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Wang H, Xin C, Meng X, Xing S, Guo B, Chen Y, Wang BJ, Yao J. Genetic polymorphism and forensic application of 23 autosomal STR loci in the Han population of Panjin City, Liaoning Province, Northeastern China. Ann Hum Biol 2022; 49:254-259. [PMID: 35815629 DOI: 10.1080/03014460.2022.2100479] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
BACKGROUND Short tandem repeats (STRs) are consecutive repetition of a repeat motif and widely used in forensic medicine and human genetics because of their high polymorphism. SUBJECTS AND METHODS In the current study, 23 autosomal STR loci were genotyped from 1263 unrelated healthy individuals living in Panjin City, Liaoning Province, Northeastern China using the VeriFilerTM Express PCR Amplification Kit. The population comparison was performed between the Panjin Han population and the other relevant groups to further explore the structure of Panjin Han and its relationship with the other groups. RESULTS The results found 316 alleles across the 23 STRs and the corresponding allelic frequencies ranged from 0.5198 to 0.0004. Except for D3S1358, TPOX, TH01, and D3S1358, all STR loci were highly polymorphic (PIC > 0.7), with the Penta E locus having the highest degree of polymorphism (0.9147). For population comparison, the exact test of population differentiation found that no significant difference was observed between the Panjin Han and the other Han populations, except for Guangdong Han and Jiangxi Han. CONCLUSION The Panjin Han population showed significant differences with the other ethnic groups in China (Bouyei, Dong, Hui, Miao, Tibetan, and Uygur) and the foreign ethnic groups.
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Affiliation(s)
- Hongbo Wang
- Department of Anatomy, Shenyang Medical College, Shenyang, China
| | | | - Xinyao Meng
- Department of Anatomy, Shenyang Medical College, Shenyang, China
| | - Shihan Xing
- Department of Anatomy, Shenyang Medical College, Shenyang, China
| | - Baotong Guo
- Department of Anatomy, Shenyang Medical College, Shenyang, China
| | - Yuhan Chen
- Department of Anatomy, Shenyang Medical College, Shenyang, China
| | - Bao-Jie Wang
- School of Forensic Medicine, China Medical University, Shenyang, China
| | - Jun Yao
- School of Forensic Medicine, China Medical University, Shenyang, China
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Adnan A, Anwar A, Simayijiang H, Farrukh N, Hadi S, Wang CC, Xuan JF. The Heart of Silk Road "Xinjiang," Its Genetic Portray, and Forensic Parameters Inferred From Autosomal STRs. Front Genet 2021; 12:760760. [PMID: 34976009 PMCID: PMC8719170 DOI: 10.3389/fgene.2021.760760] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Accepted: 10/27/2021] [Indexed: 11/13/2022] Open
Abstract
The Xinjiang Uyghur Autonomous Region of China (XUARC) harbors almost 50 ethnic groups including the Uyghur (UGR: 45.84%), Han (HAN: 40.48%), Kazakh (KZK: 6.50%), Hui (HUI: 4.51%), Kyrgyz (KGZ: 0.86%), Mongol (MGL: 0.81%), Manchu (MCH: 0.11%), and Uzbek (UZK: 0.066%), which make it one of the most colorful regions with abundant cultural and genetic diversities. In our previous study, we established allelic frequency databases for 14 autosomal short tandem repeats (STRs) for four minority populations from XUARC (MCH, KGZ, MGL, and UZK) using the AmpFlSTR® Identifiler PCR Amplification Kit. In this study, we genotyped 2,121 samples using the GoldenEye™ 20A Kit (Beijing PeopleSpot Inc., Beijing, China) amplifying 19 autosomal STR loci for four major ethnic groups (UGR, HAN, KZK, and HUI). These groups make up 97.33% of the total XUARC population. The total number of alleles for all the 19 STRs in these populations ranged from 232 (HAN) to 224 (KZK). We did not observe any departures from the Hardy-Weinberg equilibrium (HWE) in these populations after sequential Bonferroni correction. We did find minimal departure from linkage equilibrium (LE) for a small number of pairwise combinations of loci. The match probabilities for the different populations ranged from 1 in 1.66 × 1023 (HAN) to 6.05 × 1024 (HUI), the combined power of exclusion ranged from 0.999 999 988 (HUI) to 0.999 999 993 (UGR), and the combined power of discrimination ranged from 0.999 999 999 999 999 999 999 983 (HAN) to 0.999 999 999 999 999 999 999 997 (UGR). Genetic distances, principal component analysis (PCA), STRUCTURE analysis, and the phylogenetic tree showed that genetic affinity among studied populations is consistent with linguistic, ethnic, and geographical classifications.
