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Moreno García CA, Perelman SB, Dynes R, Maxwell TMR, Zhou H, Hickford J. Key Grazing Behaviours of Beef Cattle Identify Specific Genotypes of the Glutamate Metabotropic Receptor 5 Gene (GRM5). Behav Genet 2024; 54:212-229. [PMID: 38225510 PMCID: PMC10861638 DOI: 10.1007/s10519-023-10169-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Accepted: 11/24/2023] [Indexed: 01/17/2024]
Abstract
Genotype-phenotype associations between the bovine genome and grazing behaviours measured over time and across contexts have been reported in the past decade, with these suggesting the potential for genetic control over grazing personalities in beef cattle. From the large array of metrics used to describe grazing personality behaviours (GP-behaviours), it is still unclear which ones are linked to specific genes. Our prior observational study has reported associations and trends towards associations between genotypes of the glutamate metabotropic receptor 5 gene (GRM5) and four GP-behaviours, yet the unbalanced representation of GRM5 genotypes occurring in observational studies may have limited the ability to detect associations. Here, we applied a subsampling technique to create a genotypically-balanced dataset in a quasi-manipulative experiment with free ranging cows grazing in steep and rugged terrain of New Zealand's South Island. Using quadratic discriminant analysis, two combinations of eleven GP-behaviours (and a total of fifteen behaviours) were selected to build an exploration model and an elevation model, respectively. Both models achieved ∼ 86% accuracy in correctly discriminating cows' GRM5 genotypes with the training dataset, and the exploration model achieved 85% correct genotype prediction of cows from a testing dataset. Our study suggests a potential pleiotropic effect, with GRM5 controlling multiple grazing behaviours, and with implications for the grazing of steep and rugged grasslands. The study highlights the importance of grazing behavioural genetics in cattle and the potential use of GRM5 markers to select individuals with desired grazing personalities and built herds that collectively utilize steep and rugged rangelands sustainably.
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Affiliation(s)
- Cristian Anibal Moreno García
- Department of Agricultural Sciences, Faculty of Agriculture and Life Sciences, Lincoln University, Lincoln, Canterbury, New Zealand.
| | - Susana Beatríz Perelman
- Departamento de Métodos Cuantitativos y Sistemas de Informacíon, Institute for Agricultural Plant Physiology and Ecology IFEVA CONICET, Universidad de Buenos Aires, CABA, Buenos Aires, Argentina
| | - Robyn Dynes
- Lincoln Research Centre, AgResearch Limited, Lincoln, Canterbury, New Zealand
| | - Thomas M R Maxwell
- Department of Agricultural Sciences, Faculty of Agriculture and Life Sciences, Lincoln University, Lincoln, Canterbury, New Zealand
| | - Huitong Zhou
- Department of Agricultural Sciences, Faculty of Agriculture and Life Sciences, Lincoln University, Lincoln, Canterbury, New Zealand
| | - Jonathan Hickford
- Department of Agricultural Sciences, Faculty of Agriculture and Life Sciences, Lincoln University, Lincoln, Canterbury, New Zealand
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Hlimi A, El Otmani S, Elame F, Chentouf M, El Halimi R, Chebli Y. Application of Precision Technologies to Characterize Animal Behavior: A Review. Animals (Basel) 2024; 14:416. [PMID: 38338058 PMCID: PMC10854988 DOI: 10.3390/ani14030416] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Revised: 01/24/2024] [Accepted: 01/25/2024] [Indexed: 02/12/2024] Open
Abstract
This study aims to evaluate the state of precision livestock farming (PLF)'s spread, utilization, effectiveness, and evolution over the years. PLF includes a plethora of tools, which can aid in a number of laborious and complex tasks. These tools are often used in the monitoring of different animals, with the objective to increase production and improve animal welfare. The most frequently monitored attributes tend to be behavior, welfare, and social interaction. This study focused on the application of three types of technology: wearable sensors, video observation, and smartphones. For the wearable devices, the focus was on accelerometers and global positioning systems. For the video observation, the study addressed drones and cameras. The animals monitored by these tools were the most common ruminants, which are cattle, sheep, and goats. This review involved 108 articles that were believed to be pertinent. Most of the studied papers were very accurate, for most tools, when utilized appropriate; some showed great benefits and potential.
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Affiliation(s)
- Abdellah Hlimi
- Regional Center of Agricultural Research of Tangier, National Institute of Agricultural Research, Avenue Ennasr, BP 415 Rabat Principale, Rabat 10090, Morocco
- Laboratory of Mathematics and Applications, Faculty of Science and Technology, Abdelmalek Essaâdi University, Tangier 90000, Morocco
| | - Samira El Otmani
- Regional Center of Agricultural Research of Tangier, National Institute of Agricultural Research, Avenue Ennasr, BP 415 Rabat Principale, Rabat 10090, Morocco
| | - Fouad Elame
- Regional Center of Agricultural Research of Agadir, National Institute of Agricultural Research, Avenue Ennasr, BP 415 Rabat Principale, Rabat 10090, Morocco
| | - Mouad Chentouf
- Regional Center of Agricultural Research of Tangier, National Institute of Agricultural Research, Avenue Ennasr, BP 415 Rabat Principale, Rabat 10090, Morocco
| | - Rachid El Halimi
- Laboratory of Mathematics and Applications, Faculty of Science and Technology, Abdelmalek Essaâdi University, Tangier 90000, Morocco
| | - Youssef Chebli
- Regional Center of Agricultural Research of Tangier, National Institute of Agricultural Research, Avenue Ennasr, BP 415 Rabat Principale, Rabat 10090, Morocco
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Mapping Welfare: Location Determining Techniques and Their Potential for Managing Cattle Welfare—A Review. DAIRY 2022. [DOI: 10.3390/dairy3040053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2023] Open
Abstract
Several studies have suggested that precision livestock farming (PLF) is a useful tool for animal welfare management and assessment. Location, posture and movement of an individual are key elements in identifying the animal and recording its behaviour. Currently, multiple technologies are available for automated monitoring of the location of individual animals, ranging from Global Navigation Satellite Systems (GNSS) to ultra-wideband (UWB), RFID, wireless sensor networks (WSN) and even computer vision. These techniques and developments all yield potential to manage and assess animal welfare, but also have their constraints, such as range and accuracy. Combining sensors such as accelerometers with any location determining technique into a sensor fusion system can give more detailed information on the individual cow, achieving an even more reliable and accurate indication of animal welfare. We conclude that location systems are a promising approach to determining animal welfare, especially when applied in conjunction with additional sensors, but additional research focused on the use of technology in animal welfare monitoring is needed.
