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Novel antimicrobial ciprofloxacin-pyridinium quaternary ammonium salts with improved physicochemical properties and DNA gyrase inhibitory activity. Med Chem Res 2021. [DOI: 10.1007/s00044-021-02798-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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2
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Staniszewska M, Kuryk Ł, Gryciuk A, Kawalec J, Rogalska M, Baran J, Kowalkowska A. The Antifungal Action Mode of N-Phenacyldibromobenzimidazoles. Molecules 2021; 26:molecules26185463. [PMID: 34576932 PMCID: PMC8465355 DOI: 10.3390/molecules26185463] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2021] [Revised: 08/25/2021] [Accepted: 09/02/2021] [Indexed: 11/29/2022] Open
Abstract
Our study aimed to characterise the action mode of N-phenacyldibromobenzimidazoles against C. albicans and C. neoformans. Firstly, we selected the non-cytotoxic most active benzimidazoles based on the structure–activity relationships showing that the group of 5,6-dibromobenzimidazole derivatives are less active against C. albicans vs. 4,6-dibromobenzimidazole analogues (5e–f and 5h). The substitution of chlorine atoms to the benzene ring of the N-phenacyl substituent extended the anti-C. albicans action (5e with 2,4-Cl2 or 5f with 3,4-Cl2). The excellent results for N-phenacyldibromobenzimidazole 5h against the C. albicans reference and clinical isolate showed IC50 = 8 µg/mL and %I = 100 ± 3, respectively. Compound 5h was fungicidal against the C. neoformans isolate. Compound 5h at 160–4 µg/mL caused irreversible damage of the fungal cell membrane and accidental cell death (ACD). We reported on chitinolytic activity of 5h, in accordance with the patterns observed for the following substrates: 4-nitrophenyl-N-acetyl-β-d-glucosaminide and 4-nitrophenyl-β-d-N,N′,N″-triacetylchitothiose. Derivative 5h at 16 µg/mL: (1) it affected cell wall by inducing β-d-glucanase, (2) it caused morphological distortions and (3) osmotic instability in the C. albicans biofilm-treated. Compound 5h exerted Candida-dependent inhibition of virulence factors.
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Affiliation(s)
- Monika Staniszewska
- Centre for Advanced Materials and Technologies CEZAMAT, Warsaw University of Technology, Poleczki 19, 02-822 Warsaw, Poland;
- Correspondence: (M.S.); (A.K.)
| | - Łukasz Kuryk
- Department of Virology, National Institute of Public Health-National Institute of Hygiene, Chocimska 24, 00-791 Warsaw, Poland;
- Clinical Science, Targovax Oy, Lars Sonckin Kaari 14, Espoo Stella Luna Business Park, 02600 Espoo, Finland
| | - Aleksander Gryciuk
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego St 3, 00-664 Warsaw, Poland; (A.G.); (J.K.); (M.R.)
| | - Joanna Kawalec
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego St 3, 00-664 Warsaw, Poland; (A.G.); (J.K.); (M.R.)
| | - Marta Rogalska
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego St 3, 00-664 Warsaw, Poland; (A.G.); (J.K.); (M.R.)
| | - Joanna Baran
- Centre for Advanced Materials and Technologies CEZAMAT, Warsaw University of Technology, Poleczki 19, 02-822 Warsaw, Poland;
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego St 3, 00-664 Warsaw, Poland; (A.G.); (J.K.); (M.R.)
| | - Anna Kowalkowska
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego St 3, 00-664 Warsaw, Poland; (A.G.); (J.K.); (M.R.)
- Correspondence: (M.S.); (A.K.)
