1
|
Yildirim-Yalcin M, Yucel O, Tarlak F. Development of prediction software to describe total mesophilic bacteria in spinach using a machine learning-based regression approach. FOOD SCI TECHNOL INT 2025; 31:3-10. [PMID: 37073088 DOI: 10.1177/10820132231170286] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/20/2023]
Abstract
The purpose of this study was to create a tool for predicting the growth of total mesophilic bacteria in spinach using machine learning-based regression models such as support vector regression, decision tree regression, and Gaussian process regression. The performance of these models was compared to traditionally used models (modified Gompertz, Baranyi, and Huang models) using statistical indices like the coefficient of determination (R2) and root mean square error (RMSE). The results showed that the machine learning-based regression models provided more accurate predictions with an R2 of at least 0.960 and an RMSE of at most 0.154, indicating that they can be used as an alternative to traditional approaches for predictive total mesophilic. Therefore, the developed software in this work has a significant potential to be used as an alternative simulation method to traditionally used approach in the predictive food microbiology field.
Collapse
Affiliation(s)
- Meral Yildirim-Yalcin
- Department of Food Engineering, Istanbul Aydin University, Kucukcekmece, Istanbul, Turkey
| | - Ozgun Yucel
- Department of Chemical Engineering, Gebze Technical University, Gebze, Kocaeli, Turkey
| | - Fatih Tarlak
- Department of Nutrition and Dietetics, Istanbul Gedik University, Kartal, Istanbul, Turkey
| |
Collapse
|
2
|
Tarlak F. Machine Learning-Based Software for Predicting Pseudomonas spp. Growth Dynamics in Culture Media. Life (Basel) 2024; 14:1490. [PMID: 39598288 PMCID: PMC11595956 DOI: 10.3390/life14111490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2024] [Revised: 11/12/2024] [Accepted: 11/14/2024] [Indexed: 11/29/2024] Open
Abstract
In predictive microbiology, both primary and secondary models are widely used to estimate microbial growth, often applied through two-step or one-step modelling approaches. This study focused on developing a tool to predict the growth of Pseudomonas spp., a prominent bacterial genus in food spoilage, by applying machine learning regression models, including Support Vector Regression (SVR), Random Forest Regression (RFR) and Gaussian Process Regression (GPR). The key environmental factors-temperature, water activity, and pH-served as predictor variables to model the growth of Pseudomonas spp. in culture media. To assess model performance, these machine learning approaches were compared with traditional models, namely the Gompertz, Logistic, Baranyi, and Huang models, using statistical indicators such as the adjusted coefficient of determination (R2adj) and root mean square error (RMSE). Machine learning models provided superior accuracy over traditional approaches, with R2adj values from 0.834 to 0.959 and RMSE values between 0.005 and 0.010, showcasing their ability to handle complex growth patterns more effectively. GPR emerged as the most accurate model for both training and testing datasets. In external validation, additional statistical indices (bias factor, Bf: 0.998 to 1.047; accuracy factor, Af: 1.100 to 1.167) further supported GPR as a reliable alternative for microbial growth prediction. This machine learning-driven approach bypasses the need for the secondary modelling step required in traditional methods, highlighting its potential as a robust tool in predictive microbiology.