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Moreno García CA, Zhou H, Altimira D, Dynes R, Gregorini P, Jayathunga S, Maxwell TMR, Hickford J. The glutamate metabotropic receptor 5 (GRM5) gene is associated with beef cattle home range and movement tortuosity. J Anim Sci Biotechnol 2022; 13:111. [PMID: 36104821 PMCID: PMC9476267 DOI: 10.1186/s40104-022-00755-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Accepted: 07/08/2022] [Indexed: 11/27/2022] Open
Abstract
Background The grazing behaviour of herbivores and their grazing personalities might in part be determined genetically, but there are few studies in beef cattle illustrating this. In this study, we investigated for first time the genetic variation within a candidate ‘grazing gene’, the glutamate metabotropic receptor 5 gene (GRM5), and tested associations between variation in that gene and variation in grazing personality behaviours (GP-behaviours) displayed by free-ranging cows during winter grazing in the steep and rugged rangelands of New Zealand. Mature beef cows (n = 303, from 3 to 10 years of age) were tracked with global positioning system (GPS) and, with 5-minutes (min) relocation frequency, various GP-behaviours were calculated. These included horizontal and vertical distances travelled, mean elevation, elevation range, elevation gain, slope, home range and movement tortuosity, variously calculated using daily relocation trajectories with repeated measurements (i.e., 7 to 24 days (d)) and satellite-derived digital elevation models (DEM). The different GP-behaviours were fitted into mixed models to ascertain their associations with variant sequences and genotypes of GRM5. Results We discovered three GRM5 variants (A, B and C) and identified the six possible genotypes in the cattle studied. The mixed models revealed that A was significantly associated with elevation range, home range and movement tortuosity. Similarly, GRM5 genotypes were associated (P < 0.05) to home range and movement tortuosity, while trends suggesting association (P < 0.1) were also revealed for elevation range and horizontal distance travelled. Most GP-behaviour models were improved by correcting for cow age-class as a fixed factor. The analysis of GP-behaviours averaged per cow age-class suggests that grazing personality is fully established as beef cows reached 4 years of age. Home range and movement tortuosity were not only associated with GRM5 variation, but also negatively correlated with each other (r = − 0.27, P < 0.001). Conclusions There seems to be a genetically determined trade-off between home range and movement tortuosity that may be useful in beef cattle breeding programmes aiming to improve the grazing distribution and utilisation of steep and rugged rangelands. Supplementary Information The online version contains supplementary material available at 10.1186/s40104-022-00755-7.
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Chapa J, Lidauer L, Steininger A, Öhlschuster M, Potrusil T, Sigler M, Auer W, Azizzadeh M, Drillich M, Iwersen M. Use of a real-time location system to detect cows in distinct functional areas within a barn. JDS COMMUNICATIONS 2021; 2:217-222. [PMID: 36338440 PMCID: PMC9623617 DOI: 10.3168/jdsc.2020-0050] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/12/2020] [Accepted: 03/25/2021] [Indexed: 12/02/2022]
Abstract
The RTLS achieved high accuracy in locating cows in alleys, feed bunk and cubicles. Location and time spent in important barn areas can be automatically determined and used as indicators of health. The potential of combining RTLS with other sensors technologies was discussed.
Automated sensor-based monitoring of cows has become an important tool in herd management to improve or maintain animal health and welfare. Location systems offer the ability to locate animals within the barn for, for example, artificial insemination. Furthermore, they have the potential to measure the time cows spend in important areas of the barn, which might indicate need for improvement in the management of the herd or individuals. In this study, we tested the sensor-based real-time location system (RTLS) Smartbow (SB, Smartbow GmbH) under field conditions. The objectives of this study were (1) to determine the accuracy of the system to predict the location of the cow and the agreement between visual observations and RTLS observations for the total time spent by cows in relevant areas of the barn and (2) to compare the performance of 2 different algorithms (Alg1 and Alg2) for cow location. The study was conducted on a commercial Austrian dairy farm. In total, 35 lactating cows were video recorded for 3 consecutive days. From these recordings, approximately 1 h was selected randomly each day for every cow (3 d × 35 cows). Simultaneously, location data were collected and classified by the RTLS system as dedicated to the alley, feed bunk, or cubicle on a 1-min resolution. A total of 6,030 paired observations were derived from visual observations (VO) and the RTLS and used for the final data analysis. Substantial agreement of categorical data between VO and SB was obtained by Cohen's kappa for both algorithms (Alg1 = 0.76 and Alg2 = 0.78). Similar results were achieved by both algorithms throughout the study, with a slight improvement for Alg2. The ability of the system to locate the cows in the predefined areas was assessed, and the results from Alg2 showed sensitivity, specificity, and positive predictive value of alley (74.0, 91.2, and 76.9%), feed bunk (93.5, 86.2, and 89.1%), and cubicle (90.5, 83.3, and 95.4%) and an overall accuracy of 87.6%.The correlation coefficient (r) between VO and SB for the total time cows spent (within 1 h) in the predefined areas was good to strong (r = 0.82, 0.98, and 0.92 for alley, feed bunk, and cubicle, respectively). These results show the potential of the system to automatically assess total time spent by cows in important areas of the barn for indoor settings. Future studies should focus on evaluating 24-h periods to assess time budgets and to combine technologies such as accelerometers and location systems to improve the performance of behavior prediction in dairy cows.
