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Dos Santos MSN, Ody LP, Kerber BD, Araujo BA, Oro CED, Wancura JHC, Mazutti MA, Zabot GL, Tres MV. New frontiers of soil fungal microbiome and its application for biotechnology in agriculture. World J Microbiol Biotechnol 2023; 39:287. [PMID: 37632593 DOI: 10.1007/s11274-023-03728-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Accepted: 08/10/2023] [Indexed: 08/28/2023]
Abstract
The fungi-based technology provided encouraging scenarios in the transition from a conventionally based economic system to the potential security of sources closely associated with the agricultural sphere such as the agriculture. In recent years, the intensification of fungi-based processes has generated significant gains, additionally to the production of materials with significant benefits and strong environmental importance. Furthermore, the growing concern for human health, especially in the agriculture scenario, has fostered the investigation of organisms with high biological and beneficial potential for use in agricultural systems. Accordingly, this study offered a comprehensive review of the diversity of the soil fungal microbiome and its main applications in a biotechnological approach aimed at agriculture and food chain-related areas. Moreover, the spectrum of opportunities and the extensive optimization platform for obtaining fungi compounds and metabolites are discussed. Finally, future perspectives regarding the insurgency of innovations and challenges on the broad rise of visionary solutions applied to the biotechnology context are provided.
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Affiliation(s)
- Maicon S N Dos Santos
- Laboratory of Agroindustrial Processes Engineering (LAPE), Federal University of Santa Maria (UFSM),, 1040, Sete de Setembro St., Center DC, Cachoeira do Sul, RS 96508-010, Brazil
| | - Lissara P Ody
- Laboratory of Agroindustrial Processes Engineering (LAPE), Federal University of Santa Maria (UFSM),, 1040, Sete de Setembro St., Center DC, Cachoeira do Sul, RS 96508-010, Brazil
| | - Bruno D Kerber
- Laboratory of Agroindustrial Processes Engineering (LAPE), Federal University of Santa Maria (UFSM),, 1040, Sete de Setembro St., Center DC, Cachoeira do Sul, RS 96508-010, Brazil
| | - Beatriz A Araujo
- Laboratory of Agroindustrial Processes Engineering (LAPE), Federal University of Santa Maria (UFSM),, 1040, Sete de Setembro St., Center DC, Cachoeira do Sul, RS 96508-010, Brazil
| | - Carolina E D Oro
- Department of Food Engineering, Integrated Regional University of Alto Uruguay and Missions, 1621, Sete de Setembro Av., Fátima, Erechim, RS 99709-910, Brazil
| | - João H C Wancura
- Department of Chemical Engineering, Federal University of Santa Maria (UFSM), 1000, Roraima Av., Camobi, Santa Maria, RS 97105-900, Brazil
| | - Marcio A Mazutti
- Department of Chemical Engineering, Federal University of Santa Maria (UFSM), 1000, Roraima Av., Camobi, Santa Maria, RS 97105-900, Brazil
| | - Giovani L Zabot
- Laboratory of Agroindustrial Processes Engineering (LAPE), Federal University of Santa Maria (UFSM),, 1040, Sete de Setembro St., Center DC, Cachoeira do Sul, RS 96508-010, Brazil
| | - Marcus V Tres
- Laboratory of Agroindustrial Processes Engineering (LAPE), Federal University of Santa Maria (UFSM),, 1040, Sete de Setembro St., Center DC, Cachoeira do Sul, RS 96508-010, Brazil.