Collapse
Affiliation(s)
- Fatih Tarlak
- Department of Bioengineering, Gebze Technical University, Gebze 41400, Kocaeli, Turkey
| |
Collapse
|
3
|
Lee D, Jeong S, Yun S, Lee S. Artificial intelligence-based prediction of the rheological properties of hydrocolloids for plant-based meat analogues. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2024; 104:5114-5123. [PMID: 38284425 DOI: 10.1002/jsfa.13334] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Revised: 08/21/2023] [Accepted: 01/26/2024] [Indexed: 01/30/2024]
Abstract
BACKGROUND Methylcellulose has been applied as a primary binding agent to control the quality attributes of plant-based meat analogues. H owever, a great deal of effort has been made to search for hydrocolloids to replace methylcellulose because of increasing awareness of clean labels. In this study, a machine learning framework was proposed in order to describe and predict the flow behavior of six hydrocolloid solutions, and the predicted viscosities were correlated with the textural features of their corresponding plant-based meat analogues. RESULTS Different shear-thinning and Newtonian behaviors were observed depending on the type of hydrocolloid and the shear rate. Methylcellulose exhibited an increasing viscosity pattern with increasing temperature, compared to the other hydrocolloids. The machine learning algorithms (random forest and multilayer perceptron models) showed a better viscosity fitting performance than the constitutive equations (power law and Cross models). In addition, three hyperparameters of the multilayer perceptron model (optimizer, learning rate, and the number of hidden layers) were tuned using the Bayesian optimization algorithm. CONCLUSION The optimized multilayer perceptron model exhibited superior performance in viscosity prediction (R2 = 0.9944-0.9961/RMSE = 0.0545-0.0708). Furthermore, the machine learning-predicted viscosities overall showed similar patterns to the textural parameters of the meat analogues. © 2024 Society of Chemical Industry.
Collapse
Affiliation(s)
- Dayeon Lee
- Department of Food Science and Biotechnology, Sejong University, Seoul, Korea
| | - Sungmin Jeong
- Carbohydrate Bioproduct Research Center, Sejong University, Seoul, Korea
| | - Suin Yun
- Department of Food Science and Biotechnology, Sejong University, Seoul, Korea
| | - Suyong Lee
- Department of Food Science and Biotechnology, Sejong University, Seoul, Korea
- Carbohydrate Bioproduct Research Center, Sejong University, Seoul, Korea
| |
Collapse
|
4
|
Liu C, Wang N, Liu LX, Zhang YY, Liu YG. An analytical overview of the composition and characteristics of China's food safety standards. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2024; 104:3197-3205. [PMID: 38233355 DOI: 10.1002/jsfa.13262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2023] [Revised: 11/06/2023] [Accepted: 01/04/2024] [Indexed: 01/19/2024]
Abstract
This paper discusses the framework of China's food safety standards and provides a brief overview of the problems and developmental characteristics of food safety in China. The composition and characteristics of China's food safety standards are revealed by an analysis of the changes in China's general food standards, an overview of the characteristics of the hygiene requirements in the production and operation process, and an introduction to food product and test method standards. In conclusion, Chinese food safety standards are still being improved, but they must also be effectively implemented and followed up in real time in order to continuously improve the quality of food and reduce food safety incidents. © 2024 Society of Chemical Industry.
Collapse
Affiliation(s)
- Chen Liu
- College of Biotechnology, Tianjin University of Science and Technology, Tianjin, China
- College of Life Sciences, Linyi University, Linyi, China
- Shandong (Linyi) Institute of Modern Agriculture, Zhejiang University, Linyi, China
| | - Nan Wang
- College of Biotechnology, Tianjin University of Science and Technology, Tianjin, China
| | - Ling-Xiao Liu
- Linyi Academy of Agricultural Sciences, Linyi, China
| | | | - Yun-Guo Liu
- College of Life Sciences, Linyi University, Linyi, China
| |
Collapse
|
5
|
Raki H, Aalaila Y, Taktour A, Peluffo-Ordóñez DH. Combining AI Tools with Non-Destructive Technologies for Crop-Based Food Safety: A Comprehensive Review. Foods 2023; 13:11. [PMID: 38201039 PMCID: PMC10777928 DOI: 10.3390/foods13010011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 11/27/2023] [Accepted: 12/06/2023] [Indexed: 01/12/2024] Open
Abstract
On a global scale, food safety and security aspects entail consideration throughout the farm-to-fork continuum, considering food's supply chain. Generally, the agrifood system is a multiplex network of interconnected features and processes, with a hard predictive rate, where maintaining the food's safety is an indispensable element and is part of the Sustainable Development Goals (SDGs). It has led the scientific community to develop advanced applied analytical methods, such as machine learning (ML) and deep learning (DL) techniques applied for assessing foodborne diseases. The main objective of this paper is to contribute to the development of the consensus version of ongoing research about the application of Artificial Intelligence (AI) tools in the domain of food-crop safety from an analytical point of view. Writing a comprehensive review for a more specific topic can also be challenging, especially when searching within the literature. To our knowledge, this review is the first to address this issue. This work consisted of conducting a unique and exhaustive study of the literature, using our TriScope Keywords-based Synthesis methodology. All available literature related to our topic was investigated according to our criteria of inclusion and exclusion. The final count of data papers was subject to deep reading and analysis to extract the necessary information to answer our research questions. Although many studies have been conducted, limited attention has been paid to outlining the applications of AI tools combined with analytical strategies for crop-based food safety specifically.