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Affiliation(s)
- Atif Adnan
- Department of Forensic Genetics, School of Forensic Medicine, China Medical University, Shenyang, China
- Department of Forensic Sciences, College of Criminal Justice, Naif Arab University of Security Sciences, Riyadh, Kingdom of Saudi Arabia
- Department of Anthropology and Ethnology, School of Sociology and Anthropology, Institute of Anthropology, Xiamen University, Xiamen, China
| | - Adeel Anwar
- Department of Orthopedic Surgery, The 3rd Affiliated Hospital of Chongqing Medical University, Chongqing, China
| | - Halimureti Simayijiang
- Department of Forensic Medicine, School of Basic Medical Sciences, Binzhou Medical University, Yantai, China
| | - Noor Farrukh
- Department of Forensic Sciences, College of Criminal Justice, Naif Arab University of Security Sciences, Riyadh, Kingdom of Saudi Arabia
| | - Sibte Hadi
- Department of Forensic Sciences, College of Criminal Justice, Naif Arab University of Security Sciences, Riyadh, Kingdom of Saudi Arabia
| | - Chuan-Chao Wang
- Department of Anthropology and Ethnology, School of Sociology and Anthropology, Institute of Anthropology, Xiamen University, Xiamen, China
- State Key Laboratory of Cellular Stress Biology, School of Life Sciences, National Institute for Data Science in Health and Medicine, Xiamen University, Xiamen, China
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
| | - Jin-Feng Xuan
- Department of Forensic Genetics, School of Forensic Medicine, China Medical University, Shenyang, China
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Aguilar-Velázquez JA, Stephenson-Ojea MM, García-King MD, Rangel-Villalobos H. Genetic diversity, structure, and admixture in Mayans from Guatemala and Mexico based on 15 short tandem repeats. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2021; 175:238-250. [PMID: 33522608 DOI: 10.1002/ajpa.24203] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Revised: 11/14/2020] [Accepted: 11/30/2020] [Indexed: 11/05/2022]
Abstract
OBJECTIVE To analyze the genetic origin, relationships, structure, and admixture in Mayan Native American groups from Guatemala and Mexico based on 15 autosomal short tandem repeats (STRs) loci commonly used in human identification (HID). METHODS We genotyped 513 unrelated Mayan samples from Guatemala based on 15 STR loci (AmpFlSTR® Identifiler kit). Moreover, we included 4408 genotypes previously reported, as following: Mayas from Guatemala and Mexico (n = 1666) and from Latin American, European, and African (n = 2742) populations. Forensic parameters, genetic distances, admixture, and population structure were assessed. RESULTS Forensic parameters of the 15 STRs in different Mayan groups from Guatemala were reported. Low (Fst = 0.78%; p = 0.000) and non-significant differentiation (Fst = 1.8%; p = 0.108) were observed in Mayas from Guatemala and Mexico, respectively. The relative homogeneity observed among Mayan groups supported theories of extensive pre-Columbian gene flow and trade throughout the Mayan Empire. The distribution of the three Native American ancestries among these Mayan groups did not support the presumable Guatemalan origin of Tojolabal and Lacandon people (South, Mexico). The nonsignificant differentiation between Ladinos and Mayas suggests a relative panmixia in Guatemala. Mestizos from southeastern Mexico and Guatemala constitute a core of Native American ancestry in Latin America related to the Mayan Empire in Central America. CONCLUSIONS The higher European admixture and homogeneity in Mexican Mayas of the Yucatan Peninsula suggest more intensive post-Columbian gene flow in this region than in Guatemalan Mayas.
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Affiliation(s)
- José Alonso Aguilar-Velázquez
- Instituto de Investigación en Genética Molecular, Departamento de Ciencias Médicas y de la Vida, Universidad de Guadalajara, Av. Universidad #1115, Col, Lindavista, Ocotlán, Jalisco, 47810, Mexico.,Doctorado en Genética Humana, Centro Universitario de Ciencias de la Salud (CUCS-UdeG), Universidad de Guadalajara, Sierra Mojada #950, Guadalajara, Jalisco, Mexico
| | - Mishel Marie Stephenson-Ojea
- Laboratorio de Genética Forense, Fundación de Antropología Forense de Guatemala (FAFG), 1a Calle 1-53, Guatemala, Zona 2, Guatemala
| | - Marco David García-King
- Laboratorio de Genética Forense, Fundación de Antropología Forense de Guatemala (FAFG), 1a Calle 1-53, Guatemala, Zona 2, Guatemala
| | - Héctor Rangel-Villalobos
- Instituto de Investigación en Genética Molecular, Departamento de Ciencias Médicas y de la Vida, Universidad de Guadalajara, Av. Universidad #1115, Col, Lindavista, Ocotlán, Jalisco, 47810, Mexico
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Wu X, Zheng JL, Lou Y, Wei XH, Wang BJ, Yao J. Genetic polymorphisms of 20 autosomal STR loci in the Han population of Zhangzhou City, Southeastern China. Leg Med (Tokyo) 2020; 46:101726. [DOI: 10.1016/j.legalmed.2020.101726] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Revised: 04/18/2020] [Accepted: 06/01/2020] [Indexed: 01/10/2023]
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5
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Lu Y, Sun HJ, Zhou JC, Wu X. Genetic polymorphisms, forensic efficiency and phylogenetic analysis of 17 autosomal STR loci in the Han population of Wuxi, Eastern China. Ann Hum Biol 2019; 46:601-605. [DOI: 10.1080/03014460.2019.1693628] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Yan Lu
- School of Forensic Medicine, China Medical University, Shenyang, PR China
- Key Laboratory of Health Ministry in Congenital Malformation, the Affiliated Shengjing Hospital of China Medical University, Shenyang, PR China
| | - Hong-jie Sun
- Institute of Criminal Science and Technology, Wuxi Public Security Bureau, Wuxi, PR China
| | - Ji-chuan Zhou
- School of Forensic Medicine, China Medical University, Shenyang, PR China
| | - Xu Wu
- School of Forensic Medicine, China Medical University, Shenyang, PR China
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Aguilar-Velázquez J, Sthepenson-Ojea M, García-King MD, Rangel-Villalobos H. Admixture and population structure in Mayas and Ladinos from Guatemala based on 15 STRs. FORENSIC SCIENCE INTERNATIONAL GENETICS SUPPLEMENT SERIES 2019. [DOI: 10.1016/j.fsigss.2019.10.173] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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7
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Adnan A, Rakha A, Nazir S, Rehman Z, Lu J, Xuan JF. Genetic characterization of 15 autosomal STRs in the interior Sindhi population of Pakistan and their phylogenetic relationship with other populations. Int J Immunogenet 2019; 47:149-157. [PMID: 31657139 DOI: 10.1111/iji.12458] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2019] [Revised: 09/02/2019] [Accepted: 09/18/2019] [Indexed: 11/28/2022]
Abstract
Genetic structure of a population can be influenced by evolutionary processes and cultural histories which can alter the frequencies of different variants at particular genetic markers. These characteristics make DNA evidence suitable for forensic applications. Little relevant data are available from the interior Sindhi population; thus, in the current study, we have investigated 15 autosomal STRs in 181 unrelated individuals belonging to the interior parts of Sindh Pakistan, to establish its lineage and parameters of forensic interest. These STRs revealed a high power of discrimination (CPD), power of exclusion (CPE) and matching probability (CMP) are 0.9999999999999999968997, 0.99998612 and 3.1003 × 10-18 respectively. The genetic distances, neighbour-joining (NJ) tree, interactivity test and principal component analysis (PCA) based on 15 autosomal STR loci showed that the interior Sindhi population had a closer genetic relationship with Pakistani populations and distant relationships with regional (India and Afghanistan) populations. The present findings exhibited that STRs included in AmpFLSTR Identifiler kit (Applied Biosystems) are genetically polymorphic in the interior Sindhi population of Pakistan. This study provides valuable population genetic data for the genetic information study, forensic human individual identification and paternity testing.
