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Zhu X, Zhang Y, Ying H, Chi H, Sun G, Zeng L. Modeling epidemic dynamics using Graph Attention based Spatial Temporal networks. PLoS One 2024; 19:e0307159. [PMID: 39008489 PMCID: PMC11249270 DOI: 10.1371/journal.pone.0307159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Accepted: 07/01/2024] [Indexed: 07/17/2024] Open
Abstract
The COVID-19 pandemic and influenza outbreaks have underscored the critical need for predictive models that can effectively integrate spatial and temporal dynamics to enable accurate epidemic forecasting. Traditional time-series analysis approaches have fallen short in capturing the intricate interplay between these factors. Recent advancements have witnessed the incorporation of graph neural networks and machine learning techniques to bridge this gap, enhancing predictive accuracy and providing novel insights into disease spread mechanisms. Notable endeavors include leveraging human mobility data, employing transfer learning, and integrating advanced models such as Transformers and Graph Convolutional Networks (GCNs) to improve forecasting performance across diverse geographies for both influenza and COVID-19. However, these models often face challenges related to data quality, model transferability, and potential overfitting, highlighting the necessity for more adaptable and robust approaches. This paper introduces the Graph Attention-based Spatial Temporal (GAST) model, which employs graph attention networks (GATs) to overcome these limitations by providing a nuanced understanding of epidemic dynamics through a sophisticated spatio-temporal analysis framework. Our contributions include the development and validation of the GAST model, demonstrating its superior forecasting capabilities for influenza and COVID-19 spread, with a particular focus on short-term, daily predictions. The model's application to both influenza and COVID-19 datasets showcases its versatility and potential to inform public health interventions across a range of infectious diseases.
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Affiliation(s)
- Xiaofeng Zhu
- School of Public Health, Xi'an Jiaotong University Health Science Center, Xi'an, China
- School of Information Engineering, Hangzhou Medical College, Hangzhou, Zhejiang, China
| | - Yi Zhang
- School of Information Engineering, Hangzhou Medical College, Hangzhou, Zhejiang, China
| | - Haoru Ying
- School of Information Engineering, Hangzhou Medical College, Hangzhou, Zhejiang, China
| | - Huanning Chi
- School of Information Engineering, Hangzhou Medical College, Hangzhou, Zhejiang, China
| | - Guanqun Sun
- School of Information Engineering, Hangzhou Medical College, Hangzhou, Zhejiang, China
| | - Lingxia Zeng
- School of Public Health, Xi'an Jiaotong University Health Science Center, Xi'an, China
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de Oliveira EV, Aragão DP, Gonçalves LMG. A New Auto-Regressive Multi-Variable Modified Auto-Encoder for Multivariate Time-Series Prediction: A Case Study with Application to COVID-19 Pandemics. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2024; 21:497. [PMID: 38673408 PMCID: PMC11049878 DOI: 10.3390/ijerph21040497] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2024] [Revised: 03/28/2024] [Accepted: 04/05/2024] [Indexed: 04/28/2024]
Abstract
The SARS-CoV-2 global pandemic prompted governments, institutions, and researchers to investigate its impact, developing strategies based on general indicators to make the most precise predictions possible. Approaches based on epidemiological models were used but the outcomes demonstrated forecasting with uncertainty due to insufficient or missing data. Besides the lack of data, machine-learning models including random forest, support vector regression, LSTM, Auto-encoders, and traditional time-series models such as Prophet and ARIMA were employed in the task, achieving remarkable results with limited effectiveness. Some of these methodologies have precision constraints in dealing with multi-variable inputs, which are important for problems like pandemics that require short and long-term forecasting. Given the under-supply in this scenario, we propose a novel approach for time-series prediction based on stacking auto-encoder structures using three variations of the same model for the training step and weight adjustment to evaluate its forecasting performance. We conducted comparison experiments with previously published data on COVID-19 cases, deaths, temperature, humidity, and air quality index (AQI) in São Paulo City, Brazil. Additionally, we used the percentage of COVID-19 cases from the top ten affected countries worldwide until May 4th, 2020. The results show 80.7% and 10.3% decrease in RMSE to entire and test data over the distribution of 50 trial-trained models, respectively, compared to the first experiment comparison. Also, model type#3 achieved 4th better overall ranking performance, overcoming the NBEATS, Prophet, and Glounts time-series models in the second experiment comparison. This model shows promising forecast capacity and versatility across different input dataset lengths, making it a prominent forecasting model for time-series tasks.
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Affiliation(s)
| | | | - Luiz Marcos Garcia Gonçalves
- Department of Computer Engineering and Automation, Federal University of Rio Grande do Norte, Av. Salgado Filho, 3000, Campus Universitário, Lagoa Nova, Natal 59078-970, RN, Brazil; (E.V.d.O.); (D.P.A.)
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3
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Farhat F, Sohail SS, Alam MT, Ubaid S, Shakil, Ashhad M, Madsen DØ. COVID-19 and beyond: leveraging artificial intelligence for enhanced outbreak control. Front Artif Intell 2023; 6:1266560. [PMID: 38028660 PMCID: PMC10663297 DOI: 10.3389/frai.2023.1266560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 10/02/2023] [Indexed: 12/01/2023] Open
Abstract
COVID-19 has brought significant changes to our political, social, and technological landscape. This paper explores the emergence and global spread of the disease and focuses on the role of Artificial Intelligence (AI) in containing its transmission. To the best of our knowledge, there has been no scientific presentation of the early pictorial representation of the disease's spread. Additionally, we outline various domains where AI has made a significant impact during the pandemic. Our methodology involves searching relevant articles on COVID-19 and AI in leading databases such as PubMed and Scopus to identify the ways AI has addressed pandemic-related challenges and its potential for further assistance. While research suggests that AI has not fully realized its potential against COVID-19, likely due to data quality and diversity limitations, we review and identify key areas where AI has been crucial in preparing the fight against any sudden outbreak of the pandemic. We also propose ways to maximize the utilization of AI's capabilities in this regard.