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Carvalho VSD, Gómez-Delgado L, Curto MÁ, Moreno MB, Pérez P, Ribas JC, Cortés JCG. Analysis and application of a suite of recombinant endo-β(1,3)-D-glucanases for studying fungal cell walls. Microb Cell Fact 2021; 20:126. [PMID: 34217291 PMCID: PMC8254974 DOI: 10.1186/s12934-021-01616-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Accepted: 06/19/2021] [Indexed: 12/31/2022] Open
Abstract
Background The fungal cell wall is an essential and robust external structure that protects the cell from the environment. It is mainly composed of polysaccharides with different functions, some of which are necessary for cell integrity. Thus, the process of fractionation and analysis of cell wall polysaccharides is useful for studying the function and relevance of each polysaccharide, as well as for developing a variety of practical and commercial applications. This method can be used to study the mechanisms that regulate cell morphogenesis and integrity, giving rise to information that could be applied in the design of new antifungal drugs. Nonetheless, for this method to be reliable, the availability of trustworthy commercial recombinant cell wall degrading enzymes with non-contaminating activities is vital. Results Here we examined the efficiency and reproducibility of 12 recombinant endo-β(1,3)-d-glucanases for specifically degrading the cell wall β(1,3)-d-glucan by using a fast and reliable protocol of fractionation and analysis of the fission yeast cell wall. This protocol combines enzymatic and chemical degradation to fractionate the cell wall into the four main polymers: galactomannoproteins, α-glucan, β(1,3)-d-glucan and β(1,6)-d-glucan. We found that the GH16 endo-β(1,3)-d-glucanase PfLam16A from Pyrococcus furiosus was able to completely and reproducibly degrade β(1,3)-d-glucan without causing the release of other polymers. The cell wall degradation caused by PfLam16A was similar to that of Quantazyme, a recombinant endo-β(1,3)-d-glucanase no longer commercially available. Moreover, other recombinant β(1,3)-d-glucanases caused either incomplete or excessive degradation, suggesting deficient access to the substrate or release of other polysaccharides. Conclusions The discovery of a reliable and efficient recombinant endo-β(1,3)-d-glucanase, capable of replacing the previously mentioned enzyme, will be useful for carrying out studies requiring the digestion of the fungal cell wall β(1,3)-d-glucan. This new commercial endo-β(1,3)-d-glucanase will allow the study of the cell wall composition under different conditions, along the cell cycle, in response to environmental changes or in cell wall mutants. Furthermore, this enzyme will also be greatly valuable for other practical and commercial applications such as genome research, chromosomes extraction, cell transformation, protoplast formation, cell fusion, cell disruption, industrial processes and studies of new antifungals that specifically target cell wall synthesis. Supplementary Information The online version contains supplementary material available at 10.1186/s12934-021-01616-0.
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Affiliation(s)
- Vanessa S D Carvalho
- Instituto de Biología Funcional y Genómica Zacarías González, 2. CSIC and Universidad de Salamanca, 37007, Salamanca, Spain
| | - Laura Gómez-Delgado
- Instituto de Biología Funcional y Genómica Zacarías González, 2. CSIC and Universidad de Salamanca, 37007, Salamanca, Spain
| | - M Ángeles Curto
- Instituto de Biología Funcional y Genómica Zacarías González, 2. CSIC and Universidad de Salamanca, 37007, Salamanca, Spain
| | - M Belén Moreno
- Instituto de Biología Funcional y Genómica Zacarías González, 2. CSIC and Universidad de Salamanca, 37007, Salamanca, Spain
| | - Pilar Pérez
- Instituto de Biología Funcional y Genómica Zacarías González, 2. CSIC and Universidad de Salamanca, 37007, Salamanca, Spain
| | - Juan Carlos Ribas
- Instituto de Biología Funcional y Genómica Zacarías González, 2. CSIC and Universidad de Salamanca, 37007, Salamanca, Spain.
| | - Juan Carlos G Cortés
- Instituto de Biología Funcional y Genómica Zacarías González, 2. CSIC and Universidad de Salamanca, 37007, Salamanca, Spain.
