1
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Srinivasan S, Ranganathan V, McConnell EM, DeRosa MC. Simple solution and paper-based fluorescent aptasensors for toxic metal ions, thallium(l) and lead(ll). Anal Bioanal Chem 2024:10.1007/s00216-024-05614-0. [PMID: 39460770 DOI: 10.1007/s00216-024-05614-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2024] [Revised: 10/04/2024] [Accepted: 10/15/2024] [Indexed: 10/28/2024]
Abstract
Heavy metal ions, such as thallium(I) and lead(II) are environmental toxicants known to cause a severe threat to human and ecosystem health. This work investigates aptamers and intercalating chromophore-based complexes for the detection of these toxic species. In one method, a selective label-free "turn-on" biosensor was developed using a G-quadruplex-intercalating agent, berberine. Fluorescence, melting temperature (Tm), and circular dichroism analysis confirmed the affinity and selectivity results, illustrating the potential of these aptasensor methods for improving detection limits. These fluorescence assays were found to perform with a detection limit of 3.4 μM for Tl(I) and 0.84 nM for Pb(II). Furthermore, the assays were challenged successfully with Tl(I) and Pb(II) spiked into river water samples. We next developed paper-based fluorescent assays for Tl(I) and Pb(II), where the aptamer/berberine complex was spotted onto the paper test zone. When Tl(I) or Pb(II) ions solutions were spotted onto the top of the test zone and the spot was illuminated with a portable UV light (365 nm), a strong green fluorescence could be easily visualized with the naked eye. The lowest detection limits achieved with these fluorescent paper-based assays for Tl(I) and Pb(II) were 1.1 nM and 1.6 nM, respectively. The two fluorescent approaches presented here have the potential to be the basis of rapid, fast, and cost-efficient screening assays for these toxic species.
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Affiliation(s)
- Sathya Srinivasan
- Department of Chemistry, Carleton University, 1125 Colonel By Drive, Ottawa, ON, K1S 5B6, Canada
| | - Velu Ranganathan
- Department of Chemistry, Carleton University, 1125 Colonel By Drive, Ottawa, ON, K1S 5B6, Canada
| | - Erin M McConnell
- Department of Chemistry, Carleton University, 1125 Colonel By Drive, Ottawa, ON, K1S 5B6, Canada
| | - Maria C DeRosa
- Department of Chemistry, Carleton University, 1125 Colonel By Drive, Ottawa, ON, K1S 5B6, Canada.
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2
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Liu P, He Y, Liu X, Gao X. Label-free fluorescence aptasensor for the detection of cadmium(II) ion based on the conformational switching of aptamer and thioflavine T. ANAL SCI 2024; 40:481-487. [PMID: 38182840 DOI: 10.1007/s44211-023-00488-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Accepted: 11/26/2023] [Indexed: 01/07/2024]
Abstract
A simple label-free Cd2+ fluorescent aptasensor was proposed using aptamer as a recognition element and thioflavine T (ThT) as a signal reporter. The presence of Cd(II) can induce the conformational switching of the aptamer probe, accompanied by a change in fluorescence intensity. According to the difference in fluorescence signals before and after the addition of Cd2+, a fluorescence sensor for Cd2+ assay was established. Under the better experimental conditions, the sensor displayed a good linear range from 2 to 50 nM and the excellent detection limit was 0.8 nM. The method demonstrated high sensitivity and good selectivity. The aptasensor could detect Cd2+ in simulated water samples with satisfactory results. The proposed method had obvious advantages that was without chemical modification of fluorescent groups and complicated target preconcentration. It provided a new analytical platform for the detection of heavy metal ion pollution in environmental and biomedical fields.
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Affiliation(s)
- Ping Liu
- Shaanxi Key Laboratory of Comprehensive Utilization of Tailings Resources, College of Chemical Engineering and Modern Materials, Shangluo University, Shangluo, 726000, People's Republic of China.
- Shaanxi Engineering Research Center for Mineral Resources Clean & Efficient Conversion and New Materials, Shangluo University, Shangluo, 726000, People's Republic of China.
| | - Yu He
- Shaanxi Key Laboratory of Comprehensive Utilization of Tailings Resources, College of Chemical Engineering and Modern Materials, Shangluo University, Shangluo, 726000, People's Republic of China
- Shaanxi Engineering Research Center for Mineral Resources Clean & Efficient Conversion and New Materials, Shangluo University, Shangluo, 726000, People's Republic of China
| | - Xiaoqin Liu
- Shaanxi Xi'an No. 89 Middle School, Xi'an, 710003, People's Republic of China
| | - Xia Gao
- Shaanxi Key Laboratory of Comprehensive Utilization of Tailings Resources, College of Chemical Engineering and Modern Materials, Shangluo University, Shangluo, 726000, People's Republic of China
- Shaanxi Engineering Research Center for Mineral Resources Clean & Efficient Conversion and New Materials, Shangluo University, Shangluo, 726000, People's Republic of China
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3
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Azzouz A, Hejji L, Kumar V, Kim KH. Nanomaterials-based aptasensors: An efficient detection tool for heavy-metal and metalloid ions in environmental and biological samples. ENVIRONMENTAL RESEARCH 2023; 238:117170. [PMID: 37722582 DOI: 10.1016/j.envres.2023.117170] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Revised: 09/01/2023] [Accepted: 09/15/2023] [Indexed: 09/20/2023]
Abstract
In light of potential risks of heavy metal exposure, diverse aptasensors have been developed through the combination of aptamers with nanomaterials for the timely and efficient detection of metals in environmental and biological matrices. Aptamer-based sensors can benefit from multiple merits such as heightened sensitivity, facile production, uncomplicated operation, exceptional specificity, enhanced stability, low immunogenicity, and cost-effectiveness. This review highlights the detection capabilities of nanomaterial-based aptasensors for heavy-metal and metalloid ions based on their performance in terms of the basic quality assurance parameters (e.g., limit of detection, linear dynamic range, and response time). Out of covered studies, dendrimer/CdTe@CdS QDs-based ECL aptasensor was found as the most sensitive option with an LOD of 2.0 aM (atto-molar: 10-18 M) detection for Hg2+. The existing challenges in the nanomaterial-based aptasensors and their scientific solutions are also discussed.
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Affiliation(s)
- Abdelmonaim Azzouz
- Department of Chemistry, Faculty of Science, University of Abdelmalek Essaadi, B.P. 2121, M'Hannech II, 93002, Tetouan, Morocco
| | - Lamia Hejji
- Department of Chemistry, Faculty of Science, University of Abdelmalek Essaadi, B.P. 2121, M'Hannech II, 93002, Tetouan, Morocco; Department of Chemical, Environmental, and Materials Engineering, Higher Polytechnic School of Linares, University of Jaén, Campus Científico-Tecnológico, Cinturón Sur S/n, 23700, Linares, Jaén, Spain
| | - Vanish Kumar
- National Agri-Food Biotechnology Institute (NABI), S.A.S. Nagar, Punjab, 140306, India
| | - Ki-Hyun Kim
- Department of Civil and Environmental Engineering, Hanyang University, 222 Wangsimni-Ro, Seoul, 04763, South Korea.
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4
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Srinivasan S, Ranganathan V, McConnell EM, Murari BM, DeRosa MC. Aptamer-based colorimetric and lateral flow assay approaches for the detection of toxic metal ions, thallium(i) and lead(ii). RSC Adv 2023; 13:20040-20049. [PMID: 37409036 PMCID: PMC10318611 DOI: 10.1039/d3ra01658g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Accepted: 06/14/2023] [Indexed: 07/07/2023] Open
Abstract
Thallium(i) and lead(ii) ions are heavy metals and extremely toxic. These metals are environmental pollutants, posing a severe risk to the environment and human health. In this study, two approaches were examined using aptamer and nanomaterial-based conjugates for thallium and lead detection. The first approach utilized an in-solution adsorption-desorption approach to develop colorimetric aptasensors for the detection of thallium(i) and lead(ii) using gold or silver nanoparticles. The second approach was the development of lateral flow assays, and their performance was tested with thallium (limit of detection is 7.4 μM) and lead ion (limit of detection is 6.6 nM) spiked into real samples. The approaches assessed are rapid, inexpensive, and time efficient with the potential to become the basis for future biosensor devices.