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Affiliation(s)
- J.M. Chapa
- FFoQSI GmbH—Austrian Competence Centre for Feed and Food Quality, Safety and Innovation, Technopark 1C, 3430 Tulln, Austria
- Clinical Unit for Herd Health Management in Ruminants, University Clinic for Ruminants, Department for Farm Animals and Veterinary Public Health, University of Veterinary Medicine Vienna, 1210 Vienna, Austria
| | | | | | | | | | - M. Sigler
- Smartbow GmbH, 4675 Weibern, Austria
| | - W. Auer
- Smartbow GmbH, 4675 Weibern, Austria
| | - M. Azizzadeh
- Department of Clinical Sciences, Faculty of Veterinary Medicine, Ferdowsi University of Mashhad, Mashhad, 9177948974, Iran
| | - M. Drillich
- Clinical Unit for Herd Health Management in Ruminants, University Clinic for Ruminants, Department for Farm Animals and Veterinary Public Health, University of Veterinary Medicine Vienna, 1210 Vienna, Austria
| | - M. Iwersen
- Clinical Unit for Herd Health Management in Ruminants, University Clinic for Ruminants, Department for Farm Animals and Veterinary Public Health, University of Veterinary Medicine Vienna, 1210 Vienna, Austria
- Corresponding author
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Chimienti M, Beest FM, Beumer LT, Desforges J, Hansen LH, Stelvig M, Schmidt NM. Quantifying behavior and life‐history events of an Arctic ungulate from year‐long continuous accelerometer data. Ecosphere 2021. [DOI: 10.1002/ecs2.3565] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022] Open
Affiliation(s)
- Marianna Chimienti
- Department of Bioscience Aarhus University Frederiksborgvej 399 Roskilde4000Denmark
| | - Floris M. Beest
- Department of Bioscience Aarhus University Frederiksborgvej 399 Roskilde4000Denmark
- Arctic Research Centre Aarhus University Ny Munkegade 116 Aarhus C8000Denmark
| | - Larissa T. Beumer
- Department of Bioscience Aarhus University Frederiksborgvej 399 Roskilde4000Denmark
- Arctic Research Centre Aarhus University Ny Munkegade 116 Aarhus C8000Denmark
| | - Jean‐Pierre Desforges
- Department of Bioscience Aarhus University Frederiksborgvej 399 Roskilde4000Denmark
- Arctic Research Centre Aarhus University Ny Munkegade 116 Aarhus C8000Denmark
- Natural Resource Sciences McGill University Ste Anne de Bellevue QuebecH9X 3V9Canada
| | - Lars H. Hansen
- Department of Bioscience Aarhus University Frederiksborgvej 399 Roskilde4000Denmark
- Arctic Research Centre Aarhus University Ny Munkegade 116 Aarhus C8000Denmark
| | - Mikkel Stelvig
- Centre for Zoo and Wild Animal Health Copenhagen Zoo Frederiksberg2000Denmark
| | - Niels Martin Schmidt
- Department of Bioscience Aarhus University Frederiksborgvej 399 Roskilde4000Denmark
- Arctic Research Centre Aarhus University Ny Munkegade 116 Aarhus C8000Denmark
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Development and validation of a spatially-explicit agent-based model for space utilization by African savanna elephants (Loxodonta africana) based on determinants of movement. Ecol Modell 2021. [DOI: 10.1016/j.ecolmodel.2021.109499] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Factors Affecting Site Use Preference of Grazing Cattle Studied from 2000 to 2020 through GPS Tracking: A Review. SENSORS 2021; 21:s21082696. [PMID: 33920437 PMCID: PMC8069350 DOI: 10.3390/s21082696] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Revised: 04/02/2021] [Accepted: 04/07/2021] [Indexed: 11/21/2022]
Abstract
Understanding the behaviour of grazing animals at pasture is crucial in order to develop management strategies that will increase the potential productivity of grazing systems and simultaneously decrease the negative impact on the environment. The objective of this review was to summarize and analyse the scientific literature that has addressed the site use preference of grazing cattle using global positioning systems (GPS) collars in the past 21 years (2000–2020) to aid the development of more sustainable grazing livestock systems. The 84 studies identified were undertaken in several regions of the world, in diverse production systems, under different climate conditions and with varied methodologies and animal types. This work presents the information in categories according to the main findings reviewed, covering management, external and animal factors driving animal movement patterns. The results showed that some variables, such as stocking rate, water and shade location, weather conditions and pasture (terrain and vegetation) characteristics, have a significant impact on the behaviour of grazing cattle. Other types of bio-loggers can be deployed in grazing ruminants to gain insights into their metabolism and its relationship with the landscape they utilise. Changing management practices based on these findings could improve the use of grasslands towards more sustainable and productive livestock systems.
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Conners MG, Michelot T, Heywood EI, Orben RA, Phillips RA, Vyssotski AL, Shaffer SA, Thorne LH. Hidden Markov models identify major movement modes in accelerometer and magnetometer data from four albatross species. MOVEMENT ECOLOGY 2021; 9:7. [PMID: 33618773 PMCID: PMC7901071 DOI: 10.1186/s40462-021-00243-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2020] [Accepted: 02/03/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND Inertial measurement units (IMUs) with high-resolution sensors such as accelerometers are now used extensively to study fine-scale behavior in a wide range of marine and terrestrial animals. Robust and practical methods are required for the computationally-demanding analysis of the resulting large datasets, particularly for automating classification routines that construct behavioral time series and time-activity budgets. Magnetometers are used increasingly to study behavior, but it is not clear how these sensors contribute to the accuracy of behavioral classification methods. Development of effective classification methodology is key to understanding energetic and life-history implications of foraging and other behaviors. METHODS We deployed accelerometers and magnetometers on four species of free-ranging albatrosses and evaluated the ability of unsupervised hidden Markov models (HMMs) to identify three major modalities in their behavior: 'flapping flight', 'soaring flight', and 'on-water'. The relative contribution of each sensor to classification accuracy was measured by comparing HMM-inferred states with expert classifications identified from stereotypic patterns observed in sensor data. RESULTS HMMs provided a flexible and easily interpretable means of classifying behavior from sensor data. Model accuracy was high overall (92%), but varied across behavioral states (87.6, 93.1 and 91.7% for 'flapping flight', 'soaring flight' and 'on-water', respectively). Models built on accelerometer data alone were as accurate as those that also included magnetometer data; however, the latter were useful for investigating slow and periodic behaviors such as dynamic soaring at a fine scale. CONCLUSIONS The use of IMUs in behavioral studies produces large data sets, necessitating the development of computationally-efficient methods to automate behavioral classification in order to synthesize and interpret underlying patterns. HMMs provide an accessible and robust framework for analyzing complex IMU datasets and comparing behavioral variation among taxa across habitats, time and space.