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Affiliation(s)
- Faiza Farhat
- Department of Zoology, Aligarh Muslim University, Aligarh, India
| | | | - Mohammed Talha Alam
- Department of Computer Science and Engineering, Jamia Hamdard, New Delhi, India
| | - Syed Ubaid
- Faculty of Electronic and Information Technology, Warsaw University of Technology, Warsaw, Poland
| | - Shakil
- Faculty of Electronic and Information Technology, Warsaw University of Technology, Warsaw, Poland
| | - Mohd Ashhad
- Department of Computer Science and Engineering, Jamia Hamdard, New Delhi, India
| | - Dag Øivind Madsen
- USN School of Business, University of South-Eastern Norway, Hønefoss, Norway
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Shoko C, Sigauke C. Short-term forecasting of COVID-19 using support vector regression: An application using Zimbabwean data. Am J Infect Control 2023; 51:1095-1107. [PMID: 37001592 PMCID: PMC10060190 DOI: 10.1016/j.ajic.2023.03.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2022] [Revised: 03/14/2023] [Accepted: 03/15/2023] [Indexed: 03/31/2023]
Abstract
BACKGROUND This study aims to show that including pairwise hierarchical interactions of covariates and combining forecasts from individual models improves prediction accuracy. METHODS The least absolute shrinkage and selection operator via hierarchical pairwise interaction is used in selecting variables that are not correlated and with the greatest predictive power in single forecast models (Gradient boosting method [GBM], Generalized additive models [GAMs], Support vector regression [SVR]) are used in the analysis. The best model was selected based on the mean absolute error (MAE), the best key performance indicator for skewed data. Forecasts from the 5 models were combined using linear quantile regression averaging (LQRA). Box and Whiskers plots are used to diagnose the overall performance of fitted models. RESULTS Single forecast models (GBM, GAMs, and SVRs) show that including pairwise interactions improves forecast accuracy. The SVR model with interactions based on the radial basis kernel function is the best from single forecast models with the lowest MAE. Combining point forecasts from all the single forecast models using the LQRA approach further reduces the MAE. However, based on the Box and Whiskers plot, the SVR model with pairwise interactions has the smallest range. CONCLUSIONS Based on the key performance indicators, combining predictions from several individual models improves forecast accuracy. However, overall, the SVM with pairwise hierarchical interactions outperforms all the other models.
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Affiliation(s)
- Claris Shoko
- Department of Statistics, Faculty of Social Sciences, University of Botswana, Gaborone, Botswana.
| | - Caston Sigauke
- Department of Mathematical and Computational Sciences, University of Venda, Limpopo, South Africa.
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Liu J, Bellows B, Hu XJ, Wu J, Zhou Z, Soteros C, Wang L. A new time-varying coefficient regression approach for analyzing infectious disease data. Sci Rep 2023; 13:14687. [PMID: 37673956 PMCID: PMC10482960 DOI: 10.1038/s41598-023-41551-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Accepted: 08/28/2023] [Indexed: 09/08/2023] Open
Abstract
Since the beginning of the global pandemic of Coronavirus (SARS-COV-2), there has been many studies devoted to predicting the COVID-19 related deaths/hospitalizations. The aim of our work is to (1) explore the lagged dependence between the time series of case counts and the time series of death counts; and (2) utilize such a relationship for prediction. The proposed approach can also be applied to other infectious diseases or wherever dynamics in lagged dependence are of primary interest. Different from the previous studies, we focus on time-varying coefficient models to account for the evolution of the coronavirus. Using two different types of time-varying coefficient models, local polynomial regression models and piecewise linear regression models, we analyze the province-level data in Canada as well as country-level data using cumulative counts. We use out-of-sample prediction to evaluate the model performance. Based on our data analyses, both time-varying coefficient modeling strategies work well. Local polynomial regression models generally work better than piecewise linear regression models, especially when the pattern of the relationship between the two time series of counts gets more complicated (e.g., more segments are needed to portray the pattern). Our proposed methods can be easily and quickly implemented via existing R packages.
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Affiliation(s)
- Juxin Liu
- Department of Mathematics and Statistics, University of Saskatchewan, Saskatoon, S7N 5E6, Canada.
| | - Brandon Bellows
- Department of Mathematics and Statistics, University of Saskatchewan, Saskatoon, S7N 5E6, Canada
| | - X Joan Hu
- Department of Statistics and Actuarial Science, Simon Fraser University, Vancouver, V5A 1S6, Canada
| | - Jianhong Wu
- Department of Mathematics and Statistics, York University, Toronto, M3J 1P3, Canada
| | - Zhou Zhou
- Department of Statistical Sciences, University of Toronto, Toronto, M5G 1X6, Canada
| | - Chris Soteros
- Department of Mathematics and Statistics, University of Saskatchewan, Saskatoon, S7N 5E6, Canada
| | - Lin Wang
- Department of Mathematics and Statistics, University of New Brunswick, Fredericton, E3B 5A3, Canada
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Punyapornwithaya V, Arjkumpa O, Buamithup N, Kuatako N, Klaharn K, Sansamur C, Jampachaisri K. Forecasting of daily new lumpy skin disease cases in Thailand at different stages of the epidemic using fuzzy logic time series, NNAR, and ARIMA methods. Prev Vet Med 2023; 217:105964. [PMID: 37393704 DOI: 10.1016/j.prevetmed.2023.105964] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Revised: 06/08/2023] [Accepted: 06/12/2023] [Indexed: 07/04/2023]
Abstract
Lumpy skin disease (LSD) is an important transboundary disease affecting cattle in numerous countries in various continents. In Thailand, LSD is regarded as a serious threat to the cattle industry. Disease forecasting can assist authorities in formulating prevention and control policies. Therefore, the objective of this study was to compare the performance of time series models in forecasting a potential LSD epidemic in Thailand using nationwide data. For the forecasting of daily new cases, fuzzy time series (FTS), neural network auto-regressive (NNAR), and auto-regressive integrated moving average (ARIMA) models were applied to various datasets representing the different stages of the epidemic. Non-overlapping sliding and expanding window approaches were also employed to train the forecasting models. The results showed that the FTS outperformed other models in five of the seven validation datasets based on various error metrics. The predictive performance of the NNAR and ARIMA models was comparable, with NNAR outperforming ARIMA in some datasets and vice versa. Furthermore, the performance of models built from sliding and expanding window techniques was different. This is the first study to compare the forecasting abilities of the FTS, NNAR, and ARIMA models across multiple phases of the LSD epidemic. Livestock authorities and decision-makers may incorporate the forecasting techniques demonstrated herein into the LSD surveillance system to enhance its functionality and utility.
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Affiliation(s)
- Veerasak Punyapornwithaya
- Department of Veterinary Bioscience and Veterinary Public Health, Faculty of Veterinary Medicine, Chiang Mai University, Chiang Mai 50100, Thailand; Center of Excellence in Veterinary Public Health, Faculty of Veterinary Medicine, Chiang Mai University, Chiang Mai 50100, Thailand
| | - Orapun Arjkumpa
- Department of Livestock Development, Animal Health Section, The 4th Regional Livestock Office, Khon Kaen 40260, Thailand
| | - Noppawan Buamithup
- Bureau of Disease Control and Veterinary Services, Department of Livestock Development, Bangkok 10400, Thailand
| | - Noppasorn Kuatako
- Bureau of Disease Control and Veterinary Services, Department of Livestock Development, Bangkok 10400, Thailand
| | - Kunnanut Klaharn
- Bureau of Livestock Standards and Certification, Department of Livestock Development, Bangkok 10400, Thailand.
| | - Chalutwan Sansamur
- Akkhraratchakumari Veterinary College, Walailak University, Nakhon Si Thammarat 80161, Thailand
| | - Katechan Jampachaisri
- Department of Mathematics, Faculty of Science, Naresuan University, Phitsanulok 65000, Thailand.
