1
|
Zhang Y, Liang Y, Xiang H, Li P, Zhan D, Ding D, Du S, Ding Y, Liu W, Qiu X, Feng H. Critical impact of pressure regulation on carbon dioxide biosynthesis. BIORESOURCE TECHNOLOGY 2024; 413:131445. [PMID: 39278365 DOI: 10.1016/j.biortech.2024.131445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2024] [Revised: 09/03/2024] [Accepted: 09/03/2024] [Indexed: 09/18/2024]
Abstract
Carbon dioxide (CO2) biosynthesis is a promising alternative to traditional chemical synthesis. However, its application in engineering is hampered by poor gas mass transfer rates. Pressurization is an effective method to enhance mass transfer and increase synthesis yield, although the underlying mechanisms remain unclear. This review examines the effects of high pressure on CO2 biosynthesis, elucidating the mechanisms behind yield enhancement from three perspectives: microbial physiological traits, gas mass transfer and synthetic pathways. The critical role of pressurization in improving microbial activity and gas transfer efficiency is emphasized, with particular attention to maintaining pressure within microbial tolerance limits to maximize yield without compromising cell structure integrity.
Collapse
Affiliation(s)
- Yanqing Zhang
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310018, Zhejiang, China; International Science and Technology Cooperation Platform for Low-Carbon Recycling of Waste and Green Development, Zhejiang Gongshang University, Hangzhou 310012, Zhejiang, China
| | - Yuxiang Liang
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Hai Xiang
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Pingli Li
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Dongqing Zhan
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Danna Ding
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Shuangwei Du
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Yangcheng Ding
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Wen Liu
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Xiawen Qiu
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Huajun Feng
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310018, Zhejiang, China; College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China; International Science and Technology Cooperation Platform for Low-Carbon Recycling of Waste and Green Development, Zhejiang Gongshang University, Hangzhou 310012, Zhejiang, China.
| |
Collapse
|
2
|
Yang Z, Wu W, Zhao Q, Angelidaki I, Arhin SG, Hua D, Zhao Y, Sun H, Liu G, Wang W. Enhanced direct gaseous CO 2 fixation into higher bio-succinic acid production and selectivity. J Environ Sci (China) 2024; 143:164-175. [PMID: 38644014 DOI: 10.1016/j.jes.2023.05.035] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 05/24/2023] [Accepted: 05/24/2023] [Indexed: 04/23/2024]
Abstract
Utilizing CO2 for bio-succinic acid production is an attractive approach to achieve carbon capture and recycling (CCR) with simultaneous production of a useful platform chemical. Actinobacillus succinogenes and Basfia succiniciproducens were selected and investigated as microbial catalysts. Firstly, the type and concentration of inorganic carbon concentration and glucose concentration were evaluated. 6 g C/L MgCO3 and 24 g C/L glucose were found to be the optimal basic operational conditions, with succinic acid production and carbon yield of over 30 g/L and over 40%, respectively. Then, for maximum gaseous CO2 fixation, carbonate was replaced with CO2 at different ratios. The "less carbonate more CO2" condition of the inorganic carbon source was set as carbonate: CO2 = 1:9 (based on the mass of carbon). This condition presented the highest availability of CO2 by well-balanced chemical reaction equilibrium and phase equilibrium, showing the best performance with regarding CO2 fixation (about 15 mg C/(L·hr)), with suppressed lactic acid accumulation. According to key enzymes analysis, the ratio of phosphoenolpyruvate carboxykinase to lactic dehydrogenase was enhanced at high ratios of gaseous CO2, which could promote glucose conversion through the succinic acid path. To further increase gaseous CO2 fixation and succinic acid production and selectivity, stepwise CO2 addition was evaluated. 50%-65% increase in inorganic carbon utilization was obtained coupled with 20%-30% increase in succinic acid selectivity. This was due to the promotion of the succinic acid branch of the glucose metabolism, while suppressing the pyruvate branch, along with the inhibition on the conversion from glucose to lactic acid.
Collapse
Affiliation(s)
- Ziyi Yang
- Biomass Energy and Environmental Engineering Research Center, Beijing University of Chemical Technology, Beijing 100029, China; College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Wanling Wu
- Biomass Energy and Environmental Engineering Research Center, Beijing University of Chemical Technology, Beijing 100029, China; College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Qing Zhao
- Biomass Energy and Environmental Engineering Research Center, Beijing University of Chemical Technology, Beijing 100029, China; College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Irini Angelidaki
- Department of Chemical and Biochemical Environmental Engineering, Technical University of Denmark, DK-2800, Kgs Lyngby, Denmark
| | - Samuel Gyebi Arhin
- Biomass Energy and Environmental Engineering Research Center, Beijing University of Chemical Technology, Beijing 100029, China; College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Dongliang Hua
- Energy Research Institute, Qilu University of Technology (Shandong Academy of Sciences), Shandong Provincial Key Laboratory of Biomass Gasification Technology, Jinan 250014, China
| | - Yuxiao Zhao
- Energy Research Institute, Qilu University of Technology (Shandong Academy of Sciences), Shandong Provincial Key Laboratory of Biomass Gasification Technology, Jinan 250014, China
| | - Hangyu Sun
- Biomass Energy and Environmental Engineering Research Center, Beijing University of Chemical Technology, Beijing 100029, China; College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Guangqing Liu
- Biomass Energy and Environmental Engineering Research Center, Beijing University of Chemical Technology, Beijing 100029, China
| | - Wen Wang
- Biomass Energy and Environmental Engineering Research Center, Beijing University of Chemical Technology, Beijing 100029, China; College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China.