Collapse
Affiliation(s)
- Hind Raki
- College of Computing, University Mohammed VI Polytechnic, Ben Guerir 43150, Morocco; (Y.A.); (D.H.P.-O.)
| | - Yahya Aalaila
- College of Computing, University Mohammed VI Polytechnic, Ben Guerir 43150, Morocco; (Y.A.); (D.H.P.-O.)
| | - Ayoub Taktour
- Materials Sciences and Nanotechnoloy (MSN), University Mohammed VI Polytechnic, Ben Guerir 43150, Morocco;
| | - Diego H. Peluffo-Ordóñez
- College of Computing, University Mohammed VI Polytechnic, Ben Guerir 43150, Morocco; (Y.A.); (D.H.P.-O.)
| |
Collapse
|
6
|
Zhang Y, Wang Y. Recent trends of machine learning applied to multi-source data of medicinal plants. J Pharm Anal 2023; 13:1388-1407. [PMID: 38223450 PMCID: PMC10785154 DOI: 10.1016/j.jpha.2023.07.012] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 07/17/2023] [Accepted: 07/19/2023] [Indexed: 01/16/2024] Open
Abstract
In traditional medicine and ethnomedicine, medicinal plants have long been recognized as the basis for materials in therapeutic applications worldwide. In particular, the remarkable curative effect of traditional Chinese medicine during corona virus disease 2019 (COVID-19) pandemic has attracted extensive attention globally. Medicinal plants have, therefore, become increasingly popular among the public. However, with increasing demand for and profit with medicinal plants, commercial fraudulent events such as adulteration or counterfeits sometimes occur, which poses a serious threat to the clinical outcomes and interests of consumers. With rapid advances in artificial intelligence, machine learning can be used to mine information on various medicinal plants to establish an ideal resource database. We herein present a review that mainly introduces common machine learning algorithms and discusses their application in multi-source data analysis of medicinal plants. The combination of machine learning algorithms and multi-source data analysis facilitates a comprehensive analysis and aids in the effective evaluation of the quality of medicinal plants. The findings of this review provide new possibilities for promoting the development and utilization of medicinal plants.