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Qu Z, Li Y, Jiang X, Niu C. An innovative ensemble model based on multiple neural networks and a novel heuristic optimization algorithm for COVID-19 forecasting. EXPERT SYSTEMS WITH APPLICATIONS 2023; 212:118746. [PMID: 36089985 PMCID: PMC9444161 DOI: 10.1016/j.eswa.2022.118746] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Revised: 07/08/2022] [Accepted: 08/30/2022] [Indexed: 06/15/2023]
Abstract
During the global fight against the novel coronavirus pneumonia (COVID-19) epidemic, accurate outbreak trend forecasting has become vital for outbreak prevention and control. Effective COVID-19 outbreak trend prediction remains a complex and challenging issue owing to the significant fluctuations in the COVID-19 data series. Most previous studies have limitations only using individual forecasting methods for outbreak modeling, ignoring the combination of the advantages of different prediction methods, which may lead to insufficient results. Therefore, this paper develops a novel ensemble paradigm based on multiple neural networks and a novel heuristic optimization algorithm. First, a new hybrid sine cosine algorithm-whale optimization algorithm (SCWOA) is exercised on 15 benchmark tests. Second, four neural networks are used as predictors for the COVID-19 outbreak forecasting. Each predictor is given a weight, and the proposed SCWOA is used to optimize the best matching weights of the ensemble model. The daily COVID-19 series collected from three of the most-affected countries were taken as the test cases. The experimental results demonstrate that different neural network models have different performances in various complex epidemic prediction scenarios. The SCWOA-based ensemble model can outperform all comparable models with its high accuracy and robustness.
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Affiliation(s)
- Zongxi Qu
- School of Management, Lanzhou University, Lanzhou 730000, China
- Research Center for Emergency Management, Lanzhou University, Lanzhou 730000, China
| | - Yutong Li
- School of Management, Lanzhou University, Lanzhou 730000, China
- Research Center for Emergency Management, Lanzhou University, Lanzhou 730000, China
| | - Xia Jiang
- Affiliated Hospital of Northwest Minzu University/Second Provincial People's Hospital of Gansu, Lanzhou 730099, China
| | - Chunhua Niu
- School of Management, Lanzhou University, Lanzhou 730000, China
- Research Center for Emergency Management, Lanzhou University, Lanzhou 730000, China
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8
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Iftikhar H, Daniyal M, Qureshi M, Tawaiah K, Ansah RK, Afriyie JK. A hybrid forecasting technique for infection and death from the mpox virus. Digit Health 2023; 9:20552076231204748. [PMID: 37799502 PMCID: PMC10548807 DOI: 10.1177/20552076231204748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2023] [Accepted: 09/14/2023] [Indexed: 10/07/2023] Open
Abstract
Objectives The rising of new cases and death counts from the mpox virus (MPV) is alarming. In order to mitigate the impact of the MPV it is essential to have information of the virus's future position using more precise time series and stochastic models. In this present study, a hybrid forecasting system has been developed for new cases and death counts for MPV infection using the world daily cumulative confirmed and death series. Methods The original cumulative series was decomposed into new two subseries, such as a trend component and a stochastic series using the Hodrick-Prescott filter. To assess the efficacy of the proposed models, a comparative analysis with several widely recognized benchmark models, including auto-regressive (AR) model, auto-regressive moving average (ARMA) model, non-parametric auto-regressive (NPAR) model and artificial neural network (ANN), was performed. Results The introduction of two novel hybrid models, HPF 1 1 and HPF 3 4 , which demonstrated superior performance compared to all other models, as evidenced by their remarkable results in key performance indicators such as root mean square error (RMSE), mean absolute error (MAE) and mean absolute percentage error (MAPE), is a significant advancement in disease prediction. Conclusion The new models developed can be implemented in forecasting other diseases in the future. To address the current situation effectively, governments and stakeholders must implement significant changes to ensure strict adherence to standard operating procedures (SOPs) by the public. Given the anticipated continuation of increasing trends in the coming days, these measures are essential for mitigating the impact of the outbreak.
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Affiliation(s)
- Hasnain Iftikhar
- Department of Statistics, Quaid-i-Azam University, Islamabad, Pakistan
| | - Muhammad Daniyal
- Department of Statistics, The Islamia University of Bahawalpur, Bahawalpur, Pakistan
| | - Moiz Qureshi
- Department of Statistics, Shaheed Benazir Bhutto University, Shaheed Benazirabad, Pakistan
| | - Kassim Tawaiah
- Department of Mathematics and Statistics, University of Energy and Natural Resources, Sunyani, Ghana
- Department of Statistics and Actuarial Science, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
| | - Richard Kwame Ansah
- Department of Mathematics and Statistics, University of Energy and Natural Resources, Sunyani, Ghana
- Department of Mathematics, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
| | - Jonathan Kwaku Afriyie
- Department of Statistics and Actuarial Science, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
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Reveil M, Chen YH. Predicting and preventing COVID-19 outbreaks in indoor environments: an agent-based modeling study. Sci Rep 2022; 12:16076. [PMID: 36168021 PMCID: PMC9514194 DOI: 10.1038/s41598-022-18284-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Accepted: 08/09/2022] [Indexed: 11/09/2022] Open
Abstract
How to mitigate the spread of infectious diseases like COVID-19 in indoor environments remains an important research question. In this study, we propose an agent-based modeling framework to evaluate facility usage policies that aim to lower the probability of outbreaks. The proposed framework is individual-based, spatially-resolved with time resolution of up to 1 s, and takes into detailed account specific floor layouts, occupant schedules and movement. It enables decision makers to compute realistic contact networks and generate risk profiles of their facilities without relying on wearable devices, smartphone tagging or surveillance cameras. Our demonstrative modeling results indicate that not all facility occupants present the same risk of starting an outbreak, where the driver of outbreaks varies with facility layouts as well as individual occupant schedules. Therefore, generic mitigation strategies applied across all facilities should be considered inferior to tailored policies that take into account individual characteristics of the facilities of interest. The proposed modeling framework, implemented in Python and now available to the public in an open-source platform, enables such strategy evaluation.
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Spatio-temporal predictions of COVID-19 test positivity in Uppsala County, Sweden: a comparative approach. Sci Rep 2022; 12:15176. [PMID: 36071066 PMCID: PMC9450842 DOI: 10.1038/s41598-022-19155-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Accepted: 08/24/2022] [Indexed: 11/09/2022] Open
Abstract
Previous spatio-temporal COVID-19 prediction models have focused on the prediction of subsequent number of cases, and have shown varying accuracy and lack of high geographical resolution. We aimed to predict trends in COVID-19 test positivity, an important marker for planning local testing capacity and accessibility. We included a full year of information (June 29, 2020-July 4, 2021) with both direct and indirect indicators of transmission, e.g. mobility data, number of calls to the national healthcare advice line and vaccination coverage from Uppsala County, Sweden, as potential predictors. We developed four models for a 1-week-window, based on gradient boosting (GB), random forest (RF), autoregressive integrated moving average (ARIMA) and integrated nested laplace approximations (INLA). Three of the models (GB, RF and INLA) outperformed the naïve baseline model after data from a full pandemic wave became available and demonstrated moderate accuracy. An ensemble model of these three models slightly improved the average root mean square error to 0.039 compared to 0.040 for GB, RF and INLA, 0.055 for ARIMA and 0.046 for the naïve model. Our findings indicate that the collection of a wide variety of data can contribute to spatio-temporal predictions of COVID-19 test positivity.