| |
Collapse
|
3
|
Godar AG, Chase T, Conway D, Ravichandran D, Woodson I, Lai YJ, Song K, Rittmann BE, Wang X, Nielsen DR. 'Dark' CO 2 fixation in succinate fermentations enabled by direct CO 2 delivery via hollow fiber membrane carbonation. Bioprocess Biosyst Eng 2024; 47:223-233. [PMID: 38142425 DOI: 10.1007/s00449-023-02957-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Accepted: 11/26/2023] [Indexed: 12/26/2023]
Abstract
Anaerobic succinate fermentations can achieve high-titer, high-yield performance while fixing CO2 through the reductive branch of the tricarboxylic acid cycle. To provide the needed CO2, conventional media is supplemented with significant (up to 60 g/L) bicarbonate (HCO3-), and/or carbonate (CO32-) salts. However, producing these salts from CO2 and natural ores is thermodynamically unfavorable and, thus, energetically costly, which reduces the overall sustainability of the process. Here, a series of composite hollow fiber membranes (HFMs) were first fabricated, after which comprehensive CO2 mass transfer measurements were performed under cell-free conditions using a novel, constant-pH method. Lumen pressure and total HFM surface area were found to be linearly correlated with the flux and volumetric rate of CO2 delivery, respectively. Novel HFM bioreactors were then constructed and used to comprehensively investigate the effects of modulating the CO2 delivery rate on succinate fermentations by engineered Escherichia coli. Through appropriate tuning of the design and operating conditions, it was ultimately possible to produce up to 64.5 g/L succinate at a glucose yield of 0.68 g/g; performance approaching that of control fermentations with directly added HCO3-/CO32- salts and on par with prior studies. HFMs were further found to demonstrate a high potential for repeated reuse. Overall, HFM-based CO2 delivery represents a viable alternative to the addition of HCO3-/CO32- salts to succinate fermentations, and likely other 'dark' CO2-fixing fermentations.
Collapse
Affiliation(s)
- Amanda G Godar
- School of Life Sciences, Arizona State University, Tempe, AZ, USA
| | - Timothy Chase
- School for Engineering of Matter, Transport and Energy, Arizona State University, BDC C499C, Tempe, AZ, 85282, USA
| | - Dalton Conway
- School for Engineering of Matter, Transport and Energy, Arizona State University, BDC C499C, Tempe, AZ, 85282, USA
| | | | - Isaiah Woodson
- School for Engineering of Matter, Transport and Energy, Arizona State University, BDC C499C, Tempe, AZ, 85282, USA
| | - Yen-Jung Lai
- Biodesign Swette Center for Environmental Biotechnology, Arizona State University, Tempe, AZ, USA
| | - Kenan Song
- School of Manufacturing Systems and Networks, Arizona State University, Tempe, AZ, USA
| | - Bruce E Rittmann
- Biodesign Swette Center for Environmental Biotechnology, Arizona State University, Tempe, AZ, USA
- School of Sustainable Engineering and the Built Environment, Arizona State University, Tempe, AZ, USA
| | - Xuan Wang
- School of Life Sciences, Arizona State University, Tempe, AZ, USA
| | - David R Nielsen
- School for Engineering of Matter, Transport and Energy, Arizona State University, BDC C499C, Tempe, AZ, 85282, USA.
| |
Collapse
|
4
|
Mock J, Schühle K, Linne U, Mock M, Heider J. A Synthetic Pathway for the Production of Benzylsuccinate in Escherichia coli. Molecules 2024; 29:415. [PMID: 38257328 PMCID: PMC10818641 DOI: 10.3390/molecules29020415] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 12/21/2023] [Accepted: 12/26/2023] [Indexed: 01/24/2024] Open
Abstract
(R)-Benzylsuccinate is generated in anaerobic toluene degradation by the radical addition of toluene to fumarate and further degraded to benzoyl-CoA by a β-oxidation pathway. Using metabolic modules for benzoate transport and activation to benzoyl-CoA and the enzymes of benzylsuccinate β-oxidation, we established an artificial pathway for benzylsuccinate production in Escherichia coli, which is based on its degradation pathway running in reverse. Benzoate is supplied to the medium but needs to be converted to benzoyl-CoA by an uptake transporter and a benzoate-CoA ligase or CoA-transferase. In contrast, the second substrate succinate is endogenously produced from glucose under anaerobic conditions, and the constructed pathway includes a succinyl-CoA:benzylsuccinate CoA-transferase that activates it to the CoA-thioester. We present first evidence for the feasibility of this pathway and explore product yields under different growth conditions. Compared to aerobic cultures, the product yield increased more than 1000-fold in anaerobic glucose-fermenting cultures and showed further improvement under fumarate-respiring conditions. An important bottleneck to overcome appears to be product excretion, based on much higher recorded intracellular concentrations of benzylsuccinate, compared to those excreted. While no export system is known for benzylsuccinate, we observed an increased product yield after adding an unspecific mechanosensitive channel to the constructed pathway.
