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Oslan SNH, Yusof NY, Lim SJ, Ahmad NH. Rapid and sensitive detection of Salmonella in agro-Food and environmental samples: A review of advances in rapid tests and biosensors. J Microbiol Methods 2024; 219:106897. [PMID: 38342249 DOI: 10.1016/j.mimet.2024.106897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Revised: 02/07/2024] [Accepted: 02/08/2024] [Indexed: 02/13/2024]
Abstract
Salmonella is as an intracellular bacterium, causing many human fatalities when the host-specific serotypes reach the host gastrointestinal tract. Nontyphoidal Salmonella are responsible for numerous foodborne outbreaks and product recalls worldwide whereas typhoidal Salmonella are responsible for Typhoid fever cases in developing countries. Yet, Salmonella-related foodborne disease outbreaks through its food and water contaminations have urged the advancement of rapid and sensitive Salmonella-detecting methods for public health protection. While conventional detection methods are time-consuming and ineffective for monitoring foodstuffs with short shelf lives, advances in microbiology, molecular biology and biosensor methods have hastened the detection. Here, the review discusses Salmonella pathogenic mechanisms and its detection technology advancements (fundamental concepts, features, implementations, efficiency, benefits, limitations and prospects). The time-efficiency of each rapid test method is discussed in relation to their limit of detections (LODs) and time required from sample enrichment to final data analysis. Importantly, the matrix effects (LODs and sample enrichments) were compared within the methods to potentially speculate Salmonella detection from environmental, clinical or food matrices using certain techniques. Although biotechnological advancements have led to various time-efficient Salmonella-detecting techniques, one should consider the usage of sophisticated equipment to run the analysis by moderately to highly trained personnel. Ultimately, a fast, accurate Salmonella screening that is readily executed by untrained personnels from various matrices, is desired for public health procurement.
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Affiliation(s)
- Siti Nur Hazwani Oslan
- Faculty of Food Science and Nutrition, Universiti Malaysia Sabah, Jalan UMS, Kota Kinabalu 88400, Sabah, Malaysia; Food Security Research Laboratory, Faculty of Food Science and Nutrition, Universiti Malaysia Sabah, Jalan UMS, 88400 Kota Kinabalu, Sabah, Malaysia.
| | - Nik Yusnoraini Yusof
- Institute for Research in Molecular Medicine (INFORMM), Universiti Sains Malaysia, 16150 Kubang Kerian, Kelantan, Malaysia
| | - Si Jie Lim
- Enzyme Technology and X-ray Crystallography Laboratory, VacBio 5, Institute of Bioscience, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia; Enzyme and Microbial Technology (EMTech) Research Centre, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
| | - Nurul Hawa Ahmad
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia; Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
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2
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Rojas-Sánchez E, Jiménez-Soto M, Barquero-Calvo E, Duarte-Martínez F, Mollenkopf DF, Wittum TE, Muñoz-Vargas L. Prevalence Estimation, Antimicrobial Susceptibility, and Serotyping of Salmonella enterica Recovered from New World Non-Human Primates ( Platyrrhini), Feed, and Environmental Surfaces from Wildlife Centers in Costa Rica. Antibiotics (Basel) 2023; 12:antibiotics12050844. [PMID: 37237747 DOI: 10.3390/antibiotics12050844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 04/20/2023] [Accepted: 04/26/2023] [Indexed: 05/28/2023] Open
Abstract
Concern about zoonoses and wildlife has increased. Few studies described the role of wild mammals and environments in the epidemiology of Salmonella. Antimicrobial resistance is a growing problem associated with Salmonella that threatens global health, food security, the economy, and development in the 21st century. The aim of this study is to estimate the prevalence and identify antibiotic susceptibility profiles and serotypes of non-typhoidal Salmonella enterica recovered from non-human primate feces, feed offered, and surfaces in wildlife centers in Costa Rica. A total of 180 fecal samples, 133 environmental, and 43 feed samples from 10 wildlife centers were evaluated. We recovered Salmonella from 13.9% of feces samples, 11.3% of environmental, and 2.3% of feed samples. Non-susceptibility profiles included six isolates from feces (14.6%): four non-susceptible isolates (9.8%) to ciprofloxacin, one (2.4%) to nitrofurantoin, and one to both ciprofloxacin and nitrofurantoin (2.4%). Regarding the environmental samples, one profile was non-susceptible to ciprofloxacin (2.4%) and two to nitrofurantoin (4.8%). The serotypes identified included Typhimurium/I4,[5],12:i:-, S. Braenderup/Ohio, S. Newport, S. Anatum/Saintpaul, and S. Westhampton. The epidemiological surveillance of Salmonella and antimicrobial resistance can serve in the creation of strategies for the prevention of the disease and its dissemination throughout the One Health approach.
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Affiliation(s)
- Ernesto Rojas-Sánchez
- Laboratorio de Salud Pública e Inocuidad de Alimentos, Programa de Investigación en Enfermedades Tropicales (PIET), Escuela de Medicina Veterinaria, Universidad Nacional, Heredia 40104, Costa Rica
- Hospital de Especies Menores y Silvestres, Escuela de Medicina Veterinaria, Universidad Nacional, Heredia 40104, Costa Rica
| | - Mauricio Jiménez-Soto
- Hospital de Especies Menores y Silvestres, Escuela de Medicina Veterinaria, Universidad Nacional, Heredia 40104, Costa Rica
| | - Elias Barquero-Calvo
- Laboratorio de Bacteriología, Programa de Investigación en Enfermedades Tropicales (PIET), Escuela de Medicina Veterinaria, Universidad Nacional, Heredia 40104, Costa Rica
| | - Francisco Duarte-Martínez
- Laboratorio de Genómica y Biología Molecular, Centro Nacional de Referencia de Inocuidad Microbiológica de Alimentos, Instituto Costarricense de Investigación y Enseñanza en Nutrición y Salud, Cartago 30301, Costa Rica
| | - Dixie F Mollenkopf
- Department of Veterinary Preventive Medicine, The Ohio State University College of Veterinary Medicine, Columbus, OH 43210, USA
| | - Thomas E Wittum
- Department of Veterinary Preventive Medicine, The Ohio State University College of Veterinary Medicine, Columbus, OH 43210, USA
| | - Lohendy Muñoz-Vargas
- Laboratorio de Salud Pública e Inocuidad de Alimentos, Programa de Investigación en Enfermedades Tropicales (PIET), Escuela de Medicina Veterinaria, Universidad Nacional, Heredia 40104, Costa Rica
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Khan JA, Rathore RS, Ahmad I, Gill R, Husain FM, Arshad M, Alam P, Albalawi T, Al-Kheraif A, Akhtar J, Albarakaty FM, Neyaz LA, Elbanna K, Abulreesh HH. Assessment of Foodborne Bacterial Pathogens in Buffalo Raw Milk Using Polymerase Chain Reaction Based Assay. Foodborne Pathog Dis 2022; 19:750-757. [PMID: 36301255 DOI: 10.1089/fpd.2022.0044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
Milk is a putrescible commodity that is extremely prone to microbial contamination. Primarily, milk and dairy products are believed to be easily contaminated by pathogenic microorganisms, including Listeria monocytogenes, Salmonella spp., and Staphylococcus aureus. The microbiological quality of raw milk and dairy products regarding foodborne pathogens is of paramount importance due to concern of human health. In this study 400 buffalo raw milk samples were screened for assessing the prevalence of L. monocytogenes, Salmonella spp., and S. aureus. This study implemented uniplex-polymerase chain reaction (u-PCR) and multiplex-polymerase chain reaction (m-PCR) assays for the fast simultaneous detection of these pathogens comparing to the conventional culturing methods. Raw milk samples were found contaminated with the prevalence of 2.2%, 4.0%, and 14.2% for L. monocytogenes, Salmonella spp., and S. aureus, respectively. These pathogens were detected with the optimized polymerase chain reaction assays after 6 h of enrichment. u-PCR and m-PCR demonstrated the limit of detection as 104, 102, and 10 cells/mL after 6, 12, 18, and 24 h for each culture of the pathogens. A high sensitivity (10 colony-forming unit [CFU]/mL) of the m-PCR protocol was noted. The developed protocol is a cost-effective and rapid method for the simultaneous detection of pathogens associated with raw milk and dairy industries.