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Shahela FA, Uddin N. Transfer Function Model for COVID-19 Deaths in USA Using Case Counts as Input Series. BULLETIN OF THE MALAYSIAN MATHEMATICAL SCIENCES SOCIETY 2022; 45:461-475. [PMID: 35729955 PMCID: PMC9199477 DOI: 10.1007/s40840-022-01332-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Revised: 05/17/2022] [Accepted: 05/22/2022] [Indexed: 05/24/2023]
Abstract
This paper presents a transfer function time series forecast model for COVID-19 deaths using reported COVID-19 case positivity counts as the input series. We have used deaths and case counts data reported by the Center for Disease Control for the USA from July 24 to December 31, 2021. To demonstrate the effectiveness of the proposed transfer function methodology, we have compared some summary results of forecast errors of the fitted transfer function model to those of an adequate autoregressive integrated moving average model and observed that the transfer function model achieved better forecast results than the autoregressive integrated moving average model. Additionally, separate autoregressive integrated moving average models for COVID-19 cases and deaths are also reported.
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Affiliation(s)
- Fahmida Akter Shahela
- Department of Statistics and Data Science, University of Central Florida, Orlando, FL 32816 USA
| | - Nizam Uddin
- Department of Statistics and Data Science, University of Central Florida, Orlando, FL 32816 USA
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Bhattacharjee A, Vishwakarma GK, Gajare N, Singh N. Time Series Analysis Using Different Forecast Methods and Case Fatality Rate for Covid‐19 Pandemic. REGIONAL SCIENCE POLICY & PRACTICE 2022. [PMCID: PMC9347860 DOI: 10.1111/rsp3.12555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
This study presents forecasting methods using time series analysis for confirmed cases, the number of deaths and recovery cases, and individual vaccination status in different states of India. It aims to forecast the confirmed cases and mortality rate and develop an artificial intelligence method and different statistical methodologies that can help predict the future of Covid‐19 cases. Various forecasting methods in time series analysis such as ARIMA, Holt's trend, naive, simple exponential smoothing, TBATS, and MAPE are extended for the study. It also involved the case fatality rate for the number of deaths and confirmed cases for respective states in India. This study includes the forecast values for the number of positive cases, cured patients, mortality rate, and case fatality rate for Covid‐19 cases. Among all forecast methods involved in this study, the naive and simple exponential smoothing method shows an increased number of positive instances and cured patients.
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Affiliation(s)
- Atanu Bhattacharjee
- Section of Biostatistics, Centre for Cancer Epidemiology Tata Memorial Center Navi Mumbai India
- Homi Bhabha National Institute Mumbai India
| | | | - Namrata Gajare
- Section of Biostatistics, Centre for Cancer Epidemiology Tata Memorial Center Navi Mumbai India
| | - Neha Singh
- Department of Mathematics & Computing Indian Institute of Technology Dhanbad Dhanbad India
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13
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Giouroukelis M, Papagianni S, Tzivellou N, Vlahogianni EI, Golias JC. Modeling the effects of the governmental responses to COVID-19 on transit demand: The case of Athens, Greece. CASE STUDIES ON TRANSPORT POLICY 2022; 10:1069-1077. [PMID: 35371920 PMCID: PMC8964442 DOI: 10.1016/j.cstp.2022.03.023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 02/14/2022] [Accepted: 03/28/2022] [Indexed: 06/14/2023]
Abstract
Short-term demand forecasting is essential for the public transit system, allowing for effective operations planning. This is especially relevant in the highly uncertain environment created by the SARS‑CoV‑2 pandemic. In this paper, we attempt to develop accurate prediction models of transit ridership in Athens, Greece, using Autoregressive Fractional Integrated time series models enhanced with SARS‑CoV‑2-related exogenous variables. The selected exogenous variables are, from the one hand, the ratio of weekly SARS‑CoV‑2 infections over the infections 3 weeks before (capturing the dynamics of the pandemic, as a proxy for fear of transmitting the disease while commuting), and from the other hand, an index of the stringency of the government's SARS‑CoV‑2-related measures and regulations. The developed ARFIMAX models have been fitted separately on bus and metro ridership data and wield comparable and statistically significant results. In both models, the exogenous variables prove to be statistically significant and their values are intuitive, suggesting a linear interrelation between them and transit ridership.
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Affiliation(s)
- Marios Giouroukelis
- Department of Transportation Planning and Engineering, School of Civil Engineering, National Technical University of Athens, 5 Iroon Polytechniou str, Athens 15 773, Greece
| | - Stella Papagianni
- Transport for Athens - OASA S.A., 15, Metsovou str, Athens 106 82, Greece
| | - Nellie Tzivellou
- Transport for Athens - OASA S.A., 15, Metsovou str, Athens 106 82, Greece
| | - Eleni I Vlahogianni
- Department of Transportation Planning and Engineering, School of Civil Engineering, National Technical University of Athens, 5 Iroon Polytechniou str, Athens 15 773, Greece
| | - John C Golias
- Department of Transportation Planning and Engineering, School of Civil Engineering, National Technical University of Athens, 5 Iroon Polytechniou str, Athens 15 773, Greece
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Guo X, Chai R, Yao Y, Mi Y, Wang Y, Feng T, Tian J, Shi B, Jia J, Liu S. Comprehensive Analysis of the COVID-19: Based on the Social-Related Indexes From NUMBEO. Front Public Health 2022; 10:793176. [PMID: 35570917 PMCID: PMC9096155 DOI: 10.3389/fpubh.2022.793176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Accepted: 03/11/2022] [Indexed: 11/30/2022] Open
Abstract
Background The COVID-19 has been spreading globally since 2019 and causes serious damage to the whole society. A macro perspective study to explore the changes of some social-related indexes of different countries is meaningful. Methods We collected nine social-related indexes and the score of COVID-safety-assessment. Data analysis is carried out using three time series models. In particular, a prediction-correction procedure was employed to explore the impact of the pandemic on the indexes of developed and developing countries. Results It shows that COVID-19 epidemic has an impact on the life of residents in various aspects, specifically in quality of life, purchasing power, and safety. Cluster analysis and bivariate statistical analysis further indicate that indexes affected by the pandemic in developed and developing countries are different. Conclusion This pandemic has altered the lives of residents in many ways. Our further research shows that the impacts of social-related indexes in developed and developing countries are different, which is bounded up with their epidemic severity and control measures. On the other hand, the climate is crucial for the control of COVID-19. Consequently, exploring the changes of social-related indexes is significative, and it is conducive to provide targeted governance strategies for various countries. Our article will contribute to countries with different levels of development pay more attention to social changes and take timely and effective measures to adjust social changes while trying to control this pandemic.