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Affiliation(s)
- Sathya Srinivasan
- Department of Chemistry, Carleton University 1125 Colonel By Drive Ottawa ON K1S 5B6 Canada +1-613-520-2600 ext. 4388
- Department of Biotechnology, School of Bioscience and Technology VIT Vellore 632 104 TN India
| | - Velu Ranganathan
- Department of Chemistry, Carleton University 1125 Colonel By Drive Ottawa ON K1S 5B6 Canada +1-613-520-2600 ext. 4388
| | - Erin M McConnell
- Department of Chemistry, Carleton University 1125 Colonel By Drive Ottawa ON K1S 5B6 Canada +1-613-520-2600 ext. 4388
| | - Bhaskar Mohan Murari
- Department of Sensor and Biomedical Technology, School of Electronics Engineering VIT Vellore 632 104 TN India
| | - Maria C DeRosa
- Department of Chemistry, Carleton University 1125 Colonel By Drive Ottawa ON K1S 5B6 Canada +1-613-520-2600 ext. 4388
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5
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Sabah M, Fethi A. Electrochemical Detection of Lead in Real Samples Using Carbon Nanostructure and Inactivated E. coli as Low-Cost Sensitive Biosensor with High Electrocatalytic Performance. Electrocatalysis (N Y) 2022. [DOI: 10.1007/s12678-022-00760-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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6
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Zhao X, Gopinath SC, Zhao W. Immuno‐probed Multiwalled Carbon Nanotube Surface for Abdominal Aortic Aneurysm Biomarker Analysis. Biotechnol Appl Biochem 2022; 70:502-508. [PMID: 35661417 DOI: 10.1002/bab.2372] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Accepted: 05/30/2022] [Indexed: 11/10/2022]
Abstract
Abdominal aortic aneurysm (AAA), a medical complication, occurs when the aortic area becomes swollen and very large. It is mandatory to identify AAA to avoid the breakdown of aneurysms. C-reactive protein (CRP) has been recognized as one of the biomarkers for identifying AAA due to the possibility of CRP produced in vascular tissue, which contributes to the formation of an aneurysm, and it is elevated in patients with a ruptured AAA. This research work was designed to develop an immunosensor on a multiwalled carbon nanotube (MWCNT)-modified surface to quantify the CRP level. Anti-CRP specificity was constructed on the MWCNT surface through a silane linker to interact with CRP. The detection limit of CRP was calculated as 100 pM with an R2 (determination coefficient) value of 0.9855 (y = 2.3446x - 1.9922) on a linear regression graph. The dose-dependent linear pattern was registered from 200 to 3000 pM and attained the saturation level during binding at 3000 pM. Furthermore, serum-spiked CRP showed a clear increase in the current response, proving the specific recognition of CRP in biological samples. This designed biosensor identifies CRP at a lower level and can help diagnose AAA.
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Affiliation(s)
- Xuekai Zhao
- Department of Cardiovascular Surgery Zibo Central Hospital Zibo Shandong Province 255036 China
| | - Subash C.B. Gopinath
- Faculty of Chemical Engineering Technology Kangar 01000 Malaysia
- Institute of Nano Electronic Engineering, 02600 Arau Universiti Malaysia Perlis Perlis Malaysia
- Centre of Excellence for Nanobiotechnology and Nanomedicine (CoExNano), Faculty of Applied Sciences AIMST University Semeling Kedah 08100 Malaysia
| | - Weichao Zhao
- Department of Cardiovascular Surgery The Fourth Hospital of Hebei Medical, University Shijiazhuang Hebei Province 051411 China
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7
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Aptamer-modified biosensors to visualize neurotransmitter flux. J Neurosci Methods 2022; 365:109386. [PMID: 34653500 DOI: 10.1016/j.jneumeth.2021.109386] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 09/23/2021] [Accepted: 10/07/2021] [Indexed: 12/14/2022]
Abstract
Chemical biosensors with the capacity to continuously monitor various neurotransmitter dynamics can be powerful tools to understand complex signaling pathways in the brain. However, in vivo detection of neurochemicals is challenging for many reasons such as the rapid release and clearance of neurotransmitters in the extracellular space, or the low target analyte concentrations in a sea of interfering biomolecules. Biosensing platforms with adequate spatiotemporal resolution coupled to specific and selective receptors termed aptamers, demonstrate high potential to tackle such challenges. Herein, we review existing literature in this field. We first discuss nanoparticle-based systems, which have a simple in vitro implementation and easily interpretable results. We then examine methods employing near-infrared detection for deeper tissue imaging, hence easier translation to in vivo implementation. We conclude by reviewing live cell imaging of neurotransmitter release via aptamer-modified platforms. For each of these sensors, we discuss the associated challenges for translation to real-time in vivo neurochemical imaging. Realization of in vivo biosensors for neurotransmitters will drive future development of early prevention strategies, treatments, and therapeutics for psychiatric and neurodegenerative diseases.
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8
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Li T, Zhang Y, Sun X, Zhang Y, Wang Y, Nie Z. Dual dye-labeled G-quadruplex aptasensor for detection of thallium(I) using ratiometric fluorescence resonance energy transfer. Talanta 2021; 233:122508. [PMID: 34215123 DOI: 10.1016/j.talanta.2021.122508] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Revised: 05/03/2021] [Accepted: 05/06/2021] [Indexed: 11/29/2022]
Abstract
A fluorescent probe was developed for ratiometric detection of thallium ions in mineral water samples by modifying a G-rich aptamer (PS2.M - 7) with a fluorescence donor (Cyanine-3, Cy3) and a quencher (Cyanine-5, Cy5). The probe had a random coil structure that changed into a G-quadruplex structure upon binding with Tl+. This change in structure decreased the distance between the donor and acceptor moieties, which resulted in fluorescence resonance energy transfer between Cy3 and Cy5. Under optimized conditions, the limit of detection and linear concentration range for Tl+ were 30.1 μM (3σ) and 10 μM-10 mM (R2 = 0.9981), respectively. This simple and cost-effective fluorescence sensor provided satisfactory results for detection of thallium ions in spiked mineral water samples.
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Affiliation(s)
- Tongtong Li
- State Key Laboratory of Toxicology and Medical Countermeasures, Institute of Pharmacology and Toxicology, Academy of Military Medical Sciences, Beijing 100850, China; School of Chemical Engineering and Technology, Tianjin University, Tianjin 300350, China.
| | - Yan Zhang
- State Key Laboratory of Toxicology and Medical Countermeasures, Institute of Pharmacology and Toxicology, Academy of Military Medical Sciences, Beijing 100850, China; School of Chemical Engineering and Technology, Tianjin University, Tianjin 300350, China.
| | - Xiaohong Sun
- State Key Laboratory of Toxicology and Medical Countermeasures, Institute of Pharmacology and Toxicology, Academy of Military Medical Sciences, Beijing 100850, China.
| | - Yanjin Zhang
- State Key Laboratory of Toxicology and Medical Countermeasures, Institute of Pharmacology and Toxicology, Academy of Military Medical Sciences, Beijing 100850, China.
| | - Yongan Wang
- State Key Laboratory of Toxicology and Medical Countermeasures, Institute of Pharmacology and Toxicology, Academy of Military Medical Sciences, Beijing 100850, China.
| | - Zhiyong Nie
- State Key Laboratory of Toxicology and Medical Countermeasures, Institute of Pharmacology and Toxicology, Academy of Military Medical Sciences, Beijing 100850, China.