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Affiliation(s)
- Javed Ahamad Khan
- Department of Natural Resource Management, Bedele Campus of Agriculture and Forestry, Mettu University, Bedele, Ethiopia
| | - Ram Swaroop Rathore
- Division of Veterinary Public Health, Indian Veterinary Research Institute, Bareilly, India
| | - Iqbal Ahmad
- Department of Agricultural Microbiology, Faculty of Agricultural Sciences, Aligarh Muslim University, Aligarh, India
| | - Rubina Gill
- Department of Agronomy, School of Agriculture, Lovely Professional University, Phagwara, India
| | - Fohad Mabood Husain
- Department of Food Science and Nutrition, King Saud University, Riyadh, Saudi Arabia
| | - Mohammed Arshad
- Dental Biomaterials Research Chair, Dental Health Department, College of Applied Medical Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Pravej Alam
- Department of Biology, College of Science and Humanities, Prince Sattam bin Abdulaziz University, Al-Kharj, Saudi Arabia
| | - Thamer Albalawi
- Department of Biology, College of Science and Humanities, Prince Sattam bin Abdulaziz University, Al-Kharj, Saudi Arabia
| | - Abdulaziz Al-Kheraif
- Dental Biomaterials Research Chair, Dental Health Department, College of Applied Medical Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Javeed Akhtar
- Department of Chemical Engineering, Adigrat University, Adigrat, Ethiopia
| | - Fawziah M Albarakaty
- Department of Biology, Faculty of Applied Science, Umm Al-Qura University, Makkah, Saudi Arabia
| | - Leena A Neyaz
- Department of Biology, Faculty of Applied Science, Umm Al-Qura University, Makkah, Saudi Arabia
| | - Khaled Elbanna
- Department of Biology, Faculty of Applied Science, Umm Al-Qura University, Makkah, Saudi Arabia.,Department of Agricultural Microbiology, Faculty of Agriculture, Fayoum University, Fayoum, Egypt
| | - Hussein H Abulreesh
- Department of Biology, Faculty of Applied Science, Umm Al-Qura University, Makkah, Saudi Arabia
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Retamal P, Gaspar J, Benavides MB, Saenz L, Galarce N, Aravena T, Cornejo J, Lapierre L. Virulence and antimicrobial resistance factors in Salmonella enterica serotypes isolated from pigs and chickens in central Chile. Front Vet Sci 2022; 9:971246. [PMID: 36204291 PMCID: PMC9530323 DOI: 10.3389/fvets.2022.971246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Accepted: 08/31/2022] [Indexed: 11/13/2022] Open
Abstract
Salmonella enterica is a food-borne pathogen with a wide host-range that during decades has been of public health concern in developed and developing countries. In Chile, the poultry and pig industries represent the biggest contribution of meat consumption in the population, and sanitary regulations have been imposed for Salmonella control. The aim of this work was to determine and characterize Salmonella strains isolated from pigs and chicken raised on commercials farms in Chile. For this, isolates belonging to pigs (n = 46) and poultry (n = 57) were genotyped by two multiplex PCR reactions and virulotyped by the PCR detection of virulence-associated genes. In addition, isolates were serotyped and analyzed by the Kirby Bauer assay to determine their antimicrobial resistance phenotypes. From these analyses 52 genotypes, six serotypes and several multidrug resistance phenotypes and different combinations of virulence-associated genes were detected. These results suggest that S. enterica in pigs and poultry in central Chile should be monitored due to potential consequences in public and animal health.
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Affiliation(s)
- Patricio Retamal
- Departamento de Medicina Preventiva Animal, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, Santiago, Chile
| | - Joaquim Gaspar
- Departamento de Medicina Preventiva Animal, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, Santiago, Chile
- Magister en Ciencias Animales y Veterinarias, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, Santiago, Chile
| | - María Belén Benavides
- Departamento de Medicina Preventiva Animal, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, Santiago, Chile
- Magister en Ciencias Animales y Veterinarias, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, Santiago, Chile
| | - Leonardo Saenz
- Departamento de Ciencias Biológicas, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, Santiago, Chile
| | - Nicolás Galarce
- Escuela de Medicina Veterinaria, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
| | - Trinidad Aravena
- Departamento de Medicina Preventiva Animal, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, Santiago, Chile
| | - Javiera Cornejo
- Departamento de Medicina Preventiva Animal, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, Santiago, Chile
- Javiera Cornejo
| | - Lisette Lapierre
- Departamento de Medicina Preventiva Animal, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, Santiago, Chile
- *Correspondence: Lisette Lapierre
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Arnold K, Lim S, Rakler T, Rovira A, Satuchne C, Yechezkel E, Wiseman A, Pima Y, Yakunin E, Rokney A, Elnekave E. Using genetic markers for detection and subtyping of the emerging Salmonella enterica subspecies enterica serotype Muenchen. Poult Sci 2022; 101:102181. [PMID: 36215738 PMCID: PMC9554807 DOI: 10.1016/j.psj.2022.102181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Revised: 09/08/2022] [Accepted: 09/08/2022] [Indexed: 11/30/2022] Open
Abstract
Non-typhoidal Salmonella (NTS) poses a global threat to public health. Poultry, one of the main reservoirs of NTS, is usually not clinically affected by most NTS, yet the economic losses to the poultry industry due to control and mitigation efforts, and due to negative publicity can be tremendous. NTS strains are routinely characterized into serotypes in a time-consuming, labor-intensive multistep process that requires skilled personnel. Moreover, the discriminatory power of serotyping is limited compared to other subtyping methods. Whole-genome sequence data enable the identification of genetic variation within serotypes. However, sequencing is often limited by available resources, and analyzing and interpreting the genetic data may be time-consuming. Source tracing during epidemiological outbreak investigations requires rapid and efficient characterization of strains to control pathogen spread. Here we designed a multiplex polymerase chain reaction (PCR) assay for the detection of genetic variants of Salmonella Muenchen, a serotype that has emerged in Israel in the last 3 yr in both clinical human cases and different hosts. Test sensitivity of 99.21% and specificity of 94 to 100% were determined using in-silico PCR with a dataset of 18,282 NTS assemblies from 37 NTS serotypes. Similarly, test sensitivity of 100% and specificity of 96.2 to 100% were determined in-vitro with 120 NTS isolates of 52 serotypes. Moreover, the test enabled differentiation between the common sequence types of serotype Muenchen using both approaches. As opposed to traditional serotyping and other subtyping methods, the designed test allows for rapid and cost-efficient detection of the emerging S. Muenchen serotype and its variants in a single step. Future development of similar assays for other dominant serotypes may help reduce the time and cost required for detection and initial characterization of dominant NTS strains. Overall, these tests will be beneficial to both public health and for reducing of the economic losses to the poultry industry due to NTS infections.
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Gopinath GR, Jang H, Beaubrun JJG, Gangiredla J, Mammel MK, Müller A, Tamber S, Patel IR, Ewing L, Weinstein LM, Wang CZ, Finkelstein S, Negrete F, Muruvanda T, Allard M, Sockett DC, Pagotto F, Tall BD, Stephan R. Phylogenomic Analysis of Salmonella enterica subsp. enterica Serovar Bovismorbificans from Clinical and Food Samples Using Whole Genome Wide Core Genes and kmer Binning Methods to Identify Two Distinct Polyphyletic Genome Pathotypes. Microorganisms 2022; 10:microorganisms10061199. [PMID: 35744717 PMCID: PMC9228720 DOI: 10.3390/microorganisms10061199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Revised: 05/31/2022] [Accepted: 06/01/2022] [Indexed: 12/04/2022] Open
Abstract
Salmonella enterica subsp. enterica serovar Bovismorbificans has caused multiple outbreaks involving the consumption of produce, hummus, and processed meat products worldwide. To elucidate the intra-serovar genomic structure of S. Bovismorbificans, a core-genome analysis with 2690 loci (based on 150 complete genomes representing Salmonella enterica serovars developed as part of this study) and a k-mer-binning based strategy were carried out on 95 whole genome sequencing (WGS) assemblies from Swiss, Canadian, and USA collections of S. Bovismorbificans strains from foodborne infections. Data mining of a digital DNA tiling array of legacy SARA and SARB strains was conducted to identify near-neighbors of S. Bovismorbificans. The core genome analysis and the k-mer-binning methods identified two polyphyletic clusters, each with emerging evolutionary properties. Four STs (2640, 142, 1499, and 377), which constituted the majority of the publicly available WGS datasets from >260 strains analyzed by k-mer-binning based strategy, contained a conserved core genome backbone with a different evolutionary lineage as compared to strains comprising the other cluster (ST150). In addition, the assortment of genotypic features contributing to pathogenesis and persistence, such as antimicrobial resistance, prophage, plasmid, and virulence factor genes, were assessed to understand the emerging characteristics of this serovar that are relevant clinically and for food safety concerns. The phylogenomic profiling of polyphyletic S. Bovismorbificans in this study corresponds to intra-serovar variations observed in S. Napoli and S. Newport serovars using similar high-resolution genomic profiling approaches and contributes to the understanding of the evolution and sequence divergence of foodborne Salmonellae. These intra-serovar differences may have to be thoroughly understood for the accurate classification of foodborne Salmonella strains needed for the uniform development of future food safety mitigation strategies.