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Affiliation(s)
- Xuecan Guo
- Department of Epidemiology and Biostatistics, School of Public Health, Jilin University, Changchun, China
| | - Ruiyu Chai
- Department of Epidemiology and Biostatistics, School of Public Health, Jilin University, Changchun, China
| | - Yan Yao
- Department of Epidemiology and Biostatistics, School of Public Health, Jilin University, Changchun, China
| | - Yanbiao Mi
- Department of Computational Mathematics, School of Mathematics, Jilin University, Changchun, China
| | - Yingshuang Wang
- Department of Epidemiology and Biostatistics, School of Public Health, Jilin University, Changchun, China
| | - Tianyu Feng
- Department of Epidemiology and Biostatistics, School of Public Health, Jilin University, Changchun, China
| | - Junwei Tian
- Department of Computational Mathematics, School of Mathematics, Jilin University, Changchun, China
| | - Bocheng Shi
- Department of Computational Mathematics, School of Mathematics, Jilin University, Changchun, China
| | - Jiwei Jia
- Department of Computational Mathematics, School of Mathematics, Jilin University, Changchun, China.,Jilin National Applied Mathematical Center, Jilin University, Changchun, China
| | - Siyu Liu
- Department of Epidemiology and Biostatistics, School of Public Health, Jilin University, Changchun, China
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15
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Medeiros MC, Street A, Valladão D, Vasconcelos G, Zilberman E. Short-term Covid-19 forecast for latecomers. INTERNATIONAL JOURNAL OF FORECASTING 2022; 38:467-488. [PMID: 34658470 PMCID: PMC8511688 DOI: 10.1016/j.ijforecast.2021.09.013] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
The number of new Covid-19 cases is still high in several countries, despite vaccination efforts. A number of countries are experiencing new and severe waves of infection. Therefore, the availability of reliable forecasts for the number of cases and deaths in the coming days is of fundamental importance. We propose a simple statistical method for short-term real-time forecasting of the number of Covid-19 cases and fatalities in countries that are latecomers-i.e., countries where cases of the disease started to appear some time after others. In particular, we propose a penalized LASSO regression model with an error correction mechanism to construct a model of a latecomer country in terms of other countries that were at a similar stage of the pandemic some days before. By tracking the number of cases in those countries, we use an adaptive rolling-window scheme to forecast the number of cases and deaths in the latecomer. We apply this methodology to 45 countries and we provide detailed results for four of them: Brazil, Chile, Mexico, and Portugal. We show that the methodology performs very well when compared to alternative methods. These forecasts aim to foster better short-run management of the healthcare system and can be applied not only to countries but also to different regions within a country. Finally, the modeling framework derived in the paper can be applied to other infectious diseases.
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Affiliation(s)
- Marcelo C Medeiros
- Department of Economics, Pontifical Catholic University of Rio de Janeiro, Brazil
| | - Alexandre Street
- Department of Electrical Engineering, Pontifical Catholic University of Rio de Janeiro, Brazil
| | - Davi Valladão
- Department of Industrial Engineering, Pontifical Catholic University of Rio de Janeiro, Brazil
| | | | - Eduardo Zilberman
- Gávea Investimentos, Brazil
- Department of Economics, Pontifical Catholic University of Rio de Janeiro, Brazil
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16
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Hwang E. Prediction intervals of the COVID-19 cases by HAR models with growth rates and vaccination rates in top eight affected countries: Bootstrap improvement. CHAOS, SOLITONS, AND FRACTALS 2022; 155:111789. [PMID: 35002103 PMCID: PMC8720534 DOI: 10.1016/j.chaos.2021.111789] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 12/07/2021] [Accepted: 12/31/2021] [Indexed: 05/10/2023]
Abstract
This paper is devoted to modeling and predicting COVID-19 confirmed cases through a multiple linear regression. Especially, prediction intervals of the COVID-19 cases are extensively studied. Due to long-memory feature of the COVID-19 data, a heterogeneous autoregression (HAR) is adopted with Growth rates and Vaccination rates; it is called HAR-G-V model. Top eight affected countries are taken with their daily confirmed cases and vaccination rates. Model criteria results such as root mean square error (RMSE), mean absolute error (MAE), R 2 , AIC and BIC are reported in the HAR models with/without the two rates. The HAR-G-V model performs better than other HAR models. Out-of-sample forecasting by the HAR-G-V model is conducted. Forecast accuracy measures such as RMSE, MAE, mean absolute percentage error and root relative square error are computed. Furthermore, three types of prediction intervals are constructed by approximating residuals to normal and Laplace distributions, as well as by employing bootstrap procedure. Empirical coverage probability, average length and mean interval score are evaluated for the three prediction intervals. This work contributes three folds: a novel trial to combine both growth rates and vaccination rates in modeling COVID-19; construction and comparison of three types of prediction intervals; and an attempt to improve coverage probability and mean interval score of prediction intervals via bootstrap technique.
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Affiliation(s)
- Eunju Hwang
- Department of Applied Statistics, Gachon University, South Korea
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17
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Hybrid deep learning of social media big data for predicting the evolution of COVID-19 transmission. Knowl Based Syst 2021; 233:107417. [PMID: 34690447 PMCID: PMC8522122 DOI: 10.1016/j.knosys.2021.107417] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Revised: 07/14/2021] [Accepted: 08/18/2021] [Indexed: 11/22/2022]
Abstract
In this study, a hybrid deep-learning model termed as ODANN, built upon neural networks (NN) coupled with data assimilation and natural language processing (NLP) features extraction methods, has been constructed to concurrently process daily COVID-19 time-series records and large volumes of COVID-19 related Twitter data, as representative of the global community's aggregated emotional responses towards the current pandemic, to model the growth rate in the number of confirmed COVID-19 cases globally via a proposed G parameter. Overall, there were 3 key components to ODANN's development phase, namely: (i) data hydration and pre-processing were performed on COVID-19 related Twitter data ranging between 23 January 2020 and 10 May 2020, which amounted to over 100 million Tweets written in English language; (ii) multiple NLP features extraction methods were subsequently leveraged to encode the hydrated Twitter data into useful semantic word vectors for training ODANN under an optimal set of hyperparameters; and (iii) historical time-series data of defined characteristics were also assimilated into ODANN's selected hidden layer(s) to model the G parameter daily with a lead-time of 1 day. By far, our experimental results demonstrated that by adopting a rolling time-window size of 5 days, with respect to the number of historical time-series records for assimilating different data features, enabled ODANN to outperform other traditional time-series models and recent studies, in terms of the computed RMSE and MAE scores attained from the model's testing step. Overall, the summarized results from ODANN demonstrated its competitive edge in modelling and forecasting the growth rate in the number of COVID-19 cases globally.