Collapse
Affiliation(s)
- Johanna Mock
- Fachbereich Biologe, Philipps-University Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany
- Synmikro Center Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany
| | - Karola Schühle
- Fachbereich Biologe, Philipps-University Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany
| | - Uwe Linne
- Synmikro Center Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany
- Fachbereich Chemie, Philipps-University Marburg, Hans-Meerwein-Str. 10, 35043 Marburg, Germany
| | - Marco Mock
- Fachbereich Biologe, Philipps-University Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany
| | - Johann Heider
- Fachbereich Biologe, Philipps-University Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany
- Synmikro Center Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany
| |
Collapse
|
5
|
Cortada-Garcia J, Daly R, Arnold SA, Burgess K. Streamlined identification of strain engineering targets for bioprocess improvement using metabolic pathway enrichment analysis. Sci Rep 2023; 13:12990. [PMID: 37563133 PMCID: PMC10415327 DOI: 10.1038/s41598-023-39661-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Accepted: 07/28/2023] [Indexed: 08/12/2023] Open
Abstract
Metabolomics is a powerful tool for the identification of genetic targets for bioprocess optimisation. However, in most cases, only the biosynthetic pathway directed to product formation is analysed, limiting the identification of these targets. Some studies have used untargeted metabolomics, allowing a more unbiased approach, but data interpretation using multivariate analysis is usually not straightforward and requires time and effort. Here we show, for the first time, the application of metabolic pathway enrichment analysis using untargeted and targeted metabolomics data to identify genetic targets for bioprocess improvement in a more streamlined way. The analysis of an Escherichia coli succinate production bioprocess with this methodology revealed three significantly modulated pathways during the product formation phase: the pentose phosphate pathway, pantothenate and CoA biosynthesis and ascorbate and aldarate metabolism. From these, the two former pathways are consistent with previous efforts to improve succinate production in Escherichia coli. Furthermore, to the best of our knowledge, ascorbate and aldarate metabolism is a newly identified target that has so far never been explored for improving succinate production in this microorganism. This methodology therefore represents a powerful tool for the streamlined identification of strain engineering targets that can accelerate bioprocess optimisation.
Collapse
Affiliation(s)
- Joan Cortada-Garcia
- Institute of Quantitative Biology, Biochemistry and Biotechnology, School of Biological Sciences, University of Edinburgh, Edinburgh, EH8 9AB, UK
| | - Rónán Daly
- Institute of Infection, Immunity and Inflammation, Glasgow Polyomics, University of Glasgow, Glasgow, G61 1QH, UK
| | - S Alison Arnold
- Ingenza Ltd., Roslin Innovation Centre, Roslin, EH25 9RG, UK
| | - Karl Burgess
- Institute of Quantitative Biology, Biochemistry and Biotechnology, School of Biological Sciences, University of Edinburgh, Edinburgh, EH8 9AB, UK.
| |
Collapse
|
6
|
Ye DY, Moon JH, Jung GY. Recent Progress in Metabolic Engineering of Escherichia coli for the Production of Various C4 and C5-Dicarboxylic Acids. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:10916-10931. [PMID: 37458388 DOI: 10.1021/acs.jafc.3c02156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/27/2023]
Abstract
As an alternative to petrochemical synthesis, well-established industrial microbes, such as Escherichia coli, are employed to produce a wide range of chemicals, including dicarboxylic acids (DCAs), which have significant potential in diverse areas including biodegradable polymers. The demand for biodegradable polymers has been steadily rising, prompting the development of efficient production pathways on four- (C4) and five-carbon (C5) DCAs derived from central carbon metabolism to meet the increased demand via the biosynthesis. In this context, E. coli is utilized to produce these DCAs through various metabolic engineering strategies, including the design or selection of metabolic pathways, pathway optimization, and enhancement of catalytic activity. This review aims to highlight the recent advancements in metabolic engineering techniques for the production of C4 and C5 DCAs in E. coli.
Collapse
Affiliation(s)
- Dae-Yeol Ye
- Department of Chemical Engineering, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang, Gyeongbuk 37673, Republic of Korea
| | - Jo Hyun Moon
- Department of Chemical Engineering, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang, Gyeongbuk 37673, Republic of Korea
| | - Gyoo Yeol Jung
- Department of Chemical Engineering, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang, Gyeongbuk 37673, Republic of Korea
- School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang, Gyeongbuk 37673, Republic of Korea
| |
Collapse
|
7
|
Ceron-Chafla P, de Vrieze J, Rabaey K, van Lier JB, Lindeboom REF. Steering the product spectrum in high-pressure anaerobic processes: CO 2 partial pressure as a novel tool in biorefinery concepts. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2023; 16:27. [PMID: 36803622 PMCID: PMC9938588 DOI: 10.1186/s13068-023-02262-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Accepted: 01/05/2023] [Indexed: 02/19/2023]
Abstract
BACKGROUND Elevated CO2 partial pressure (pCO2) has been proposed as a potential steering parameter for selective carboxylate production in mixed culture fermentation. It is anticipated that intermediate product spectrum and production rates, as well as changes in the microbial community, are (in)directly influenced by elevated pCO2. However, it remains unclear how pCO2 interacts with other operational conditions, namely substrate specificity, substrate-to-biomass (S/X) ratio and the presence of an additional electron donor, and what effect pCO2 has on the exact composition of fermentation products. Here, we investigated possible steering effects of elevated pCO2 combined with (1) mixed substrate (glycerol/glucose) provision; (2) subsequent increments in substrate concentration to increase the S/X ratio; and (3) formate as an additional electron donor. RESULTS Metabolite predominance, e.g., propionate vs. butyrate/acetate, and cell density, depended on interaction effects between pCO2-S/X ratio and pCO2-formate. Individual substrate consumption rates were negatively impacted by the interaction effect between pCO2-S/X ratio and were not re-established after lowering the S/X ratio and adding formate. The product spectrum was influenced by the microbial community composition, which in turn, was modified by substrate type and the interaction effect between pCO2-formate. High propionate and butyrate levels strongly correlated with Negativicutes and Clostridia predominance, respectively. After subsequent pressurized fermentation phases, the interaction effect between pCO2-formate enabled a shift from propionate towards succinate production when mixed substrate was provided. CONCLUSIONS Overall, interaction effects between elevated pCO2, substrate specificity, high S/X ratio and availability of reducing equivalents from formate, rather than an isolated pCO2 effect, modified the proportionality of propionate, butyrate and acetate in pressurized mixed substrate fermentations at the expense of reduced consumption rates and increased lag-phases. The interaction effect between elevated pCO2 and formate was beneficial for succinate production and biomass growth with a glycerol/glucose mixture as the substrate. The positive effect may be attributed to the availability of extra reducing equivalents, likely enhanced carbon fixating activity and hindered propionate conversion due to increased concentration of undissociated carboxylic acids.