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9
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Singh H, Bamrah A, Bhardwaj SK, Deep A, Khatri M, Kim KH, Bhardwaj N. Nanomaterial-based fluorescent sensors for the detection of lead ions. JOURNAL OF HAZARDOUS MATERIALS 2021; 407:124379. [PMID: 33309138 DOI: 10.1016/j.jhazmat.2020.124379] [Citation(s) in RCA: 51] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2020] [Revised: 10/22/2020] [Accepted: 10/23/2020] [Indexed: 06/12/2023]
Abstract
Lead (Pb) poisoning has been a scourge to the human to pose sighnificant health risks (e.g., organ disorders, carcinogenicity, and genotoxicity) as observed from many different parts of the world, especially in developing countries. The demand for accurate sensors for its detection, especially in environmental media (soil, water, food, etc.) has hence been growing steadily over the years. The potential utility of fluorescent nanosensors as an important analytical tool is recognized due to their astonishing characteristics (e.g., high sensitivity/selectivity, enhanced detection performance, low cost, portability, and rapid on-site detection ability). This review is organized to offer insight into the recent developments in fluorescent nanosensing technology for the detection of lead ions (Pb2+). To this end, different types of nanomaterials explored for such applications have been classified and evaluated with respect to performance, especially in terms of sensitivity. This review will help researchers gain a better knowledge on the status and importance of optical nanosensors so as to remediate the contamination of lead and associated problems. The technical challenges and prospects in the development of nanosensing systems for Pb2+ are also discussed.
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Affiliation(s)
- Harpreet Singh
- Department of Biotechnology, University Institute of Engineering Technology (UIET), Panjab University, Chandigarh, India
| | - Amy Bamrah
- Department of Biotechnology, University Institute of Engineering Technology (UIET), Panjab University, Chandigarh, India
| | - Sanjeev K Bhardwaj
- Department of Nanomaterials and Application Technology, Center of Innovative and Applied Bioprocessing, Sector 81 (Knowledge City), S.A.S. Nagar, 140306 Punjab, India
| | - Akash Deep
- Central Scientific Instruments Organization, Sector 30C, Chandigarh 160030, India
| | - Madhu Khatri
- Department of Biotechnology, University Institute of Engineering Technology (UIET), Panjab University, Chandigarh, India
| | - Ki-Hyun Kim
- Department of Civil and Environmental Engineering, Hanyang University, 222 Wangsimni-Ro, Seoul 04763, Republic of Korea.
| | - Neha Bhardwaj
- Department of Biotechnology, University Institute of Engineering Technology (UIET), Panjab University, Chandigarh, India.
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10
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Zhao X, Wang Y, Li J, Huo B, Huang H, Bai J, Peng Y, Li S, Han D, Ren S, Wang J, Gao Z. A fluorescence aptasensor for the sensitive detection of T-2 toxin based on FRET by adjusting the surface electric potentials of UCNPs and MIL-101. Anal Chim Acta 2021; 1160:338450. [PMID: 33894966 DOI: 10.1016/j.aca.2021.338450] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2020] [Revised: 03/04/2021] [Accepted: 03/22/2021] [Indexed: 12/12/2022]
Abstract
T-2 toxin is a class A trichothecene mycotoxin produced by Fusarium, which exhibits genotoxic, cytotoxic, and immunotoxic effects in animals and humans. In this study, we developed an aptasensor for the sensitive detection of T-2 toxin, which was based on fluorescence resonance energy transfer (FRET), and acted by adjusting the electric potential on the surface of upconversion nanoparticles (UCNPs) and MIL-101(Cr). In addition, it combined the excellent spectral properties of UCNPs with the good adsorption quenching abilities of metal organic frameworks (MOFs). Under the action of π-π stacking interactions, the UCNPs-aptamer was adsorbed onto the surface of MIL-101, leading to fluorescence quenching due to the occurrence of FRET. After the addition of T-2 toxin, owing to its selective binding to the UCNPs-aptamer, the UCNPs-aptamer moved away from MIL-101(Cr), resulting in fluorescence recovery. Moreover, the extent of fluorescence recovery was positively correlated with the concentration of T-2 toxin. The limit of detection (LOD) of this sensor was 0.087 ng mL-1 (S/N = 3), and a good linear correlation was observed between the fluorescence intensity and the T-2 toxin concentration in the range of 0.1-100 ng mL-1. Moreover, the recovery of this method was 97.52-109.53% for corn meal samples (relative standard deviation, RSD = 1.7-2.4%) and 90.81-100.02% for beer samples (RSD = 2.4-2.7%). By adjusting the surface electric potentials, the efficient fluorescence aptasensor combined the advantages of UCNPs and MIL-101(Cr) and allowed the first application of such a system in toxin detection, thereby indicating its potential food sample analysis and biochemical sensing.
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Affiliation(s)
- Xudong Zhao
- Tianjin Key Laboratory of Risk Assessment and Control Technology for Environment and Food Safety, Tianjin Institute of Environmental and Operational Medicine, Tianjin, 300050, PR China
| | - Yu Wang
- Tianjin Key Laboratory of Risk Assessment and Control Technology for Environment and Food Safety, Tianjin Institute of Environmental and Operational Medicine, Tianjin, 300050, PR China
| | - Jingzhi Li
- Tianjin Key Laboratory of Risk Assessment and Control Technology for Environment and Food Safety, Tianjin Institute of Environmental and Operational Medicine, Tianjin, 300050, PR China; School of Public Health, Lanzhou University, Lanzhou, 730030, PR China
| | - Bingyang Huo
- Tianjin Key Laboratory of Risk Assessment and Control Technology for Environment and Food Safety, Tianjin Institute of Environmental and Operational Medicine, Tianjin, 300050, PR China; School of Chemistry, Sun Yat-Sen University, Guangzhou, 510000, PR China
| | - Hui Huang
- Tianjin Key Laboratory of Risk Assessment and Control Technology for Environment and Food Safety, Tianjin Institute of Environmental and Operational Medicine, Tianjin, 300050, PR China; College of Chemistry and Materials Science, Shanghai Normal University, Shanghai, 200234, PR China
| | - Jialei Bai
- Tianjin Key Laboratory of Risk Assessment and Control Technology for Environment and Food Safety, Tianjin Institute of Environmental and Operational Medicine, Tianjin, 300050, PR China
| | - Yuan Peng
- Tianjin Key Laboratory of Risk Assessment and Control Technology for Environment and Food Safety, Tianjin Institute of Environmental and Operational Medicine, Tianjin, 300050, PR China
| | - Shuang Li
- Tianjin Key Laboratory of Risk Assessment and Control Technology for Environment and Food Safety, Tianjin Institute of Environmental and Operational Medicine, Tianjin, 300050, PR China
| | - Dianpeng Han
- Tianjin Key Laboratory of Risk Assessment and Control Technology for Environment and Food Safety, Tianjin Institute of Environmental and Operational Medicine, Tianjin, 300050, PR China
| | - Shuyue Ren
- Tianjin Key Laboratory of Risk Assessment and Control Technology for Environment and Food Safety, Tianjin Institute of Environmental and Operational Medicine, Tianjin, 300050, PR China
| | - Jiang Wang
- Tianjin Key Laboratory of Risk Assessment and Control Technology for Environment and Food Safety, Tianjin Institute of Environmental and Operational Medicine, Tianjin, 300050, PR China
| | - Zhixian Gao
- Tianjin Key Laboratory of Risk Assessment and Control Technology for Environment and Food Safety, Tianjin Institute of Environmental and Operational Medicine, Tianjin, 300050, PR China.