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18
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da Silva TT, Francisquini R, Nascimento MCV. Meteorological and human mobility data on predicting COVID-19 cases by a novel hybrid decomposition method with anomaly detection analysis: A case study in the capitals of Brazil. EXPERT SYSTEMS WITH APPLICATIONS 2021; 182:115190. [PMID: 34025047 PMCID: PMC8130621 DOI: 10.1016/j.eswa.2021.115190] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Revised: 04/30/2021] [Accepted: 05/09/2021] [Indexed: 05/22/2023]
Abstract
In 2020, Brazil was the leading country in COVID-19 cases in Latin America, and capital cities were the most severely affected by the outbreak. Climates vary in Brazil due to the territorial extension of the country, its relief, geography, and other factors. Since the most common COVID-19 symptoms are related to the respiratory system, many researchers have studied the correlation between the number of COVID-19 cases with meteorological variables like temperature, humidity, rainfall, etc. Also, due to its high transmission rate, some researchers have analyzed the impact of human mobility on the dynamics of COVID-19 transmission. There is a dearth of literature that considers these two variables when predicting the spread of COVID-19 cases. In this paper, we analyzed the correlation between the number of COVID-19 cases and human mobility, and meteorological data in Brazilian capitals. We found that the correlation between such variables depends on the regions where the cities are located. We employed the variables with a significant correlation with COVID-19 cases to predict the number of COVID-19 infections in all Brazilian capitals and proposed a prediction method combining the Ensemble Empirical Mode Decomposition (EEMD) method with the Autoregressive Integrated Moving Average Exogenous inputs (ARIMAX) method, which we called EEMD-ARIMAX. After analyzing the results poor predictions were further investigated using a signal processing-based anomaly detection method. Computational tests showed that EEMD-ARIMAX achieved a forecast 26.73% better than ARIMAX. Moreover, an improvement of 30.69% in the average root mean squared error (RMSE) was noticed when applying the EEMD-ARIMAX method to the data normalized after the anomaly detection.
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Affiliation(s)
- Tiago Tiburcio da Silva
- Instituto de Ciência e Tecnologia, Universidade Federal de São Paulo (UNIFESP), Av. Cesare M. G. Lattes, 1201, Eugênio de Mello, São José dos Campos-SP, CEP: 12247-014, Brazil
| | - Rodrigo Francisquini
- Instituto de Ciência e Tecnologia, Universidade Federal de São Paulo (UNIFESP), Av. Cesare M. G. Lattes, 1201, Eugênio de Mello, São José dos Campos-SP, CEP: 12247-014, Brazil
| | - Mariá C V Nascimento
- Instituto de Ciência e Tecnologia, Universidade Federal de São Paulo (UNIFESP), Av. Cesare M. G. Lattes, 1201, Eugênio de Mello, São José dos Campos-SP, CEP: 12247-014, Brazil
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19
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A Deep Learning BiLSTM Encoding-Decoding Model for COVID-19 Pandemic Spread Forecasting. FRACTAL AND FRACTIONAL 2021. [DOI: 10.3390/fractalfract5040175] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The COVID-19 pandemic has widely spread with an increasing infection rate through more than 200 countries. The governments of the world need to record the confirmed infectious, recovered, and death cases for the present state and predict the cases. In favor of future case prediction, governments can impose opening and closing procedures to save human lives by slowing down the pandemic progression spread. There are several forecasting models for pandemic time series based on statistical processing and machine learning algorithms. Deep learning has been proven as an excellent tool for time series forecasting problems. This paper proposes a deep learning time-series prediction model to forecast the confirmed, recovered, and death cases. Our proposed network is based on an encoding–decoding deep learning network. Moreover, we optimize the selection of our proposed network hyper-parameters. Our proposed forecasting model was applied in Saudi Arabia. Then, we applied the proposed model to other countries. Our study covers two categories of countries that have witnessed different spread waves this year. During our experiments, we compared our proposed model and the other time-series forecasting models, which totaled fifteen prediction models: three statistical models, three deep learning models, seven machine learning models, and one prophet model. Our proposed forecasting model accuracy was assessed using several statistical evaluation criteria. It achieved the lowest error values and achieved the highest R-squared value of 0.99. Our proposed model may help policymakers to improve the pandemic spread control, and our method can be generalized for other time series forecasting tasks.
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20
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Ekinci A. Modelling and forecasting of growth rate of new COVID-19 cases in top nine affected countries: Considering conditional variance and asymmetric effect. CHAOS, SOLITONS, AND FRACTALS 2021; 151:111227. [PMID: 34253942 PMCID: PMC8264537 DOI: 10.1016/j.chaos.2021.111227] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2021] [Revised: 06/24/2021] [Accepted: 06/29/2021] [Indexed: 05/25/2023]
Abstract
COVID-19 pandemic has affected more than a hundred fifty million people and killed over three million people worldwide over the past year. During this period, different forecasting models have tried to forecast time path of COVID-19 pandemic. Unlike the COVID-19 forecasting literature based on Autoregressive Integrated Moving Average (ARIMA) modelling, in this paper new COVID-19 cases were modelled and forecasted by conditional variance and asymmetric effects employing Generalized Autoregressive Conditional Heteroscedasticity (GARCH), Threshold GARCH (TARCH) and Exponential GARCH (EGARCH) models. ARMA, ARMA-GARCH, ARMA-TGARCH and ARMA-EGARCH models were employed for one-day ahead forecasting performance for April, 2021 and three waves of COVID-19 pandemic in nine most affected countries -USA, India, Brazil, France, Russia, UK, Italy, Spain and Germany. Empirical results show that ARMA-GARCH models have better forecast performance than ARMA models by modelling both the conditional heteroskedasticity and the heavy-tailed distributions of the daily growth rate of the new confirmed cases; and asymmetric GARCH models show mixed results in terms of reducing the root mean squared error (RMSE).
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Affiliation(s)
- Aykut Ekinci
- Samsun University, Department of Economics and Finance, Samsun, Turkey
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21
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Al-Turaiki I, Almutlaq F, Alrasheed H, Alballa N. Empirical Evaluation of Alternative Time-Series Models for COVID-19 Forecasting in Saudi Arabia. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:ijerph18168660. [PMID: 34444409 PMCID: PMC8393561 DOI: 10.3390/ijerph18168660] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 08/11/2021] [Accepted: 08/12/2021] [Indexed: 12/23/2022]
Abstract
COVID-19 is a disease-causing coronavirus strain that emerged in December 2019 that led to an ongoing global pandemic. The ability to anticipate the pandemic's path is critical. This is important in order to determine how to combat and track its spread. COVID-19 data is an example of time-series data where several methods can be applied for forecasting. Although various time-series forecasting models are available, it is difficult to draw broad theoretical conclusions regarding their relative merits. This paper presents an empirical evaluation of several time-series models for forecasting COVID-19 cases, recoveries, and deaths in Saudi Arabia. In particular, seven forecasting models were trained using autoregressive integrated moving average, TBATS, exponential smoothing, cubic spline, simple exponential smoothing Holt, and HoltWinters. The models were built using publicly available daily data of COVID-19 during the period of 24 March 2020 to 5 April 2021 reported in Saudi Arabia. The experimental results indicate that the ARIMA model had a smaller prediction error in forecasting confirmed cases, which is consistent with results reported in the literature, while cubic spline showed better predictions for recoveries and deaths. As more data become available, a fluctuation in the forecasting-accuracy metrics was observed, possibly due to abrupt changes in the data.