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Carvajal M, Jeldres P, Vergara A, Lobaina E, Olivares M, Meza D, Velásquez A, Dorta F, Jorquera F, Seeger M, Cereceda-Balic F, Fadic X. Bioremoval of copper by filamentous fungi isolated from contaminated soils of Puchuncaví-Ventanas Central Chile. ENVIRONMENTAL GEOCHEMISTRY AND HEALTH 2023:10.1007/s10653-023-01493-z. [PMID: 36729229 DOI: 10.1007/s10653-023-01493-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Accepted: 01/19/2023] [Indexed: 06/18/2023]
Abstract
Pollution represents a high risk to plants, animals, and human beings, causing an imbalance and affecting the environment. Soil is considered a universal sink, containing the highest load of environmental pollution. Puchuncaví-Ventanas sector, decreed as a saturated contamination zone in 1993, is considered one of the most affected areas by industrial pollution and belongs to one of the 5 sacrifice zones of Chile. The localities of Puchuncaví and Ventanas have heavy metal pollution levels that exceed up to 99% of the limits allowed by Canadian standards. The objective of this study was to characterize heavy metal tolerance and removal potential of filamentous fungi isolated from polluted soils for their use in decontamination systems and in situ soil improvement. Six fungal strains were selected based on their tolerance and a high capability to accumulate heavy metals, achieving copper bioaccumulation of 84% (Mortierella sp. strain LG01), 49% (Clonostachys sp. strain CQ23) and 48-77.5% (Trichoderma sp. strain LM01A). Trichoderma sp. strain LM01A was able to remove 41% of copper from contaminated soil under ex situ conditions. Some fungal strains belong to beneficial fungal genera, which are used as bioproducts in agriculture. The results of this study highlighted the use of Trichoderma sp. in soils contaminated, which may be of special interest in agriculture due to the large amounts of copper sulfate still applied as a pesticide in Chile and the world.
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Affiliation(s)
- M Carvajal
- Center of Biotechnology "Dr. Daniel Alkalay Lowitt", Universidad Técnica Federico Santa María, General Bari 699, Valparaíso, Chile
- Molecular Microbiology and Environmental Biotechnology Laboratory, Department of Chemistry, Universidad Técnica Federico Santa María, Avenida España 1680, Valparaíso, Chile
| | - P Jeldres
- Center of Biotechnology "Dr. Daniel Alkalay Lowitt", Universidad Técnica Federico Santa María, General Bari 699, Valparaíso, Chile
| | - A Vergara
- Center of Biotechnology "Dr. Daniel Alkalay Lowitt", Universidad Técnica Federico Santa María, General Bari 699, Valparaíso, Chile
- Molecular Microbiology and Environmental Biotechnology Laboratory, Department of Chemistry, Universidad Técnica Federico Santa María, Avenida España 1680, Valparaíso, Chile
| | - E Lobaina
- Center of Biotechnology "Dr. Daniel Alkalay Lowitt", Universidad Técnica Federico Santa María, General Bari 699, Valparaíso, Chile
- Molecular Microbiology and Environmental Biotechnology Laboratory, Department of Chemistry, Universidad Técnica Federico Santa María, Avenida España 1680, Valparaíso, Chile
| | - M Olivares
- Center of Biotechnology "Dr. Daniel Alkalay Lowitt", Universidad Técnica Federico Santa María, General Bari 699, Valparaíso, Chile
| | - D Meza
- Center of Biotechnology "Dr. Daniel Alkalay Lowitt", Universidad Técnica Federico Santa María, General Bari 699, Valparaíso, Chile
| | - A Velásquez
- Molecular Microbiology and Environmental Biotechnology Laboratory, Department of Chemistry, Universidad Técnica Federico Santa María, Avenida España 1680, Valparaíso, Chile
- Department of Ecology, Pontificia Universidad Católica de Chile, Alameda 340, Santiago, Chile
| | - F Dorta
- Center of Biotechnology "Dr. Daniel Alkalay Lowitt", Universidad Técnica Federico Santa María, General Bari 699, Valparaíso, Chile
| | - F Jorquera
- Center of Biotechnology "Dr. Daniel Alkalay Lowitt", Universidad Técnica Federico Santa María, General Bari 699, Valparaíso, Chile
| | - M Seeger
- Center of Biotechnology "Dr. Daniel Alkalay Lowitt", Universidad Técnica Federico Santa María, General Bari 699, Valparaíso, Chile
- Molecular Microbiology and Environmental Biotechnology Laboratory, Department of Chemistry, Universidad Técnica Federico Santa María, Avenida España 1680, Valparaíso, Chile
| | - F Cereceda-Balic
- Centre for Environmental Technologies CETAM, Universidad Técnica Federico Santa María, Avenida España 1680, Valparaíso, Chile
- Department of Chemistry, Universidad Técnica Federico Santa María, Avenida España 1680, Valparaíso, Chile
| | - X Fadic
- Centre for Environmental Technologies CETAM, Universidad Técnica Federico Santa María, Avenida España 1680, Valparaíso, Chile.