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Affiliation(s)
- Gopal R. Gopinath
- Center of Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD 20708, USA; (H.J.); (J.J.-G.B.); (J.G.); (M.K.M.); (I.R.P.); (L.E.); (L.M.W.); (C.Z.W.); (S.F.); (F.N.); (B.D.T.)
- Correspondence: ; Tel.: +1-240-402-3612
| | - Hyein Jang
- Center of Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD 20708, USA; (H.J.); (J.J.-G.B.); (J.G.); (M.K.M.); (I.R.P.); (L.E.); (L.M.W.); (C.Z.W.); (S.F.); (F.N.); (B.D.T.)
| | - Junia Jean-Gilles Beaubrun
- Center of Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD 20708, USA; (H.J.); (J.J.-G.B.); (J.G.); (M.K.M.); (I.R.P.); (L.E.); (L.M.W.); (C.Z.W.); (S.F.); (F.N.); (B.D.T.)
- Biological Analysis Division, Public Health Command Europe Laboratory Sciences, Room 102, Bldg 3810, Kirchberg Kaserne, RP 66849 Landstuhl, Germany
| | - Jayanthi Gangiredla
- Center of Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD 20708, USA; (H.J.); (J.J.-G.B.); (J.G.); (M.K.M.); (I.R.P.); (L.E.); (L.M.W.); (C.Z.W.); (S.F.); (F.N.); (B.D.T.)
| | - Mark K. Mammel
- Center of Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD 20708, USA; (H.J.); (J.J.-G.B.); (J.G.); (M.K.M.); (I.R.P.); (L.E.); (L.M.W.); (C.Z.W.); (S.F.); (F.N.); (B.D.T.)
| | - Andrea Müller
- Institute for Food Safety and Hygiene, University of Zurich, CH-8057 Zurich, Switzerland; (A.M.); (R.S.)
| | - Sandeep Tamber
- Food Directorate, Bureau of Microbial Hazards/Health Canada, Ottawa, ON K1A 0K9, Canada; (S.T.); (F.P.)
| | - Isha R. Patel
- Center of Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD 20708, USA; (H.J.); (J.J.-G.B.); (J.G.); (M.K.M.); (I.R.P.); (L.E.); (L.M.W.); (C.Z.W.); (S.F.); (F.N.); (B.D.T.)
| | - Laura Ewing
- Center of Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD 20708, USA; (H.J.); (J.J.-G.B.); (J.G.); (M.K.M.); (I.R.P.); (L.E.); (L.M.W.); (C.Z.W.); (S.F.); (F.N.); (B.D.T.)
| | - Leah M. Weinstein
- Center of Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD 20708, USA; (H.J.); (J.J.-G.B.); (J.G.); (M.K.M.); (I.R.P.); (L.E.); (L.M.W.); (C.Z.W.); (S.F.); (F.N.); (B.D.T.)
| | - Caroline Z. Wang
- Center of Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD 20708, USA; (H.J.); (J.J.-G.B.); (J.G.); (M.K.M.); (I.R.P.); (L.E.); (L.M.W.); (C.Z.W.); (S.F.); (F.N.); (B.D.T.)
| | - Samantha Finkelstein
- Center of Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD 20708, USA; (H.J.); (J.J.-G.B.); (J.G.); (M.K.M.); (I.R.P.); (L.E.); (L.M.W.); (C.Z.W.); (S.F.); (F.N.); (B.D.T.)
| | - Flavia Negrete
- Center of Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD 20708, USA; (H.J.); (J.J.-G.B.); (J.G.); (M.K.M.); (I.R.P.); (L.E.); (L.M.W.); (C.Z.W.); (S.F.); (F.N.); (B.D.T.)
| | - Tim Muruvanda
- Center of Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park, MD 20740, USA; (T.M.); (M.A.)
| | - Marc Allard
- Center of Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park, MD 20740, USA; (T.M.); (M.A.)
| | - Donald C. Sockett
- Wisconsin Veterinary Diagnostic Laboratory, University of Wisconsin-Madison, Madison, WI 53706, USA;
| | - Franco Pagotto
- Food Directorate, Bureau of Microbial Hazards/Health Canada, Ottawa, ON K1A 0K9, Canada; (S.T.); (F.P.)
| | - Ben D. Tall
- Center of Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD 20708, USA; (H.J.); (J.J.-G.B.); (J.G.); (M.K.M.); (I.R.P.); (L.E.); (L.M.W.); (C.Z.W.); (S.F.); (F.N.); (B.D.T.)
| | - Roger Stephan
- Institute for Food Safety and Hygiene, University of Zurich, CH-8057 Zurich, Switzerland; (A.M.); (R.S.)
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Identification and Subtyping of Salmonella Isolates Using Matrix-Assisted Laser Desorption–Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF). Microorganisms 2022; 10:microorganisms10040688. [PMID: 35456741 PMCID: PMC9025770 DOI: 10.3390/microorganisms10040688] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 03/14/2022] [Accepted: 03/16/2022] [Indexed: 11/22/2022] Open
Abstract
Subtyping of bacterial isolates of the same genus and species is an important tool in epidemiological investigations. A number of phenotypic and genotypic subtyping methods are available; however, most of these methods are labor-intensive and time-consuming and require considerable operator skill and a wealth of reagents. Matrix-Assisted Laser Desorption–Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF), an alternative to conventional subtyping methods, offers a rapid, reproducible method for bacterial identification with a high sensitivity and specificity and at minimal cost. The purpose of this study was to determine the feasibility of using MALDI-TOF to differentiate between six Salmonella serovars recovered from experimental microcosms inoculated with known strains of Salmonella. Following the establishment of a MALDI-TOF reference library for this project, the identity of 843 Salmonella isolates recovered from these microcosms was assessed using both MALDI-TOF and conventional methods (serotyping/PCR). All 843 isolates were identified as being Salmonella species. Overall, 803/843 (95%) of these isolates were identified similarly using the two different methods. Positive percent agreement at the serovar level ranged from 79 to 100%, and negative percent agreement for all serovars was greater than 98%. Cohen’s kappa ranged from 0.85 to 0.98 for the different serovars. This study demonstrates that MALDI-TOF is a viable alternative for the rapid identification and differentiation of Salmonella serovars.
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Babu US, Harrison LM, Patel IR, Mammel MK, Bigley E, Balan KV. Development and validation of an improved method for the detection of Salmonella in cinnamon bark and oregano leaves using the adsorbent beta zeolite in the pre-enrichment media. Food Microbiol 2021; 100:103852. [PMID: 34416956 DOI: 10.1016/j.fm.2021.103852] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Revised: 05/20/2021] [Accepted: 06/03/2021] [Indexed: 11/29/2022]
Abstract
The detection of Salmonella in spices is challenging due to the presence of antibacterial components. In this study, we evaluated the use of an adsorbent beta zeolite in pre-enrichment media to improve the recovery of Salmonella from cinnamon bark and oregano leaves. Samples (25 g) were spiked with varying levels of S. Montevideo or S. Senftenberg. After 2 weeks of stabilization at RT, betazeolite was added to cinnamon and oregano samples prior to the addition of 225 mL or 475 mL of pre-enrichment media, respectively. Detection sensitivity and rate of the test method were compared to the FDA Bacteriological Analytical Manual (BAM) method which requires the use of 2.5 L pre-enrichment broth. While Salmonella could not be detected in the test method using the reduced volume of pre-enrichment media alone, the addition of beta zeolite resulted in a positivity rate of 62% and 72.6% for cinnamon bark and oregano leaves respectively (all spike levels and both serovars combined). Furthermore, while there were differences in the LOD50 compared to the BAM method, there was no significant difference in the minimum level of detection between the betazeolite and the BAM methods. Our results demonstrate that the use of betazeolite in the pre-enrichment media offers a method with reduced media volumes without compromising on the sensitivity or efficiency of Salmonella detection in cinnamon bark and oregano leaves.
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Affiliation(s)
- Uma S Babu
- Office of Applied Research and Safety Assessment, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD, United States
| | - Lisa M Harrison
- Office of Applied Research and Safety Assessment, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD, United States
| | - Isha R Patel
- Office of Applied Research and Safety Assessment, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD, United States
| | - Mark K Mammel
- Office of Applied Research and Safety Assessment, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD, United States
| | - Elmer Bigley
- Office of Applied Research and Safety Assessment, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD, United States
| | - Kannan V Balan
- Office of Applied Research and Safety Assessment, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD, United States.