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11
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Rahnama S, Shariati S, Divsar F. Selective aptamer conjugation to silver-coated magnetite nanoparticles for magnetic solid-phase extraction of trace amounts of Pb2+ ions. RSC Adv 2021; 11:4971-4982. [PMID: 35424451 PMCID: PMC8694522 DOI: 10.1039/d1ra00006c] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2021] [Accepted: 01/02/2021] [Indexed: 11/21/2022] Open
Abstract
Herein, a novel aptamer-functionalized magnetic adsorbent was developed and combined with magnetic solid-phase extraction (MSPE) for the specific enrichment of Pb2+ ions prior to flame atomic absorption spectrometric detection.
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Affiliation(s)
- Sara Rahnama
- Department of Chemistry
- Rasht Branch
- Islamic Azad University
- Rasht
- Iran
| | - Shahab Shariati
- Department of Chemistry
- Rasht Branch
- Islamic Azad University
- Rasht
- Iran
| | - Faten Divsar
- Department of Chemistry
- Payame Noor University
- Tehran
- Iran
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12
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Wu Y, Shi Y, Deng S, Wu C, Deng R, He G, Zhou M, Zhong K, Gao H. Metal-induced G-quadruplex polymorphism for ratiometric and label-free detection of lead pollution in tea. Food Chem 2020; 343:128425. [PMID: 33127221 DOI: 10.1016/j.foodchem.2020.128425] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2020] [Revised: 10/15/2020] [Accepted: 10/15/2020] [Indexed: 02/08/2023]
Abstract
Lead pollution are critical concerns for food safety and human health. Herein, a ratiometric metal-induced G-quadruplex polymorphism was introduced to construct aptamer probes, enabling label-free and ratiometric detection of lead in tea, thus is promising for on-site detection of lead pollution. The key feature of the aptamer probe is the synergistic utilization of the dual-wavelength fluorescent signal outputs from a G-quadruplex specific dye and a DNA intercalation dye under a single-wavelength excitation, leading to a more stable and reliable recognition of Pb2+ than that of analyses based on single fluorescent reporter. The aptamer probe allowed to a mix-and-read, rapid, cost-effective detection of Pb2+ with high specificity and accuracy. Pb2+ analysis in tap water and tea exhibited good performance with recovery rates of 92.3%-109.0%. The adoption of ratiometric metal-induced G-quadruplex polymorphism would be a compelling design strategy for constructing robust aptasensor, facilitating the translation of aptamer for food safety control.
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Affiliation(s)
- Yanping Wu
- College of Biomass Science and Engineering, Healthy Food Evaluation Research Center and Key Laboratory of Food Science and Technology of Ministry of Education of Sichuan Province, Sichuan University, Chengdu 610065, China
| | - Yachen Shi
- College of Biomass Science and Engineering, Healthy Food Evaluation Research Center and Key Laboratory of Food Science and Technology of Ministry of Education of Sichuan Province, Sichuan University, Chengdu 610065, China
| | - Sha Deng
- College of Biomass Science and Engineering, Healthy Food Evaluation Research Center and Key Laboratory of Food Science and Technology of Ministry of Education of Sichuan Province, Sichuan University, Chengdu 610065, China
| | - Chengyong Wu
- State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, Sichuan University, Collaborative Innovation Center of Biotherapy, Chengdu, Sichuan 610041, China
| | - Ruijie Deng
- College of Biomass Science and Engineering, Healthy Food Evaluation Research Center and Key Laboratory of Food Science and Technology of Ministry of Education of Sichuan Province, Sichuan University, Chengdu 610065, China.
| | - Guiping He
- College of Biomass Science and Engineering, Healthy Food Evaluation Research Center and Key Laboratory of Food Science and Technology of Ministry of Education of Sichuan Province, Sichuan University, Chengdu 610065, China
| | - Mi Zhou
- College of Biomass Science and Engineering, Healthy Food Evaluation Research Center and Key Laboratory of Food Science and Technology of Ministry of Education of Sichuan Province, Sichuan University, Chengdu 610065, China
| | - Kai Zhong
- College of Biomass Science and Engineering, Healthy Food Evaluation Research Center and Key Laboratory of Food Science and Technology of Ministry of Education of Sichuan Province, Sichuan University, Chengdu 610065, China
| | - Hong Gao
- College of Biomass Science and Engineering, Healthy Food Evaluation Research Center and Key Laboratory of Food Science and Technology of Ministry of Education of Sichuan Province, Sichuan University, Chengdu 610065, China.
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13
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Yu Y, Zhang Q, Gao H, Yan C, Zheng X, Yang T, Zhou X, Shao Y. Metalloenzyme-mimic innate G-quadruplex DNAzymes using directly coordinated metal ions as active centers. Dalton Trans 2020; 49:13160-13166. [PMID: 32936164 DOI: 10.1039/d0dt02871a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
G-quadruplex DNAs (G4s) have been reported to exhibit the DNAzyme activities by binding with some metal complexes and functional organic ligands. However, there is a challenge to develop metalloenzyme-mimic G4-based innate DNAzymes using the complexed metal ions directly serving as the active centers. This will diversify DNAzymes for developing novel devices since G4 structures are more polymorphic than the other DNA foldings. In this work, we found that the lanthanide trivalent cerium ion of Ce3+ can bind to the human telomere G4 (htG4) according to a 1 : 2 binding mode favorable for creating metalloenzymes-mimic G4 DNAzymes. This Ce3+-G4 entity exhibits a peroxidase activity towards the oxidation of the substrate of 3,3,5,5-tetramethylbenzidine (TMB) by hydrogen peroxide. The 5' G4 tetrads with the orderly arranged carbonyl oxygen atoms are believed to be the coordination sites for Ce3+ and favor the conversion between Ce3+ and Ce4+. Our work provides an alternative feasibility in developing the G4-based innate DNAzymes for variant applications.
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Affiliation(s)
- Yali Yu
- Zhejiang Key Laboratory for Reactive Chemistry on Solid Surfaces, Institute of Physical Chemistry, Zhejiang Normal University, Jinhua 321004, Zhejiang, People's Republic of China.
| | - Qingqing Zhang
- Zhejiang Key Laboratory for Reactive Chemistry on Solid Surfaces, Institute of Physical Chemistry, Zhejiang Normal University, Jinhua 321004, Zhejiang, People's Republic of China.
| | - Heng Gao
- Zhejiang Key Laboratory for Reactive Chemistry on Solid Surfaces, Institute of Physical Chemistry, Zhejiang Normal University, Jinhua 321004, Zhejiang, People's Republic of China.
| | - Chenxiao Yan
- Zhejiang Key Laboratory for Reactive Chemistry on Solid Surfaces, Institute of Physical Chemistry, Zhejiang Normal University, Jinhua 321004, Zhejiang, People's Republic of China.
| | - Xiong Zheng
- Zhejiang Key Laboratory for Reactive Chemistry on Solid Surfaces, Institute of Physical Chemistry, Zhejiang Normal University, Jinhua 321004, Zhejiang, People's Republic of China.
| | - Tong Yang
- Zhejiang Key Laboratory for Reactive Chemistry on Solid Surfaces, Institute of Physical Chemistry, Zhejiang Normal University, Jinhua 321004, Zhejiang, People's Republic of China.
| | - Xiaoshun Zhou
- Zhejiang Key Laboratory for Reactive Chemistry on Solid Surfaces, Institute of Physical Chemistry, Zhejiang Normal University, Jinhua 321004, Zhejiang, People's Republic of China.
| | - Yong Shao
- Zhejiang Key Laboratory for Reactive Chemistry on Solid Surfaces, Institute of Physical Chemistry, Zhejiang Normal University, Jinhua 321004, Zhejiang, People's Republic of China.