Collapse
Affiliation(s)
- Yanying Zhang
- Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, 650200, China
- College of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming, 650500, China
| | - Yuanzhong Wang
- Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, 650200, China
| |
Collapse
|
7
|
Tarlak F, Yücel Ö. Prediction of Pseudomonas spp. Population in Food Products and Culture Media Using Machine Learning-Based Regression Methods. Life (Basel) 2023; 13:1430. [PMID: 37511805 PMCID: PMC10381478 DOI: 10.3390/life13071430] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 06/18/2023] [Accepted: 06/21/2023] [Indexed: 07/30/2023] Open
Abstract
Machine learning approaches are alternative modelling techniques to traditional modelling equations used in predictive food microbiology and utilise algorithms to analyse large datasets that contain information about microbial growth or survival in various food matrices. These approaches leverage the power of algorithms to extract insights from the data and make predictions regarding the behaviour of microorganisms in different food environments. The objective of this study was to apply various machine learning-based regression methods, including support vector regression (SVR), Gaussian process regression (GPR), decision tree regression (DTR), and random forest regression (RFR), to estimate bacterial populations. In order to achieve this, a total of 5618 data points for Pseudomonas spp. present in food products (beef, pork, and poultry) and culture media were gathered from the ComBase database. The machine learning algorithms were applied to predict the growth or survival behaviour of Pseudomonas spp. in food products and culture media by considering predictor variables such as temperature, salt concentration, water activity, and acidity. The suitability of the algorithms was assessed using statistical measures such as coefficient of determination (R2), root mean square error (RMSE), bias factor (Bf), and accuracy (Af). Each of the regression algorithms showed appropriate estimation capabilities with R2 ranging from 0.886 to 0.913, RMSE from 0.724 to 0.899, Bf from 1.012 to 1.020, and Af from 1.086 to 1.101 for each food product and culture medium. Since the predictive capability of RFR was the best among the algorithms, externally collected data from the literature were used for RFR. The external validation process showed statistical indices of Bf ranging from 0.951 to 1.040 and Af ranging from 1.091 to 1.130, indicating that RFR can be used for predicting the survival and growth of microorganisms in food products. Therefore, machine learning approaches can be considered as an alternative to conventional modelling methods in predictive microbiology. However, it is important to highlight that the prediction power of the machine learning regression method directly depends on the dataset size, and it requires a large dataset to be employed for modelling. Therefore, the modelling work of this study can only be used for the prediction of Pseudomonas spp. in specific food products (beef, pork, and poultry) and culture medium with certain conditions where a large dataset is available.
Collapse
Affiliation(s)
- Fatih Tarlak
- Department of Nutrition and Dietetics, Istanbul Gedik University, Kartal, Istanbul 34876, Turkey
| | - Özgün Yücel
- Department of Chemical Engineering, Gebze Technical University, Gebze, Kocaeli 41400, Turkey
| |
Collapse
|
8
|
Artificial Intelligence in Food Safety: A Decade Review and Bibliometric Analysis. Foods 2023; 12:foods12061242. [PMID: 36981168 PMCID: PMC10048131 DOI: 10.3390/foods12061242] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 03/06/2023] [Accepted: 03/09/2023] [Indexed: 03/17/2023] Open
Abstract
Artificial Intelligence (AI) technologies have been powerful solutions used to improve food yield, quality, and nutrition, increase safety and traceability while decreasing resource consumption, and eliminate food waste. Compared with several qualitative reviews on AI in food safety, we conducted an in-depth quantitative and systematic review based on the Core Collection database of WoS (Web of Science). To discover the historical trajectory and identify future trends, we analysed the literature concerning AI technologies in food safety from 2012 to 2022 by CiteSpace. In this review, we used bibliometric methods to describe the development of AI in food safety, including performance analysis, science mapping, and network analysis by CiteSpace. Among the 1855 selected articles, China and the United States contributed the most literature, and the Chinese Academy of Sciences released the largest number of relevant articles. Among all the journals in this field, PLoS ONE and Computers and Electronics in Agriculture ranked first and second in terms of annual publications and co-citation frequency. The present character, hot spots, and future research trends of AI technologies in food safety research were determined. Furthermore, based on our analyses, we provide researchers, practitioners, and policymakers with the big picture of research on AI in food safety across the whole process, from precision agriculture to precision nutrition, through 28 enlightening articles.