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9
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Maidin NNM, Buyong MR, Rahim RA, Mohamed MA. Dielectrophoresis applications in biomedical field and future perspectives in biomedical technology. Electrophoresis 2021; 42:2033-2059. [PMID: 34346062 DOI: 10.1002/elps.202100043] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2020] [Revised: 07/25/2021] [Accepted: 07/27/2021] [Indexed: 11/09/2022]
Abstract
Dielectrophoresis (DEP) is a technique to manipulate trajectories of polarisable particles in non-uniform electric fields by utilising unique dielectric properties. The manipulation of a cell using DEP has been demonstrated in various modes, thereby indicating potential applications in the biomedical field. In this review, recent DEP applications in the biomedical field are discussed. This review is intended to highlight research work that shows significant approach related to dielectrophoresis application in biomedical field reported between 2016 and 2020. Firstly, single-shell model and multiple-shell model of cells are introduced. Current device structures and recently introduced electrode patterns for DEP applications are discussed. Secondly, the biomedical uses of DEP in liquid biopsies, stem cell therapies, and diagnosis of infectious diseases due to bacteria and viruses are presented. Finally, the challenges in DEP research are discussed, and the reported solutions are explained. DEP's potential research directions are mentioned. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Nur Nasyifa Mohd Maidin
- Institute of Microengineering and Nanoelectronic (IMEN), Universiti Kebangsaan Malaysia (UKM), Bangi, Selangor, 43600, Malaysia
| | - Muhamad Ramdzan Buyong
- Institute of Microengineering and Nanoelectronic (IMEN), Universiti Kebangsaan Malaysia (UKM), Bangi, Selangor, 43600, Malaysia
| | - Ruslinda A Rahim
- Institute of Nano Electronic Engineering (INEE), Universiti Malaysia Perlis (UniMAP), Kangar, Perlis, 01000, Malaysia.,National Nanotechnology Centre (NNC), Ministry of Science Technology and Innovation (MOSTI), Federal Government Administrative Centre, Putrajaya, 62662, Malaysia
| | - Mohd Ambri Mohamed
- Institute of Microengineering and Nanoelectronic (IMEN), Universiti Kebangsaan Malaysia (UKM), Bangi, Selangor, 43600, Malaysia
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10
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Ye Q, Shang Y, Chen M, Pang R, Li F, Xiang X, Zhou B, Wang C, Zhang S, Zhang J, Wang J, Xue L, Ding Y, Wu Q. Mining and evaluating novel serovar-specific Salmonella C1 serogroup genes by polymerase chain reaction analysis. Lebensm Wiss Technol 2021. [DOI: 10.1016/j.lwt.2020.110821] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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11
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Ye Q, Shang Y, Chen M, Pang R, Li F, Xiang X, Wang C, Zhou B, Zhang S, Zhang J, Yang X, Xue L, Ding Y, Wu Q. Identification of Novel Sensitive and Reliable Serovar-Specific Targets for PCR Detection of Salmonella Serovars Hadar and Albany by Pan-Genome Analysis. Front Microbiol 2021; 12:605984. [PMID: 33815306 PMCID: PMC8011537 DOI: 10.3389/fmicb.2021.605984] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Accepted: 02/22/2021] [Indexed: 01/16/2023] Open
Abstract
The accurate and rapid classification of Salmonella serovars is an essential focus for the identification of isolates involved in disease in humans and animals. The purpose of current research was to identify novel sensitive and reliable serovar-specific targets and to develop PCR method for Salmonella C2 serogroups (O:8 epitopes) in food samples to facilitate timely treatment. A total of 575 genomic sequences of 16 target serovars belonging to serogroup C2 and 150 genomic sequences of non-target serovars were analysed by pan-genome analysis. As a result, four and three specific genes were found for serovars Albany and Hadar, respectively. Primer sets for PCR targeting these serovar-specific genes were designed and evaluated based on their specificity; the results showed high specificity (100%). The sensitivity of the specific PCR was 2.8 × 101–103 CFU/mL and 2.3 × 103–104 CFU/mL for serovars Albany and Hadar, respectively, and the detection limits were 1.04 × 103–104 CFU/g and 1.16 × 104–105 CFU/g in artificially contaminated raw pork samples. Furthermore, the potential functions of these serovar-specific genes were analysed; all of the genes were functionally unknown, except for one specific serovar Albany gene known to be a encoded secreted protein and one specific gene for serovars Hadar and Albany that is a encoded membrane protein. Thus, these findings demonstrate that pan-genome analysis is a precious method for mining new high-quality serovar-targets for PCR assays or other molecular methods that are highly sensitive and can be used for rapid detection of Salmonella serovars.
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Affiliation(s)
- Qinghua Ye
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, China
| | - Yuting Shang
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, China
| | - Moutong Chen
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, China
| | - Rui Pang
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, China
| | - Fan Li
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, China
| | - Xinran Xiang
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, China
| | - Chufang Wang
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, China
| | - Baoqing Zhou
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, China
| | - Shuhong Zhang
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, China
| | - Jumei Zhang
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, China
| | - Xiaojuan Yang
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, China
| | - Liang Xue
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, China
| | - Yu Ding
- Department of Food Science & Technology, Jinan University, Institute of Food Safety & Nutrition, Jinan University, Guangzhou, China
| | - Qingping Wu
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, China
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12
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Salazar-Llorente E, Morales M, Sornoza I, Mariduena-Zavala MG, Gu G, Nou X, Ortiz J, Maldonado-Alvarado P, Cevallos-Cevallos JM. Microbiological Quality of High-Demand Food from Three Major Cities in Ecuador. J Food Prot 2021; 84:128-138. [PMID: 33411929 DOI: 10.4315/jfp-20-271] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2020] [Accepted: 09/07/2020] [Indexed: 11/11/2022]
Abstract
ABSTRACT Bacterial foodborne diseases are among the most important public health issues worldwide, but in Ecuador, reports on the microbiological quality of food are scarce. In this cross-sectional study, 450 samples of high-demand Ecuadorian food, including bolon, encebollado, sauces, ceviche, fruit, fruit juice, fruit salad, cheese, raw chicken, and ground beef, were collected from popular street markets in the cities of Guayaquil, Quito, and Cuenca. Populations of total aerobic mesophilic bacteria, total coliforms, fecal coliforms, Escherichia coli, Salmonella enterica, and Listeria monocytogenes were examined on composited samples by plate count following the local regulations (Norma Tecnica Ecuatoriana, Instituto Ecuatoriano de Normalización) for each kind of food. The individual and interaction effects of the city and food type on the levels of each bacterial group were assessed by two-way analysis of variance. Selected colonies from each culture were identified using Biolog OmniLog ID and sequencing of the V3 to V4 region on the 16S rRNA gene. Average total aerobic mesophilic bacteria, total coliform, fecal coliform, and E. coli levels were 5.10 ± 0.12, 2.50 ± 0.16, 1.09 ± 0.12, and 0.83 ± 0.12 log CFU/g or mL, respectively, with significant variations among the cities. The prevalence of Salmonella in chicken and sauces and L. monocytogenes in cheese and fruit salad was greater than 20%. Opportunistic pathogens including Klebsiella pneumoniae, Staphylococcus sciuri, and Enterococcus spp. were frequently identified in the samples from all three cities. High prevalence of spoilage microorganisms such as Bacillus amyloliquefaciens and biocontrol bacteria such as Lactococcus lactis was also observed. This is the first report on the microbiological quality of food from Ecuador. HIGHLIGHTS
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Affiliation(s)
- Enrique Salazar-Llorente
- Escuela Superior Politécnica del Litoral (ESPOL), Centro de Investigaciones Biotecnológicas del Ecuador
| | - Maria Morales
- ESPOL, Facultad de Ingeniería Mecánica y Ciencias de la Produccion, U.S. Department of Agriculture Agricultural Research Service, Beltsville, Maryland, USA
| | - Ivette Sornoza
- ESPOL, Facultad de Ingeniería Mecánica y Ciencias de la Produccion, U.S. Department of Agriculture Agricultural Research Service, Beltsville, Maryland, USA
| | | | - Ganyu Gu
- Environmental Microbiology and Food Safety Laboratory, U.S. Department of Agriculture Agricultural Research Service, Beltsville, Maryland, USA
| | - Xiangwu Nou
- Environmental Microbiology and Food Safety Laboratory, U.S. Department of Agriculture Agricultural Research Service, Beltsville, Maryland, USA
| | - Johana Ortiz
- Department of Biosciences, Food Nutrition and Health Research Unit, Faculty of Chemical Sciences, Cuenca University, Cuenca, Ecuador
| | - Pedro Maldonado-Alvarado
- Escuela Politécnica Nacional, Departamento de Alimentos y Biotecnología, P.O. Box 17-01-2759, Quito, Ecuador
| | - Juan Manuel Cevallos-Cevallos
- Escuela Superior Politécnica del Litoral (ESPOL), Centro de Investigaciones Biotecnológicas del Ecuador.,(ORCID: https://orcid.org/0000-0003-4609-7998 [J.M.C.C.]).,ESPOL, Facultad de Ciencias de la Vida, Campus Gustavo Galindo, Km. 30.5 Vía Perimetral, P.O. Box 09-01-5863, Guayaquil, Ecuador
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13
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Camba SI, Del Valle FP, Umali DV, Soma T, Shirota K, Katoh H, Sasai K. The Expanded Role of Roof-Rats ( Rattus rattus) in Salmonella spp. Contamination of a Commercial Layer Farm in East Japan. Avian Dis 2020; 64:46-52. [PMID: 32267124 DOI: 10.1637/0005-2086-64.1.46] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2019] [Accepted: 11/18/2019] [Indexed: 11/05/2022]
Abstract
Rodents serve as amplifiers of Salmonella infections in poultry flocks and can serve as a source of Salmonella contamination in the environment even after thorough cleaning and disinfection. This study aims to determine the dynamics of Salmonella occurrence in rodents and its relation to Salmonella contamination in the layer farm environment, including air dusts and eggs. From 2008 to 2017, roof rats (Rattus rattus), environmental swabs, air dusts, and eggs were collected from an intensive commercial layer farm in East Japan and were tested for Salmonella spp. using standard procedures. In roof rat samples, the Salmonella isolation rate was reached at 10% (95% confidence interval [CI] 8.1-21.9) in which Salmonella Corvallis, Salmonella Infantis, Salmonella Potsdam, and Salmonella Mbandaka were the frequent isolates from the cecal portion of the intestines. On the other hand, the prevalence rate of Salmonella in environmental swabs was at 5.1% (95% CI 2.2-7.4) while air dusts were at 0.9% (95% CI 0.2-1.8). It was observed that the prevalence of predominant Salmonella serotypes shifted over time; in roof rats, it was noted that Salmonella Potsdam gradually replaced Salmonella Infantis. In environmental swabs and eggs, Salmonella Corvallis and Salmonella Potsdam increased significantly while Salmonella Infantis became less frequent. In air dusts, Salmonella Corvallis was observed to decrease and Salmonella Potsdam became more common. Based on our findings, the role of roof rats in the epidemiology of Salmonella in layer farms was expanded from being a reservoir and an amplifier host into a shifting vessel of the most predominant serotypes.