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14
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Interfacing DNA with nanoparticles: Surface science and its applications in biosensing. Int J Biol Macromol 2020; 151:757-780. [DOI: 10.1016/j.ijbiomac.2020.02.217] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Revised: 02/19/2020] [Accepted: 02/19/2020] [Indexed: 12/17/2022]
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15
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Khoshbin Z, Housaindokht MR, Izadyar M, Bozorgmehr MR, Verdian A. Temperature and molecular crowding effects on the sensitivity of T30695 aptamer toward Pb2+ion: a joint molecular dynamics simulation and experimental study. MOLECULAR SIMULATION 2020. [DOI: 10.1080/08927022.2020.1751842] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Zahra Khoshbin
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran
| | | | - Mohammad Izadyar
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran
| | | | - Asma Verdian
- Department of Food Safety and Quality Control, Research Institute of Food Science and Technology (RIFST), Mashhad, Iran
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16
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Pan S, Yao D, Liang A, Wen G, Jiang Z. New Ag-Doped COF Catalytic Amplification Aptamer Analytical Platform for Trace Small Molecules with the Resonance Rayleigh Scattering Technique. ACS APPLIED MATERIALS & INTERFACES 2020; 12:12120-12132. [PMID: 32072804 DOI: 10.1021/acsami.0c00205] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Covalent organic frameworks (COFs) and Ag-doped COFs (AgCOFs) are prepared by the polycondensation procedure and characterized by electron microscopy and molecular spectral techniques. Their catalysis of the Cu2O particle reaction of glucose (GL)-Cu(II) was examined by resonance Rayleigh scattering (RRS), and AgCOFs were found to exhibit the strongest catalysis. The melamine (ML) aptamers (AptML) can attach to the surface of AgCOF and inhibit its catalytic activity. When melamine (ML) is added to this reacting solution, AptML-ML complexes are formed and the Apts are desorbed from the surface of AgCOF. As the concentration of ML increased, the catalytic activity of AgCOF increased and the RRS signal enhanced due to the increase in Cu2O particles. When the ML concentration was in the range of 0.79-13.2 nmol/L, the RRS intensity increased linearly, with a detection limit of 0.72 nmol/L. When the Apts of urea and bisphenol A (BPA) were replaced by the AptML, 66.7-1333 nmol/L urea and 0.33-2.7 nmol/L BPA, respectively, could also be determined, with detection limits of 30.4 nmol/L urea and 0.15 nmol/L BPA. Based on this, a new AgCOF amplification RRS method was established.
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Affiliation(s)
- Siqi Pan
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Ministry of Education, Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guangxi Normal University, Guilin 541004, China
| | - Dongmei Yao
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Ministry of Education, Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guangxi Normal University, Guilin 541004, China
| | - Aihui Liang
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Ministry of Education, Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guangxi Normal University, Guilin 541004, China
| | - Guiqing Wen
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Ministry of Education, Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guangxi Normal University, Guilin 541004, China
| | - Zhiliang Jiang
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Ministry of Education, Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guangxi Normal University, Guilin 541004, China
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17
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Khoshbin Z, Housaindokht MR, Izadyar M, Bozorgmehr MR, Verdian A. The investigation of the G-quadruplex aptamer selectivity to Pb 2+ ion: a joint molecular dynamics simulation and density functional theory study. J Biomol Struct Dyn 2019; 38:3659-3675. [PMID: 31496379 DOI: 10.1080/07391102.2019.1664933] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
The aptamers with the ability to form a G-quadruplex structure can be stable in the presence of some ions. Hence, study of the interactions between such aptamers and ions can be beneficial to determine the highest selective aptamer toward an ion. In this article, molecular dynamics (MD) simulations and quantum mechanics (QM) calculations have been applied to investigate the selectivity of the T30695 aptamer toward Pb2+ in comparison with some ions. The Free Energy Landscape (FEL) analysis indicates that Pb2+ has remained inside the aptamer during the MD simulation, while the other ions have left it. The Molecular Mechanics Poisson-Boltzmann Surface Area (MM-PBSA) binding energies prove that the conformational stability of the aptamer is the highest in the presence of Pb2+. According to the compaction parameters, the greatest compressed ion-aptamer complex, and hence, the highest ion-aptamer interaction have been induced in the presence of Pb2+. The contact maps clarify the closer contacts between the nucleotides of the aptamer in the presence of Pb2+. The density functional theory (DFT) results show that Pb2+ forms the most stable complex with the aptamer, which is consistent with the MD results. The QM calculations reveal that the N-H bonds and the O…H distances are the longest and the shortest, respectively, in the presence of Pb2+. The obtained results verify that the strongest hydrogen bonds (HBs), and hence, the most compressed aptamer structure are induced by Pb2+. Besides, atoms in molecules (AIM) and natural bond orbital (NBO) analyses confirm the results.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Zahra Khoshbin
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran
| | | | - Mohammad Izadyar
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran
| | | | - Asma Verdian
- Department of Food Safety and Quality Control, Research Institute of Food Science and Technology (RIFST), Mashhad, Iran
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18
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Theoretical design and experimental study of new aptamers with the improved target-affinity: New insights into the Pb2+-specific aptamers as a case study. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.111159] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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19
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De Acha N, Elosúa C, Corres JM, Arregui FJ. Fluorescent Sensors for the Detection of Heavy Metal Ions in Aqueous Media. SENSORS 2019; 19:s19030599. [PMID: 30708989 PMCID: PMC6386841 DOI: 10.3390/s19030599] [Citation(s) in RCA: 115] [Impact Index Per Article: 23.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Revised: 01/17/2019] [Accepted: 01/23/2019] [Indexed: 12/17/2022]
Abstract
Due to the risks that water contamination implies for human health and environmental protection, monitoring the quality of water is a major concern of the present era. Therefore, in recent years several efforts have been dedicated to the development of fast, sensitive, and selective sensors for the detection of heavy metal ions. In particular, fluorescent sensors have gained in popularity due to their interesting features, such as high specificity, sensitivity, and reversibility. Thus, this review is devoted to the recent advances in fluorescent sensors for the monitoring of these contaminants, and special focus is placed on those devices based on fluorescent aptasensors, quantum dots, and organic dyes.
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Affiliation(s)
- Nerea De Acha
- Department of Electric, Electronic and Communications Engineering, Public University of Navarra, E-31006 Pamplona, Spain.
| | - César Elosúa
- Department of Electric, Electronic and Communications Engineering, Public University of Navarra, E-31006 Pamplona, Spain.
- Institute of Smart Cities (ISC), Public University of Navarra, E-31006 Pamplona, Spain.
| | - Jesús M Corres
- Department of Electric, Electronic and Communications Engineering, Public University of Navarra, E-31006 Pamplona, Spain.
- Institute of Smart Cities (ISC), Public University of Navarra, E-31006 Pamplona, Spain.
| | - Francisco J Arregui
- Department of Electric, Electronic and Communications Engineering, Public University of Navarra, E-31006 Pamplona, Spain.
- Institute of Smart Cities (ISC), Public University of Navarra, E-31006 Pamplona, Spain.
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20
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Singh R, Das G. "Turn-on" Pb 2+ sensing and rapid detection of biothiols in aqueous medium and real samples. Analyst 2019; 144:567-572. [PMID: 30426975 DOI: 10.1039/c8an01624k] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Detection of lead has continued to be of immense interest in the present industrial as well as environmental diaspora. To this end, we report a prudent Schiff base which enables the sensitive detection of Pb2+ ions in mixed aqueous medium. The probe is afforded by simple synthetic and purification processes. Further, the probe employs simple mechanistic detection of Pb2+ and also successively detects a host of biothiols. The sensor is also used to detect Pb2+ ions in real water samples and consecutive detection of a variety of biothiols, including functionalized thiouracils, in onion and garlic extract. The fact that the Pb2+-L ensemble is 'non-selective' towards any particular thiol substituted analyte in real samples could as well prove to be an interesting contribution for chemical and biological detoxification processes.
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Affiliation(s)
- Rupinder Singh
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati 781039, India.