- Department of Chemistry, Universidad Técnica Federico Santa María, Avenida España 1680, Valparaíso, Chile.
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Chaurasia PK, Nagraj, Sharma N, Kumari S, Yadav M, Singh S, Mani A, Yadava S, Bharati SL. Fungal assisted bio-treatment of environmental pollutants with comprehensive emphasis on noxious heavy metals: Recent updates. Biotechnol Bioeng 2023; 120:57-81. [PMID: 36253930 DOI: 10.1002/bit.28268] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Revised: 09/09/2022] [Accepted: 10/11/2022] [Indexed: 11/06/2022]
Abstract
In the present time of speedy developments and industrialization, heavy metals are being uncovered in aquatic environment and soil via refining, electroplating, processing, mining, metallurgical activities, dyeing and other several metallic and metal based industrial and synthetic activities. Heavy metals like lead (Pb), mercury (Hg), cadmium (Cd), arsenic (As), Zinc (Zn), Cobalt (Co), Iron (Fe), and many other are considered as seriously noxious and toxic for the aquatic environment, human, and other aquatic lives and have damaging influences. Such heavy metals, which are very tough to be degraded, can be managed by reducing their potential through various processes like removal, precipitation, oxidation-reduction, bio-sorption, recovery, bioaccumulation, bio-mineralization etc. Microbes are known as talented bio-agents for the heavy metals detoxification process and fungi are one of the cherished bio-sources that show noteworthy aptitude of heavy metal sorption and metal tolerance. Thus, the main objective of the authors was to come with a comprehensive review having methodological insights on the novel and recent results in the field of mycoremediation of heavy metals. This review significantly assesses the potential talent of fungi in heavy metal detoxification and thus, in environmental restoration. Many reported works, methodologies and mechanistic sights have been evaluated to explore the fungal-assisted heavy metal remediation. Herein, a compact and effectual discussion on the recent mycoremediation studies of organic pollutants like dyes, petroleum, pesticides, insecticides, herbicides, and pharmaceutical wastes have also been presented.
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Affiliation(s)
- Pankaj Kumar Chaurasia
- P. G. Department of Chemistry, L.S. College, B. R. A. Bihar University, Muzaffarpur, Bihar, India
| | - Nagraj
- P. G. Department of Chemistry, L.S. College, B. R. A. Bihar University, Muzaffarpur, Bihar, India
| | - Nagendra Sharma
- P. G. Department of Chemistry, L.S. College, B. R. A. Bihar University, Muzaffarpur, Bihar, India
| | - Sunita Kumari
- P. G. Department of Chemistry, L.S. College, B. R. A. Bihar University, Muzaffarpur, Bihar, India
| | - Mithu Yadav
- P. G. Department of Chemistry, L.S. College, B. R. A. Bihar University, Muzaffarpur, Bihar, India
| | - Sunita Singh
- Department of Chemistry, Navyug Kanya Mahavidyalaya, University of Lucknow, Lucknow, Uttar Pradesh, India
| | - Ashutosh Mani
- Department of Biotechnology, Motilal Nehru National Institute of Technology Allahabad, Prayagraj, Uttar Pradesh, India
| | - Sudha Yadava
- Department of Chemistry, D. D. U. Gorakhpur University, Gorakhpur, Uttar Pradesh, India
| | - Shashi Lata Bharati
- Department of Chemistry, North Eastern Regional Institute of Science and Technology, Nirjuli, Arunachal Pradesh, India
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Eldemerdash MM, El-Sayed ASA, Hussein HA, Teleb SS, Shehata RS. Molecular and metabolic traits of some Egyptian species of Cassia L. and Senna Mill (Fabaceae-Caesalpinioideae). BMC PLANT BIOLOGY 2022; 22:205. [PMID: 35443606 PMCID: PMC9020050 DOI: 10.1186/s12870-022-03543-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Accepted: 03/15/2022] [Indexed: 06/01/2023]