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Affiliation(s)
- Isra Al-Turaiki
- Department of Information Technology, College of Computer and Information Sciences, King Saud University, Riyadh 11451, Saudi Arabia;
- Department of Computer Science, College of Computer and Information Sciences, King Saud University, Riyadh 11451, Saudi Arabia;
- Correspondence:
| | - Fahad Almutlaq
- Geography Department, College of Arts, King Saud University, Riyadh 11451, Saudi Arabia;
| | - Hend Alrasheed
- Department of Information Technology, College of Computer and Information Sciences, King Saud University, Riyadh 11451, Saudi Arabia;
| | - Norah Alballa
- Department of Computer Science, College of Computer and Information Sciences, King Saud University, Riyadh 11451, Saudi Arabia;
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22
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García-Cremades S, Morales-García J, Hernández-Sanjaime R, Martínez-España R, Bueno-Crespo A, Hernández-Orallo E, López-Espín JJ, Cecilia JM. Improving prediction of COVID-19 evolution by fusing epidemiological and mobility data. Sci Rep 2021; 11:15173. [PMID: 34312455 PMCID: PMC8313557 DOI: 10.1038/s41598-021-94696-2] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Accepted: 07/09/2021] [Indexed: 02/07/2023] Open
Abstract
We are witnessing the dramatic consequences of the COVID-19 pandemic which, unfortunately, go beyond the impact on the health system. Until herd immunity is achieved with vaccines, the only available mechanisms for controlling the pandemic are quarantines, perimeter closures and social distancing with the aim of reducing mobility. Governments only apply these measures for a reduced period, since they involve the closure of economic activities such as tourism, cultural activities, or nightlife. The main criterion for establishing these measures and planning socioeconomic subsidies is the evolution of infections. However, the collapse of the health system and the unpredictability of human behavior, among others, make it difficult to predict this evolution in the short to medium term. This article evaluates different models for the early prediction of the evolution of the COVID-19 pandemic to create a decision support system for policy-makers. We consider a wide branch of models including artificial neural networks such as LSTM and GRU and statistically based models such as autoregressive (AR) or ARIMA. Moreover, several consensus strategies to ensemble all models into one system are proposed to obtain better results in this uncertain environment. Finally, a multivariate model that includes mobility data provided by Google is proposed to better forecast trend changes in the 14-day CI. A real case study in Spain is evaluated, providing very accurate results for the prediction of 14-day CI in scenarios with and without trend changes, reaching 0.93 [Formula: see text], 4.16 RMSE and 1.08 MAE.
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Affiliation(s)
- Santi García-Cremades
- Center of Operations Research, Miguel Hernandez University of Elche (UMH), 03202, Elche, Spain
| | - Juan Morales-García
- Computer Science Department, Universidad Católica de Murcia (UCAM), 30107, Murcia, Spain
| | | | - Raquel Martínez-España
- Computer Science Department, Universidad Católica de Murcia (UCAM), 30107, Murcia, Spain
| | - Andrés Bueno-Crespo
- Computer Science Department, Universidad Católica de Murcia (UCAM), 30107, Murcia, Spain
| | - Enrique Hernández-Orallo
- Computer Engineering Department, Univesitat Politècnica de València (UPV), 46022, Valencia, Spain
| | - José J López-Espín
- Center of Operations Research, Miguel Hernandez University of Elche (UMH), 03202, Elche, Spain
| | - José M Cecilia
- Computer Engineering Department, Univesitat Politècnica de València (UPV), 46022, Valencia, Spain.
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23
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Abstract
COVID-19, as a global pandemic, has spread across Indonesia. Jakarta, as the capital of Indonesia, is the province with the most positive cases. The government has issued various guidelines, both at the central and regional levels. Since it began in 2021, the planned new measures, called ‘Pemberlakuan Pembatasan Kegiatan Masyarakat Darurat’, or PPKM emergency public activity restrictions, began with the possibility that the number of active cases might decrease. Accordingly, global vaccinations were also carried out, as they were in Indonesia. However, the first phase prioritized frontline health workers and high-risk elderly people. This study conducted a causal impact analysis to determine the effectiveness of PPKM in Jakarta and its vaccination program against the increase in daily new cases. Based on this test, PPKM showed a significant effect on the addition of daily new cases and recovered cases. Conversely, the vaccination program only had a significant impact on recovered cases. A forecast of the COVID-19 cases was conducted and indicated that the daily new cases showed a negative trend, although it fluctuated for the next 7 days, while death and recovered cases continued to increase. Hence, it can be said that the vaccination program has still not shown its effectiveness in decreasing the number of daily new cases while PPKM is quite effective in suppressing new cases.
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24
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Shoaib M, Salahudin H, Hammad M, Ahmad S, Khan AA, Khan MM, Baig MAI, Ahmad F, Ullah MK. Performance Evaluation of Soft Computing Approaches for Forecasting COVID-19 Pandemic Cases. SN COMPUTER SCIENCE 2021; 2:372. [PMID: 34258586 PMCID: PMC8267227 DOI: 10.1007/s42979-021-00764-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Accepted: 07/02/2021] [Indexed: 11/10/2022]
Abstract
An unexpected outbreak of deadly Covid-19 in later part of 2019 not only endangered the economies of the world but also posed threats to the cultural, social and psychological barriers of mankind. As soon as the virus emerged, scientists and researchers from all over the world started investigating the dynamics of this disease. Despite extensive investments in research, no cure has been officially found to date. This uncertain situation rises severe threats to the survival of mankind. An ultimate need of the time is to investigate the course of disease transfer and suggest a future projection of the disease transfer to be enabled to effectively tackle the always evolving situations ahead. In the present study daily new cases of COVID-19 was predicted using different forecasting techniques; Autoregressive Integrated Moving Average (ARIMA), Exponential Smoothing/Error Trend Seasonality (ETS), Artificial Neural Network Models (ANN), Gene Expression Programming (GEP), and Long Short-Term Memory (LSTM) in four countries; Pakistan, USA, India and Brazil. The dataset of new daily confirmed cases of COVID-19 from the date on which first case was registered in the respective country to 30 November 2020 is analyzed through these five forecasting models to forecast the new daily cases up to 31st January 2020. The forecasting efficiency of each model was evaluated using well known statistical parameters R 2, RMSE, and NSE. A comparative analysis of all above-mentioned models was performed. Finally, the study concluded that Long Short-Term Memory (LSTM) neural network-based forecasting model projected the future cases of COVID-19 pandemic best in all the selected four stations. The accuracy of the model ranges from coefficient of determination value of 0.85 in Brazil to 0.96 in Pakistan. NSE value for the model in India is 0. 99, 0.98 in USA and Pakistan and 0.97 in Brazil. This high-accuracy forecast of COVID-19 cases enables the projection of possible peaks in near future in the aforementioned countries and, therefore, prove to be helpful in formulating strategies to get prepared for the potential hard times ahead.