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Affiliation(s)
- Sherwin I Camba
- Poultry Products Quality Control Co. (PPQC Co. Ltd) 125-7 Daiwa Dakeonsen, Nihonmatsu, Fukushima 964-0062, Japan.,Department of Veterinary Clinical Science, Graduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-58 Rinku-oraikita, Izumisano, Osaka 598-8531, Japan
| | - Fletcher P Del Valle
- Poultry Products Quality Control Co. (PPQC Co. Ltd) 125-7 Daiwa Dakeonsen, Nihonmatsu, Fukushima 964-0062, Japan.,Department of Veterinary Clinical Science, Graduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-58 Rinku-oraikita, Izumisano, Osaka 598-8531, Japan
| | - Dennis V Umali
- Department of Veterinary Clinical Sciences, College of Veterinary Medicine, University of the Philippines-Los Baños, College, Laguna 4031, Philippines
| | - Takehisa Soma
- Veterinary Diagnostic Laboratory, Marupi Lifetech Co., Ltd., 103 Fushiocho, Ikeda, Osaka 563-0011, Japan
| | - Kazutoshi Shirota
- Poultry Products Quality Control Co. (PPQC Co. Ltd) 125-7 Daiwa Dakeonsen, Nihonmatsu, Fukushima 964-0062, Japan
| | - Hiromitsu Katoh
- Poultry Products Quality Control Co. (PPQC Co. Ltd) 125-7 Daiwa Dakeonsen, Nihonmatsu, Fukushima 964-0062, Japan.,Department of Veterinary Clinical Sciences, College of Veterinary Medicine, University of the Philippines-Los Baños, College, Laguna 4031, Philippines.,Department of Veterinary Clinical Science, Graduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-58 Rinku-oraikita, Izumisano, Osaka 598-8531, Japan
| | - Kazumi Sasai
- Department of Veterinary Clinical Science, Graduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-58 Rinku-oraikita, Izumisano, Osaka 598-8531, Japan,
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14
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Topalcengiz Z, Spanninger PM, Jeamsripong S, Persad AK, Buchanan RL, Saha J, LeJEUNE J, Jay-Russell MT, Kniel KE, Danyluk MD. Survival of Salmonella in Various Wild Animal Feces That May Contaminate Produce. J Food Prot 2020; 83:651-660. [PMID: 32221570 DOI: 10.4315/0362-028x.jfp-19-302] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Accepted: 12/09/2019] [Indexed: 11/11/2022]
Abstract
ABSTRACT Heightened concerns about wildlife on produce farms and possible introduction of pathogens to the food supply have resulted in required actions following intrusion events. The purpose of this study was to evaluate the survival of Salmonella in feces from cattle and various wild animals (feral pigs, waterfowl, deer, and raccoons) in California, Delaware, Florida, and Ohio. Feces were inoculated with rifampin-resistant Salmonella enterica cocktails that included six serotypes: Typhimurium, Montevideo, Anatum, Javiana, Braenderup, and Newport (104 to 106 CFU/g). Fecal samples were stored at ambient temperature. Populations were enumerated for up to 1 year (364 days) by spread plating onto tryptic soy agar supplemented with rifampin. When no colonies were detected, samples were enriched. Colonies were banked on various sampling days based on availability of serotyping in each state. During the 364-day storage period, Salmonella populations decreased to ≤2.0 log CFU/g by day 84 in pig, waterfowl, and raccoon feces from all states. Salmonella populations in cattle and deer feces were 3.3 to 6.1 log CFU/g on day 336 or 364; however, in Ohio Salmonella was not detected after 120 days. Salmonella serotypes Anatum, Braenderup, and Javiana were the predominant serotypes throughout the storage period in all animal feces and states. Determination of appropriate risk mitigation strategies following animal intrusions can improve our understanding of pathogen survival in animal feces. HIGHLIGHTS
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Affiliation(s)
- Zeynal Topalcengiz
- Department of Food Engineering, Faculty of Engineering and Architecture, Muş Alparslan University, Muş 49250, Turkey (ORCID: https://orcid.org/0000-0002-2113-7319 [Z.T.]).,Department of Food Science and Human Nutrition, Citrus Research and Education Center, University of Florida, Lake Alfred, Florida 33850, USA
| | - Patrick M Spanninger
- Department of Animal and Food Sciences, University of Delaware, Newark, Delaware 19716, USA
| | - Saharuetai Jeamsripong
- Western Center for Food Safety, University of California, Davis, California 95618, USA.,Department of Veterinary Public Health, Faculty of Veterinary Science, Chulalongkorn University, Bangkok 10330, Thailand
| | - Anil K Persad
- School of Veterinary Medicine, Faculty of Medical Sciences, University of the West Indies, St. Augustine, Eric Williams Medical Sciences Complex, Mount Hope, Trinidad and Tobago.,Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster, Ohio 44691, USA
| | - Robert L Buchanan
- Department of Nutrition and Food Science and Center for Food Safety and Security Systems, University of Maryland, College Park, Maryland 20742, USA
| | - Joyjit Saha
- Department of Food Science and Human Nutrition, Citrus Research and Education Center, University of Florida, Lake Alfred, Florida 33850, USA
| | - Jeff LeJEUNE
- Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster, Ohio 44691, USA
| | - Michele T Jay-Russell
- Western Center for Food Safety, University of California, Davis, California 95618, USA.,(ORCID: https://orcid.org/0000-0001-9849-8086 [M.T.J.R.])
