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Díaz-Alonso A, Rodríguez F, Riobó P, Álvarez-Salgado X, Teira E, Fernández E. Response of the toxic dinoflagellate Alexandrium minutum to exudates of the eelgrass Zostera marina. HARMFUL ALGAE 2024; 133:102605. [PMID: 38485446 DOI: 10.1016/j.hal.2024.102605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Revised: 01/15/2024] [Accepted: 02/20/2024] [Indexed: 03/19/2024]
Abstract
Biotic interactions are a key factor in the development of harmful algal blooms. Recently, a lower abundance of planktonic dinoflagellates has been reported in areas dominated by seagrass beds, suggesting a negative interaction between both groups of organisms. The interaction between planktonic dinoflagellates and marine phanerogams, as well as the way in which bacteria can affect this interaction, was studied in two experiments using a non-axenic culture of the toxic dinoflagellate Alexandrium minutum exposed to increasing additions of eelgrass (Zostera marina) exudates from old and young leaves and to the presence or absence of antibiotics. In these experiments, A. minutum abundance, growth rate and photosynthetic efficiency (Fv/Fm), as well as bacterial abundance, were measured every 48 h. Toxin concentration per cell was determined at the end of both experiments. Our results demonstrated that Z. marina exudates reduced A. minutum growth rate and, in one of the experiments, also the photosynthetic efficiency. These results are not an indirect effect mediated by the bacteria in the culture, although their growth modify the magnitude of the negative impact on the dinoflagellate growth rate. No clear pattern was observed in the variation of toxin production with the treatments.
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Affiliation(s)
| | - Francisco Rodríguez
- Centro Oceanográfico de Vigo, Instituto Español de Ocanografía, Consejo Superior de Investigaciones Científicas, Spain
| | - Pilar Riobó
- Instituto de Investigacións Mariñas, Consejo Superior de Investigaciones Científicas, Spain
| | - Xose Álvarez-Salgado
- Instituto de Investigacións Mariñas, Consejo Superior de Investigaciones Científicas, Spain
| | - Eva Teira
- Centro de Investigación Mariña, Universidade de Vigo, Vigo, Spain
| | - Emilio Fernández
- Centro de Investigación Mariña, Universidade de Vigo, Vigo, Spain
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Zhang Z, Li D, Xie R, Guo R, Nair S, Han H, Zhang G, Zhao Q, Zhang L, Jiao N, Zhang Y. Plastoquinone synthesis inhibition by tetrabromo biphenyldiol as a widespread algicidal mechanism of marine bacteria. THE ISME JOURNAL 2023; 17:1979-1992. [PMID: 37679430 PMCID: PMC10579414 DOI: 10.1038/s41396-023-01510-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Revised: 08/30/2023] [Accepted: 09/01/2023] [Indexed: 09/09/2023]
Abstract
Algae and bacteria have complex and intimate interactions in the ocean. Besides mutualism, bacteria have evolved a variety of molecular-based anti-algal strategies. However, limited by the unknown mechanism of synthesis and action of these molecules, these strategies and their global prevalence remain unknown. Here we identify a novel strategy through which a marine representative of the Gammaproteobacteria produced 3,3',5,5'-tetrabromo-2,2'-biphenyldiol (4-BP), that kills or inhibits diverse phytoplankton by inhibiting plastoquinone synthesis and its effect cascades to many other key metabolic processes of the algae. Through comparative genomic analysis between the 4-BP-producing bacterium and its algicidally inactive mutant, combined with gene function verification, we identified the gene cluster responsible for 4-BP synthesis, which contains genes encoding chorismate lyase, flavin-dependent halogenase and cytochrome P450. We demonstrated that in near in situ simulated algal blooming seawater, even low concentrations of 4-BP can cause changes in overall phytoplankton community structure with a decline in dinoflagellates and diatoms. Further analyses of the gene sequences from the Tara Oceans expeditions and 2750 whole genome sequences confirmed the ubiquitous presence of 4-BP synthetic genes in diverse bacterial members in the global ocean, suggesting that it is a bacterial tool potentially widely used in global oceans to mediate bacteria-algae antagonistic relationships.