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Affiliation(s)
- Melinda G Conners
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, 11794, USA.
| | - Théo Michelot
- Centre for Research into Ecological and Environmental Modelling, University of St Andrews, St Andrews, KY169LZ, UK
| | - Eleanor I Heywood
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, 11794, USA
| | - Rachael A Orben
- Department of Fisheries and Wildlife, Oregon State University, Hatfield Marine Science Center, 2030 SE Marine Science Dr., Newport, OR, 97365, USA
| | - Richard A Phillips
- British Antarctic Survey, Natural Environment Research Council, High Cross, Madingley Road, Cambridge, CB3 0ET, UK
| | - Alexei L Vyssotski
- Institute of Neuroinformatics, University of Zurich and Swiss Federal Institute of Technology (ETH), 8057, Zurich, Switzerland
| | - Scott A Shaffer
- Department of Biological Sciences, San Jose State University, San Jose, CA, 95192-0100, USA
| | - Lesley H Thorne
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, 11794, USA
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Validation of Real-Time Kinematic (RTK) Devices on Sheep to Detect Grazing Movement Leaders and Social Networks in Merino Ewes. SENSORS 2021; 21:s21030924. [PMID: 33573163 PMCID: PMC7866524 DOI: 10.3390/s21030924] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Revised: 01/15/2021] [Accepted: 01/27/2021] [Indexed: 11/17/2022]
Abstract
Understanding social behaviour in livestock groups requires accurate geo-spatial localisation data over time which is difficult to obtain in the field. Automated on-animal devices may provide a solution. This study introduced an Real-Time-Kinematic Global Navigation Satellite System (RTK-GNSS) localisation device (RTK rover) based on an RTK module manufactured by the company u-blox (Thalwil, Switzerland) that was assembled in a box and harnessed to sheep backs. Testing with 7 sheep across 4 days confirmed RTK rover tracking of sheep movement continuously with accuracy of approximately 20 cm. Individual sheep geo-spatial data were used to observe the sheep that first moved during a grazing period (movement leaders) in the one-hectare test paddock as well as construct social networks. Analysis of the optimum location update rate, with a threshold distance of 20 cm or 30 cm, showed that location sampling at a rate of 1 sample per second for 1 min followed by no samples for 4 min or 9 min, detected social networks as accurately as continuous location measurements at 1 sample every 5 s. The RTK rover acquired precise data on social networks in one sheep flock in an outdoor field environment with sampling strategies identified to extend battery life.
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Alawneh J, Barreto M, Bome K, Soust M. Description of Behavioral Patterns Displayed by a Recently Weaned Cohort of Healthy Dairy Calves. Animals (Basel) 2020; 10:ani10122452. [PMID: 33371394 PMCID: PMC7767454 DOI: 10.3390/ani10122452] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Revised: 12/12/2020] [Accepted: 12/17/2020] [Indexed: 11/18/2022] Open
Abstract
Simple Summary Modern technology has allowed researchers to track the movement patterns of cattle with increasing accuracy in order to gain a greater understanding of both overt and subtle activity trends. The aim of this study was to describe and analyze movement patterns displayed by recently weaned and healthy dairy calves. Three movement pattern clusters were identified, and calves in this study were more active in the afternoon and at night. There was a correlation between the rate of movement, linearity ratio, and the distance traveled. However, turning angles do not have any influence on the distance traveled and the rate of movement across the three cluster-type movements. The findings reported in this study could be used to further develop the interpretation of movement and behavior patterns of calves in order to establish an early detection system for poor health and welfare on dairy farms. Abstract Animals display movement patterns that can be used as health indicators. The movement of dairy cattle can be characterized into three distinct cluster types. These are cluster type 1 (resting), cluster type 2 (traveling), and cluster type 3 (searching). This study aimed to analyze the movement patterns of healthy calves and assess the relationship between the variables that constitute the three cluster types. Eleven Holstein calves were fitted with GPS data loggers, which recorded their movement over a two week period during spring. The GPS data loggers captured longitude and latitude coordinates, distance, time and speed. It was found that the calves were most active during the afternoon and at night. Slight inconsistencies from previous studies were found in the cluster movements. Cluster type 2 (traveling) reported the fastest rate of movement, whereas cluster type 1 (resting) reported the slowest. These diverse movement patterns could be used to enhance the assessment of dairy animal health and welfare on farms.
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Affiliation(s)
- John Alawneh
- Good Clinical Practice Research Group (GCPRG), School of Veterinary Science, The University of Queensland, Gatton, QLD 4343, Australia; (M.B.); (M.S.)
- School of Veterinary Science, The University of Queensland, Gatton, QLD 4343, Australia;
- Correspondence: ; Tel.: +64-07-5460-1834
| | - Michelle Barreto
- Good Clinical Practice Research Group (GCPRG), School of Veterinary Science, The University of Queensland, Gatton, QLD 4343, Australia; (M.B.); (M.S.)
- School of Veterinary Science, The University of Queensland, Gatton, QLD 4343, Australia;
| | - Kealeboga Bome
- School of Veterinary Science, The University of Queensland, Gatton, QLD 4343, Australia;
| | - Martin Soust
- Good Clinical Practice Research Group (GCPRG), School of Veterinary Science, The University of Queensland, Gatton, QLD 4343, Australia; (M.B.); (M.S.)