| | - Kalmia E Kniel
- Department of Animal and Food Sciences, University of Delaware, Newark, Delaware 19716, USA
| | - Michelle D Danyluk
- Department of Food Science and Human Nutrition, Citrus Research and Education Center, University of Florida, Lake Alfred, Florida 33850, USA
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15
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Zhu Z, Huang Q, Hong X, Chen X, Lu Y, Chen Z, Wang C, Meng X, Xu Q, Li S. Isolation and characterization of Salmonella in pork samples collected from retail and wholesale markets in each season from 2016 to 2018 in Wuhan, China. J Appl Microbiol 2019; 128:875-883. [PMID: 31710755 DOI: 10.1111/jam.14515] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Revised: 10/27/2019] [Accepted: 11/03/2019] [Indexed: 01/08/2023]
Abstract
AIMS To investigate the prevalence and characteristics of Salmonella in pork on sale in Wuhan, Central China. METHODS AND RESULTS A total of 4744 pork samples were collected from retail or wholesale markets in each season from 2016 to 2018. The samples showed an overall Salmonella prevalence of 19·54% (927/4744), among which the samples collected in 2017 (21·67%, 428/1975) possessed a significantly higher prevalence than those collected in 2016 (18·61%, 209/1123) (P = 0·047) or 2018 (17·51%, 290/1656) (P = 0·002), and the samples collected in winter showed the lowest prevalence (15·86%, 177/1116). The Salmonella prevalence was significantly higher among samples from retail markets (25·68%, 283/1102) than wholesale markets (17·68%, 644/3642) (P = 0·000). Antimicrobial resistance of 922 Salmonella strains was tested by determining the minimal inhibitory concentrations using a broth microdilution method. The strains revealed that 98·92% (912/922) were resistant to at least one of the antimicrobial agents, and 80·04% (738/922) were resistant to three or more antimicrobials (MDR). Resistance to sulfamethoxazole/trimethoprim (89·91%), tetracycline (87·20%) and ampicillin (71·69%) was predominant. The proportion of MDR strains in 2017 (93·62%, 396/423) was significantly higher than that in 2016 (63·16%, 132/209) (P = 0·000) or 2018 (69·66%, 202/290) (P = 0·000). No significant difference was observed in the proportions of MDR strains between wholesale markets (76·07%, 213/280) and retail markets (80·53%, 517/642) (P = 0·075). Multi-locus sequence typing for 554 of the isolates revealed 20 different sequence types (STs), among which ST40 (38·27%, 212/554), ST34 (18·41%, 102/554) and ST469 (14·46%, 79/554) were dominant. CONCLUSIONS A high risk of Salmonella prevalence and antimicrobial resistance was observed in pork in Wuhan. The risk varies between different sampling years, seasons and market types. SIGNIFICANCE AND IMPACT OF THE STUDY Providing baseline data on Salmonella contamination in pork on sale in Central China.
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Affiliation(s)
- Z Zhu
- Key Laboratory of Preventive Veterinary Medicine in Hubei Province, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, P.R. China
| | - Q Huang
- Key Laboratory of Preventive Veterinary Medicine in Hubei Province, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, P.R. China
| | - X Hong
- Key Laboratory of Preventive Veterinary Medicine in Hubei Province, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, P.R. China
| | - X Chen
- Key Laboratory of Preventive Veterinary Medicine in Hubei Province, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, P.R. China
| | - Y Lu
- Key Laboratory of Preventive Veterinary Medicine in Hubei Province, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, P.R. China
| | - Z Chen
- Wuhan Agricultural Comprehensive Law Enforcement Inspector Corps, Wuhan, P.R. China
| | - C Wang
- Wuhan Agricultural Comprehensive Law Enforcement Inspector Corps, Wuhan, P.R. China
| | - X Meng
- Key Laboratory of Preventive Veterinary Medicine in Hubei Province, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, P.R. China
| | - Q Xu
- Key Laboratory of Preventive Veterinary Medicine in Hubei Province, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, P.R. China
| | - S Li
- Key Laboratory of Preventive Veterinary Medicine in Hubei Province, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, P.R. China
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16
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Benahmed F, Wang H, Beaubrun JJG, Gopinath GR, Cheng CM, Hanes DE, Hammack TS, Rasmussen M, Davidson MK. Detection of Salmonella enterica subsp. enterica Serovar Cubana from Naturally Contaminated Chick Feed. J Food Prot 2017; 80:1815-1820. [PMID: 28981377 DOI: 10.4315/0362-028x.jfp-16-344] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Because some significant outbreaks of human salmonellosis have been traced to contaminated animal feed, the rapid and efficient detection of Salmonella in feed is essential. However, the current U.S. Food and Drug Administration Bacteriological Analytical Manual (BAM) culture method that uses lactose broth as a preenrichment medium has not reliably supported the results of real-time PCR assays for certain foods. We evaluated the BAM culture method and a quantitative real-time PCR (qPCR) assay using two preenrichment media, modified buffered peptone water and lactose broth, to detect Salmonella enterica subsp. enterica serovar Cubana in naturally contaminated chick feed. After 24 h of incubation, the qPCR method was as sensitive as the culture method when modified buffered peptone water was used as the preenrichment medium but less sensitive than culture when lactose broth was used. After 48 h of incubation, detection of Salmonella Cubana by qPCR and by culture in either preenrichment medium was equivalent. We also compared the performance of the traditional serotyping method, which uses pure cultures of Salmonella grown on blood agar, to two molecular serotyping methods. The serotyping method based on whole genome sequencing also requires pure cultures, but the PCR-based molecular serotyping method can be done directly with the enriched culture medium. The PCR-based molecular serotyping method provided simple and rapid detection and identification of Salmonella Cubana. However, whole genome sequencing allows accurate identification of many Salmonella serotypes and highlights variations in the genomes, even in tight genomic clusters. We also compared the genome of the chick feed isolate with 58 Salmonella Cubana strains in GenBank and found that the chick feed isolate was very closely related to an isolate from a foodborne outbreak involving alfalfa sprouts.
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Affiliation(s)
- Faiza Benahmed
- 1 U.S. Food and Drug Administration, Center for Veterinary Medicine, Division of Animal and Food Microbiology, Laurel, Maryland 20708
| | - Hua Wang
- 2 U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, Division of Microbiology, College Park, Maryland 20740
| | - Junia Jean-Gilles Beaubrun
- 3 U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, Division of Virulence Assessment, Laurel, Maryland 20708; and
| | - Gopal R Gopinath
- 3 U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, Division of Virulence Assessment, Laurel, Maryland 20708; and
| | - Chorng-Ming Cheng
- 4 U.S. Food and Drug Administration, Pacific Regional Laboratory Southwest, Irvine, California 92612, USA (retired)
| | - Darcy E Hanes
- 3 U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, Division of Virulence Assessment, Laurel, Maryland 20708; and
| | - Thomas S Hammack
- 2 U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, Division of Microbiology, College Park, Maryland 20740
| | - Mark Rasmussen
- 1 U.S. Food and Drug Administration, Center for Veterinary Medicine, Division of Animal and Food Microbiology, Laurel, Maryland 20708
| | - Maureen K Davidson
- 1 U.S. Food and Drug Administration, Center for Veterinary Medicine, Division of Animal and Food Microbiology, Laurel, Maryland 20708
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17
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Jean-Gilles Beaubrun J, Ewing L, Dudley K, Benhamed F, Wang H, Hanes DE. Evaluation of a multiplex PCR method to serotype Salmonella in animal feeds pre-enrichment broth cultures. MethodsX 2017; 4:335-345. [PMID: 29872638 PMCID: PMC5986982 DOI: 10.1016/j.mex.2017.09.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2016] [Revised: 07/29/2017] [Accepted: 09/08/2017] [Indexed: 11/26/2022] Open
Abstract
The identification of Salmonella enterica serotypes remains a highly important public health concern for microbiological analysis of foods, feeds, and clinical samples. Outbreaks of human salmonellosis are sometimes linked to contact with infected animals and animal feeds. To possibly reduce the number of outbreaks, it is important to rapidly, efficiently detect Salmonella enterica in animal feeds and food products. A multiplex PCR for molecular serotyping of Salmonella enterica previously used in a single lab validation study for serotyping in multiple human food matrices was used in this investigation to evaluate the effectiveness of the multiplex PCR assay as serotyping method and screening tool for Salmonella in animal feeds. This approach is unique in that: •The multiplex PCR serotyping assay may be used for rapid screening and serotyping of Salmonella enterica from contaminated animal feed at the non-selective pre-enrichment step.•The assay may provide the serotype or identification of Salmonella in positive samples at concentration as low as 10 CFU/25 g after a 24 h non-selective pre-enrichment step.•In addition to the ability to serotype, this assay contains invA as an internal control for Salmonella positive identification. The invA shows positive indication for Salmonella outside of the 30 serotypic banding patterns.