Collapse
|
9
|
Gu HW, Zhou HH, Lv Y, Wu Q, Pan Y, Peng ZX, Zhang XH, Yin XL. Geographical origin identification of Chinese red wines using ultraviolet-visible spectroscopy coupled with machine learning techniques. J Food Compost Anal 2023. [DOI: 10.1016/j.jfca.2023.105265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/07/2023]
|
10
|
Tapan NA, Günay ME, Yıldırım N. Application of Machine Learning for the Determination of Damaged Starch Ratio as an Alternative to Medcalf and Gilles Principle. FOOD ANAL METHOD 2022. [DOI: 10.1007/s12161-022-02442-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
|
11
|
Determination of grated hard cheese adulteration by digital image analysis and multivariate analysis. Int Dairy J 2022. [DOI: 10.1016/j.idairyj.2022.105539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
|
12
|
Chalyan T, Magnus I, Konstantaki M, Pissadakis S, Diamantakis Z, Thienpont H, Ottevaere H. Benchmarking Spectroscopic Techniques Combined with Machine Learning to Study Oak Barrels for Wine Ageing. BIOSENSORS 2022; 12:227. [PMID: 35448286 PMCID: PMC9032150 DOI: 10.3390/bios12040227] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 04/03/2022] [Accepted: 04/05/2022] [Indexed: 06/14/2023]
Abstract
Due to its physical, chemical, and structural properties, oakwood is widely used in the production of barrels for wine ageing. When in contact with the wine, oak continuously releases aromatic compounds such as lignin, tannin, and cellulose to the liquid. Due to the release process, oak loses its characteristic aromatic compounds in time; hence, the flavour that it gives to the enclosed wine decreases for repeated wine refills and a barrel replacement is required. Currently, the estimation of the maximum number of refills is empirical and its underestimation or overestimation can impose unnecessary costs and impair the quality of the wine. Therefore, there is a clear need to quantify the presence of the aforementioned aromatic compounds in an oak barrel prior to a refill. This work constitutes a study to examine noninvasive optical biosensing techniques for the characterization of an oak barrel used in wine ageing, towards the development of a model to unveil its lifespan without inducing structural damage. Spectroscopic diagnostic techniques, such as reflectance, fluorescence, and Raman scattering measurements are employed to assess the change in the chemical composition of the oakwood barrel (tannin and lignin presence) and its dependence on repeated refills. To our knowledge, this is the first time that we present a benchmarking study of oak barrel ageing characteristics through spectroscopic methods for the wine industry. The spectroscopic data are processed using standard chemometric techniques, such as Linear Discriminant Analysis and Partial Least Squares Discriminant Analysis. Results of a study of fresh, one-time-used, and two-times-used oak barrel samples demonstrate that reflectance spectroscopy can be a valuable tool for the characterization of oak barrels. Moreover, reflectance spectroscopy has demonstrated the most accurate classification performance. The highest accuracy has been obtained by a Partial Least Squares Discriminant Analysis model that has been able to classify all the oakwood samples from the barrels with >99% accuracy. These preliminary results pave a way for the application of cost-effective and non-invasive biosensing techniques based on reflectance spectroscopy for oak barrels assessment.
Collapse
Affiliation(s)
- Tatevik Chalyan
- Brussels Photonics (B-PHOT), Department of Applied Physics and Photonics, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium; (I.M.); (H.T.); (H.O.)
| | - Indy Magnus
- Brussels Photonics (B-PHOT), Department of Applied Physics and Photonics, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium; (I.M.); (H.T.); (H.O.)
| | - Maria Konstantaki
- Institute of Electronic Structure and Laser (IESL), Foundation for Research and Technology-Hellas (FORTH), 70013 Heraklion, Greece; (M.K.); (S.P.)
| | - Stavros Pissadakis
- Institute of Electronic Structure and Laser (IESL), Foundation for Research and Technology-Hellas (FORTH), 70013 Heraklion, Greece; (M.K.); (S.P.)
| | - Zacharias Diamantakis
- Winemakers’ Association of the Department of Heraklion—Wines of Crete, Archimidous 1 & Ikarou St., 71601 Heraklion, Greece;
| | - Hugo Thienpont
- Brussels Photonics (B-PHOT), Department of Applied Physics and Photonics, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium; (I.M.); (H.T.); (H.O.)
| | - Heidi Ottevaere
- Brussels Photonics (B-PHOT), Department of Applied Physics and Photonics, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium; (I.M.); (H.T.); (H.O.)
| |
Collapse
|