Bottom-up versus top-down effects on ciliate community composition in four eutrophic lakes (China)

Quality matters: Response of bacteria and ciliates to different allochthonous dissolved organic matter sources as a pulsed disturbance in shallow lakes

Shallow lake ecosystems are particularly prone to disturbances such as pulsed dissolved organic matter (allochthonous-DOM; hereafter allo-DOM) loadings from catchments. However, the effects of allo-DOM with contrasting quality (in addition to quantity) on the planktonic communities of microbial loop are poorly understood. To determine the impact of different qualities of pulsed allo-DOM disturbance on the coupling between bacteria and ciliates, we conducted a mesocosm experiment with two different allo-DOM sources added to mesocosms in a single-pulse disturbance event: Alder tree leaf extract, a more labile (L) source and HuminFeed® (HF), a more recalcitrant source. Allo-DOM sources were used as separate treatments and in combination (HFL) relative to the control without allo-DOM additions (C). Our results indicate that the quality of allo-DOM was a major regulator of planktonic microbial community biomass and/or composition through which both bottom-up and top-down forces were involved. Bacteria biomass showed significant nonlinear responses in L and HFL with initial increases followed by decreases to pre-pulse conditions. Ciliate biomass was significantly higher in L compared to all other treatments. In terms of composition, bacterivore ciliate abundance was significantly higher in both L and HFL treatments, mainly driven by the bacterial biomass increase in the same treatments. GAMM models showed negative interaction between metazoan zooplankton biomass and ciliates, but only in the L treatment, indicating top-down control on ciliates. Ecosystem stability analyses revealed overperformance, high resilience and full recovery of bacteria in the HFL and L treatments, while ciliates showed significant shift in compositional stability in HFL and L with incomplete taxonomic recovery. Our study highlights the importance of allo-DOM quality shaping the response within the microbial loop not only through triggering different scenarios in biomass, but also the community composition, stability, and species interactions (top-down and bottom-up) in bacteria and plankton.

Planktonic ciliate community driven by environmental variables and cyanobacterial blooms: A 9-year study in two subtropical reservoirs

It is well-established that environmental variability and cyanobacterial blooms have major effects on the assembly and functioning of bacterial communities in both marine and freshwater habitats. It remains unclear, however, how the ciliate community responds to such changes over the long-term, particularly in subtropical lake and reservoir ecosystems. We analysed 9-year planktonic ciliate data series from the surface water of two subtropical reservoirs to elucidate the role of cyanobacterial bloom and environmental variabilities on the ciliate temporal dynamics. We identified five distinct periods of cyanobacterial succession in both reservoirs. Using multiple time-scale analyses, we found that the interannual variability of ciliate communities was more strongly related to cyanobacterial blooms than to other environmental variables or to seasonality. Moreover, the percentage of species turnover across cyanobacterial bloom and non-bloom periods increased significantly with time over the 9-year period. Phylogenetic analyses further indicated that 84 %-86 % of ciliate community turnover was governed by stochastic dispersal limitation or undominated processes, suggesting that the ciliate communities in subtropical reservoirs were mainly controlled by neutral processes. However, short-term blooms increased the selection pressure and drove 30 %-53 % of the ciliate community turnover. We found that the ciliate community composition was influenced by environmental conditions with nutrients, cyanobacterial biomass and microzooplankton having direct and/or indirect significant effects on the ciliate taxonomic or functional community dynamics. Our results provide new insights into the long-term temporal dynamics of planktonic ciliate communities under cyanobacterial bloom disturbance.

eDNA revealed in situ microbial community changes in response to Trapa japonica in Lake Qionghai and Lake Erhai, southwestern China

Trapa japonica was observed to have inhibiting effects and could be used as a potential environment-friendly control strategy for cyanobacterial blooms in freshwater. However, the changes and effecting mechanisms in eukaryotic and prokaryotic communities by T. japonica are not yet clear. In this study, the effects of T. japonica on microbial communities were assessed in Lake Qionghai and Lake Erhai by 18S rRNA and 16S rRNA amplicon sequencing, respectively. The results showed that T. japonica can improve biodiversity and change the microbial community structures to varying degrees in both lakes. The alpha diversity indexes of microbial communities (e.g., Shannon, Sobs, Ace and Chao 1) were higher in the water inhabited by T. japonica (TJ group) than the water uninhabited by T. japonica (control) (P < 0.05). The PCoA results suggested that the microbial community compositions differed between the two groups (PERMANOVA P = 0.001). In Lake Qionghai, the relative abundances of dominant taxa and nutrients level showed little differences between the two groups. These may result from the homogenous water condition in Lake Qionghai. While the genera Cyanobium_PCC-6307, the majority of Cyanobacteria, decreased significantly in TJ group than control according to 16S rRNA gene sequencing. In Lake Erhai, environmental variables were distinctly affected by T. japonica, which was found to drive Cryptophyceae to become the main taxa through taxonomic analysis of 18S rRNA. Based on 16S rRNA gene sequencing, T. japonica reduced the relative abundance of Cyanobacteria, such as Planktothrix_NIVA-CYA_15 and Cyanobium_PCC-6307, by enriching cyanobactericidal bacteria and growth-inhibiting bacteria (e.g., Limnohabitans and Flavobacterium) and changing environmental parameters. Our results revealed that T. japonica acts in shaping microbial communities in lakes on the community level, shedding new lights on eutrophication mitigation, one of the most serious global ecological problems we are facing.

