd(II) stress from genomic perspective

Microbial treatment of heavy metal-polluted sites is considered an environmentally friendly bioremediation technology with high potential. This study shows that Pseudomonas chengduensis strain MBR, a bacterium that can potentially be applied in the treatment of heavy metal pollution, is most affected by Cd(II) stress at the beginning of its growth. Up to 100% of total Cd(II) adsorption occurs in the first 48 h after treatment of stationary phase cells with Cd(II). A biofilm forms on the cell surface, Cd(II) adsorbs, and is reduced to Cd (0) in the form of nanoscale particles. The genome of strain MBR was sequenced, annotated and analyzed. We identified various genes potentially related to cadmium resistance, transport and metabolism. Analysis of the strain MBR genome is helpful to explore the mechanism of Cd(II) resistance, and can provide new ideas for cadmium pollution control.

Characterization of a high cadmium accumulating soil bacterium, Cupriavidus sp. WS2

Cadmium (Cd) is one of the most harmful heavy-metals, its accumulation in crops can lead to severe ecological and healthy problems. Bioremediation using microbes to remove Cd or reduce the bioavailability of Cd is considered as a promising approach for Cd pollution control. Here, we described the isolation and characterization of a high Cd-accumulating bacterial strain, Cupriavidus sp. WS2, from the heavy-metals contained soil at the Wuhan Iron and Steel Company area. WS2 can survive under the high Cd conditions and immobilize Cd by biosynthesizing intracellular Cd-containing nanoparticle inclusions. In the co-inoculation test WS2 also significantly decreased the accumulation of Cd in rice seedlings. All our results suggested that Cupriavidus sp. WS2 may harbor a great potential for the bioremediation applications of Cd pollution.

Increased biomass and reduced tissue cadmium accumulation in rice via indigenous Citrobacter sp. XT1-2-2 and its mechanisms

Microbial remediation is a promising technique to remediate heavy metals contaminated soils. In this study, the cadmium (Cd)- resistant Citrobacter sp. XT1-2-2, isolated from heavy metals contaminated paddy soils, was investigated to evaluate the effect of this strain on soil Cd speciation, cellular Cd distribution, tissue Cd accumulation and rice biomass. The percentage of Cd²⁺ removal by Citrobacter sp. XT1-2-2 was up to 82.3 ± 2.1% within 240 min in the solution. The average content of soil soluble plus exchangeable and carbonate-bound fractions of Cd decreased, whereas Fe/Mn oxide-bound, organic matter-bound and residual fractions increased with bacteria inoculation. For the paddy soil inoculated with the XT1-2-2 strain, Cd concentrations of roots, culms, leaves and grains were significantly reduced by 24.1%, 46.9%, 41.5% and 66.7%, respectively. In addition, inoculation bacteria significantly increased the biomass of the roots, above-ground tissues and the rice grains. All results indicated that the XT1-2-2 strain had the ability to immobilize soil Cd and decrease Cd accumulation in rice grains. Therefore, the XT1-2-2 strain has potential for application to remediate Cd-contaminated paddy soils. It is possible to exploit a new bacterial-assisted technique for the remediation in Cd-contaminated paddy soils.