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Affiliation(s)
- Atif Adnan
- Department of Human Anatomy, School of Basic Medicine, China Medical University, Shenyang, China
| | - Allah Rakha
- Department of Forensic Sciences, University of Health Sciences, Lahore, Pakistan
| | - Shahid Nazir
- Department of Forensic Sciences, University of Health Sciences, Lahore, Pakistan
| | - Ziaur Rehman
- Department of Biotechnology, Faculty of Life Sciences, University of Central Punjab, Lahore, Pakistan
| | - Jie Lu
- Department of Human Anatomy, School of Basic Medicine, China Medical University, Shenyang, China
| | - Jin-Feng Xuan
- Department of Forensic Genetics and Biology, School of Forensic Medicine, China Medical University, Shenyang, China
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Zhao ZL, Xia L, Zhao C, Ameen F, Alyahya S, Yao J. Population genetics of 15 autosomal STR loci in the Han population of Ili Kazakh Autonomous Prefecture, Northwestern China. Ann Hum Genet 2019; 83:318-324. [PMID: 30895616 DOI: 10.1111/ahg.12314] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2018] [Revised: 02/20/2019] [Accepted: 03/05/2019] [Indexed: 01/26/2023]
Abstract
PURPOSE China harbors 56 ethnic groups and Han accounts for >92% of the total Chinese population. We investigated the frequencies of 15 autosomal short tandem repeat (STR) loci in the Han population of the Ili Kazakh Autonomous Prefecture with the aim of expanding the available population information in human genetics databases and for forensic DNA analysis. SUBJECTS AND METHODS We explored the genetic characteristics of 15 autosomal STR loci in 552 unrelated Chinese Han individuals from Ili Kazakh Autonomous Prefecture, Northwestern China using the AmpFISTR Identifiler PCR Amplification Kit. Moreover, phylogenetic analysis was performed between the Han population and other relevant populations based on the autosomal STR genotyping. The neighbor-joining tree and principle component analysis were generated based on the Nei's standard genetic distance and allelic frequencies, respectively. RESULTS A total of 171 alleles were observed among 552 unrelated individuals and allelic frequencies ranged from 0.5145 to 0.0009. The combined power of discrimination and combined power of exclusion of the 15 autosomal STR loci were 0.9999999999999999964 and 0.999998243616671, respectively. CONCLUSIONS Population comparison revealed that the Ili Han population were lining up together with other Han populations in China while showing significant differences from other Chinese and worldwide populations.
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Affiliation(s)
- Zhi-Liang Zhao
- Hospital Office, Chengdu First People's Hospital, Chengdu, Sichuan Province, China.,Department of Anesthesia, Critical Care and Pain Medicine, Massachusetts General Hospital, Harvard Medical School, Charlestown, Massachusetts
| | - Lu Xia
- Department of Rehabilitation, Chengdu First People's Hospital, Chengdu, Sichuan Province, China
| | - Cong Zhao
- Department of Gastroenterology, Chengdu First People's Hospital, Chengdu, Sichuan Province, China
| | - Fuad Ameen
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Sami Alyahya
- National Center for Biotechnology, King Abdul Aziz City for Science and Technology, Riyadh, Saudi Arabia
| | - Jun Yao
- School of Forensic Medicine, China Medical University, Shenbei New District, Shenyang, China
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Stephenson-Ojea M, Aguilar-Velázquez J, García-King M, Rangel-Villalobos H. Forensic parameters of 15 autosomal STRs (Identifiler™ kit) in three Mayan groups and one Mestizo population from Guatemala. Leg Med (Tokyo) 2019; 37:25-27. [DOI: 10.1016/j.legalmed.2018.12.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2018] [Revised: 12/11/2018] [Accepted: 12/22/2018] [Indexed: 12/18/2022]
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10
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Feng C, Wang X, Yu H, Wang X, Zhang G. Genetic polymorphisms, forensic efficiency, and phylogenetic analysis of 15 autosomal STR loci in the Uygur population of Ili Kazakh Autonomous Prefecture, Northwestern China. Ann Hum Genet 2018; 83:46-53. [DOI: 10.1111/ahg.12283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2018] [Revised: 07/30/2018] [Accepted: 07/31/2018] [Indexed: 11/28/2022]
Affiliation(s)
- Chun‐Mei Feng
- School of Forensic Medicine China Medical University Shenyang P.R. China
- Department of Biotechnology Laboratory Mudanjiang Medical College Mudanjiang P.R. China
| | - Xin Wang
- DNA Laboratory of Criminal Police Detachment Suzhou Public Security Bureau Suzhou P.R. China
| | - Hao Yu
- School of Forensic Medicine China Medical University Shenyang P.R. China
| | - Xiao‐Long Wang
- School of Forensic Medicine China Medical University Shenyang P.R. China
| | - Guo‐Hua Zhang
- School of Forensic Medicine China Medical University Shenyang P.R. China
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Zhan X, Adnan A, Zhou Y, Khan A, Kasim K, McNevin D. Forensic characterization of 15 autosomal STRs in four populations from Xinjiang, China, and genetic relationships with neighboring populations. Sci Rep 2018; 8:4673. [PMID: 29549272 PMCID: PMC5856808 DOI: 10.1038/s41598-018-22975-6] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2017] [Accepted: 03/05/2018] [Indexed: 11/29/2022] Open
Abstract