- Terragen Biotech Pty Ltd., Coolum Beach, QLD 4573, Australia
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Xu H, Li S, Lee C, Ni W, Abbott D, Johnson M, Lea JM, Yuan J, Campbell DLM. Analysis of Cattle Social Transitional Behaviour: Attraction and Repulsion. SENSORS (BASEL, SWITZERLAND) 2020; 20:E5340. [PMID: 32961892 PMCID: PMC7570944 DOI: 10.3390/s20185340] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Revised: 09/09/2020] [Accepted: 09/15/2020] [Indexed: 12/14/2022]
Abstract
Understanding social interactions in livestock groups could improve management practices, but this can be difficult and time-consuming using traditional methods of live observations and video recordings. Sensor technologies and machine learning techniques could provide insight not previously possible. In this study, based on the animals' location information acquired by a new cooperative wireless localisation system, unsupervised machine learning approaches were performed to identify the social structure of a small group of cattle yearlings (n=10) and the social behaviour of an individual. The paper first defined the affinity between an animal pair based on the ranks of their distance. Unsupervised clustering algorithms were then performed, including K-means clustering and agglomerative hierarchical clustering. In particular, K-means clustering was applied based on logical and physical distance. By comparing the clustering result based on logical distance and physical distance, the leader animals and the influence of an individual in a herd of cattle were identified, which provides valuable information for studying the behaviour of animal herds. Improvements in device robustness and replication of this work would confirm the practical application of this technology and analysis methodologies.
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Affiliation(s)
- Haocheng Xu
- School of Electrical Engineering and Telecommunications, University of New South Wales, High St, Kensington, NSW 2052, Australia; (H.X.); (J.Y.)
| | - Shenghong Li
- Data61, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Marsfield, NSW 2122, Australia; (W.N.); (D.A.); (M.J.)
| | - Caroline Lee
- Agriculture and Food, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Armidale, NSW 2350, Australia; (C.L.); (J.M.L.); (D.L.M.C.)
| | - Wei Ni
- Data61, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Marsfield, NSW 2122, Australia; (W.N.); (D.A.); (M.J.)
| | - David Abbott
- Data61, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Marsfield, NSW 2122, Australia; (W.N.); (D.A.); (M.J.)
| | - Mark Johnson
- Data61, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Marsfield, NSW 2122, Australia; (W.N.); (D.A.); (M.J.)
| | - Jim M. Lea
- Agriculture and Food, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Armidale, NSW 2350, Australia; (C.L.); (J.M.L.); (D.L.M.C.)
| | - Jinhong Yuan
- School of Electrical Engineering and Telecommunications, University of New South Wales, High St, Kensington, NSW 2052, Australia; (H.X.); (J.Y.)
| | - Dana L. M. Campbell
- Agriculture and Food, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Armidale, NSW 2350, Australia; (C.L.); (J.M.L.); (D.L.M.C.)
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Katzner TE, Arlettaz R. Evaluating Contributions of Recent Tracking-Based Animal Movement Ecology to Conservation Management. Front Ecol Evol 2020. [DOI: 10.3389/fevo.2019.00519] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Rosa CA. An inexpensive and open‐source method to study large terrestrial animal diet and behaviour using time‐lapse video and GPS. Methods Ecol Evol 2019. [DOI: 10.1111/2041-210x.13146] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Carlos A. Rosa
- Department of Ecology and Evolutionary Biology University of California Los Angeles Los Angeles California
- San Diego Zoo Global Institute for Conservation Research Escondido California
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15
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McGranahan DA, Geaumont B, Spiess JW. Assessment of a livestock GPS collar based on an open-source datalogger informs best practices for logging intensity. Ecol Evol 2018; 8:5649-5660. [PMID: 29938081 PMCID: PMC6010917 DOI: 10.1002/ece3.4094] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2018] [Revised: 03/06/2018] [Accepted: 03/08/2018] [Indexed: 11/09/2022] Open
Abstract
Ecologists have used Global Positioning Systems (GPS) to track animals for 30 years. Issues today include logging frequency and precision in estimating space use and travel distances, as well as battery life and cost. We developed a low-cost (~US$125), open-source GPS datalogger based on Arduino. To test the system, we collected positions at 20-s intervals for several 1-week durations from cattle and sheep on rangeland in North Dakota. We tested two questions of broad interest to ecologists who use GPS collars to track animal movements: (1) How closely do collared animals cluster in their herd? (2) How well do different logging patterns estimate patch occupancy and total daily distance traveled? Tested logging patterns included regular logging (one position every 5 or 10 min), and burst logging (positions recorded at 20-s intervals for 5 or 10 min per hour followed by a sleep period). Collared sheep within the same pasture spent 75% of daytime periods within 51 m of each other (mean = 42 m); collared cattle were within 111 m (mean = 76 m). In our comparison of how well different logging patterns estimate space use versus constant logging, the proportion of positions recorded in 1- and 16-ha patches differed by 2%-3% for burst logging and 1% for regular logging. Although all logging patterns underestimated total daily distance traveled, underestimations were corrected by multiplying estimations by regression coefficients estimated by maximum likelihood. Burst logging can extend battery life by a factor of 7. We conclude that a minimum of two collars programmed with burst logging robustly estimate patch use and spatial distribution of grazing livestock herds. Research questions that require accurately estimating travel of individual animals, however, are probably best addressed with regular logging intervals and will thus have greater battery demands than spatial occupancy questions across all GPS datalogger systems.
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Affiliation(s)
| | | | - Jonathan W. Spiess
- School of Natural Resource SciencesNorth Dakota State UniversityFargoNorth Dakota
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16
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Deriving Animal Movement Behaviors Using Movement Parameters Extracted from Location Data. ISPRS INTERNATIONAL JOURNAL OF GEO-INFORMATION 2018. [DOI: 10.3390/ijgi7020078] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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17
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Lin S, DeVisser MH, Messina JP. An agent-based model to simulate tsetse fly distribution and control techniques: a case study in Nguruman, Kenya. Ecol Modell 2015; 314:80-89. [PMID: 26309347 DOI: 10.1016/j.ecolmodel.2015.07.015] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
BACKGROUND African trypanosomiasis, also known as "sleeping sickness" in humans and "nagana" in livestock is an important vector-borne disease in Sub-Saharan Africa. Control of trypanosomiasis has focused on eliminating the vector, the tsetse fly (Glossina, spp.). Effective tsetse fly control planning requires models to predict tsetse population and distribution changes over time and space. Traditional planning models have used statistical tools to predict tsetse distributions and have been hindered by limited field survey data. METHODOLOGY/RESULTS We developed an Agent-Based Model (ABM) to provide timing and location information for tsetse fly control without presence/absence training data. The model is driven by daily remotely-sensed environment data. The model provides a flexible tool linking environmental changes with individual biology to analyze tsetse control methods such as aerial insecticide spraying, wild animal control, releasing irradiated sterile tsetse males, and land use and cover modification. SIGNIFICANCE This is a bottom-up process-based model with freely available data as inputs that can be easily transferred to a new area. The tsetse population simulation more closely approximates real conditions than those using traditional statistical models making it a useful tool in tsetse fly control planning.