Abstract
The genus Cassia and Senna have been classified under subfamily Caesalpinioideae of family Fabaceae (Leguminosae) of order Fabales. There is a scarce taxonomical studies of the genus Cassia and Senna inhabiting Egyptian environments, thus, the main objective of the current was to revise and authenticate the phylogenetic relationship between studied taxa of the species of the genera Cassia and Senna in Egypt using the recent tools of ITS barcoding, RAPD analysis and metabolic profiling, in comparing to the traditional taxonomical features. From the cluster analysis of the traditional 27 morphological characters, the studied taxa were categorized into two major clades with an average taxonomic distance of 4.3. The clade I include Cassia fistula, C. renigera, C. javanica L subsp. nodosa and C. roughiia that belongs to series Obolospermae, and C. grandis that belongs to series Grandes. The clade (II) includes Senna surattensis and S. alata at taxonomic level 3.6. The taxonomical description of the studied taxa was confirmed from the molecular analysis of ITS sequences and RAPD analysis. The ITS sequences of the tested plants species C. fistula L, C. grandis MD4, C. javanica subsp. nodosa MD7, C. roxburghii MD5, C. renigera MD5 were deposited at genbank with accession numbers MW367973, MZ960447, MW386305, MW326753 and MW32685, respectively. While, the ITS sequences of the S. surrattensis and S. alata were deposited into genbank accession # MD14 MW367670 and MD20 MW412635, respectively. Thus, from the molecular analysis, two clades were clearly separated into Clade I of Cassia and Clade II of Senna. The cluster I represented by C. fistula, C. renigera, C. roxburghii, and C. javanica sub nodosa, and the cluster II represented by S. alata and S. surattensis. From the PCA of RAPD, a clearly discrimination between the two Taxa was observed revealing the characteristic grouping of Cassia and Senna. The species Senna alata and Senna surattensis were grouped together, but the species of C. renigera, C. javanica, C. roxburghii and C. grandis was grouped on a distinct group. The separation of Cassia and Senna species into two clusters verify the segregation of the genus Cassia L. senso lato into two distinct genera namely Senna P. and Cassia L. The morphological, molecular traits of the studied plants were authenticated from the metabolic profiling by GC-MS analysis. Among the 23 identified metabolites, four compounds namely hexadecanoic acid, methyl ester, 9-Octadecenoic acid (Z)-ethyl ester and Vitamin E were detected with fluctuated concentrations, among C. fistula, C. grandis, C. javanica subsp. nodosa and C. roxburghii. Conclusively, the traditional morphological features, molecular barcoding using ITS sequences, RAPD analysis and metabolic traits by GC-MS analysis, authenticates the taxonomical diversity of the genus Cassia and Senna.
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Affiliation(s)
- Marwa M. Eldemerdash
- Botany and Microbiology Department, Faculty of Science, Zagazig University, Zagazig, 44519 Egypt
| | - Ashraf S. A. El-Sayed
- Botany and Microbiology Department, Faculty of Science, Zagazig University, Zagazig, 44519 Egypt
| | - Hussein A. Hussein
- Botany and Microbiology Department, Faculty of Science, Zagazig University, Zagazig, 44519 Egypt
| | - Samir S. Teleb
- Botany and Microbiology Department, Faculty of Science, Zagazig University, Zagazig, 44519 Egypt
| | - Rania S. Shehata
- Botany and Microbiology Department, Faculty of Science, Zagazig University, Zagazig, 44519 Egypt
- Biology Department, Faculty of Science, Jazan University, Jazan, Saudi Arabia
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