Collapse
Affiliation(s)
- Pamela Ceron-Chafla
- Sanitary Engineering Section, Department of Water Management, Delft University of Technology, Stevinweg 1, 2628 CN, Delft, The Netherlands.
| | - Jo de Vrieze
- grid.5342.00000 0001 2069 7798Center for Microbial Ecology and Technology (CMET), Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| | - Korneel Rabaey
- grid.5342.00000 0001 2069 7798Center for Microbial Ecology and Technology (CMET), Ghent University, Coupure Links 653, 9000 Ghent, Belgium ,grid.510907.aCenter for Advanced Process Technology for Urban Resource Recovery (CAPTURE), Coupure Links 653, 9000 Ghent, Belgium
| | - Jules B. van Lier
- grid.5292.c0000 0001 2097 4740Sanitary Engineering Section, Department of Water Management, Delft University of Technology, Stevinweg 1, 2628 CN Delft, The Netherlands
| | - Ralph E. F. Lindeboom
- grid.5292.c0000 0001 2097 4740Sanitary Engineering Section, Department of Water Management, Delft University of Technology, Stevinweg 1, 2628 CN Delft, The Netherlands
| |
Collapse
|
8
|
Zhou S, Zhang M, Zhu L, Zhao X, Chen J, Chen W, Chang C. Hydrolysis of lignocellulose to succinic acid: a review of treatment methods and succinic acid applications. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2023; 16:1. [PMID: 36593503 PMCID: PMC9806916 DOI: 10.1186/s13068-022-02244-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Accepted: 12/08/2022] [Indexed: 01/03/2023]
Abstract
Succinic acid (SA) is an intermediate product of the tricarboxylic acid cycle (TCA) and is one of the most significant platform chemicals for the production of various derivatives with high added value. Due to the depletion of fossil raw materials and the demand for eco-friendly energy sources, SA biosynthesis from renewable energy sources is gaining attention for its environmental friendliness. This review comprehensively analyzes strategies for the bioconversion of lignocellulose to SA based on the lignocellulose pretreatment processes and cellulose hydrolysis and fermentation principles and highlights the research progress on acid production and SA utilization under different microbial culture conditions. In addition, the fermentation efficiency of different microbial strains for the production of SA and the main challenges were analyzed. The future application directions of SA derivatives were pointed out. It is expected that this research will provide a reference for the optimization of SA production from lignocellulose.
Collapse
Affiliation(s)
- Shuzhen Zhou
- College of Chemical Engineering, Zhengzhou University, Zhengzhou, China
| | - Miaomiao Zhang
- College of Chemical Engineering, Zhengzhou University, Zhengzhou, China
| | - Linying Zhu
- College of Management Engineering, Zhengzhou University, Zhengzhou, China
| | - Xiaoling Zhao
- College of Chemical Engineering, Zhengzhou University, Zhengzhou, China.
- State Key Laboratory of Motor Vehicle Biofuel Technology, Nanyang, China.
- Henan Center for Outstanding Overseas Scientists, Zhengzhou, China.
| | - Junying Chen
- College of Chemical Engineering, Zhengzhou University, Zhengzhou, China
- State Key Laboratory of Motor Vehicle Biofuel Technology, Nanyang, China
- Henan Center for Outstanding Overseas Scientists, Zhengzhou, China
| | - Wei Chen
- Henan Key Laboratory of Green Manufacturing of Biobased Chemicals, Puyang, China
| | - Chun Chang
- College of Chemical Engineering, Zhengzhou University, Zhengzhou, China
- State Key Laboratory of Motor Vehicle Biofuel Technology, Nanyang, China
- Henan Center for Outstanding Overseas Scientists, Zhengzhou, China
| |
Collapse
|
9
|
Liu X, Zhao G, Sun S, Fan C, Feng X, Xiong P. Biosynthetic Pathway and Metabolic Engineering of Succinic Acid. Front Bioeng Biotechnol 2022; 10:843887. [PMID: 35350186 PMCID: PMC8957974 DOI: 10.3389/fbioe.2022.843887] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2021] [Accepted: 02/16/2022] [Indexed: 11/25/2022] Open
Abstract
Succinic acid, a dicarboxylic acid produced as an intermediate of the tricarboxylic acid (TCA) cycle, is one of the most important platform chemicals for the production of various high value-added derivatives. As traditional chemical synthesis processes suffer from nonrenewable resources and environment pollution, succinic acid biosynthesis has drawn increasing attention as a viable, more environmentally friendly alternative. To date, several metabolic engineering approaches have been utilized for constructing and optimizing succinic acid cell factories. In this review, different succinic acid biosynthesis pathways are summarized, with a focus on the key enzymes and metabolic engineering approaches, which mainly include redirecting carbon flux, balancing NADH/NAD+ ratios, and optimizing CO2 supplementation. Finally, future perspectives on the microbial production of succinic acid are discussed.