The Xinjiang Uyghur Autonomous Region of China (XUARC) harbors 47 ethnic groups including the Manchu (MCH: 0.11%), Mongols (MGL: 0.81%), Kyrgyz (KGZ: 0.86%) and Uzbek (UZK: 0.066%). To establish DNA databases for these populations, allele frequency distributions for 15 autosomal short tandem repeat (STR) loci were determined using the AmpFlSTR Identifiler PCR amplification kit. There was no evidence of departures from Hardy-Weinberg equilibrium (HWE) in any of the four populations and minimal departure from linkage equilibrium (LE) for a very small number of pairwise combinations of loci. The probabilities of identity for the different populations ranged from 1 in 1.51 × 1017 (MCH) to 1 in 9.94 × 1018 (MGL), the combined powers of discrimination ranged from 0.99999999999999999824 (UZK) to 0.9999999999999999848 (MCH) and the combined probabilities of paternal exclusion ranged from 0.9999979323 (UZK) to 0.9999994839 (MCH). Genetic distances, a phylogenetic tree and principal component analysis (PCA) revealed that the MCH, KGZ and UZK are genetically closer to the Han population of Liaoning and the Mongol population of Mongolia while the MGL are closer to Han, Japanese, Korean, Malaysian, Hong Kong Han and Russians living in China.
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Affiliation(s)
- Xiaoni Zhan
- Department of Forensic Genetics, School of Forensic Medicine, China Medical University, Shenyang, 110122, P.R. China
| | - Atif Adnan
- Department of Forensic Genetics, School of Forensic Medicine, China Medical University, Shenyang, 110122, P.R. China.
| | - Yuzhang Zhou
- Department of Forensic Genetics, School of Forensic Medicine, China Medical University, Shenyang, 110122, P.R. China
| | - Amjad Khan
- Department of Forensic Genetics, School of Forensic Medicine, China Medical University, Shenyang, 110122, P.R. China
| | - Kadirya Kasim
- Department of Forensic Genetics, School of Forensic Medicine, China Medical University, Shenyang, 110122, P.R. China
| | - Dennis McNevin
- National Centre for Forensic Studies, Faculty of Science & Technology, University of Canberra, Canberra, Australia
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12
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Feng C, Wang X, Wang X, Yu H, Zhang G. Genetic polymorphisms, forensic efficiency and phylogenetic analysis of 15 autosomal STR loci in the Kazak population of Ili Kazak Autonomous Prefecture, northwestern China. Ann Hum Biol 2018; 45:160-165. [DOI: 10.1080/03014460.2018.1445289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Chunmei Feng
- School of Forensic Medicine, China Medical University, Shenyang, Liaoning, PR China
- Department of Biotechnology Laboratory, Mudanjiang Medical College, Mudanjiang, Heilongjiang, PR China
| | - Xin Wang
- DNA Laboratory of Criminal Police Detachment, Suzhou Public Security Bureau, Suzhou, Jiangsu, PR China
| | - Xiaolong Wang
- School of Forensic Medicine, China Medical University, Shenyang, Liaoning, PR China
| | - Hao Yu
- School of Forensic Medicine, China Medical University, Shenyang, Liaoning, PR China
| | - Guohua Zhang
- School of Forensic Medicine, China Medical University, Shenyang, Liaoning, PR China
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Genetic polymorphisms of 15 autosomal STR loci in 3962 individuals from the Han population of Jiangxi, Southeast China. Forensic Sci Int Genet 2017; 31:e57-e58. [DOI: 10.1016/j.fsigen.2017.08.010] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Revised: 08/04/2017] [Accepted: 08/08/2017] [Indexed: 11/30/2022]
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14
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Liu YS, Chen JG, Mei T, Guo YX, Meng HT, Li JF, Wei YY, Jin XY, Zhu BF, Zhang LP. Genetic variation and forensic characteristic analysis of 25 STRs of a novel fluorescence co-amplification system in Chinese Southern Shaanxi Han population. Oncotarget 2017; 8:55443-55452. [PMID: 28903432 PMCID: PMC5589671 DOI: 10.18632/oncotarget.19317] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2017] [Accepted: 06/05/2017] [Indexed: 11/25/2022] Open
Abstract
We analyzed the genetic polymorphisms of 15 autosomal and 10 Y-chromosomal STR loci in 214 individuals of Han population from Southern Shaanxi of China and studied the genetic relationships between Southern Shaanxi Han and other populations. We observed a total of 150 alleles at 15 autosomal STR loci with the corresponding allelic frequencies ranging from 0.0023 to 0.5210, and the combined power of discrimination and exclusion for the 15 autosomal STR loci were 0.99999999999999998866 and 0.999998491, respectively. For the 10 Y-STR loci, totally 100 different haplotypes were obtained, of which 94 were unique. The discriminatory capacity and haplotype diversity values of the 10 Y-STR loci were 0.9259 and 0.998269, respectively. The results demonstrated high genetic diversities of the 25 STR loci in the population for forensic applications. We constructed neighbor-joining tree and conducted principal component analysis based on 15 autosomal STR loci and conducted multidimensional scaling analysis and constructed neighbor-joining tree based on 10 Y-STR loci. The results of population genetic analyses based on both autosomal and Y-chromosome STRs indicated that the studied Southern Shaanxi Han population had relatively closer genetic relationship with Eastern Han population, and distant relationships with Croatian, Serbian and Moroccan populations.