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Affiliation(s)
- Junia Jean-Gilles Beaubrun
- U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, Laurel, MD 207081, United States
| | - Laura Ewing
- U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, Laurel, MD 207081, United States
| | - Kim Dudley
- U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, Laurel, MD 207081, United States
| | - Faiza Benhamed
- U.S. Food and Drug Administration, Center for Veterinary Medicine, Laurel, MD 20708, United States
| | - Hua Wang
- U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, MD 20740, United States
| | - Darcy E. Hanes
- U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, Laurel, MD 207081, United States
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18
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Zappelini L, Martone-Rocha S, Dropa M, Matté MH, Tiba MR, Breternitz BS, Razzolini MTP. Effective characterization of Salmonella Enteritidis by most probable number (MPN) followed by multiplex polymerase chain reaction (PCR) methods. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017; 24:4828-4834. [PMID: 27987122 DOI: 10.1007/s11356-016-8109-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2016] [Accepted: 11/14/2016] [Indexed: 06/06/2023]
Abstract
Nontyphoidal Salmonella (NTS) is a relevant pathogen involved in gastroenteritis outbreaks worldwide. In this study, we determined the capacity to combine the most probable number (MPN) and multiplex polymerase chain reaction (PCR) methods to characterize the most important Salmonella serotypes in raw sewage. A total of 499 isolates were recovered from 27 raw sewage samples and screened using two previously described multiplex PCR methods. From those, 123 isolates were selected based on PCR banding pattern-identical or similar to Salmonella Enteritidis and Salmonella Typhimurium-and submitted to conventional serotyping. Results showed that both PCR assays correctly serotyped Salmonella Enteritidis, however, they presented ambiguous results for Salmonella Typhimurium identification. These data highlight that MPN and multiplex PCR can be useful methods to describe microbial quality in raw sewage and suggest two new PCR patterns for Salmonella Enteritidis identification.
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Affiliation(s)
- Lincohn Zappelini
- Department of Environmental Health, School of Public Health, University of São Paulo, São Paulo, SP, Brazil.
| | - Solange Martone-Rocha
- Department of Environmental Health, School of Public Health, University of São Paulo, São Paulo, SP, Brazil
| | - Milena Dropa
- Department of Environmental Health, School of Public Health, University of São Paulo, São Paulo, SP, Brazil
| | - Maria Helena Matté
- Department of Public Health Practice, School of Public Health, University of São Paulo, São Paulo, SP, Brazil
| | - Monique Ribeiro Tiba
- Center of Enteric Diseases and Special Pathogens Infections, Bacteriology Center, Adolfo Lutz Institute, São Paulo, SP, Brazil
| | - Bruna Suellen Breternitz
- Department of Environmental Health, School of Public Health, University of São Paulo, São Paulo, SP, Brazil
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19
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Jean-Gilles Beaubrun J, Tall BD, Flamer ML, Patel I, Gopinath G, Auguste W, Jean C, George M, Tartera C, Ewing L, Hanes DE. Increased secretion of exopolysaccharide and virulence potential of a mucoid variant of Salmonella enterica serovar Montevideo under environmental stress. Microb Pathog 2016; 103:107-113. [PMID: 28012986 DOI: 10.1016/j.micpath.2016.12.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2015] [Revised: 12/07/2016] [Accepted: 12/08/2016] [Indexed: 11/16/2022]
Abstract
During an investigation to increase the recovery of Salmonella enterica from Oregano, an increased expression of exopolysaccharide was induced in Salmonella serovar Montevideo. The atypical mucoid (SAL242S) and the non-mucoid (SAL242) strains of Montevideo were compared and characterized using various methods. Serotyping analysis demonstrated that both strains are the same serovar Montevideo. Electron microscopy (EM) of cultured SAL242S cells revealed the production of a prominent EPS-like structure enveloping aggregates of cells that are composed of cellulose. Mucoid cells possessed a higher binding affinity for Calcofluor than that of the non-mucoid strain. Genotypic analysis revealed no major genomic differences between these morphotypes, while expression analyses using a DNA microarray shows that the mucoid variant exhibited heightened expression of genes encoding proteins produced by the SPI-1 type III secretion system. This increased expression of SPI1 genes may play a role in protecting Salmonella from environmental stressors. Based on these observations, Salmonella serovar Montevideo mucoid variant under stressful or low-nutrient environments presented atypical growth patterns and phenotypic changes, as well as an upregulated expression of virulence factors. These findings are significant in the understanding of survival abilities of Salmonella in a various food matrices.
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Affiliation(s)
| | - Ben D Tall
- U.S. Food and Drug Administration, Laurel, MD 20708, United States
| | - M-L Flamer
- U.S. Food and Drug Administration, Laurel, MD 20708, United States; UMCP JIFSAN Program, 5201 Paint Branch Pkwy Patapsco Building Suite 2134, University of Maryland, College Park 20742, United States
| | - I Patel
- U.S. Food and Drug Administration, Laurel, MD 20708, United States
| | - G Gopinath
- U.S. Food and Drug Administration, Laurel, MD 20708, United States
| | - Winny Auguste
- U.S. Food and Drug Administration, Laurel, MD 20708, United States; Frostburg State University, 101 Braddock Rd, Frostburg MD 21532, United States
| | - Catherine Jean
- U.S. Food and Drug Administration, Laurel, MD 20708, United States; Branch High School 14121 Old Columbia Pike, Burtonsville MD 20866, United States
| | - Melvin George
- U.S. Food and Drug Administration, Laurel, MD 20708, United States; Branch High School 14121 Old Columbia Pike, Burtonsville MD 20866, United States
| | - Carmen Tartera
- U.S. Food and Drug Administration, Laurel, MD 20708, United States
| | - L Ewing
- U.S. Food and Drug Administration, Laurel, MD 20708, United States
| | - D E Hanes
- U.S. Food and Drug Administration, Laurel, MD 20708, United States
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20
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Jean-Gilles Beaubrun J, Flamer ML, Addy N, Ewing L, Gopinath G, Jarvis K, Grim C, Hanes DE. Evaluation of corn oil as an additive in the pre-enrichment step to increase recovery of Salmonella enterica from oregano. Food Microbiol 2016; 57:195-203. [PMID: 27052719 DOI: 10.1016/j.fm.2016.03.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2015] [Revised: 01/26/2016] [Accepted: 03/09/2016] [Indexed: 10/22/2022]
Abstract
Phenolic compounds associated with essential oils of spices and herbs possess a variety of antioxidant and antimicrobial properties that interfere with Salmonella detection from fresh and dried products. Finding a compound to neutralize the effect of these antimicrobial compounds, while allowing Salmonella growth during pre-enrichment, is a crucial step in both traditional pathogen isolation and molecular detection from these foods. This study evaluated the effectiveness of corn oil as a component of the pre-enrichment broth to counteract antimicrobial compounds properties and increase the recovery of Salmonella from spices. Oregano samples artificially contaminated with Salmonella enterica were pre-enriched in modified Buffered Peptone Water (mBPW) supplemented with and without 2% (vol/vol) corn oil respectively. Samples were incubated overnight at 37 °C. The results showed that recovery of Salmonella from oregano samples was increased by ≥50% when pre-enriched with corn oil. Serovars were confirmed using a PCR serotyping method. In addition, shot-gun metagenomics analyses demonstrated bacterial diversity and the effect of corn oil on the relative prevalence of Salmonella in the oregano samples. Modifying pre-enrichment broths with corn oil improved the detection and isolation of Salmonella from oregano, and may provide an alternative method for pathogen detection in dried food matrices such as spices.