Collapse
Affiliation(s)
- Xiutao Liu
- School of Life Sciences and Medicine, Shandong University of Technology, Zibo, China
| | - Guang Zhao
- State Key Lab of Microbial Technology, Shandong University, Qingdao, China
| | - Shengjie Sun
- School of Life Sciences and Medicine, Shandong University of Technology, Zibo, China
| | - Chuanle Fan
- CAS Key Laboratory of Biobased Materials, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China.,School of Chemical Engineering, University of Chinese Academy of Sciences, Beijing, China
| | - Xinjun Feng
- CAS Key Laboratory of Biobased Materials, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China
| | - Peng Xiong
- School of Life Sciences and Medicine, Shandong University of Technology, Zibo, China
| |
Collapse
|
10
|
Naresh Kumar A, Sarkar O, Chandrasekhar K, Raj T, Narisetty V, Mohan SV, Pandey A, Varjani S, Kumar S, Sharma P, Jeon BH, Jang M, Kim SH. Upgrading the value of anaerobic fermentation via renewable chemicals production: A sustainable integration for circular bioeconomy. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 806:150312. [PMID: 34844320 DOI: 10.1016/j.scitotenv.2021.150312] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2021] [Revised: 09/07/2021] [Accepted: 09/09/2021] [Indexed: 06/13/2023]
Abstract
The single bioprocess approach has certain limitations in terms of process efficiency, product synthesis, and effective resource utilization. Integrated or combined bioprocessing maximizes resource recovery and creates a novel platform to establish sustainable biorefineries. Anaerobic fermentation (AF) is a well-established process for the transformation of organic waste into biogas; conversely, biogas CO2 separation is a challenging and expensive process. Biological fixation of CO2 for succinic acid (SA) mitigates CO2 separation issues and produces commercially important renewable chemicals. Additionally, utilizing digestate rich in volatile fatty acid (VFA) to produce medium-chain fatty acids (MCFAs) creates a novel integrated platform by utilizing residual organic metabolites. The present review encapsulates the advantages and limitations of AF along with biogas CO2 fixation for SA and digestate rich in VFA utilization for MCFA in a closed-loop approach. Biomethane and biohydrogen processes CO2 utilization for SA production is cohesively deliberated along with the role of biohydrogen as an alternative reducing agent to augment SA yields. Similarly, MCFA production using VFA as a substrate and functional role of electron donors namely ethanol, lactate, and hydrogen are comprehensively discussed. A road map to establish the fermentative biorefinery approach in the framework of AF integrated sustainable bioprocess development is deliberated along with limitations and factors influencing for techno-economic analysis. The discussed integrated approach significantly contributes to promote the circular bioeconomy by establishing carbon-neutral processes in accord with sustainable development goals.
Collapse
Affiliation(s)
- A Naresh Kumar
- School of Civil and Environmental Engineering, Yonsei University, Seoul 03722, Republic of Korea; Department of Environmental Science and Technology, University of Maryland, College Park, MD 20742, USA
| | - Omprakash Sarkar
- Biochemical Process Engineering, Division of Chemical Engineering, Department of Civil, Environmental, and Natural Resources Engineering, Luleå University of Technology, 971‑87, Luleå, Sweden
| | - K Chandrasekhar
- School of Civil and Environmental Engineering, Yonsei University, Seoul 03722, Republic of Korea
| | - Tirath Raj
- School of Civil and Environmental Engineering, Yonsei University, Seoul 03722, Republic of Korea
| | - Vivek Narisetty
- School of Water, Energy, and Environment, Cranfield University, Cranfield MK43 0AL, UK
| | - S Venkata Mohan
- Bioengineering and Environmental Sciences Lab, Department of Energy and Environmental Engineering, CSIR-Indian Institute of Chemical Technology, Hyderabad 500 007, India
| | - Ashok Pandey
- Centre for Innovation and Translational Research, CSIR-Indian Institute of Toxicology Research, Lucknow, India
| | - Sunita Varjani
- Gujarat Pollution Control Board, Gandhinagar, Gujarat 382010, India
| | - Sunil Kumar
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nagpur 440 020, India
| | - Pooja Sharma
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nagpur 440 020, India
| | - Byong-Hun Jeon
- Department of Earth Resources and Environmental Engineering, Hanyang University, Seoul 04763, Republic of Korea
| | - Min Jang
- Department of Environmental Engineering, Kwangwoon University, Seoul 01897, Republic of Korea
| | - Sang-Hyoun Kim
- School of Civil and Environmental Engineering, Yonsei University, Seoul 03722, Republic of Korea.
| |
Collapse
|
11
|
Amulya K, Kopperi H, Venkata Mohan S. Tunable production of succinic acid at elevated pressures of CO 2 in a high pressure gas fermentation reactor. BIORESOURCE TECHNOLOGY 2020; 309:123327. [PMID: 32330802 DOI: 10.1016/j.biortech.2020.123327] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Revised: 04/02/2020] [Accepted: 04/03/2020] [Indexed: 06/11/2023]
Abstract
Production of bio-based alternative of succinic acid (SA) has been growing due to the awareness on environmental advantages it offers, such as CO2 sequestration. Current study focuses on evaluating the impact of different CO2 partial pressures (0.6, 0.8, 1, 2 bar) on SA production and yield as well as on other parameters like acids profile and CO2 fixation rate in Citrobacter amalonaticus. Increasing partial pressure to 2 bar enhanced SA production and maximum of 14.86 gL-1 was achieved with a productivity of 0.36 gL-1h-1 and yield of 52.10%. Varying partial pressures depicted significant influence on total acids profile, where at lower pressures (0.6 bar) lactic (5.6 gL-1) and acetic acids (4.1 gL-1) became dominant products, while concentration of SA was 2.07 gL-1, by the end of cycle. The desirable effect of moderately elevated pressures for converting CO2 to platform chemicals can be a potential strategy in overcoming current challenges related to CO2 abatement.