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Affiliation(s)
- Zenghu Zhang
- Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China
- Shandong Energy Institute, Qingdao, 266101, China
- Qingdao New Energy Shandong Laboratory, Qingdao, 266101, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Dehai Li
- School of Medicine and Pharmacy, Ocean University of China, Qingdao, 266003, China
| | - Ruize Xie
- Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China
| | - Ruoyu Guo
- Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China
| | - Shailesh Nair
- Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China
| | - Huan Han
- School of Medicine and Pharmacy, Ocean University of China, Qingdao, 266003, China
| | - Guojian Zhang
- School of Medicine and Pharmacy, Ocean University of China, Qingdao, 266003, China
| | - Qun Zhao
- CAS Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic R. &A. Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China
| | - Lihua Zhang
- CAS Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic R. &A. Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China
| | - Nianzhi Jiao
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361101, China
| | - Yongyu Zhang
- Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China.
- Shandong Energy Institute, Qingdao, 266101, China.
- Qingdao New Energy Shandong Laboratory, Qingdao, 266101, China.
- University of Chinese Academy of Sciences, Beijing, 100049, China.
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Sildever S, Nishi N, Inaba N, Asakura T, Kikuchi J, Asano Y, Kobayashi T, Gojobori T, Nagai S. Monitoring harmful microalgal species and their appearance in Tokyo Bay, Japan, using metabarcoding. METABARCODING AND METAGENOMICS 2022. [DOI: 10.3897/mbmg.6.79471] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
During the recent decade, high-throughput sequencing (HTS) techniques, in particular, DNA metabarcoding, have facilitated increased detection of biodiversity, including harmful algal bloom (HAB) species. In this study, the presence of HAB species and their appearance patterns were investigated by employing molecular and light microscopy-based monitoring in Tokyo Bay, Japan. The potential co-appearance patterns between the HAB species, as well as with other eukaryotes and prokaryotes were investigated using correlation and association rule-based time-series analysis. In total, 40 unique HAB species were detected, including 12 toxin-producing HAB species previously not reported from the area. More than half of the HAB species were present throughout the sampling season (summer to autumn) and no structuring or succession patterns associated with the environmental conditions could be detected. Statistically significant (p < 0.05, rS ranging from −0.88 to 0.90) associations were found amongst the HAB species and other eukaryotic and prokaryotic species, including genera containing growth-limiting bacteria. However, significant correlations between species differed amongst the years, indicating that variability in environmental conditions between the years may have a stronger influence on the microalgal community structure and interspecies interactions than the variability during the sampling season. The association rule-based time-series analysis allowed the detection of a previously reported negative relationship between Synechococcus sp. and Skeletonema sp. in nature. Overall, the results support the applicability of metabarcoding and HTS-based microalgae monitoring, as it facilitates more precise species identification compared to light microscopy, as well as provides input for investigating potential interactions amongst different species/groups through simultaneous detection of multiple species/genera.
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Wu N, Tong M, Gou S, Zeng W, Xu Z, Jiang T. Hemolytic Activity in Relation to the Photosynthetic System in Chattonella marina and Chattonella ovata. Mar Drugs 2021; 19:336. [PMID: 34204792 PMCID: PMC8231601 DOI: 10.3390/md19060336] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Revised: 06/07/2021] [Accepted: 06/09/2021] [Indexed: 11/16/2022] Open
Abstract
Chattonella species, C. marina and C. ovata, are harmful raphidophycean flagellates known to have hemolytic effects on many marine organisms and resulting in massive ecological damage worldwide. However, knowledge of the toxigenic mechanism of these ichthyotoxic flagellates is still limited. Light was reported to be responsible for the hemolytic activity (HA) of Chattonella species. Therefore, the response of photoprotective, photosynthetic accessory pigments, the photosystem II (PSII) electron transport chain, as well as HA were investigated in non-axenic C. marina and C. ovata cultures under variable environmental conditions (light, iron and addition of photosynthetic inhibitors). HA and hydrogen peroxide (H2O2) were quantified using erythrocytes and pHPA assay. Results confirmed that% HA of Chattonella was initiated by light, but was not always elicited during cell division. Exponential growth of C. marina and C. ovata under the light over 100 µmol m-2 s-1 or iron-sufficient conditions elicited high hemolytic activity. Inhibitors of PSII reduced the HA of C. marina, but had no effect on C. ovata. The toxicological response indicated that HA in Chattonella was not associated with the photoprotective system, i.e., xanthophyll cycle and regulation of reactive oxygen species, nor the PSII electron transport chain, but most likely occurred during energy transport through the light-harvesting antenna pigments. A positive, highly significant relationship between HA and chlorophyll (chl) biosynthesis pigments, especially chl c2 and chl a, in both species, indicated that hemolytic toxin may be generated during electron/energy transfer through the chl c2 biosynthesis pathway.