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Affiliation(s)
- Yao-Shun Liu
- Department of Biochemistry and Molecular Biology, Basic Medicine College of Xinjiang Medical University, Urumqi, Xinjiang 830011, P. R. China.,Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an, Shaanxi 710004, P. R. China.,Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an, Shaanxi 710004, P. R. China.,Department of Forensic Genetics, School of Forensic Medicine, Southern Medical University, Guangzhou, Guangdong 510515, P. R. China
| | - Jian-Gang Chen
- Department of Biochemistry and Molecular Biology, Basic Medicine College of Xinjiang Medical University, Urumqi, Xinjiang 830011, P. R. China.,Science and Technology Institute, Xinjiang Public Security Department, Urumqi, Xinjiang 830006, P.R. China
| | - Ting Mei
- Department of Biochemistry and Molecular Biology, Basic Medicine College of Xinjiang Medical University, Urumqi, Xinjiang 830011, P. R. China.,Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an, Shaanxi 710004, P. R. China.,Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an, Shaanxi 710004, P. R. China
| | - Yu-Xin Guo
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an, Shaanxi 710004, P. R. China.,Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an, Shaanxi 710004, P. R. China
| | - Hao-Tian Meng
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an, Shaanxi 710004, P. R. China.,Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an, Shaanxi 710004, P. R. China
| | - Jian-Fei Li
- School of Marxism, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, P.R. China
| | - Yuan-Yuan Wei
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an, Shaanxi 710004, P. R. China.,Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an, Shaanxi 710004, P. R. China
| | - Xiao-Ye Jin
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an, Shaanxi 710004, P. R. China.,Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an, Shaanxi 710004, P. R. China
| | - Bo-Feng Zhu
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an, Shaanxi 710004, P. R. China.,Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an, Shaanxi 710004, P. R. China.,Department of Forensic Genetics, School of Forensic Medicine, Southern Medical University, Guangzhou, Guangdong 510515, P. R. China
| | - Li-Ping Zhang
- Department of Biochemistry and Molecular Biology, Basic Medicine College of Xinjiang Medical University, Urumqi, Xinjiang 830011, P. R. China
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Xu XM, Xu ZH, Wang DW, Yao J. Population data of 18 autosomal STR loci in the Chinese Han population from Heilongjiang Province, Northeast China. Forensic Sci Int Genet 2017; 29:e33-e34. [DOI: 10.1016/j.fsigen.2017.04.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2017] [Revised: 03/27/2017] [Accepted: 04/02/2017] [Indexed: 01/10/2023]
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16
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Genetic polymorphisms of 20 autosomal STR loci in 5141 individuals from the Han population of Xiamen, Southeast China. Forensic Sci Int Genet 2017; 29:e31-e32. [DOI: 10.1016/j.fsigen.2017.03.023] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2016] [Revised: 02/27/2017] [Accepted: 03/30/2017] [Indexed: 01/10/2023]
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17
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Population data of 15 autosomal STR loci in Chinese Han population from Yangjiang, Southern China. Forensic Sci Int Genet 2017; 28:e14-e15. [DOI: 10.1016/j.fsigen.2017.01.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2016] [Revised: 10/31/2016] [Accepted: 01/07/2017] [Indexed: 11/20/2022]
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18
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Yao J, Xiong KY, Zhang Y. Population data of 19 autosomal STR loci in the Chinese Han population from Jiujiang, Southern China. Forensic Sci Int Genet 2017; 28:e47-e48. [PMID: 28302373 DOI: 10.1016/j.fsigen.2017.03.007] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2016] [Revised: 02/21/2017] [Accepted: 03/04/2017] [Indexed: 01/10/2023]
Affiliation(s)
- Jun Yao
- School of Forensic Medicine, China Medical University, No. 77, Puhe Road, Shenbei New District, Shenyang, Liaoning, 110122, China
| | - Ke-Yang Xiong
- Fifth Battalion, Interpol detachment, Public Security Bureau of Yangjiang City, No. 99, Dongfeng San Road, Jiangcheng District, Yangjiang, Guangdong, 529500, China
| | - Yong Zhang
- Cancer Hospital of China Medical University, Liaoning Cancer Hospital & Institute, No. 44, Xiaoheyan Road, Dadong District, Shenyang, Liaoning, 110042, China.
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19
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Genetic structure of Tibetan populations in Gansu revealed by forensic STR loci. Sci Rep 2017; 7:41195. [PMID: 28112227 PMCID: PMC5255561 DOI: 10.1038/srep41195] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2016] [Accepted: 12/15/2016] [Indexed: 01/07/2023] Open
Abstract
The origin and diversification of Sino-Tibetan speaking populations have been long-standing hot debates. However, the limited genetic information of Tibetan populations keeps this topic far from clear. In the present study, we genotyped 15 forensic autosomal short tandem repeats (STRs) from 803 unrelated Tibetan individuals from Gansu Province (635 from Gannan and 168 from Tianzhu) in northwest China. We combined these data with published dataset to infer a detailed population affinities and genetic substructure of Sino-Tibetan populations. Our results revealed Tibetan populations in Gannan and Tianzhu are genetically very similar with Tibetans from other regions. The Tibetans in Tianzhu have received more genetic influence from surrounding lowland populations. The genetic structure of Sino-Tibetan populations was strongly correlated with linguistic affiliations. Although the among-population variances are relatively small, the genetic components for Tibetan, Lolo-Burmese, and Han Chinese were quite distinctive, especially for the Deng, Nu, and Derung of Lolo-Burmese. Han Chinese but not Tibetans are suggested to share substantial genetic component with southern natives, such as Tai-Kadai and Hmong-Mien speaking populations, and with other lowland East Asian populations, which implies there might be extensive gene flow between those lowland groups and Han Chinese after Han Chinese were separated from Tibetans. The dataset generated in present study is also valuable for forensic identification and paternity tests in China.