Collapse
Affiliation(s)
- K Amulya
- Bioengineering and Environmental Sciences (BEES) Lab, Department of Energy and Environmental Engineering, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad 500 007, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-Indian Institute of Chemical Technology (CSIR-IICT) Campus, Hyderabad 500 007, India
| | - Harishankar Kopperi
- Bioengineering and Environmental Sciences (BEES) Lab, Department of Energy and Environmental Engineering, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad 500 007, India
| | - S Venkata Mohan
- Bioengineering and Environmental Sciences (BEES) Lab, Department of Energy and Environmental Engineering, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad 500 007, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-Indian Institute of Chemical Technology (CSIR-IICT) Campus, Hyderabad 500 007, India.
| |
Collapse
|
12
|
Koendjbiharie JG, Post WB, Palmer MM, van Kranenburg R. Effects of CO 2 limitation on the metabolism of Pseudoclostridium thermosuccinogenes. BMC Microbiol 2020; 20:149. [PMID: 32513108 PMCID: PMC7282089 DOI: 10.1186/s12866-020-01835-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2020] [Accepted: 05/28/2020] [Indexed: 02/08/2023] Open
Abstract
BACKGROUND Bio-based succinic acid holds promise as a sustainable platform chemical. Its production through microbial fermentation concurs with the fixation of CO2, through the carboxylation of phosphoenolpyruvate. Here, we studied the effect of the available CO2 on the metabolism of Pseudoclostridium thermosuccinogenes, the only known succinate producing thermophile. Batch cultivations in bioreactors sparged with 1 and 20% CO2 were conducted that allowed us to carefully study the effect of CO2 limitation. RESULTS Formate yield was greatly reduced at low CO2 concentrations, signifying a switch from pyruvate formate lyase (PFL) to pyruvate:ferredoxin oxidoreductase (PFOR) for acetyl-CoA formation. The corresponding increase in endogenous CO2 production (by PFOR) enabled succinic acid production to be largely maintained as its yield was reduced by only 26%, thus also maintaining the concomitant NADH re-oxidation, essential for regenerating NAD+ for glycolysis. Acetate yield was slightly reduced as well, while that of lactate was slightly increased. CO2 limitation also prompted the formation of significant amounts of ethanol, which is only marginally produced during CO2 excess. Altogether, the changes in fermentation product yields result in increased ferredoxin and NAD+ reduction, and increased NADPH oxidation during CO2 limitation, which must be linked to reshuffled (trans) hydrogenation mechanisms of those cofactors, in order to keep them balanced. RNA sequencing, to investigate transcriptional effects of CO2 limitation, yielded only ambiguous results regarding the known (trans) hydrogenation mechanisms. CONCLUSIONS The results hinted at a decreased NAD+/NADH ratio, which could ultimately be responsible for the stress observed during CO2 limitation. Clear overexpression of an alcohol dehydrogenase (adhE) was observed, which may explain the increased ethanol production, while no changes were seen for PFL and PFOR expression that could explain the anticipated switch based on the fermentation results.
Collapse
Affiliation(s)
| | | | - Martí Munar Palmer
- Laboratory of Microbiology, Wageningen University, Wageningen, Netherlands
| | - Richard van Kranenburg
- Corbion, Gorinchem, Netherlands. .,Laboratory of Microbiology, Wageningen University, Wageningen, Netherlands.
| |
Collapse
|
13
|
Briki A, Kaboré K, Olmos E, Bosselaar S, Blanchard F, Fick M, Guedon E, Fournier F, Delaunay S. Corynebacterium glutamicum, a natural overproducer of succinic acid? Eng Life Sci 2020; 20:205-215. [PMID: 32874184 PMCID: PMC7447883 DOI: 10.1002/elsc.201900141] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2019] [Revised: 01/03/2020] [Accepted: 01/03/2020] [Indexed: 01/09/2023] Open
Abstract
Corynebacterium glutamicum is well known as an important industrial amino acid producer. For a few years, its ability to produce organic acids, under micro-aerobic or anaerobic conditions was demonstrated. This study is focused on the identification of the culture parameters influencing the organic acids production and, in particular, the succinate production, by this bacterium. Corynebacterium glutamicum 2262, used throughout this study, was a wild-type strain, which was not genetically designed for the production of succinate. The oxygenation level and the residual glucose concentration appeared as two critical parameters for the organic acids production. The maximal succinate concentration (4.9 g L-1) corresponded to the lower kLa value of 5 h-1. Above 5 h-1, a transient accumulation of the succinate was observed. Interestingly, the stop in the succinate production was concomitant with a lower threshold glucose concentration of 9 g L-1. Taking into account this threshold, a fed-batch culture was performed to optimize the succinate production with C. glutamicum 2262. The results showed that this wild-type strain was able to produce 93.6 g L-1 of succinate, which is one of the highest concentration reported in the literature.