Functionally similar species of ciliates have similar dynamics: A biennial survey study in a large eutrophic lake

The spatial and temporal planktonic ciliate community structure of a large shallow eutrophic lake was described in detail based on a monthly monitoring campaign over 2 years using the quantitative protargol stain approach. We found that there was a large variety and low constancy of ciliate plankton and a clear advantage of several small species. Balanion planctonicum, Rimostrombidium brachykinetum, and Urotricha farcta contributed 19.7%, 13.4%, and 10.7% to the total abundance, respectively. The ciliate community was significantly varied in different lake regions of different eutrophication levels, and the distribution of some of the main species, especially prostomatids and scuticociliatids, might be closely related to the nutrient level of the lake regions. The seasonal dynamics of ciliate taxa with similar functional feeding habits across regions at different trophic levels are more convergent than those of species with very different functions, and the top-down effect (cladocerans, rotifers), nutrition, and water temperature were the key factors shaping ciliate community structure. The results of this study accentuate the important effects of species functional diversity on community differences and may improve our knowledge of ciliate diversity and functional ecology in shallow eutrophic lakes.

Progress in studies on the diversity and distribution of planktonic ciliates (Protista, Ciliophora) in the South China Sea

As an important component of microzooplankton, ciliates play a key role in matter cycling and energy flow in marine planktonic ecosystems. Studies of planktonic ciliate have been extensive in the South China Sea (SCS) over the last 20 years. Here, we summarize the recent progress on the diversity and distribution of this group in the SCS. This includes that in: (1) the waters covering the intertidal zone of the northern SCS, most studies have focused on taxonomy, with 71 species collected, identified, and described (with ~ 40% new species); (2) neritic waters distribution patterns have been examined at a regional scale, with ciliates displaying significant spatial variations and seasonal dynamics; (3) in oceanic waters, there has been a focus on ciliate distribution in north, centre, and south regions, where mesoscale physical processes play roles in controlling distributions, and noticeable vertical variations occur. More generally, some studies examine the influences of environment variables on ciliates, and indicate that chlorophyll a concentration is commonly positively correlated with ciliates abundance. In addition, some significant findings are summarized, the limitations of past studies are considered, and recommendations are made for future work on planktonic ciliates in SCS.

Relationship between the Main Communities and Environments of an Urban River and Reservoir: Considering Integrated Structural and Functional Assessments of Ecosystems

Rivers and reservoirs in urban areas have been associated with environmental quality problems because of the discharge of domestic waste into water bodies. However, the key effects and the extent to which environmental factors can influence the integrated structure and function of urban river ecosystems remain largely unknown. Here, a relationship model involving the species composition of the community and the various environmental factors related to the water and sediment was developed in the dry season (N) and the flood season (F) in both the urban Jiaomen River (JR) and the Baihuitian Reservoir (BR) of Guangzhou City. Canonical correspondence analysis was used to determine the spatiotemporal drivers of the phytoplankton, zooplankton and macrobenthic communities in the river and reservoir systems. The combination of the thermodynamic-oriented ecological indicators and the biodiversity measures reflected the integrated structure and function of the ecosystems. Overall, the plankton community composition was found to be largely determined by the nutrient concentrations and oxygen index, and the development of the macrobenthic communities was mainly restricted by organic matter and heavy metals. Based on the results of the integrated assessment, the structure and function of the JR ecosystem were superior to that of the BR, and the F period displayed healthier results than the N period. Moreover, the structural and functional statuses of the high eco-exergy grade communities (macrobenthic communities) in the ecosystem influenced the regional changes observed in the results of the integrated assessment. The significant seasonal variations in the plankton community affected the seasonal variations in the integrated assessment. The results of this study provide a scientific basis for the management and restoration of regional freshwater environments and ecosystems.