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Affiliation(s)
- Shengpan Lin
- Department of Zoology, Center for Global Change and Earth Observations, Michigan State University, East Lansing, Michigan, United States of America
| | - Mark H DeVisser
- Department of Geography, Center for Global Change and Earth Observations, Michigan State University, East Lansing, Michigan, United States of America
| | - Joseph P Messina
- Department of Geography, Center for Global Change and Earth Observations, Michigan State University, East Lansing, Michigan, United States of America
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18
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Deriving Animal Behaviour from High-Frequency GPS: Tracking Cows in Open and Forested Habitat. PLoS One 2015; 10:e0129030. [PMID: 26107643 PMCID: PMC4479590 DOI: 10.1371/journal.pone.0129030] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2014] [Accepted: 05/04/2015] [Indexed: 11/19/2022] Open
Abstract
The increasing spatiotemporal accuracy of Global Navigation Satellite Systems (GNSS) tracking systems opens the possibility to infer animal behaviour from tracking data. We studied the relationship between high-frequency GNSS data and behaviour, aimed at developing an easily interpretable classification method to infer behaviour from location data. Behavioural observations were carried out during tracking of cows (Bos Taurus) fitted with high-frequency GPS (Global Positioning System) receivers. Data were obtained in an open field and forested area, and movement metrics were calculated for 1 min, 12 s and 2 s intervals. We observed four behaviour types (Foraging, Lying, Standing and Walking). We subsequently used Classification and Regression Trees to classify the simultaneously obtained GPS data as these behaviour types, based on distances and turning angles between fixes. GPS data with a 1 min interval from the open field was classified correctly for more than 70% of the samples. Data from the 12 s and 2 s interval could not be classified successfully, emphasizing that the interval should be long enough for the behaviour to be defined by its characteristic movement metrics. Data obtained in the forested area were classified with a lower accuracy (57%) than the data from the open field, due to a larger positional error of GPS locations and differences in behavioural performance influenced by the habitat type. This demonstrates the importance of understanding the relationship between behaviour and movement metrics, derived from GNSS fixes at different frequencies and in different habitats, in order to successfully infer behaviour. When spatially accurate location data can be obtained, behaviour can be inferred from high-frequency GNSS fixes by calculating simple movement metrics and using easily interpretable decision trees. This allows for the combined study of animal behaviour and habitat use based on location data, and might make it possible to detect deviations in behaviour at the individual level.
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Demšar U, Buchin K, Cagnacci F, Safi K, Speckmann B, Van de Weghe N, Weiskopf D, Weibel R. Analysis and visualisation of movement: an interdisciplinary review. MOVEMENT ECOLOGY 2015; 3:5. [PMID: 25874114 PMCID: PMC4395897 DOI: 10.1186/s40462-015-0032-y] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2014] [Accepted: 02/02/2015] [Indexed: 05/23/2023]
Abstract
The processes that cause and influence movement are one of the main points of enquiry in movement ecology. However, ecology is not the only discipline interested in movement: a number of information sciences are specialising in analysis and visualisation of movement data. The recent explosion in availability and complexity of movement data has resulted in a call in ecology for new appropriate methods that would be able to take full advantage of the increasingly complex and growing data volume. One way in which this could be done is to form interdisciplinary collaborations between ecologists and experts from information sciences that analyse movement. In this paper we present an overview of new movement analysis and visualisation methodologies resulting from such an interdisciplinary research network: the European COST Action "MOVE - Knowledge Discovery from Moving Objects" (http://www.move-cost.info). This international network evolved over four years and brought together some 140 researchers from different disciplines: those that collect movement data (out of which the movement ecology was the largest represented group) and those that specialise in developing methods for analysis and visualisation of such data (represented in MOVE by computational geometry, geographic information science, visualisation and visual analytics). We present MOVE achievements and at the same time put them in ecological context by exploring relevant ecological themes to which MOVE studies do or potentially could contribute.
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Affiliation(s)
- Urška Demšar
- />School of Geography & Geosciences, University of St Andrews, Irvine Building, North Street, St Andrews, Fife, Scotland KY16 9AL UK
| | - Kevin Buchin
- />Department of Mathematics and Computer Science, Technical University Eindhoven, Eindhoven, The Netherlands
| | - Francesca Cagnacci
- />Biodiversity and Molecular Ecology Department, IASMA Research and Innovation Centre, Fondazione Edmund Mach, Trento, Italy
| | - Kamran Safi
- />Department of Migration and Immuno-ecology, Max Planck Institute for Ornithology, Munich, Germany
- />Department of Biology, University of Konstanz, Konstanz, Germany
| | - Bettina Speckmann
- />Department of Mathematics and Computer Science, Technical University Eindhoven, Eindhoven, The Netherlands
| | | | - Daniel Weiskopf
- />Visualization Research Center, University of Stuttgart, Stuttgart, Germany
| | - Robert Weibel
- />Department of Geography, University of Zurich, Zurich, Switzerland
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20
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Liu T, Green AR, Rodríguez LF, Ramirez BC, Shike DW. Effects of number of animals monitored on representations of cattle group movement characteristics and spatial occupancy. PLoS One 2015; 10:e0113117. [PMID: 25647571 PMCID: PMC4315582 DOI: 10.1371/journal.pone.0113117] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2014] [Accepted: 10/23/2014] [Indexed: 11/19/2022] Open
Abstract
The number of animals required to represent the collective characteristics of a group remains a concern in animal movement monitoring with GPS. Monitoring a subset of animals from a group instead of all animals can reduce costs and labor; however, incomplete data may cause information losses and inaccuracy in subsequent data analyses. In cattle studies, little work has been conducted to determine the number of cattle within a group needed to be instrumented considering subsequent analyses. Two different groups of cattle (a mixed group of 24 beef cows and heifers, and another group of 8 beef cows) were monitored with GPS collars at 4 min intervals on intensively managed pastures and corn residue fields in 2011. The effects of subset group size on cattle movement characterization and spatial occupancy analysis were evaluated by comparing the results between subset groups and the entire group for a variety of summarization parameters. As expected, more animals yield better results for all parameters. Results show the average group travel speed and daily travel distances are overestimated as subset group size decreases, while the average group radius is underestimated. Accuracy of group centroid locations and group radii are improved linearly as subset group size increases. A kernel density estimation was performed to quantify the spatial occupancy by cattle via GPS location data. Results show animals among the group had high similarity of spatial occupancy. Decisions regarding choosing an appropriate subset group size for monitoring depend on the specific use of data for subsequent analysis: a small subset group may be adequate for identifying areas visited by cattle; larger subset group size (e.g. subset group containing more than 75% of animals) is recommended to achieve better accuracy of group movement characteristics and spatial occupancy for the use of correlating cattle locations with other environmental factors.