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Atanasova L, Moreno-Ruiz D, Grünwald-Gruber C, Hell V, Zeilinger S. The GPI-Anchored GH76 Protein Dfg5 Affects Hyphal Morphology and Osmoregulation in the Mycoparasite Trichoderma atroviride and Is Interconnected With MAPK Signaling. Front Microbiol 2021; 12:601113. [PMID: 33643233 PMCID: PMC7902864 DOI: 10.3389/fmicb.2021.601113] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Accepted: 01/05/2021] [Indexed: 11/13/2022] Open
Abstract
The fungal cell wall is composed of a cross-linked matrix of chitin, glucans, mannans, galactomannans, and cell wall proteins with mannan chains. Cell wall mannans are directly attached to the cell wall core, while the majority of mannoproteins is produced with a glycosylphosphatidylinositol (GPI) anchor and then transferred to β-1,6-glucan in the cell wall. In this study, we functionally characterized the transmembrane protein Dfg5 of the glycoside hydrolase family 76 (GH76) in the fungal mycoparasite Trichoderma atroviride, whose ortholog has recently been proposed to cross-link glycoproteins into the cell wall of yeast and fungi. We show that the T. atroviride Dfg5 candidate is a GPI-anchored, transmembrane, 6-hairpin member of the GH76 Dfg5 subfamily that plays an important role in hyphal morphology in this mycoparasite. Alterations in the release of proteins associated with cell wall remodeling as well as a higher amount of non-covalently bonded cell surface proteins were detected in the mutants compared to the wild-type. Gene expression analysis suggests that transcript levels of genes involved in glucan synthesis, of proteases involved in mycoparasitism, and of the Tmk1 mitogen-activated protein kinase (MAPK)-encoding gene are influenced by Dfg5, whereas Tmk3 governs Dfg5 transcription. We show that Dfg5 controls important physiological properties of T. atroviride, such as osmotic stress resistance, hyphal morphology, and cell wall stability.
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Affiliation(s)
- Lea Atanasova
- Department of Microbiology, University of Innsbruck, Innsbruck, Austria.,Department of Food Science and Technology, University of Natural Resources and Life Sciences, Vienna, Austria
| | | | - Clemens Grünwald-Gruber
- Division of Biochemistry, University of Natural Resources and Life Sciences, Vienna, Austria.,Core Facility Mass Spectrometry BOKU, University of Natural Resources and Life Sciences, Vienna, Austria
| | - Viktoria Hell
- Department of Food Science and Technology, University of Natural Resources and Life Sciences, Vienna, Austria
| | - Susanne Zeilinger
- Department of Microbiology, University of Innsbruck, Innsbruck, Austria
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Hu Y, Zhao K, Qu Y, Song X, Zhao J, Qin Y. Penicillium oxalicum S-adenosylmethionine synthetase is essential for the viability of fungal cells and the expression of genes encoding cellulolytic enzymes. Fungal Biol 2020; 125:1-11. [PMID: 33317771 DOI: 10.1016/j.funbio.2020.09.004] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Revised: 09/03/2020] [Accepted: 09/15/2020] [Indexed: 01/20/2023]
Abstract
As the universal methyl donor for methylation reactions, S-adenosylmethionine (AdoMet) plays an indispensable role in most cellular metabolic processes. AdoMet is synthesized by AdoMet synthetase. We identified the only one AdoMet synthetase (PoSasA) in filamentous fungus Penicillium oxalicum. PoSasA was widely distributed in mycelium at different growth stages. The absence of PoSasA was lethal for P. oxalicum. The misregulation of the PoSasA encoding gene affected the synthesis of extracellular cellulolytic enzymes. The expression levels of cellobiohydrolase encoding gene cbh1/cel7A, β-1-4 endoglucanase eg1/cel7B, and xylanase encoding gene xyn10A were remarkably downregulated as a result of decreased PosasA gene expression. The production of extracellular cellulases and hemicellulases was also reduced. By contrast, the overexpression of PosasA improved the production of extracellular cellulases and hemicellulases. A total of 133 putative interacting proteins with PoSasA were identified using tandem affinity purification and mass spectrometry. The results of functional enrichment on these proteins showed that they were mainly related to ATP binding, magnesium ion binding, and ATP synthetase activity. Several methyltransferases were also observed among these proteins. These results were consistent with the intrinsic feature of AdoMet synthetase. This work reveals the indispensable role of PoSasA in various biological processes.
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Affiliation(s)
- Yueyan Hu
- National Glycoengineering Research Center, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China; State Key Lab of Microbial Technology, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China.
| | - Kaili Zhao
- National Glycoengineering Research Center, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China; State Key Lab of Microbial Technology, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China.
| | - Yinbo Qu
- National Glycoengineering Research Center, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China; State Key Lab of Microbial Technology, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China.
| | - Xin Song
- National Glycoengineering Research Center, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China; State Key Lab of Microbial Technology, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China.
| | - Jian Zhao
- National Glycoengineering Research Center, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China.
| | - Yuqi Qin
- National Glycoengineering Research Center, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China; State Key Lab of Microbial Technology, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China.