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Affiliation(s)
- Ni Wu
- Key Laboratory of Aquatic Eutrophication and Control of Harmful Algal Blooms of Guangdong Higher Education Institute, Research Center of Hydrobiology, Jinan University, Guangzhou 510632, China; (N.W.); (S.G.); (W.Z.)
- South China Sea Institute of Planning and Environmental Research, State Oceanic Administration, Guangzhou 510300, China
| | - Mengmeng Tong
- Ocean College, Zhejiang University, Zhoushan 316021, China;
| | - Siyu Gou
- Key Laboratory of Aquatic Eutrophication and Control of Harmful Algal Blooms of Guangdong Higher Education Institute, Research Center of Hydrobiology, Jinan University, Guangzhou 510632, China; (N.W.); (S.G.); (W.Z.)
| | - Weiji Zeng
- Key Laboratory of Aquatic Eutrophication and Control of Harmful Algal Blooms of Guangdong Higher Education Institute, Research Center of Hydrobiology, Jinan University, Guangzhou 510632, China; (N.W.); (S.G.); (W.Z.)
| | - Zhuoyun Xu
- Ocean College, Zhejiang University, Zhoushan 316021, China;
| | - Tianjiu Jiang
- Key Laboratory of Aquatic Eutrophication and Control of Harmful Algal Blooms of Guangdong Higher Education Institute, Research Center of Hydrobiology, Jinan University, Guangzhou 510632, China; (N.W.); (S.G.); (W.Z.)
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Sylvers PH, Gobler CJ. Mitigation of harmful algal blooms caused by Alexandrium catenella and reduction in saxitoxin accumulation in bivalves using cultivable seaweeds. HARMFUL ALGAE 2021; 105:102056. [PMID: 34303515 DOI: 10.1016/j.hal.2021.102056] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Revised: 05/16/2021] [Accepted: 05/18/2021] [Indexed: 06/13/2023]
Abstract
Alexandrium catenella is a harmful algal bloom (HAB)-forming dinoflagellate that causes significant damage to the cultivation and harvest of shellfish due to its synthesis of paralytic shellfish toxins. To evaluate the potential for macroalgae aquaculture to mitigate A. catenella blooms, we determined the effects of three cultivable macroalgae - Saccharina latissima (sugar kelp), Chondrus crispus (Irish moss), and Ulva spp. - on A. catenella in culture- and field-based experiments. Co-culture growth assays of A. catenella exposed to environmentally realistic concentrations of each macroalgae showed that all species except low levels of C. crispus caused cell lysis and significant reductions in A. catenella densities relative to control treatments of 17-74% in 2-3 days and 42-96% in ~one week (p<0.05 for all assays). In a toxin accumulation experiment, S. latissima significantly lessened (p<0.05) saxitoxin (STX) accumulation in blue mussels (Mytilus edulis), keeping levels (71.80±1.98 µg STX 100 g-1) below US closure limits (80 µg STX 100 g-1) compared to the untreated control (93.47±8.11 µg STX 100 g-1). Bottle incubations of field-collected, bloom populations of A. catenella experienced significant reductions in cell densities of up to 95% when exposed to aquaculture concentrations of all three macroalgae (p<0.005 for all). The stocking of aquacultured S. latissima within mesocosms containing a bloom population of A. catenella (initial density: 3.2 × 104 cells L-1) reduced the population of A. catenella by 73% over 48 h (p<0.005) while Ulva addition caused a 54% reduction in A. catenella over 96 h (p<0.01). Among the three seaweeds, their ordered ability to inhibit A. catenella was S. latissima > Ulva spp. > C. crispus. Seaweeds' primary anti-A. catenella activity were allelopathic, while nutrient competition, pH elevation, and macroalgae-attached bacteria may have played a contributory role in some experiments. Collectively, these results suggest that the integration of macroalgae with shellfish-centric aquaculture establishments should be considered as a non-invasive, environmentally friendly, and potentially profit-generating measure to mitigate A. catenella-caused damage to the shellfish aquaculture industry.