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20
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Yao HB, Wang CC, Tao X, Shang L, Wen SQ, Zhu B, Kang L, Jin L, Li H. Genetic evidence for an East Asian origin of Chinese Muslim populations Dongxiang and Hui. Sci Rep 2016; 6:38656. [PMID: 27924949 PMCID: PMC5141421 DOI: 10.1038/srep38656] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2016] [Accepted: 11/10/2016] [Indexed: 11/12/2022] Open
Abstract
There is a long-going debate on the genetic origin of Chinese Muslim populations, such as Uygur, Dongxiang, and Hui. However, genetic information for those Muslim populations except Uygur is extremely limited. In this study, we investigated the genetic structure and ancestry of Chinese Muslims by analyzing 15 autosomal short tandem repeats in 652 individuals from Dongxiang, Hui, and Han Chinese populations in Gansu province. Both genetic distance and Bayesian-clustering methods showed significant genetic homogeneity between the two Muslim populations and East Asian populations, suggesting a common genetic ancestry. Our analysis found no evidence of substantial gene flow from Middle East or Europe into Dongxiang and Hui people during their Islamization. The dataset generated in present study are also valuable for forensic identification and paternity tests in China.
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Affiliation(s)
- Hong-Bing Yao
- Key Laboratory of Evidence Science of Gansu Province, Gansu Institute of Political Science and Law, Lanzhou, 730070, China
| | - Chuan-Chao Wang
- State Key Laboratory of Genetic Engineering and Ministry of Education Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, 200433, China.,Department of Archaeogenetics and Eurasia3angle research group, Max Planck Institute for the Science of Human History, Kahlaische Straße 10, 07745 Jena, Germany
| | - Xiaolan Tao
- Key Laboratory of Evidence Science of Gansu Province, Gansu Institute of Political Science and Law, Lanzhou, 730070, China
| | - Lei Shang
- Key Laboratory of Forensic Genetics, Institute of Forensic Science, Ministry of Public Security, Beijing, 100038, China
| | - Shao-Qing Wen
- State Key Laboratory of Genetic Engineering and Ministry of Education Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, 200433, China
| | - Bofeng Zhu
- School of Medicine, Xi'an Jiaotong University, Xi'an, 710061, China
| | - Longli Kang
- Key Laboratory of High Altitude Environment and Gene Related to Disease of Tibet, Ministry of Education, Tibet University for Nationalities, Xianyang, Shaanxi, 712082, China
| | - Li Jin
- State Key Laboratory of Genetic Engineering and Ministry of Education Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, 200433, China.,CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Hui Li
- State Key Laboratory of Genetic Engineering and Ministry of Education Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, 200433, China
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21
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Song F, Li J, Zhang L, Luo H. Population data for 22 autosomal STR loci in the Uygur ethnic minority. Int J Legal Med 2016; 131:651-652. [PMID: 27604533 DOI: 10.1007/s00414-016-1451-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2016] [Accepted: 08/30/2016] [Indexed: 11/28/2022]
Abstract
Allele frequencies and forensically relevant population statistics parameter of 22 short tandem repeat (STR) loci were determined from 525 unrelated Uygur ethnic individuals. The samples were amplified with Microreader™ 23sp ID system. No significant deviation from Hardy-Weinberg equilibrium was detected, except for loci D7S3048, D21S1270, and D13S325. Investigated loci are very discriminating in Uygur ethnic population, with a combined discrimination power of 0.999999999999999999999999999920743. Furthermore, a comparison with previously published frequency data from Han population is presented.
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Affiliation(s)
- Feng Song
- Department of Forensic Genetics, West China School of Basic Science and Forensic Medicine, Sichuan University (West China University of Medical Sciences), 3-17 Renmin South Road, Chengdu, Sichuan, 610041, People's Republic of China
| | - Jienan Li
- Department of Forensic Genetics, West China School of Basic Science and Forensic Medicine, Sichuan University (West China University of Medical Sciences), 3-17 Renmin South Road, Chengdu, Sichuan, 610041, People's Republic of China
| | - Lushun Zhang
- Department of Pathology and Pathophysiology, Chendu Medical College, Chengdu, 610500, Sichuan, China
| | - Haibo Luo
- Department of Forensic Genetics, West China School of Basic Science and Forensic Medicine, Sichuan University (West China University of Medical Sciences), 3-17 Renmin South Road, Chengdu, Sichuan, 610041, People's Republic of China.
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22
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Genetic Variation of 25 Y-Chromosomal and 15 Autosomal STR Loci in the Han Chinese Population of Liaoning Province, Northeast China. PLoS One 2016; 11:e0160415. [PMID: 27483472 PMCID: PMC4970702 DOI: 10.1371/journal.pone.0160415] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2016] [Accepted: 07/19/2016] [Indexed: 11/19/2022] Open
Abstract
In the present study, we investigated the genetic characteristics of 25 Y-chromosomal and 15 autosomal short tandem repeat (STR) loci in 305 unrelated Han Chinese male individuals from Liaoning Province using AmpFISTR® Yfiler® Plus and IdentifilerTM PCR amplification kits. Population comparison was performed between Liaoning Han population and different ethnic groups to better understand the genetic background of the Liaoning Han population. For Y-STR loci, the overall haplotype diversity was 0.9997 and the discrimination capacity was 0.9607. Gene diversity values ranged from 0.4525 (DYS391) to 0.9617 (DYS385). Rst and two multi-dimensional scaling plots showed that minor differences were observed when the Liaoning Han population was compared to the Jilin Han Chinese, Beijing Han Chinese, Liaoning Manchu, Liaoning Mongolian, Liaoning Xibe, Shandong Han Chinese, Jiangsu Han Chinese, Anhui Han Chinese, Guizhou Han Chinese and Liaoning Hui populations; by contrast, major differences were observed when the Shanxi Han Chinese, Yunnan Bai, Jiangxi Han Chinese, Guangdong Han Chinese, Liaoning Korean, Hunan Tujia, Guangxi Zhuang, Gansu Tibetan, Xishuangbanna Dai, South Korean, Japanese and Hunan Miao populations. For autosomal STR loci, DP ranged from 0.9621 (D2S1338) to 0.8177 (TPOX), with PE distributing from 0.7521 (D18S51) to 0.2988 (TH01). A population comparison was performed and no statistically significant differences were detected at any STR loci between Liaoning Han, China Dong, and Shaanxi Han populations. The results showed that the 25 Y-STR and 15 autosomal STR loci in the Liaoning Han population were valuable for forensic applications and human genetics, and Liaoning Han was an independent endogenous ethnicity with a unique subpopulation structure.