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Affiliation(s)
- Tong Liu
- Department of Agricultural and Biological Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America
- * E-mail:
| | - Angela R. Green
- Department of Agricultural and Biological Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America
| | - Luis F. Rodríguez
- Department of Agricultural and Biological Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America
| | - Brett C. Ramirez
- Department of Agricultural and Biological Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America
| | - Daniel W. Shike
- Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America
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Asher G, Wall A, O’Neill K, Littlejohn R, Bryant A, Cox N. The use of GPS data to identify calving behaviour of farmed red deer hinds: Proof of concept for intensively managed hinds. Appl Anim Behav Sci 2014. [DOI: 10.1016/j.applanim.2014.02.010] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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22
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Yuwono M, Su SW, Guo Y, Moulton BD, Nguyen HT. Unsupervised nonparametric method for gait analysis using a waist-worn inertial sensor. Appl Soft Comput 2014. [DOI: 10.1016/j.asoc.2013.07.027] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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23
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Opportunities for telemetry techniques in studies on the nutritional ecology of free-ranging domesticated ruminants. Animal 2013; 7 Suppl 1:123-31. [DOI: 10.1017/s1751731112000870] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022] Open
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Gao L, Campbell HA, Bidder OR, Hunter J. A Web-based semantic tagging and activity recognition system for species' accelerometry data. ECOL INFORM 2013. [DOI: 10.1016/j.ecoinf.2012.09.003] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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25
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Anderson DM, Estell RE, Cibils AF. Spatiotemporal Cattle Data—A Plea for Protocol Standardization. ACTA ACUST UNITED AC 2013. [DOI: 10.4236/pos.2013.41012] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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26
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Group-based Motion Detection for Energy-Efficient Localisation. JOURNAL OF SENSOR AND ACTUATOR NETWORKS 2012. [DOI: 10.3390/jsan1030183] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Long-term outdoor localization remains challenging due to the high energy profiles of GPS modules. Duty cycling the GPS module combined with inertial sensors can improve energy consumption. However, inertial sensors that are kept active all the time can also drain mobile node batteries. This paper proposes duty cycling strategies for inertial sensors to maintain a target position accuracy and node lifetime. We present a method for duty cycling motion sensors according to features of movement events, and evaluate its energy and accuracy profile for an empirical data trace of cattle movement. We further introduce the concept of group-based duty cycling, where nodes that cluster together can share the burden of motion detection to reduce their duty cycles. Our evaluation shows that both variants of motion sensor duty cycling yield up to 78% improvement in overall node power consumption, and that the group-based method yields an additional 20% power reduction during periods of low mobility.
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Anderson DM, Winters C, Estell RE, Fredrickson EL, Doniec M, Detweiler C, Rus D, James D, Nolen B. Characterising the spatial and temporal activities of free-ranging cows from GPS data. RANGELAND JOURNAL 2012. [DOI: 10.1071/rj11062] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Electronic tracking provides a unique way to document behaviour by cows on a continuous basis. Over 2 years 17 beef cows with calves were fitted with global positioning system (GPS) devices programmed to record uncorrected GPS locations at 1-s intervals in a semi-desert rangeland. Each cow was periodically observed during daylight hours and foraging, walking and stationary (standing/lying) activity times were recorded across days and individual cows to calculate a mean travel rate for each activity. Data without observers present were collected immediately preceding and following the abrupt weaning of calves at between 223 and 234 days of age to evaluate the potential of classifying various travel rates into foraging, walking and stationary activity. The three activities were further characterised within a 24-h period based on the sun’s angle with respect to the horizon. Only data from cows whose equipment acquired ≥ 90% of the potential GPS positional data among consecutive days were analysed. Due to problems with the equipment, data from two cows in 2009 and two cows in 2011 met these criteria. The interval evaluated consisted of four 24-h periods before abrupt weaning and seven 24-h periods following weaning. Results suggested that uncorrected 1-s positional GPS data are satisfactory to classify the behaviour by free-ranging beef cows into foraging, walking and stationary activities. Furthermore, abrupt weaning caused cows to change their spatial and temporal behaviour across and within days. Overall, travel by cows increased post-weaning with subtle within-day behavioural changes. Further research will be required to fully understand the biological importance of spatio-temporal behaviour to optimise cattle and landscape management goals.