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Affiliation(s)
| | - Marie-Laure Flamer
- U.S. Food and Drug Administration, Laurel, MD, 20708, USA; UMCP JIFSAN Program, 5201 Paint Branch Pkwy Patapsco Building Suite 2134, University of Maryland, College Park, 20742, USA
| | - Nicole Addy
- U.S. Food and Drug Administration, Laurel, MD, 20708, USA; Oak Ridge Institute for Science and Technology, Oak Ridge, TN, USA
| | - Laura Ewing
- U.S. Food and Drug Administration, Laurel, MD, 20708, USA
| | - Gopal Gopinath
- U.S. Food and Drug Administration, Laurel, MD, 20708, USA
| | - Karen Jarvis
- U.S. Food and Drug Administration, Laurel, MD, 20708, USA
| | - Chris Grim
- U.S. Food and Drug Administration, Laurel, MD, 20708, USA; Oak Ridge Institute for Science and Technology, Oak Ridge, TN, USA
| | - Darcy E Hanes
- U.S. Food and Drug Administration, Laurel, MD, 20708, USA
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21
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Blaylock M, Blackwell R, Merid S, Jackson S, Kotewicz M, Gopinath G, Ayers SL, Abbott J, Sabo J, Ewing L, Gangiredla J, Gebru S, Patel I, Jones B, Dudley K, Jarvis K, Hanes DE, Diallo AA, Jean-Gilles Beaubrun J. Comparison of Salmonella enterica serovar Bovismorbificans 2011 hummus outbreak strains with non-outbreak strains. Food Microbiol 2015; 46:627-634. [DOI: 10.1016/j.fm.2014.02.016] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2013] [Revised: 02/04/2014] [Accepted: 02/18/2014] [Indexed: 10/25/2022]
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22
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Manios SG, Grivokostopoulos NC, Bikouli VC, Doultsos DA, Zilelidou EA, Gialitaki MA, Skandamis PN. A 3-year hygiene and safety monitoring of a meat processing plant which uses raw materials of global origin. Int J Food Microbiol 2014; 209:60-9. [PMID: 25600954 DOI: 10.1016/j.ijfoodmicro.2014.12.028] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2014] [Revised: 12/09/2014] [Accepted: 12/23/2014] [Indexed: 01/08/2023]
Abstract
A systematic approach in monitoring the hygiene of a meat processing plant using classical microbiological analyses combined with molecular characterization tools may assist in the safety of the final products. This study aimed: (i) to evaluate the total hygiene level and, (ii) to monitor and characterize the occurrence and spread of Salmonella spp. and Listeria monocytogenes in the environment and the final products of a meat industry that processes meat of global origin. In total, 2541 samples from the processing environment, the raw materials, and the final products were collected from a Greek meat industry in the period 2011-2013. All samples were subjected to enumeration of total viable counts (TVC), Escherichia coli (EC) and total coliforms (TCC) and the detection of Salmonella spp., while 709 of these samples were also analyzed for the presence L. monocytogenes. Pathogen isolates were serotyped and further characterized for their antibiotic resistance and subtyped by PFGE. Raw materials were identified as the primary source of contamination, while improper handling might have also favored the proliferation of the initial microbial load. The occurrence of Salmonella spp. and L. monocytogenes reached 5.5% and 26.9%, respectively. Various (apparent) cross-contamination or persistence trends were deduced based on PFGE analysis results. Salmonella isolates showed wide variation in their innate antibiotic resistance, contrary to L. monocytogenes ones, which were found susceptible to all antibiotics except for cefotaxime. The results emphasize the biodiversity of foodborne pathogens in a meat industry and may be used by meat processors to understand the spread of pathogens in the processing environment, as well as to assist the Food Business Operator (FBO) in establishing effective criteria for selection of raw materials and in improving meat safety and quality. This approach can limit the increase of microbial contamination during the processing steps observed in our study as well as the cross contamination of meat products.
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Affiliation(s)
- Stavros G Manios
- Agricultural University of Athens, Department of Food Science & Technology, Laboratory of Food Hygiene and Quality Control, Iera Odos 75, Athens 11855, Greece
| | - Nikolaos C Grivokostopoulos
- Agricultural University of Athens, Department of Food Science & Technology, Laboratory of Food Hygiene and Quality Control, Iera Odos 75, Athens 11855, Greece
| | - Vasiliki C Bikouli
- Agricultural University of Athens, Department of Food Science & Technology, Laboratory of Food Hygiene and Quality Control, Iera Odos 75, Athens 11855, Greece
| | - Dimitrios A Doultsos
- Agricultural University of Athens, Department of Food Science & Technology, Laboratory of Food Hygiene and Quality Control, Iera Odos 75, Athens 11855, Greece
| | - Evangelia A Zilelidou
- Agricultural University of Athens, Department of Food Science & Technology, Laboratory of Food Hygiene and Quality Control, Iera Odos 75, Athens 11855, Greece
| | - Maria A Gialitaki
- Agricultural University of Athens, Department of Food Science & Technology, Laboratory of Food Hygiene and Quality Control, Iera Odos 75, Athens 11855, Greece
| | - Panagiotis N Skandamis
- Agricultural University of Athens, Department of Food Science & Technology, Laboratory of Food Hygiene and Quality Control, Iera Odos 75, Athens 11855, Greece.
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23
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Jean-Gilles Beaubrun J, Ewing L, Jarvis K, Dudley K, Grim C, Gopinath G, Flamer ML, Auguste W, Jayaram A, Elmore J, Lamont M, McGrath T, Hanes D. Comparison of a PCR serotyping assay, Check&Trace assay for Salmonella, and Luminex Salmonella serotyping assay for the characterization of Salmonella enterica identified from fresh and naturally contaminated cilantro. Food Microbiol 2014; 42:181-7. [DOI: 10.1016/j.fm.2014.02.008] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2013] [Revised: 12/09/2013] [Accepted: 02/11/2014] [Indexed: 10/25/2022]
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24
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Diversity of Salmonella isolates from central Florida surface waters. Appl Environ Microbiol 2014; 80:6819-27. [PMID: 25172861 DOI: 10.1128/aem.02191-14] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Identification of Salmonella serotypes is important for understanding the environmental diversity of the genus Salmonella. This study evaluates the diversity of Salmonella isolates recovered from 165 of 202 Central Florida surface water samples and investigates whether the serotype of the environmental Salmonella isolates can be predicted by a previously published multiplex PCR assay (S. Kim, J. G. Frye, J. Hu, P. J. Fedorka-Cray, R. Gautom, and D. S. Boyle, J. Clin. Microbiol. 44:3608-3615, 2006, http://dx.doi.org/10.1128/JCM.00701-06). Multiplex PCR was performed on 562 Salmonella isolates (as many as 36 isolates per water sample) to predict serotypes. Kauffmann-White serogrouping was used to confirm multiplex PCR pattern groupings before isolates were serotyped, analyzed by pulsed-field gel electrophoresis, and assayed for antimicrobial susceptibility. In 41.2% of the Salmonella-positive water samples, all Salmonella isolates had identical multiplex PCR patterns; in the remaining 58.8%, two or more multiplex PCR patterns were identified. Within each sample, isolates with matching multiplex PCR patterns had matching serogroups. The multiplex patterns of 495 isolates (88.1%) did not match any previously reported pattern. The remaining 68 isolates matched reported patterns but did not match the serotypes for those patterns. The use of the multiplex PCR allowed the number of isolates requiring further analysis to be reduced to 223. Thirty-three Salmonella enterica serotypes were identified; the most frequent included serotypes Muenchen, Rubislaw, Anatum, Gaminara, and IV_50:z4,z23:-. A majority (141/223) of Salmonella isolates clustered into one genotypic group. Salmonella isolates in Central Florida surface waters are serotypically, genotypically, and phenotypically (in terms of antimicrobial susceptibility) diverse. While isolates could be grouped as different or potentially the same using multiplex PCR, the multiplex PCR pattern did not predict the Salmonella serotype.
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25
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Chen J, Shi X, Gehring AG, Paoli GC. Automated immunomagnetic separation for the detection of Escherichia coli O157:H7 from spinach. Int J Food Microbiol 2014; 179:33-7. [DOI: 10.1016/j.ijfoodmicro.2014.03.022] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2013] [Revised: 03/17/2014] [Accepted: 03/18/2014] [Indexed: 11/17/2022]
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26
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Whole-Genome Sequencing of Salmonella enterica subsp. enterica Serovar Cubana Strains Isolated from Agricultural Sources. GENOME ANNOUNCEMENTS 2014; 2:2/1/e01184-13. [PMID: 24459266 PMCID: PMC3900898 DOI: 10.1128/genomea.01184-13] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
We report the draft genomes of Salmonella enterica subsp. enterica serovar Cubana strain CVM42234, isolated from chick feed in 2012, and S. Cubana strain 76814, isolated from swine in 2004. The genome sizes are 4,975,046 and 4,936,251 bp, respectively.
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27
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Tall BD, Chen Y, Yan Q, Gopinath GR, Grim CJ, Jarvis KG, Fanning S, Lampel KA. Cronobacter: an emergent pathogen causing meningitis to neonates through their feeds. Sci Prog 2014; 97:154-72. [PMID: 25108996 PMCID: PMC10365370 DOI: 10.3184/003685014x13994743930498] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The recognition of Cronobacter as a public health concern was raised when powdered infant formula (PIF) was linked to several neonatal meningitis outbreaks. It is an opportunistic pathogen that causes necrotising enterocolitis, infantile septicaemia, and meningitis which carries a high mortality rate among neonates. It has been also linked with cases of infection in adults and elderly. Over the past decade, much focus has been made on developing sensitive and specific characterisation, detection, and isolation methods to ascertain the quality of foods, notably contamination of PIF with Cronobacter and to understand its ability to cause disease. Whole genome sequencing has unveiled several putative virulence factors, yet the full capacity of the pathogenesis of Cronobacter has not yet been elucidated.
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Affiliation(s)
- Ben D. Tall
- Center for Food Safety and Applied Nutrition, Food and Drug Administration in Laurel, Maryland
| | - Yi Chen
- FDA in College Park, Maryland
| | | | - Gopal R. Gopinath
- Center for Food Safety and Applied Nutrition, FDA, in Laurel, Maryland
| | | | - Karen G. Jarvis
- Center for Food Safety and Applied Nutrition, FDA, in Laurel, Maryland
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