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Affiliation(s)
- Peter H Sylvers
- School of Marine and Atmospheric Sciences, Stony Brook University, Southampton NY, United States
| | - Christopher J Gobler
- School of Marine and Atmospheric Sciences, Stony Brook University, Southampton NY, United States.
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Marine invertebrate interactions with Harmful Algal Blooms - Implications for One Health. J Invertebr Pathol 2021; 186:107555. [PMID: 33607127 DOI: 10.1016/j.jip.2021.107555] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Revised: 02/01/2021] [Accepted: 02/09/2021] [Indexed: 02/06/2023]
Abstract
Harmful Algal Blooms (HAB) are natural atypical proliferations of micro or macro algae in either marine or freshwater environments which have significant impacts on human, animal and ecosystem health. The causative HAB organisms are primarily dinoflagellates and diatoms in marine and cyanobacteria within freshwater ecosystems. Several hundred species of HABs, most commonly marine dinoflagellates affect animal and ecosystem health either directly through physical, chemical or biological impacts on surrounding organisms or indirectly through production of algal toxins which transfer through lower-level trophic organisms to higher level predators. Traditionally, a major focus of HABs has concerned their natural production of toxins which bioaccumulate in filter-feeding invertebrates, which with subsequent trophic transfer and biomagnification cause issues throughout the food web, including the human health of seafood consumers. Whilst in many regions of the world, regulations, monitoring and risk management strategies help mitigate against the impacts from HAB/invertebrate toxins upon human health, there is ever-expanding evidence describing enormous impacts upon invertebrate health, as well as the health of higher trophic level organisms and marine ecosystems. This paper provides an overview of HABs and their relationships with aquatic invertebrates, together with a review of their combined impacts on animal, human and ecosystem health. With HAB/invertebrate outbreaks expected in some regions at higher frequency and intensity in the coming decades, we discuss the needs for new science, multi-disciplinary assessment and communication which will be essential for ensuring a continued increasing supply of aquaculture foodstuffs for further generations.
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Murata H, Hara M, Yonezawa C, Komatsu T. Monitoring oyster culture rafts and seagrass meadows in Nagatsura-ura Lagoon, Sanriku Coast, Japan before and after the 2011 tsunami by remote sensing: their recoveries implying the sustainable development of coastal waters. PeerJ 2021; 9:e10727. [PMID: 33520472 PMCID: PMC7811784 DOI: 10.7717/peerj.10727] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Accepted: 12/17/2020] [Indexed: 11/20/2022] Open
Abstract
Background Coastal ecosystems are blue infrastructures that support coastal resources and also aquaculture. Seagrass meadows, one of coastal ecosystems, provide substrates for epiphytic diatoms, which are food resources for cultured filter feeder organisms. Highly intensive coastal aquaculture degrades coastal environments to decrease seagrass meadows. Therefore, efficient aquaculture management and conservation of seagrass meadows are necessary for the sustainable development of coastal waters. In ria-type bays, non-feeding aquaculture of filter feeders such as oysters, scallops, and ascidians are actively practiced along the Sanriku Coast, Japan. Before the 2011 Great East Japan Earthquake, the over-deployment of oyster culture facilities polluted the bottom environment and formed an hypoxic bottom water layer due to the organic excrements from cultured oysters. The tsunami in 2011 devastated the aquaculture facilities and seagrass meadows along the Sanriku Coast. We mapped the oyster culture rafts and seagrass meadows in Nagatsura-ura Lagoon, Sanriku Coast before and after the tsunami and monitored those and environments after the tsunami by field surveys. Methods We conducted field surveys and monitored the environmental parameters in Nagatsura-ura Lagoon every month since 2014. We used high-resolution satellite remote sensing images to map oyster culture rafts and seagrass meadows at irregular time intervals from 2006 to 2019 in order to assess their distribution. In 2019, we also used an unmanned aerial vehicle to analyze the spatial variability of the position and the number of ropes suspending oyster clumps beneath the rafts. Results In 2013, the number and distribution of the oyster culture rafts had been completely restored to the pre-tsunami conditions. The mean area of culture raft increased after the tsunami, and ropes suspending oyster clumps attached to a raft in wider space. Experienced local fishermen also developed a method to attach less ropes to a raft, which was applied to half of the oyster culture rafts to improve oyster growth. The area of seagrass meadows has been expanding since 2013. Although the lagoon had experienced frequent oyster mass mortality events in summer before the tsunami, these events have not occurred since 2011. The 2011 earthquake and tsunami deepened the sill depth and widened the entrance to enhance water exchange and improve water quality in the lagoon. These changes brought the expansion of seagrass meadows and reduction of mass mortality events to allow sustainable oyster culture in the lagoon. Mapping and monitoring of seagrass meadows and aquaculture facilities via satellite remote sensing can provide clear visualization of their temporal changes. This can in turn facilitate effective aquaculture management and conservation of coastal ecosystems, which are crucial for the sustainable development of coastal waters.