Collapse
Affiliation(s)
- Amani Briki
- Laboratoire Réactions et Génie des ProcédésCNRSVandoeuvre CedexFrance
- Laboratoire Réactions et Génie des ProcédésUniversité de LorraineVandoeuvre CedexFrance
| | - Karim Kaboré
- Laboratoire Réactions et Génie des ProcédésCNRSVandoeuvre CedexFrance
- Laboratoire Réactions et Génie des ProcédésUniversité de LorraineVandoeuvre CedexFrance
| | - Eric Olmos
- Laboratoire Réactions et Génie des ProcédésCNRSVandoeuvre CedexFrance
- Laboratoire Réactions et Génie des ProcédésUniversité de LorraineVandoeuvre CedexFrance
| | - Sabine Bosselaar
- Laboratoire Réactions et Génie des ProcédésCNRSVandoeuvre CedexFrance
- Laboratoire Réactions et Génie des ProcédésUniversité de LorraineVandoeuvre CedexFrance
| | - Fabrice Blanchard
- Laboratoire Réactions et Génie des ProcédésCNRSVandoeuvre CedexFrance
- Laboratoire Réactions et Génie des ProcédésUniversité de LorraineVandoeuvre CedexFrance
| | - Michel Fick
- Laboratoire Réactions et Génie des ProcédésCNRSVandoeuvre CedexFrance
- Laboratoire Réactions et Génie des ProcédésUniversité de LorraineVandoeuvre CedexFrance
| | - Emmanuel Guedon
- Laboratoire Réactions et Génie des ProcédésCNRSVandoeuvre CedexFrance
- Laboratoire Réactions et Génie des ProcédésUniversité de LorraineVandoeuvre CedexFrance
| | - Frantz Fournier
- Laboratoire Réactions et Génie des ProcédésCNRSVandoeuvre CedexFrance
- Laboratoire Réactions et Génie des ProcédésUniversité de LorraineVandoeuvre CedexFrance
| | - Stéphane Delaunay
- Laboratoire Réactions et Génie des ProcédésCNRSVandoeuvre CedexFrance
- Laboratoire Réactions et Génie des ProcédésUniversité de LorraineVandoeuvre CedexFrance
| |
Collapse
|
14
|
Amulya K, Mohan SV. Fixation of CO 2, electron donor and redox microenvironment regulate succinic acid production in Citrobacter amalonaticus. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 695:133838. [PMID: 31756859 DOI: 10.1016/j.scitotenv.2019.133838] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Revised: 08/06/2019] [Accepted: 08/06/2019] [Indexed: 06/10/2023]
Abstract
Biological sequestration of CO2 for generating value added products is an emerging strategy. Succinic acid (SA) is an important C4 building block chemical, and its biological production via CO2 sequestration, holds many practical applications. This study presents an in-depth insight on SA production using isolated strain belonging to genus Citrobacter, more closely related to Citrobacter amalonaticus by considering critical process parameters such as different carbon sources at various initial concentrations, buffering agent (NaHCO3) concentrations and different pH conditions. The effect of H2 gas as an electron donor and availability of CO2 during SA production was also evaluated. The results from this work demonstrated that the isolated strain depicted the ability to utilize diverse carbon sources and highest SA production was achieved with sucrose as a substrate, indicating that reduced carbon substrates help in maximizing the redox potential. Incorporation of CO2 and H2 not only enhanced the production of SA but also affected the total acids profile favoring the production of SA over lactic, formic and acetic acids. Additional supply of CO2 and H2 led to maximum SA production of 12.07 gL-1, productivity of 0.36 gL-1 h-1 and SA yield of 48.5%. In control operation when no gases were supplied and in other test conditions where either of the gases were supplied, lactic acid was the major end product followed by acetic acid. The positive effect of CO2 for SA production provides scope for sustainable integration of SA and the CO2-generating biofuel industries or industrial side streams.
Collapse
Affiliation(s)
- K Amulya
- Bioengineering and Environmental Sciences (BEES) Lab, Department of Energy and Environmental Engineering, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad 500 007, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-Indian Institute of Chemical Technology (CSIR-IICT) Campus, Hyderabad 500 007, India
| | - S Venkata Mohan
- Bioengineering and Environmental Sciences (BEES) Lab, Department of Energy and Environmental Engineering, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad 500 007, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-Indian Institute of Chemical Technology (CSIR-IICT) Campus, Hyderabad 500 007, India.
| |
Collapse
|
15
|
Babaei M, Tsapekos P, Alvarado-Morales M, Hosseini M, Ebrahimi S, Niaei A, Angelidaki I. Valorization of organic waste with simultaneous biogas upgrading for the production of succinic acid. Biochem Eng J 2019. [DOI: 10.1016/j.bej.2019.04.012] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
|
16
|
Román R, Farràs M, Camps M, Martínez-Monge I, Comas P, Martínez-Espelt M, Lecina M, Casablancas A, Cairó J. Effect of continuous feeding of CO2 and pH in cell concentration and product titers in hIFNγ producing HEK293 cells: Induced metabolic shift for concomitant consumption of glucose and lactate. J Biotechnol 2018; 287:68-73. [DOI: 10.1016/j.jbiotec.2018.10.005] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2018] [Revised: 10/04/2018] [Accepted: 10/12/2018] [Indexed: 12/11/2022]
|
17
|
Cao W, Wang Y, Luo J, Yin J, Xing J, Wan Y. Effectively converting carbon dioxide into succinic acid under mild pressure with Actinobacillus succinogenes by an integrated fermentation and membrane separation process. BIORESOURCE TECHNOLOGY 2018; 266:26-33. [PMID: 29940439 DOI: 10.1016/j.biortech.2018.06.016] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2018] [Revised: 06/06/2018] [Accepted: 06/07/2018] [Indexed: 06/08/2023]
Abstract
The aim of the present study is to develop an effective bioprocess for converting CO2 into succinic acid (SA) with Actinobacillus succinogenes by an integrated fermentation and membrane separation process. CO2 could be effectively converted into SA using NaOH as the neutralizer under the completely closed exhaust pipe case with self-circulation of CO2 in the bioreactor. Meanwhile, the optimal CO2 partial pressure was 0.4 bar. In addition, a 300 kDa ultrafiltration (UF) membrane was preferred for constructing the membrane bioreactor. Moreover, a high conductivity was toxic to the cells during SA biosynthesis. After removing the high concentration salts by in-situ membrane filtration, the SA productivity and CO2 fixation rate increased by 39.2% compared with the batch culture, reaching 1.39 g·L-1·h-1 and 0.52 g·L-1·h-1 respectively. Furthermore, nanofiltration (NF) was suitable for purifying the SA and recovering the residual substrates in the UF permeate for the next fermentation.