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21
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Zhou B, Yang XY, Wang YS, Yi JC, Zeng Z, Zhang H, Chen YT, Hu XJ, Suo QL. Label-free fluorescent aptasensor of Cd2+ detection based on the conformational switching of aptamer probe and SYBR green I. Microchem J 2019. [DOI: 10.1016/j.microc.2018.09.028] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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22
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Nosrati R, Dehghani S, Karimi B, Yousefi M, Taghdisi SM, Abnous K, Alibolandi M, Ramezani M. Siderophore-based biosensors and nanosensors; new approach on the development of diagnostic systems. Biosens Bioelectron 2018; 117:1-14. [DOI: 10.1016/j.bios.2018.05.057] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2018] [Revised: 05/19/2018] [Accepted: 05/29/2018] [Indexed: 02/06/2023]
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23
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Practical Application of Aptamer-Based Biosensors in Detection of Low Molecular Weight Pollutants in Water Sources. Molecules 2018; 23:molecules23020344. [PMID: 29414854 PMCID: PMC6017897 DOI: 10.3390/molecules23020344] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2018] [Revised: 01/30/2018] [Accepted: 01/30/2018] [Indexed: 01/08/2023] Open
Abstract
Water pollution has become one of the leading causes of human health problems. Low molecular weight pollutants, even at trace concentrations in water sources, have aroused global attention due to their toxicity after long-time exposure. There is an increased demand for appropriate methods to detect these pollutants in aquatic systems. Aptamers, single-stranded DNA or RNA, have high affinity and specificity to each of their target molecule, similar to antigen-antibody interaction. Aptamers can be selected using a method called Systematic Evolution of Ligands by EXponential enrichment (SELEX). Recent years we have witnessed great progress in developing aptamer selection and aptamer-based sensors for low molecular weight pollutants in water sources, such as tap water, seawater, lake water, river water, as well as wastewater and its effluents. This review provides an overview of aptamer-based methods as a novel approach for detecting low molecular weight pollutants in water sources.
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24
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Wang S, Mao B, Wu M, Liang J, Deng L. Influence of aptamer-targeted antibiofilm agents for treatment of Pseudomonas aeruginosa biofilms. Antonie van Leeuwenhoek 2017; 111:199-208. [PMID: 29098517 DOI: 10.1007/s10482-017-0941-4] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 06/08/2017] [Accepted: 09/05/2017] [Indexed: 10/18/2022]
Abstract
Biofilms are bacterial communities consisting of numerous extracellular polymeric substances. Infections caused by biofilm-forming bacteria are considered to be a major threat to health security and so novel approaches to control biofilm are of importance. Aptamers are single-strand nucleic acid molecules that have high selectivity to their targets. Single-walled carbon nanotubes (SWNTs) are common nanomaterials and have been shown to be toxic to bacterial biofilms. The aim of this study was to test whether an aptamer could play a role as targeting agents to enhance the efficiency of anti-biofilm agents. Hence, two complexes (aptamer-SWNTs and aptamer-ciprofloxacin-SWNTs) based on an aptamer which targets Pseudomonas aeruginosa and SWNTs were constructed. Both complexes were assessed against P. aeruginosa biofilms. In vitro tests demonstrated that the aptamer-SWNTs could inhibit ~36% more biofilm formation than SWNTs alone. Similarly, the aptamer-ciprofloxacin-SWNTs had a higher anti-biofilm efficiency than either component or simple mixtures of two components. Our study underscores the potential of aptamers as targeting agents for anti-biofilm compounds, as well as providing a new strategy to control biofilms.
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Affiliation(s)
- Sheng Wang
- State Key Laboratory of Developmental Biology of Freshwater, College of Life Science, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.,Changsha Institute for Food and Drug Control, Changsha, 410081, Hunan, People's Republic of China
| | - Biyao Mao
- State Key Laboratory of Developmental Biology of Freshwater, College of Life Science, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China
| | - Mingxi Wu
- State Key Laboratory of Developmental Biology of Freshwater, College of Life Science, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China
| | - Jingjing Liang
- State Key Laboratory of Developmental Biology of Freshwater, College of Life Science, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China
| | - Le Deng
- State Key Laboratory of Developmental Biology of Freshwater, College of Life Science, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
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25
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Farzin L, Shamsipur M, Sheibani S. A review: Aptamer-based analytical strategies using the nanomaterials for environmental and human monitoring of toxic heavy metals. Talanta 2017; 174:619-627. [PMID: 28738631 DOI: 10.1016/j.talanta.2017.06.066] [Citation(s) in RCA: 123] [Impact Index Per Article: 17.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2017] [Revised: 06/23/2017] [Accepted: 06/24/2017] [Indexed: 12/21/2022]
Abstract
Recent developments in biotechnology offer the new methods for the sensitive detection of heavy metals based on the affinity and specificity of aptamers, as nucleic acid ligands selected from random sequence pools in vitro. Heavy metals have received considerable importance as the most toxic metallic pollutants which may cause serious environmental damages. They are classified as trace elements because of their presence in trace concentrations in various environmental matrices. Thus, the precise and sensitive methods to detect heavy metals are important to ensure human and environment safety. Aptamers as the biological probes, show high binding affinity which can often be directly translated into high detection sensitivity. On the other hand, high selectivity and stability make them possible to detect a wide range of targets, especially metallic ions. This review provides current progress of aptamers for environmental and biological monitoring of heavy metals using the nanomaterials mainly in two groups: (i) aptamer based biosensors (aptasensors) and (ii) aptamer based biosorbents (aptasorbents). The introduction of nanomaterials can efficiently increase the immobilization quantity of aptamers. Furthermore, they play an important role in the orientation and assembly density controlling of aptamers for the optimized recognition ability.
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Affiliation(s)
- Leila Farzin
- Radiation Application Research School, Nuclear Science and Technology Research Institute, P.O. Box 11365-3486, Tehran, Iran.
| | - Mojtaba Shamsipur
- Department of Chemistry, Razi University, P.O. Box 67149-67346, Kermanshah, Iran
| | - Shahab Sheibani
- Radiation Application Research School, Nuclear Science and Technology Research Institute, P.O. Box 11365-3486, Tehran, Iran
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26
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Affiliation(s)
- Wenhu Zhou
- Xiangya
School of Pharmaceutical Sciences, Central South University, Changsha, Hunan 410013, China
- Department
of Chemistry, Water Institute, and Waterloo Institute for Nanotechnology, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
| | - Runjhun Saran
- Department
of Chemistry, Water Institute, and Waterloo Institute for Nanotechnology, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
| | - Juewen Liu
- Department
of Chemistry, Water Institute, and Waterloo Institute for Nanotechnology, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
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27
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Voltammetric determination of lead(II) by using exonuclease III and gold nanoparticles, and by exploiting the conformational change of the complementary strand of an aptamer. Mikrochim Acta 2017. [DOI: 10.1007/s00604-017-2316-y] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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28
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Yan M, Zhu C, Huang Y, Yan J, Chen A. Ultrasensitive detection of lead(II) using a turn-on probe based on the use of an aptamer and a water-soluble fluorescent perylene probe. Mikrochim Acta 2017. [DOI: 10.1007/s00604-017-2292-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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29
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Taghdisi SM, Danesh NM, Ramezani M, Ghows N, Mousavi Shaegh SA, Abnous K. A novel fluorescent aptasensor for ultrasensitive detection of microcystin-LR based on single-walled carbon nanotubes and dapoxyl. Talanta 2017; 166:187-192. [PMID: 28213221 DOI: 10.1016/j.talanta.2017.01.053] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2016] [Revised: 01/16/2017] [Accepted: 01/18/2017] [Indexed: 12/25/2022]
Abstract
To assure water safety and protect human health, precise and simple analytical approaches are highly desired to determine low concentrations of microcystin-leucine-arginine (MC-LR), a toxin, in both water and serum samples. Herein, a simple, rapid and accurate aptamer-based fluorescent sensor was used for selective recognition of MC-LR, based on single-walled carbon nanotubes (SWNTs) as immobilizers, dapoxyl as a fluorescent dye, DAP-10 as a specific aptamer for dapoxyl and unmodified MC-LR aptamer (Apt) as a sensing ligand. The sensing method was developed to produce a remarkable fluorescence intensity difference in the absence and presence of MC-LR. Moreover, the Apt was used without any modification. In the absence of MC-LR, the dapoxyl could bind to DAP-10, leading to a strong fluorescence intensity. In the presence of MC-LR, DAP-10 bound to the surface of SWNTs, resulting in a very weak fluorescence intensity. Under optimized conditions, the presented fluorescent analytical approach showed high selectivity toward MC-LR with a limit of detection (LOD) of 138 pM. This new method indicated excellent analytical performance for MC-LR detection in tap water and serum samples with LODs of 135 and 168 pM, respectively.