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Affiliation(s)
- Hiroki Murata
- Graduate School of Agricultural Science, Tohoku University, Sendai, Japan.,Port and Harbor Bureau, City of Yokohama, Yokohama, Japan
| | - Motoyuki Hara
- Tohoku Ecosystem-Associated Marine Science, Graduate School of Agricultural Science, Tohoku University, Sendai, Japan
| | - Chinatsu Yonezawa
- Graduate School of Agricultural Science, Tohoku University, Sendai, Japan
| | - Teruhisa Komatsu
- Faculty of Commerce, Yokohama College of Commerce, Yokohama, Japan.,Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Japan
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Distribution of Growth-Inhibiting Bacteria against the Toxic Dinoflagellate Alexandrium catenella (Group I) in Akkeshi-Ko Estuary and Akkeshi Bay, Hokkaido, Japan. APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app11010172] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The distribution of growth-inhibiting bacteria (GIB) against the toxic dinoflagellate Alexandrium catenella (Group I) was investigated targeting seagrass leaves and surface waters at the seagrass bed of Akkeshi-ko Estuary and surface waters of nearshore and offshore points of Akkeshi Bay, Japan. Weekly samplings were conducted from April to June in 2011. GIBs were detected from surface of leaves of the seagrass Zostera marina in Akkeshi-ko Estuary (7.5 × 105–4.7 × 106 colony-forming units: CFU g−1 wet leaf) and seawater at the stations in Akkeshi Bay (6.7 × 100–1.1 × 103 CFU mL−1). Sequence analyses revealed that the same bacterial strains with the same 16S rRNA sequences were isolated from the surface biofilm of Z. marina and the seawater in the Akkeshi Bay. We therefore strongly suggested that seagrass beds are the source of algicidal and growth-inhibiting bacteria in coastal ecosystems. Cells of A.catenella were not detected from seawaters in Akkeshi-ko Estuary and the coastal point of Akkeshi Bay, but frequently detected at the offshore point of Akkeshi Bay. It is suggested that A.catenella populations were suppressed by abundant GIBs derived from the seagrass bed, leading to the less toxin contamination of bivalves in Akkeshi-ko Estuary.
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Distribution of Harmful Algal Growth-Limiting Bacteria on Artificially Introduced Ulva and Natural Macroalgal Beds. APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app10165658] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
The intensity and frequency of harmful algal blooms (HABs) have increased, posing a threat to human seafood resources due to massive kills of cultured fish and toxin contamination of bivalves. In recent years, bacteria that inhibit the growth of HAB species were found to be densely populated on the biofilms of some macroalgal species, indicating the possible biological control of HABs by the artificial introduction of macroalgal beds. In this study, an artificially created Ulva pertusa bed using mobile floating cages and a natural macroalgal bed were studied to elucidate the distribution of algal growth-limiting bacteria (GLB). The density of GLB affecting fish-killing raphidophyte Chattonella antiqua, and two harmful dinoflagellates, were detected between 106 and 107 CFU g−1 wet weight on the biofilm of artificially introduced U. pertusa and 10 to 102 CFU mL−1 from adjacent seawater; however, GLB found from natural macroalgal species targeted all tested HAB species (five species), ranging between 105 and 106 CFU g−1 wet weight in density. These findings provide new ecological insights of GLB at macroalgal beds, and concurrently demonstrate the possible biological control of HABs by artificially introduced Ulva beds.