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23
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Yao J, Wang LM, Gui J, Xing JX, Xuan JF, Wang BJ. Population data of 15 autosomal STR loci in Chinese Han population from Liaoning Province, Northeast China. Forensic Sci Int Genet 2016; 23:e20-e21. [DOI: 10.1016/j.fsigen.2016.04.012] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2016] [Revised: 04/25/2016] [Accepted: 04/26/2016] [Indexed: 11/26/2022]
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24
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Yao J, Xing JX, Xuan JF, Wang BJ. Population data of 15 autosomal STR loci in Chinese Han population from Jiangsu Province, Eastern China. Forensic Sci Int Genet 2016; 24:112-113. [PMID: 27376693 DOI: 10.1016/j.fsigen.2016.06.015] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2016] [Revised: 06/14/2016] [Accepted: 06/20/2016] [Indexed: 10/21/2022]
Affiliation(s)
- Jun Yao
- School of Forensic Medicine, China Medical University, No.77, Puhe Road, Shenbei New District, Shenyang, Liaoning 110122, China
| | - Jia-Xin Xing
- School of Forensic Medicine, China Medical University, No.77, Puhe Road, Shenbei New District, Shenyang, Liaoning 110122, China
| | - Jin-Feng Xuan
- School of Forensic Medicine, China Medical University, No.77, Puhe Road, Shenbei New District, Shenyang, Liaoning 110122, China
| | - Bao-Jie Wang
- School of Forensic Medicine, China Medical University, No.77, Puhe Road, Shenbei New District, Shenyang, Liaoning 110122, China.
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25
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He Y, Chen X, Duan Y, Xia Y, He W, Wu J, Xu B. Allele frequencies for fifteen autosomal STR loci in a Nakhi population from Yunnan Province, Southwest China. Forensic Sci Int Genet 2015; 21:e13-4. [PMID: 26725035 DOI: 10.1016/j.fsigen.2015.12.003] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2015] [Revised: 11/08/2015] [Accepted: 12/06/2015] [Indexed: 11/19/2022]
Affiliation(s)
- Yujie He
- Department of Criminal Science and Technology, Lijiang Police Station, Lijiang, PR China.
| | - Xueyun Chen
- Kunming Medical University, Kunming, Yunnan, PR China.
| | - Yonghong Duan
- Department of Criminal Science and Technology, Lijiang Police Station, Lijiang, PR China.
| | - Yunen Xia
- Department of Criminal Science and Technology, Lijiang Police Station, Lijiang, PR China.
| | - Wenjun He
- Department of Criminal Science and Technology, Lijiang Police Station, Lijiang, PR China.
| | - Jiangqin Wu
- Department of Criminal Science and Technology, Lijiang Police Station, Lijiang, PR China.
| | - Bingying Xu
- Kunming Medical University, Kunming, Yunnan, PR China.
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26
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Shafique M, Hussain M, Shan MA, Shahzad M, Hussain S, Hussain N, Ehsan F, Perveen R, Iqbal M. Genetic diversity of 15 autosomal STR loci in the population of Southern Punjab Pakistan. Forensic Sci Int Genet 2015; 19:e1-e2. [DOI: 10.1016/j.fsigen.2015.05.013] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2014] [Revised: 05/13/2015] [Accepted: 05/17/2015] [Indexed: 11/30/2022]
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27
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Li Y, Hong Y, Li X, Yang J, Li L, Huang Y, Wang C, Li H, Xu B. Allele frequency of 19 autosomal STR loci in the Bai population from the southwestern region of mainland China. Electrophoresis 2015; 36:2498-503. [DOI: 10.1002/elps.201500129] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2015] [Revised: 05/16/2015] [Accepted: 05/19/2015] [Indexed: 11/09/2022]
Affiliation(s)
- Yi Li
- Department of Criminal Science and Technology; Dali Police Station; Dali P. R. China
| | - Yine Hong
- Department of Criminal Science and Technology; Dali Police Station; Dali P. R. China
| | - Xiujiang Li
- Department of Criminal Science and Technology; Dali Police Station; Dali P. R. China
| | - Jinmeng Yang
- Department of Criminal Science and Technology; Dali Police Station; Dali P. R. China
| | - Lanjiang Li
- Kunming Medical University; Kunming P. R. China
| | - Ying Huang
- Kunming Medical University; Kunming P. R. China
| | - Chuanchao Wang
- State Key Laboratory of Genetic Engineering, and Ministry of Education Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center for Genetics and Development; School of Life Sciences, Fudan University; Shanghai P. R. China
| | - Hui Li
- State Key Laboratory of Genetic Engineering, and Ministry of Education Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center for Genetics and Development; School of Life Sciences, Fudan University; Shanghai P. R. China
| | - Bingying Xu
- Kunming Medical University; Kunming P. R. China
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28
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Xie B, Chen L, Yang Y, Lv Y, Chen J, Shi Y, Chen C, Zhao H, Yu Z, Liu Y, Fang X, Yan J. Genetic distribution of 39 STR loci in 1027 unrelated Han individuals from Northern China. Forensic Sci Int Genet 2015; 19:205-206. [PMID: 26264960 DOI: 10.1016/j.fsigen.2015.07.019] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2015] [Revised: 07/26/2015] [Accepted: 07/28/2015] [Indexed: 11/19/2022]
Affiliation(s)
- Bingbing Xie
- CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Liang Chen
- Crime Science & Technology Research center of Qinghai Public Security Department, Qinghai 810001, China
| | - Yaran Yang
- CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China
| | - Yuexin Lv
- Beijing Microread Genetics Co., Ltd, Beijing 100044, China
| | - Jing Chen
- CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China
| | - Yan Shi
- Beijing Tongda Shoucheng Institute of Forensic Science, Beijing 100192, China
| | - Chong Chen
- Beijing Tongda Shoucheng Institute of Forensic Science, Beijing 100192, China
| | - Hongyu Zhao
- Beijing Microread Genetics Co., Ltd, Beijing 100044, China
| | - Zailiang Yu
- Beijing Microread Genetics Co., Ltd, Beijing 100044, China
| | - Yacheng Liu
- Beijing Tongda Shoucheng Institute of Forensic Science, Beijing 100192, China
| | - Xiangdong Fang
- CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China
| | - Jiangwei Yan
- CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.