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Swain DL, Friend MA, Bishop-Hurley GJ, Handcock RN, Wark T. Tracking livestock using global positioning systems - are we still lost? ANIMAL PRODUCTION SCIENCE 2011. [DOI: 10.1071/an10255] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Since the late 1980s, satellite-based global positioning systems (GPS) have provided unique and novel data that have been used to track animal movement. Tracking animals with GPS can provide useful information, but the cost of the technology often limits experimental replication. Limitations on the number of devices available to monitor the behaviour of animals, in combination with technical constraints, can weaken the statistical power of experiments and create significant experimental design challenges. The present paper provides a review and synthesis of using GPS for livestock-based studies and suggests some future research directions. Wildlife ecologists working in extensive landscapes have pioneered the use of GPS-based devices for tracking animals. Wildlife researchers have focussed efforts on quantifying and addressing issues associated with technology limitations, including spatial accuracy, rate of data collection, battery life and environmental factors causing loss of data. It is therefore not surprising that there has been a significant number of methodological papers published in the literature that have considered technical developments of GPS-based animal tracking. Livestock scientists have used GPS data to inform them about behavioural differences in free-grazing experiments. With a shift in focus from the environment to the animal comes the challenge of ensuring independence of the experimental unit. Social facilitation challenges independence of the individual in a group. The use of spatial modelling methods to process GPS data provides an opportunity to determine the degree of independence of data collected from an individual animal within behavioural-based studies. By using location and movement information derived from GPS data, researchers have been able to determine the environmental impact of grazing animals as well as assessing animal responses to management activities or environmental perturbations. Combining satellite-derived remote-sensing data with GPS-derived landscape preference indices provides a further opportunity to identify landscape avoidance and selection behaviours. As spatial livestock monitoring tools become more widely used, there will be a greater need to ensure the data and associated processing methods are able to answer a broader range of questions. Experimental design and analytical techniques need to be given more attention if GPS technology is to provide answers to questions associated with free-grazing animals.
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Thomas DT, Wilmot MG, Kelly RW, Revell DK. Adaptation behaviour of local and rangeland cattle relocated to a temperate agricultural pasture. ANIMAL PRODUCTION SCIENCE 2011. [DOI: 10.1071/an11044] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Relocating cattle from rangeland properties to agricultural pastures in southern Western Australia allows producers to improve year-round continuity of feed supply in their beef cattle businesses, and can reduce substantially the time taken to grow animals to meet market specifications. In this study the behaviour and growth of two groups of young cattle that were sourced from different locations was evaluated after they were transferred to a new extensive grazing system. In Experiment 1, 122 Limousin-cross heifers that were raised in the agricultural region of Western Australia (AR cattle) were transferred to the experimental site from a neighbouring property (~10 km away). In Experiment 2, 95 Brahman-cross heifers that were raised in the rangelands of Western Australia (RR cattle) were transferred to the experimental site. Animal growth and behaviour were analysed across time and differences in the time-course of behavioural changes between the groups were compared. Rate of liveweight gain in the AR cattle remained consistent (~1.2 kg/day) during the experiment. There was an increase in horizontal (16%; P < 0.001) and vertical (12%; P = 0.002) head movement in AR cattle over the first several weeks after relocation, indicative of increased grazing activity, but there was little change in other behaviours over the duration of the experiment. In contrast, the RR cattle had reduced growth during the first 4 weeks after relocation (P < 0.001). From weeks 2–4 weight gain in RR cattle was 0.31 kg/day, approximately one-quarter of their average daily gain attained 4 weeks later. During the first 6 weeks, RR cattle showed behavioural changes indicative of adaptation, including a 61% increase in horizontal head movements, suggesting more grazing activity. The paddock area utilised daily by RR cattle was 32% higher in week 6 compared with week 1, and during daylight hours (0600–1900 hours) they began to travel more (23%) and spent more time active (16%). We conclude that rangeland-raised Bos indicus heifers take from 4 to 6 weeks to adapt from their previous large paddocks/natural plant environment to a new temperate agricultural environment. Our results suggest that the cause of lost productivity in rangeland cattle when they are relocated to a temperate pasture is at least in part due to initial lower grazing activity as they become familiar with the new environment.
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Trotter MG, Lamb DW, Hinch GN, Guppy CN. Global navigation satellite system livestock tracking: system development and data interpretation. ANIMAL PRODUCTION SCIENCE 2010. [DOI: 10.1071/an09203] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The use of global satellite navigation system tracking as a research tool for monitoring livestock activity is increasing. Commercial systems are being developed for the livestock industry. This paper reports on the development of a low-cost, store-on-board Global Positioning System collar suitable for large-scale deployment in livestock herds. A robust collar design that avoids the necessity of external cables has been designed and was tested on beef cattle in western New South Wales. Configured for alternating wake and sleep modes to conserve battery life, the collars obtained a positional fix on 99.9% of attempts. Numerous alternatives for presenting extracted data, based on average diurnal activity, mean daily velocity, Livestock Residence Index and dry sheep equivalent maps are introduced and discussed.
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31
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Etherington TR, Pietravalle S, Cowan DP. Visualising uncertainty in radio-telemetry wildlife-tracking data to aid better study design. WILDLIFE RESEARCH 2010. [DOI: 10.1071/wr09151] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Context. Animal movements recorded by radio-telemetry produce a series of spatio-temporal point-location estimates that sample an animal’s continuous track. However, uncertainty in the point locations themselves, and uncertainty of how the animal moved between locations, could be large enough to render data unsuitable for some purposes. Aims. Our objective was to develop a method that would visualise these uncertainties by calculating the maximum range of possible movements around the sampled point locations, given different probabilities of point-location error and animal-movement speed. By visualising the uncertainties, we hope to aid better study design. Methods. To quantify the probability of different levels of uncertainty, we use a probability density function (PDF) of point-location error and movement speed. By choosing a cut-off probability on each PDF, ellipses can be drawn for consecutive pairs of point-location estimates, which when combined show the maximum range of possible movements at those specific cut-off probabilities of location error and movement speed. We demonstrate how to establish the PDFs and apply the methodology by using an example of grizzly bear (Ursus arctos) radio-telemetry data. Key results. By establishing a range of probability cut-offs within each PDF, it is possible to visualise the area within which a grizzly bear could have moved under different combinations of those cut-offs. Conclusions. Comparison of the potential maximum range of possible movements, under different combinations of probability cut-offs, enables the relative importance of each source of uncertainty to be evaluated. Acquiring data from intense sampling would be particularly useful in providing robust information on likely movement speeds. Implications. This approach could be used during study design and testing to prioritise efforts towards reducing uncertainty in the point-location estimates, and uncertainty of where the animal moved between locations to ensure the radio-telemetry method used is appropriate for the study’s objectives.
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