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Qin Y, Zhang C, Liu F, Chen Q, Yang Y, Wang Y, Chen G. Establishment of double probes rolling circle amplification combined with lateral flow dipstick for rapid detection of Chattonella marina. HARMFUL ALGAE 2020; 97:101857. [PMID: 32732057 DOI: 10.1016/j.hal.2020.101857] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Revised: 06/03/2020] [Accepted: 06/11/2020] [Indexed: 06/11/2023]
Abstract
Chattonella marina is one of the main algae that could cause harmful algal blooms. It has killed a large number of cultured fish in coastal areas of many countries, causing serious economic losses. Therefore, it is necessary to establish a method that can specifically detect C. marina at pre-bloom abundance, so that timely measures can be taken before this alga causes harm. In this study, a long probe, a short probe and a pair of amplification primers were first designed by using the internal transcribed spacer (ITS) sequence of C. marina as the target gene and using the CD74 gene of a distant species Gallus gallus as the base sequence. The double probes rolling circle amplification (dpRCA) system was then established with the designed probes and amplification primers. A novel detection protocol referred to as dpRCA-LFD by combining the dpRCA products and lateral flow dipstick (LFD) was finally established, which can make the detection results visible to the naked eyes. The reaction conditions of dpRCA were optimized and the optimal conditions were as follows: cycle number of ligation reaction, 12; ligation temperature, 58 °C; amplification temperature, 60 °C; and amplification time, 60 min. The specificity test that was performed using the optimized dpRCA conditions indicated that dpRCA-LFD was exclusively specific for the target alga. The tests with the genomic DNA of C. marina and the recombinant plasmid containing the ITS sequence of C. marina showed that the sensitivity of dpRCA-LFD was 100 times higher than that of conventional PCR. The detection limit (DL) for the genomic DNA was 8.3 × 10-3 ng µL-1 (8.3 × 10-3 ng per reaction), and the DL for the recombinant plasmid DNA was 7.8 copies µL-1 (7.8 copies per reaction). The practicality of the developed dpRCA-LFD was further validated by test with the spiked samples containing C. marina and field samples. The simulative test showed that the dpRCA-LFD has a DL of 10 cells mL-1. The dpRCA-LFD could successfully recognize the target cells from the field samples. In summary, the dpRCA-LFD established in this study has advantages of good specificity, high sensitivity, and easily visible detection results, and therefore is promising for the analysis of C. marina in field samples.
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Affiliation(s)
- Yue Qin
- College of Oceanology, Harbin Institute of Technology (Weihai), Wenhua West Road, 2#, Weihai, Shandong Province 264209, PR China
| | - Chunyun Zhang
- College of Oceanology, Harbin Institute of Technology (Weihai), Wenhua West Road, 2#, Weihai, Shandong Province 264209, PR China; School of Marine Sciences, Ningbo University, Ningbo, 315211, PR China.
| | - Fuguo Liu
- College of Oceanology, Harbin Institute of Technology (Weihai), Wenhua West Road, 2#, Weihai, Shandong Province 264209, PR China
| | - Qixin Chen
- College of Oceanology, Harbin Institute of Technology (Weihai), Wenhua West Road, 2#, Weihai, Shandong Province 264209, PR China
| | - Yuchen Yang
- College of Oceanology, Harbin Institute of Technology (Weihai), Wenhua West Road, 2#, Weihai, Shandong Province 264209, PR China
| | - Yuanyuan Wang
- College of Oceanology, Harbin Institute of Technology (Weihai), Wenhua West Road, 2#, Weihai, Shandong Province 264209, PR China
| | - Guofu Chen
- College of Oceanology, Harbin Institute of Technology (Weihai), Wenhua West Road, 2#, Weihai, Shandong Province 264209, PR China.