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29
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Lei L, Xu J, Du Q, Fu L, Zhang X, Yu F, Ma C, Cong B, Li S. Genetic polymorphism of the 26 short tandem repeat loci in the Chinese Hebei Han population using two commercial forensic kits. Mol Biol Rep 2014; 42:217-25. [DOI: 10.1007/s11033-014-3761-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2013] [Accepted: 09/19/2014] [Indexed: 10/24/2022]
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30
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Wang HD, Wu D, Feng ZQ, Jing ZA, Li T, Guo QN, Zhang XP, Hou QF, Guo LJ, Kang B, Zhang H, Zhu BF, Liao SX. Genetic polymorphisms of 20 short tandem repeat loci from the Han population in Henan, China. Electrophoresis 2014. [DOI: 10.1002/elps.201300597] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Hong-Dan Wang
- Medical Genetic Institute of Henan Province; Henan Provincial People's Hospital; People's Hospital of Zhengzhou University; Zhengzhou P.R. China
- School of Medicine; Xi'an Jiaotong University; Xi'an P.R. China
| | - Dong Wu
- Medical Genetic Institute of Henan Province; Henan Provincial People's Hospital; People's Hospital of Zhengzhou University; Zhengzhou P.R. China
| | - Zhan-Qi Feng
- Department of Urology; The First People's Hospital of Zhengzhou city; Zhengzhou P.R. China
| | - Zhi-An Jing
- Department of Urology; The First People's Hospital of Zhengzhou city; Zhengzhou P.R. China
| | - Tao Li
- Medical Genetic Institute of Henan Province; Henan Provincial People's Hospital; People's Hospital of Zhengzhou University; Zhengzhou P.R. China
| | - Qian-Nan Guo
- Medical Genetic Institute of Henan Province; Henan Provincial People's Hospital; People's Hospital of Zhengzhou University; Zhengzhou P.R. China
| | | | - Qiao-Fang Hou
- Medical Genetic Institute of Henan Province; Henan Provincial People's Hospital; People's Hospital of Zhengzhou University; Zhengzhou P.R. China
| | - Liang-Jie Guo
- Medical Genetic Institute of Henan Province; Henan Provincial People's Hospital; People's Hospital of Zhengzhou University; Zhengzhou P.R. China
| | - Bing Kang
- Medical Genetic Institute of Henan Province; Henan Provincial People's Hospital; People's Hospital of Zhengzhou University; Zhengzhou P.R. China
| | - Hui Zhang
- Medical Genetic Institute of Henan Province; Henan Provincial People's Hospital; People's Hospital of Zhengzhou University; Zhengzhou P.R. China
| | - Bo-Feng Zhu
- School of Medicine; Xi'an Jiaotong University; Xi'an P.R. China
| | - Shi-Xiu Liao
- Medical Genetic Institute of Henan Province; Henan Provincial People's Hospital; People's Hospital of Zhengzhou University; Zhengzhou P.R. China
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31
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Polymorphic distribution and forensic effectiveness study of eight miniSTR in Chinese Uyghur ethnic group. Mol Biol Rep 2014; 41:2371-5. [PMID: 24469714 DOI: 10.1007/s11033-014-3091-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2013] [Accepted: 01/04/2014] [Indexed: 10/25/2022]
Abstract
We obtained the allelic frequencies and forensic efficiency data for eight mini short tandem repeat loci including Penta E, D12S391, D6S1043, D2S1338, D19S433, CSF1PO, Penta D and D19S253 loci from a sample of 128 unrelated Uyghur individuals from China. The amplification products of the eight STR loci are <240 bp in size. A total of 94 alleles were observed and the corresponding allelic frequencies ranged from 0.0039 to 0.3438 in the present study. Observed genotype distributions for each locus do not show deviations from Hardy-Weinberg equilibrium expectations. The combined power of discrimination, combined power of exclusion and combined matching probability of the eight STR loci equaled to 0.999999999963373, 0.9997770 and 3.6627 × 10(-11), respectively. Because of the small fragment length of PCR products and the high degree of polymorphisms, the eight STR loci are highly beneficial for the forensic analysis of degraded DNA samples which are commonly observed in forensic cases. The STR data of the Uyghur group were compared with the previously published population STR data of other groups from different ethnic or areas, and significant differences were observed among these groups at some loci.
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32
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Tong D, Chen Y, Ou X, Chen W, Liu S, Zhang Y, Sun H. Polymorphism analysis and evaluation of 19 STR loci in the Han population of Southern China. Ann Hum Biol 2012; 40:191-6. [DOI: 10.3109/03014460.2012.750685] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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