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Affiliation(s)
- Seyed Mohammad Taghdisi
- Targeted Drug Delivery Research Center, Mashhad University of Medical Sciences, Mashhad, Iran; Department of Pharmaceutical Biotechnology, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Noor Mohammad Danesh
- Nanotechnology Research Center, Mashhad University of Medical Sciences, Mashhad, Iran; Research Institute of Sciences and New Technology, Mashhad, Iran; Student Research Committee, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Mohammad Ramezani
- Nanotechnology Research Center, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Narjes Ghows
- Department of Chemistry, Ferdowsi University of Mashhad, Mashhad, Iran
| | | | - Khalil Abnous
- Pharmaceutical Research Center, Mashhad University of Medical Sciences, Mashhad, Iran; Department of Medicinal Chemistry, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran.
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30
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Shojaei TR, Salleh MAM, Sijam K, Rahim RA, Mohsenifar A, Safarnejad R, Tabatabaei M. Detection of Citrus tristeza virus by using fluorescence resonance energy transfer-based biosensor. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2016; 169:216-22. [PMID: 27380305 DOI: 10.1016/j.saa.2016.06.052] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/01/2016] [Revised: 06/12/2016] [Accepted: 06/28/2016] [Indexed: 05/11/2023]
Abstract
Due to the low titer or uneven distribution of Citrus tristeza virus (CTV) in field samples, detection of CTV by using conventional detection techniques may be difficult. Therefore, in the present work, the cadmium-telluride quantum dots (QDs) was conjugated with a specific antibody against coat protein (CP) of CTV, and the CP were immobilized on the surface of gold nanoparticles (AuNPs) to develop a specific and sensitive fluorescence resonance energy transfer (FRET)-based nanobiosensor for detecting CTV. The maximum FRET efficiency for the developed nano-biosensor was observed at 60% in AuNPs-CP/QDs-Ab ratio of 1:8.5. The designed system showed higher sensitivity and specificity over enzyme linked immunosorbent assay (ELISA) with a limit of detection of 0.13μgmL(-1) and 93% and 94% sensitivity and specificity, respectively. As designed sensor is rapid, sensitive, specific and efficient in detecting CTV, this could be envisioned for diagnostic applications, surveillance and plant certification program.
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Affiliation(s)
- Taha Roodbar Shojaei
- Institute of Advanced Technology (ITMA), Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia.
| | - Mohamad Amran Mohd Salleh
- Department of Chemical and Environmental Engineering, Faculty of Engineering, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia.
| | - Kamaruzaman Sijam
- Department of Plant Protection, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia
| | - Raha Abdul Rahim
- Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia
| | - Afshin Mohsenifar
- Research and Development Department, Nanozino, 16536-43181 Tehran, Iran
| | - Reza Safarnejad
- Department of Plant Viruses, Iranian Institute of Plant Protection, Tehran, Iran
| | - Meisam Tabatabaei
- Nanosystems Research Team (NRTeam), Microbial Biotechnology and Biosafety Dept., Agricultural Biotechnology Research Institute of Iran (ABRII), Karaj, Iran
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31
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Taghdisi SM, Danesh NM, Ramezani M, Abnous K. A novel M-shape electrochemical aptasensor for ultrasensitive detection of tetracyclines. Biosens Bioelectron 2016; 85:509-514. [PMID: 27213268 DOI: 10.1016/j.bios.2016.05.048] [Citation(s) in RCA: 97] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2016] [Revised: 05/09/2016] [Accepted: 05/14/2016] [Indexed: 11/25/2022]
Abstract
Analytical techniques for detection and quantitation of tetracyclines in food products are greatly in demand. In this study, a novel electrochemical aptasensor was designed for ultrasensitive and selective detection of tetracyclines, based on M-shape structure of aptamer (Apt)-complementary strands of aptamer (CSs) complex, exonuclease I (Exo I) and gold electrode. The aptasensor was developed to make a noticeable electrochemical difference in the absence and presence of tetracycline. In the absence of tetracycline, the M-shape structure, which acts as a gate and barrier for the access of redox probe to the surface of gold electrode remains intact, leading to a weak electrochemical signal. Upon addition of tetracycline, Apt leaves CSs, resulting in disassembly of M-shape structure and following the addition of Exo I, a strong electrochemical signal was observed. The developed analytical assay indicated high selectivity toward tetracycline with a limit of detection (LOD) as low as 450 pM. Moreover, the designed aptasensor was effectively used for the detection of tetracycline in milk and serum samples with LODs of 740 and 710 pM, respectively.
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Affiliation(s)
- Seyed Mohammad Taghdisi
- Targeted Drug Delivery Research Center, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Noor Mohammad Danesh
- Nanotechnology Research Center, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran; Research Institute of Sciences and New Technology, Mashhad, Iran
| | - Mohammad Ramezani
- Nanotechnology Research Center, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Khalil Abnous
- Pharmaceutical Research Center, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran.
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Satarpai T, Shiowatana J, Siripinyanond A. Paper-based analytical device for sampling, on-site preconcentration and detection of ppb lead in water. Talanta 2016; 154:504-10. [PMID: 27154707 DOI: 10.1016/j.talanta.2016.04.017] [Citation(s) in RCA: 53] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2016] [Revised: 04/04/2016] [Accepted: 04/05/2016] [Indexed: 11/17/2022]
Abstract
A simple and cost effectiveness procedure based on a paper based analytical device (PAD) for sampling, on-site preconcentration and determination of Pb(II) in water samples was developed. The inkjet printing method was used for patterning of PAD. Colorimetric assay was developed on a PAD for Pb(II) detection in µgL(-1) level. This µgL(-1) level detection limit was achieved by in situ- and on-site preconcentration of Pb(II) onto adsorption filter paper disc with a home-made holder before color development. Water sample was loaded onto a circular filter paper coated with zirconium silicate in 3% sodium carboxymethylcellulose for Pb(II) preconcentration. Subsequently, sodium rhodizonate in tartrate buffer solution (pH 2.8) was used as colorimetric reagent for direct Pb(II) detection on a PAD. Detection was achieved by measuring the pink color and recorded by scanner or digital camera. ImageJ software was used for measuring grey scale values. The calibration curve was linear in the range of 10µgL(-1) and 100µgL(-1), with a detection limit of 10µgL(-1). The developed method was successfully applied to the determination of Pb(II) in drinking water, tap water and surface water near electronic waste storage and the results were compared with those by graphite furnace atomic absorption spectroscopy (GF-AAS) with good agreement.
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Affiliation(s)
- Thiphol Satarpai
- Department of Chemistry and Center for Innovation in Chemistry, Faculty of Science, Mahidol University, Rama VI Road, Bangkok 10400, Thailand
| | - Juwadee Shiowatana
- Department of Chemistry and Center for Innovation in Chemistry, Faculty of Science, Mahidol University, Rama VI Road, Bangkok 10400, Thailand
| | - Atitaya Siripinyanond
- Department of Chemistry and Center for Innovation in Chemistry, Faculty of Science, Mahidol University, Rama VI Road, Bangkok 10400, Thailand.