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Wells ML, Karlson B, Wulff A, Kudela R, Trick C, Asnaghi V, Berdalet E, Cochlan W, Davidson K, De Rijcke M, Dutkiewicz S, Hallegraeff G, Flynn KJ, Legrand C, Paerl H, Silke J, Suikkanen S, Thompson P, Trainer VL. Future HAB science: Directions and challenges in a changing climate. HARMFUL ALGAE 2020; 91:101632. [PMID: 32057342 DOI: 10.1016/j.hal.2019.101632] [Citation(s) in RCA: 124] [Impact Index Per Article: 31.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2019] [Accepted: 06/07/2019] [Indexed: 06/10/2023]
Abstract
There is increasing concern that accelerating environmental change attributed to human-induced warming of the planet may substantially alter the patterns, distribution and intensity of Harmful Algal Blooms (HABs). Changes in temperature, ocean acidification, precipitation, nutrient stress or availability, and the physical structure of the water column all influence the productivity, composition, and global range of phytoplankton assemblages, but large uncertainty remains about how integration of these climate drivers might shape future HABs. Presented here are the collective deliberations from a symposium on HABs and climate change where the research challenges to understanding potential linkages between HABs and climate were considered, along with new research directions to better define these linkages. In addition to the likely effects of physical (temperature, salinity, stratification, light, changing storm intensity), chemical (nutrients, ocean acidification), and biological (grazer) drivers on microalgae (senso lato), symposium participants explored more broadly the subjects of cyanobacterial HABs, benthic HABs, HAB effects on fisheries, HAB modelling challenges, and the contributions that molecular approaches can bring to HAB studies. There was consensus that alongside traditional research, HAB scientists must set new courses of research and practices to deliver the conceptual and quantitative advances required to forecast future HAB trends. These different practices encompass laboratory and field studies, long-term observational programs, retrospectives, as well as the study of socioeconomic drivers and linkages with aquaculture and fisheries. In anticipation of growing HAB problems, research on potential mitigation strategies should be a priority. It is recommended that a substantial portion of HAB research among laboratories be directed collectively at a small sub-set of HAB species and questions in order to fast-track advances in our understanding. Climate-driven changes in coastal oceanographic and ecological systems are becoming substantial, in some cases exacerbated by localized human activities. That, combined with the slow pace of decreasing global carbon emissions, signals the urgency for HAB scientists to accelerate efforts across disciplines to provide society with the necessary insights regarding future HAB trends.
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Affiliation(s)
- Mark L Wells
- School of Marine Sciences, University of Maine, Orono, ME, 04469, USA; State Key Laboratory of Satellite Ocean Environment Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, 36 Baochubei Road, Hangzhou, 310012, China.
| | - Bengt Karlson
- SMHI/Swedish Meteorological and Hydrological Institute, Forskning & utveckling, oceanografi/Research & development, oceanography, Sven Källfelts gata 15, 426 71 Västra Frölunda, Sweden
| | - Angela Wulff
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, SE405 30 Göteborg, Sweden
| | - Raphael Kudela
- Ocean Sciences Department, University of California, 1156 High Street, Santa Cruz, CA, 95064, USA
| | - Charles Trick
- Department of Biology, Western University & Interfaculty Program in Public Health, Schulich School of Medicine and Dentistry, 1151 Richmond St. N, London, ON, N6A 5B7, Canada
| | - Valentina Asnaghi
- Università degli Studi di Genova (DiSTAV), C.so Europa 26, 16132 Genova, Italy
| | - Elisa Berdalet
- Institute of Marine Sciences (ICM-CSIC), Pg. Marítim de la Barceloneta, 37-49 08003, Barcelona, Catalonia, Spain
| | - William Cochlan
- Estuary & Ocean Science Center, Romberg Tiburon Campus, San Francisco State University, 3150 Paradise Drive, Tiburon, CA, 94920-1205, USA
| | - Keith Davidson
- Scottish Association for Marine Science, Scottish Marine Institute, Oban, Argyll, PA37 1QA, Scotland, UK
| | - Maarten De Rijcke
- Flanders Marine Institute (VLIZ), InnovOcean site, Wandelaarkaai 7, 8400 Ostend, Belgium
| | - Stephanie Dutkiewicz
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Gustaaf Hallegraeff
- Institute for Marine and Antarctic Studies, University of Tasmania Private Bag 129 Hobart, TAS 7001, Australia
| | - Kevin J Flynn
- Department of Biosciences, Singleton Campus, Swansea University, Swansea, SA2 8PP, Wales, UK
| | - Catherine Legrand
- Linnaeus University, Centre for Ecology and Evolution in Microbial Model Systems, Faculty of Health and Life Sciences, SE-39182, Kalmar, Sweden
| | - Hans Paerl
- Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, NC, 28557, USA
| | - Joe Silke
- Marine Institute, Renville, Oranmore, Co. Galway, H91 R673, Ireland
| | - Sanna Suikkanen
- Finnish Environment Institute, Marine Research Centre, Latokartanonkaari 11, FI-00790 Helsinki, Finland
| | - Peter Thompson
- Marine and Atmospheric Science, CSIRO, Castray Esplanade, Hobart, TAS 7000, Australia
| | - Vera L Trainer
- Environment and Fisheries Sciences Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 2725 Montlake Blvd. E., Seattle, WA 98112, USA
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