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Gucwa K, Milewski S, Dymerski T, Szweda P. Investigation of the Antifungal Activity and Mode of Action of Thymus vulgaris, Citrus limonum, Pelargonium graveolens, Cinnamomum cassia, Ocimum basilicum, and Eugenia caryophyllus Essential Oils. Molecules 2018; 23:E1116. [PMID: 29738503 PMCID: PMC6099571 DOI: 10.3390/molecules23051116] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2018] [Revised: 04/29/2018] [Accepted: 05/01/2018] [Indexed: 11/16/2022] Open
Abstract
The antimicrobial activity of plant oils and extracts has been recognized for many years. In this study the activity of Thymus vulgaris, Citrus limonum, Pelargonium graveolens, Cinnamomum cassia, Ocimumbasilicum, and Eugenia caryophyllus essential oils (EOs) distributed by Pollena Aroma (Nowy Dwór Mazowiecki, Poland) was investigated against a group of 183 clinical isolates of C. albicans and 76 isolates of C. glabrata. All of the oils exhibited both fungistatic and fungicidal activity toward C. albicans and C. glabrata isolates. The highest activity was observed for cinnamon oil, with MIC (Minimum Inhibitory Concentration) values in the range 0.002⁻0.125% (v/v). The MIC values of the rest of the oils were in the range 0.005% (or less) to 2.5% (v/v). In most cases MFC (Minimum Fungicidal Concentration) values were equal to MIC or twice as high. Additionally, we examined the mode of action of selected EOs. The effect on cell wall components could not be clearly proved. Three of the tested EOs (thyme, lemon, and clove) affected cell membranes. At the same time, thyme, cinnamon, and clove oil influenced potassium ion efflux, which was not seen in the case of lemon oil. All of the tested oils demonstrated the ability to inhibit the transition of yeast to mycelium form, but the effect was the lowest in the case of cinnamon oil.
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Affiliation(s)
- Katarzyna Gucwa
- Department of Pharmaceutical Technology and Biochemistry, Faculty of Chemistry, Gdańsk University of Technology, Narutowicza 11/12 Str., 80-233 Gdańsk, Poland.
| | - Sławomir Milewski
- Department of Pharmaceutical Technology and Biochemistry, Faculty of Chemistry, Gdańsk University of Technology, Narutowicza 11/12 Str., 80-233 Gdańsk, Poland.
| | - Tomasz Dymerski
- Department of Analytical Chemistry, Faculty of Chemistry, Gdańsk University of Technology, Narutowicza 11/12 Str., 80-233 Gdańsk, Poland.
| | - Piotr Szweda
- Department of Pharmaceutical Technology and Biochemistry, Faculty of Chemistry, Gdańsk University of Technology, Narutowicza 11/12 Str., 80-233 Gdańsk, Poland.
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Pérez-Hernández A, González M, González C, van Kan JAL, Brito N. BcSUN1, a B. cinerea SUN-Family Protein, Is Involved in Virulence. Front Microbiol 2017; 8:35. [PMID: 28163701 PMCID: PMC5247446 DOI: 10.3389/fmicb.2017.00035] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2016] [Accepted: 01/06/2017] [Indexed: 12/31/2022] Open
Abstract
BcSUN1 is a glycoprotein secreted by Botrytis cinerea, an important plant pathogen that causes severe losses in agriculture worldwide. In this work, the role of BcSUN1 in different aspects of the B. cinerea biology was studied by phenotypic analysis of Bcsun1 knockout strains. We identified BcSUN1 as the only member of the Group-I SUN family of proteins encoded in the B. cinerea genome, which is expressed both in axenic culture and during infection. BcSUN1 is also weakly attached to the cellular surface and is involved in maintaining the structure of the cell wall and/or the extracellular matrix. Disruption of the Bcsun1 gene produces different cell surface alterations affecting the production of reproductive structures and adhesion to plant surface, therefore reducing B. cinerea virulence. BcSUN1 is the first member of the SUN family reported to be involved in the pathogenesis of a filamentous fungus.