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Taghdisi SM, Danesh NM, Nameghi MA, Ramezani M, Abnous K. A label-free fluorescent aptasensor for selective and sensitive detection of streptomycin in milk and blood serum. Food Chem 2016; 203:145-149. [PMID: 26948599 DOI: 10.1016/j.foodchem.2016.02.017] [Citation(s) in RCA: 68] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2015] [Revised: 09/07/2015] [Accepted: 02/01/2016] [Indexed: 01/13/2023]
Abstract
Sensitive and fast detection of antibiotic residues in animal derived foods and blood serum is of great interest. In this study a fluorescent aptasensor was designed for selective and sensitive detection of streptomycin (STR) based on Exonuclease III (Exo III), SYBR Gold and aptamer complimentary strand. In the absence of STR, the fluorescence intensity is weak. Upon addition of STR, the aptamer binds to its target, leading to release of complementary strand from aptamer and more protection against Exo III function. Following addition of SYBR Gold, a strong fluorescence intensity is obtained. This aptasensor showed a high selectivity toward STR with a limit of detection (LOD) as low as 54.5 nM. The validity of the procedure and applicability of the aptasensor were successfully assessed by detection of STR in a spiked milk and blood serum without interference from the sample matrix.
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Affiliation(s)
- Seyed Mohammad Taghdisi
- Targeted Drug Delivery Research Center, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Noor Mohammad Danesh
- Research Institute of Sciences and New Technology, Mashhad, Iran; Nanotechnology Research Center, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran
| | | | - Mohammad Ramezani
- Nanotechnology Research Center, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran.
| | - Khalil Abnous
- Pharmaceutical Research Center, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran.
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34
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Taghdisi SM, Danesh NM, Emrani AS, Ramezani M, Abnous K. A novel electrochemical aptasensor based on single-walled carbon nanotubes, gold electrode and complimentary strand of aptamer for ultrasensitive detection of cocaine. Biosens Bioelectron 2015; 73:245-250. [PMID: 26086444 DOI: 10.1016/j.bios.2015.05.065] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2015] [Revised: 05/24/2015] [Accepted: 05/29/2015] [Indexed: 01/21/2023]
Abstract
Cocaine is a strong central nervous system stimulant and one of the most commonly abused drugs. In this study, an electrochemical aptasensor was designed for sensitive and selective detection of cocaine, based on single-walled carbon nanotubes (SWNTs), gold electrode and complimentary strand of aptamer (CS). This electrochemical aptasensor inherits properties of SWNTs and gold such as large surface area and high electrochemical conductivity, as well as high affinity and selectivity of aptamer toward its target and the stronger interaction of SWNTs with single-stranded DNA (ssDNA) than double-stranded DNA (dsDNA). In the absence of cocaine, a little amount of SWNTs bind to Aptamer-CS-modified electrode, so that the electrochemical signal is weak. In the presence of cocaine, aptamer binds to cocaine, leaves the surface of electrode. So that, a large amount of SWNTs bind to CS-modified electrode, generating to a strong electrochemical signal. The designed electrochemical aptasensor showed good selectivity toward cocaine with a limit of detection (LOD) as low as 105 pM. Moreover, the fabricated electrochemical aptasensor was successfully applied to detect cocaine in serum with a LOD as low as 136 pM.
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Affiliation(s)
- Seyed Mohammad Taghdisi
- Targeted drug delivery Research Center, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Noor Mohammad Danesh
- Nanotechnology Research Center, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran; Research Institute of Sciences and New Technology, Mashhad, Iran
| | | | - Mohammad Ramezani
- Nanotechnology Research Center, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran.
| | - Khalil Abnous
- Pharmaceutical Research Center, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran.
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Emrani AS, Danesh NM, Lavaee P, Ramezani M, Abnous K, Taghdisi SM. Colorimetric and fluorescence quenching aptasensors for detection of streptomycin in blood serum and milk based on double-stranded DNA and gold nanoparticles. Food Chem 2015. [PMID: 26212949 DOI: 10.1016/j.foodchem.2015.05.079] [Citation(s) in RCA: 108] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Antibiotic residues in animal foodstuffs are of great concern to consumers. In this study, fluorescence quenching and colorimetric aptasensors were designed for detection of streptomycin based on aqueous gold nanoparticles (AuNPs) and double-stranded DNA (dsDNA). In the absence of streptomycin, aptamer/FAM-labeled complementary strand dsDNA is stable, resulting in the aggregation of AuNPs by salt and an obvious color change from red to blue and strong emission of fluorescence. In the presence of streptomycin, aptamer binds to its target and FAM-labeled complementary strand adsorbs on the surface of AuNPs. So the well-dispersed AuNPs remain stable against salt-induced aggregation with a wine-red color and the fluorescence of FAM-labeled complimentary strand is efficiently quenched by AuNPs. The colorimetric and fluorescence quenching aptasensors showed excellent selectivity toward streptomycin with limit of detections as low as 73.1 and 47.6 nM, respectively. The presented aptasensors were successfully used to detect streptomycin in milk and serum.
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Affiliation(s)
| | - Noor Mohammad Danesh
- Nanotechnology Research Center, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran; Research Institute of Sciences and New Technology, Mashhad, Iran
| | - Parirokh Lavaee
- Department of Chemistry, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Mohammad Ramezani
- Nanotechnology Research Center, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Khalil Abnous
- Pharmaceutical Research Center, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran.
| | - Seyed Mohammad Taghdisi
- Targeted Drug Delivery Research Center, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran.
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A novel colorimetric triple-helix molecular switch aptasensor for ultrasensitive detection of tetracycline. Biosens Bioelectron 2015; 70:181-7. [PMID: 25814407 DOI: 10.1016/j.bios.2015.03.040] [Citation(s) in RCA: 143] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2014] [Revised: 02/26/2015] [Accepted: 03/16/2015] [Indexed: 01/26/2023]
Abstract
Detection methods of antibiotic residues in blood serum and animal derived foods are of great interest. In this study a colorimetric aptasensor was designed for sensitive, selective and fast detection of tetracycline based on triple-helix molecular switch (THMS) and gold nanoparticles (AuNPs). As a biosensor, THMS shows distinct advantages including high stability, sensitivity and preserving the selectivity and affinity of the original aptamer. In the absence of tetracycline, THMS is stable, leading to the aggregation of AuNPs by salt and an obvious color change from red to blue. In the presence of tetracycline, aptamer binds to its target, signal transduction probe (STP) leaves the THMS and adsorbs on the surface of AuNPs. So the well-dispersed AuNPs remain stable against salt-induced aggregation with a red color. The presented aptasensor showed high selectivity toward tetracyclines with a limit of detection as low as 266 pM for tetracycline. The designed aptasensor was successfully applied to detect tetracycline in serum and milk.
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Khandare DG, Joshi H, Banerjee M, Majik MS, Chatterjee A. An aggregation-induced emission based “turn-on” fluorescent chemodosimeter for the selective detection of Pb2+ ions. RSC Adv 2014. [DOI: 10.1039/c4ra09451d] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
An aggregation-induced emission (AIE) based “turn-on” fluorescent chemodosimeter for selective detection of Pb2+ ions has been developed. The probe is a phosphate functionalized tetraphenylethylene derivative and the resulting lead–TPE complex has very low solubility in working solvent and triggers AIE and shows a low detection limit of 10 ppb.
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Affiliation(s)
| | | | | | - Mahesh S. Majik
- Bio-organic Chemistry Laboratory
- CSIR-National Institute of Oceanography
- Dona-Paula, India
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