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Affiliation(s)
- Muhammad Shoaib
- Agricultural Engineering Department, Bahauddin Zakariya University, Multan, Pakistan
| | - Hamza Salahudin
- Agricultural Engineering Department, Bahauddin Zakariya University, Multan, Pakistan
| | - Muhammad Hammad
- Department of Agricultural Engineering, Bahauddin Zakariya University, Multan, Pakistan
| | - Shakil Ahmad
- NUST Institute of Civil Engineering, National University of Sciences and Technology, Islamabad, Pakistan
| | - Alamgir Akhtar Khan
- Department of Agricultural Engineering, MNS University of Agriculture, Multan, Pakistan
| | - Mudasser Muneer Khan
- Department of Civil Engineering, Bahauddin Zakariya University, Multan, Pakistan
| | | | - Fiaz Ahmad
- Department of Agricultural Engineering, Bahauddin Zakariya University, Multan, Pakistan
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25
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Babaoglu AB, Tekindal MA. Modelling the Number of People per Physician, Nurse, and Midwives in Turkey in Terms of Reproductive Health Indicators. INQUIRY: The Journal of Health Care Organization, Provision, and Financing 2021; 58:469580211020873. [PMID: 34078168 PMCID: PMC8182186 DOI: 10.1177/00469580211020873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Health worker density and distribution is critical for a strong health system and therefore has been listed among 1 of the Sustainable Development Goal (SDG) targets. The present study aims to model the number of persons per physician, nurse, and midwives in Turkey until 2030 and to make estimates for better reproductive health outcomes. We used time series of people per physician, nurse, and midwife between the years 1928 and 2018. Estimates were obtained via the Box-Jenkins and Brown Exponential Smoothing Methods. The results of this study showed that both designed models provide a high diagnostic value to predict the number of person per doctor, nurse, and midwives. The goodness of fit criteria for both models was statistically significant. The results predict a slight decrease in the number of people per physician, a more significant decrease in the number of people per nurse, but no decrease in the number of people per midwives until 2030. We argue that there will not be much progress in reproductive health indicators if the health workforce progresses with the same trend in the coming years. We recommend decision-makers to re-consider the health workforce planning, especially in terms of the number of the person per nurses, for better reproductive health outcomes.
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26
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Singh RK, Drews M, De la Sen M, Srivastava PK, Trisasongko BH, Kumar M, Pandey MK, Anand A, Singh SS, Pandey AK, Dobriyal M, Rani M, Kumar P. Highlighting the compound risk of COVID-19 and environmental pollutants using geospatial technology. Sci Rep 2021; 11:8363. [PMID: 33863975 PMCID: PMC8052456 DOI: 10.1038/s41598-021-87877-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Accepted: 04/06/2021] [Indexed: 02/06/2023] Open
Abstract
The new COVID-19 coronavirus disease has emerged as a global threat and not just to human health but also the global economy. Due to the pandemic, most countries affected have therefore imposed periods of full or partial lockdowns to restrict community transmission. This has had the welcome but unexpected side effect that existing levels of atmospheric pollutants, particularly in cities, have temporarily declined. As found by several authors, air quality can inherently exacerbate the risks linked to respiratory diseases, including COVID-19. In this study, we explore patterns of air pollution for ten of the most affected countries in the world, in the context of the 2020 development of the COVID-19 pandemic. We find that the concentrations of some of the principal atmospheric pollutants were temporarily reduced during the extensive lockdowns in the spring. Secondly, we show that the seasonality of the atmospheric pollutants is not significantly affected by these temporary changes, indicating that observed variations in COVID-19 conditions are likely to be linked to air quality. On this background, we confirm that air pollution may be a good predictor for the local and national severity of COVID-19 infections.
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Affiliation(s)
- Ram Kumar Singh
- Department of Natural Resources, TERI School of Advanced Studies, New Delhi, 110070, India
| | - Martin Drews
- Department of Technology, Management and Economics, Technical University of Denmark, 2800, Kgs. Lyngby, Denmark
| | - Manuel De la Sen
- Department of Electricity and Electronics, Institute of Research and Development of Processes IIDP, University of the Basque Country, Campus of Leioa, PO Box 48940, Leioa (Bizkaia), Spain
| | - Prashant Kumar Srivastava
- Remote Sensing Laboratory, Institute of Environment and Sustainable Development, Banaras Hindu University, Varanasi, Uttar Pradesh, 221005, India
- DST-Mahamana Centre of Excellence in Climate Change Research, Institute of Environment and Sustainable Development, Banaras Hindu University, Varanasi, Uttar Pradesh, 221005, India
| | - Bambang H Trisasongko
- Department of Soil Science and Land Resource and Geospatial Information and Technologies for the Integrative and Intelligent Agriculture (GITIIA), Bogor Agricultural University, Bogor, 16680, Indonesia
| | - Manoj Kumar
- GIS Centre, Forest Research Institute (FRI), PO: New Forest, Dehradun, 248006, India
| | - Manish Kumar Pandey
- Remote Sensing Laboratory, Institute of Environment and Sustainable Development, Banaras Hindu University, Varanasi, Uttar Pradesh, 221005, India
| | - Akash Anand
- Remote Sensing Laboratory, Institute of Environment and Sustainable Development, Banaras Hindu University, Varanasi, Uttar Pradesh, 221005, India
| | - S S Singh
- Directorate of Extension Education, Rani Lakshmi Bai Central Agricultural University, Jhansi, 284003, India
| | - A K Pandey
- College of Horticulture and Forestry, Rani Lakshmi Bai Central Agricultural University, Jhansi, 284003, India
| | - Manmohan Dobriyal
- College of Horticulture and Forestry, Rani Lakshmi Bai Central Agricultural University, Jhansi, 284003, India
| | - Meenu Rani
- Department of Geography, Kumaun University, Nainital, Uttarakhand, 263001, India
| | - Pavan Kumar
- College of Horticulture and Forestry, Rani Lakshmi Bai Central Agricultural University, Jhansi, 284003, India.
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Forecasting COVID-19 Confirmed Cases Using Empirical Data Analysis in Korea. Healthcare (Basel) 2021; 9:healthcare9030254. [PMID: 33804380 PMCID: PMC7998453 DOI: 10.3390/healthcare9030254] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 02/09/2021] [Accepted: 02/19/2021] [Indexed: 12/23/2022] Open
Abstract
From November to December 2020, the third wave of COVID-19 cases in Korea is ongoing. The government increased Seoul's social distancing to the 2.5 level, and the number of confirmed cases is increasing daily. Due to a shortage of hospital beds, treatment is difficult. Furthermore, gatherings at the end of the year and the beginning of next year are expected to worsen the effects. The purpose of this paper is to emphasize the importance of prediction timing rather than prediction of the number of confirmed cases. Thus, in this study, five groups were set according to minimum, maximum, and high variability. Through empirical data analysis, the groups were subdivided into a total of 19 cases. The cumulative number of COVID-19 confirmed cases is predicted using the auto regressive integrated moving average (ARIMA) model and compared with the actual number of confirmed cases. Through group and case-by-case prediction, forecasts can accurately determine decreasing and increasing trends. To prevent further spread of COVID-19, urgent and strong government restrictions are needed. This study will help the government and the Korea Disease Control and Prevention Agency (KDCA) to respond systematically to a future surge in confirmed cases.
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