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Affiliation(s)
- Alicia Pérez-Hernández
- Departamento de Bioquímica, Microbiología, Biología Celular y Genética, Universidad de La Laguna (ULL)La Laguna, Spain
| | - Mario González
- Departamento de Bioquímica, Microbiología, Biología Celular y Genética, Universidad de La Laguna (ULL)La Laguna, Spain
| | - Celedonio González
- Departamento de Bioquímica, Microbiología, Biología Celular y Genética, Universidad de La Laguna (ULL)La Laguna, Spain
| | - Jan A. L. van Kan
- Laboratory of Phytopathology, Department of Plant Sciences, Wageningen University and Research Centre (WUR)Wageningen, Netherlands
| | - Nélida Brito
- Departamento de Bioquímica, Microbiología, Biología Celular y Genética, Universidad de La Laguna (ULL)La Laguna, Spain
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Greene ER, Himmel ME, Beckham GT, Tan Z. Glycosylation of Cellulases: Engineering Better Enzymes for Biofuels. Adv Carbohydr Chem Biochem 2015; 72:63-112. [PMID: 26613815 DOI: 10.1016/bs.accb.2015.08.001] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
Cellulose in plant cell walls is the largest reservoir of renewable carbon on Earth. The saccharification of cellulose from plant biomass into soluble sugars can be achieved using fungal and bacterial cellulolytic enzymes, cellulases, and further converted into fuels and chemicals. Most fungal cellulases are both N- and O-glycosylated in their native form, yet the consequences of glycosylation on activity and structure are not fully understood. Studying protein glycosylation is challenging as glycans are extremely heterogeneous, stereochemically complex, and glycosylation is not under direct genetic control. Despite these limitations, many studies have begun to unveil the role of cellulase glycosylation, especially in the industrially relevant cellobiohydrolase from Trichoderma reesei, Cel7A. Glycosylation confers many beneficial properties to cellulases including enhanced activity, thermal and proteolytic stability, and structural stabilization. However, glycosylation must be controlled carefully as such positive effects can be dampened or reversed. Encouragingly, methods for the manipulation of glycan structures have been recently reported that employ genetic tuning of glycan-active enzymes expressed from homogeneous and heterologous fungal hosts. Taken together, these studies have enabled new strategies for the exploitation of protein glycosylation for the production of enhanced cellulases for biofuel production.
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Garvey M, Klose H, Fischer R, Lambertz C, Commandeur U. Cellulases for biomass degradation: comparing recombinant cellulase expression platforms. Trends Biotechnol 2013; 31:581-93. [DOI: 10.1016/j.tibtech.2013.06.006] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2013] [Revised: 06/21/2013] [Accepted: 06/24/2013] [Indexed: 10/26/2022]
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Kralj Kunčič M, Zajc J, Drobne D, Pipan Tkalec Z, Gunde-Cimerman N. Morphological responses to high sugar concentrations differ from adaptation to high salt concentrations in the xerophilic fungi Wallemia spp. Fungal Biol 2013; 117:466-78. [PMID: 23931114 DOI: 10.1016/j.funbio.2013.04.003] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2012] [Revised: 03/11/2013] [Accepted: 04/09/2013] [Indexed: 11/24/2022]
Abstract
Fungi from the food-borne basidiomycetous genus Wallemia, which comprises Wallemia ichthyophaga, Wallemia muriae and Wallemia sebi, are among the most xerophilic organisms described. Their morphological adaptations to life at high NaCl concentrations are reflected in increased cell-wall thickness and size of cellular aggregates. The objectives of this study were to examine their growth and to define cell morphology and any ultrastructural cell-wall changes when these fungi are grown in low and high glucose and honey concentrations, as environmental osmolytes. We analysed their growth parameters and morphological characteristics by light microscopy and transmission and scanning electron microscopy. Wallemia ichthyophaga grew slowly in all of the sugar-based media, while W. muriae and W. sebi demonstrated better growth. Wallemia ichthyophaga adapted to the high glucose and honey concentrations with formation of larger cellular aggregates, while cell-wall thickness was increased only at the high glucose concentration. Wallemia muriae and W. sebi demonstrated particularly smaller sizes of hyphal aggregates at the high glucose concentration, and different and less explicit changes in cell-wall thickness. Adaptive responses show that the phylogenetically more distant W. ichthyophaga is better adapted to high salt conditions, whereas W. muriae and W. sebi cope better with a high sugar environment.
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Affiliation(s)
- Marjetka Kralj Kunčič
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, SI-1000 Ljubljana, Slovenia
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