Collapse
Affiliation(s)
- Weifeng Cao
- State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China
| | - Yujue Wang
- State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China; University of the Chinese Academy of Sciences, Chinese Academy of Sciences, Beijing 100049, China
| | - Jianquan Luo
- State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China; University of the Chinese Academy of Sciences, Chinese Academy of Sciences, Beijing 100049, China
| | - Junxiang Yin
- China National Center for Biotechnology Development, Beijing 100036, China
| | - Jianmin Xing
- State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China
| | - Yinhua Wan
- State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China; University of the Chinese Academy of Sciences, Chinese Academy of Sciences, Beijing 100049, China.
| |
Collapse
|
18
|
Kyselova L, Kreitmayer D, Kremling A, Bettenbrock K. Type and capacity of glucose transport influences succinate yield in two-stage cultivations. Microb Cell Fact 2018; 17:132. [PMID: 30153840 PMCID: PMC6112142 DOI: 10.1186/s12934-018-0980-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2018] [Accepted: 08/22/2018] [Indexed: 12/03/2022] Open
Abstract
Background Glucose is the main carbon source of E. coli and a typical substrate in production processes. The main glucose uptake system is the glucose specific phosphotransferase system (Glc-PTS). The PTS couples glucose uptake with its phosphorylation. This is achieved by the concomitant conversion of phosphoenolpyruvate (PEP) to pyruvate. The Glc-PTS is hence unfavorable for the production of succinate as this product is derived from PEP. Results We studied, in a systematic manner, the effect of knocking out the Glc-PTS and of replacing it with the glucose facilitator (Glf) of Zymomonas mobilis on succinate yield and productivity. For this study a set of strains derived from MG1655, carrying deletions of ackA-pta, adhE and ldhA that prevent the synthesis of competing fermentation products, were constructed and tested in two-stage cultivations. The data show that inactivation of the Glc-PTS achieved a considerable increase in succinate yield and productivity. On the other hand, aerobic growth of this strain on glucose was strongly decreased. Expression of the alternative glucose transporter, Glf, in this strain enhanced aerobic growth but productivity and yield under anaerobic conditions were slightly decreased. This decrease in succinate yield was accompanied by pyruvate production. Yield could be increased in both Glc-PTS mutants by overexpressing phosphoenolpyruvate carboxykinase (Pck). Productivity on the other hand, was decreased in the strain without alternative glucose transporter but strongly increased in the strain expressing Glf. The experiments were complemented by flux balance analysis in order to check the observed yields against the maximal theoretical yields. Furthermore, the phosphorylation state of EIIAGlc was determined. The data indicate that the ratio of PEP to pyruvate is correlating with pyruvate excretion. This ratio is affected by the PTS reaction as well as by further reactions at the PEP/pyruvate node. Conclusions The results show that for optimization of succinate yield and productivity it is not sufficient to knock out or introduce single reactions. Rather, balancing of the fluxes of central metabolism most important at the PEP/pyruvate node is important. Electronic supplementary material The online version of this article (10.1186/s12934-018-0980-1) contains supplementary material, which is available to authorized users.
Collapse
Affiliation(s)
- L Kyselova
- Team Experimental Systems Biology, Max Planck Institute for Dynamics of Complex Technical Systems, Sandtorstr.1, 39106, Magdeburg, Germany
| | - D Kreitmayer
- Systembiotechnologie, Technische Universität München, Bolzmannstr. 15, 85748, Garching, Germany
| | - A Kremling
- Systembiotechnologie, Technische Universität München, Bolzmannstr. 15, 85748, Garching, Germany
| | - K Bettenbrock
- Team Experimental Systems Biology, Max Planck Institute for Dynamics of Complex Technical Systems, Sandtorstr.1, 39106, Magdeburg, Germany.
| |
Collapse
|
19
|
Current advances of succinate biosynthesis in metabolically engineered Escherichia coli. Biotechnol Adv 2017; 35:1040-1048. [DOI: 10.1016/j.biotechadv.2017.09.007] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2017] [Revised: 09/14/2017] [Accepted: 09/15/2017] [Indexed: 01/19/2023]
|
20
|
Xiao M, Zhu X, Bi C, Ma Y, Zhang X. Improving Succinate Productivity by Engineering a Cyanobacterial CO2
Concentrating System (CCM) in Escherichia coli. Biotechnol J 2017; 12. [DOI: 10.1002/biot.201700199] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2017] [Revised: 06/16/2017] [Indexed: 01/14/2023]
Affiliation(s)
- Mengyong Xiao
- Tianjin Institute of Industrial Biotechnology; Chinese Academy of Sciences; Tianjin China
- Key Laboratory of Systems Microbial Biotechnology; Chinese Academy of Sciences; Tianjin China
- University of Chinese Academy of Sciences; Beijing China
| | - Xinna Zhu
- Tianjin Institute of Industrial Biotechnology; Chinese Academy of Sciences; Tianjin China
- Key Laboratory of Systems Microbial Biotechnology; Chinese Academy of Sciences; Tianjin China
| | - Changhao Bi
- Tianjin Institute of Industrial Biotechnology; Chinese Academy of Sciences; Tianjin China
- Key Laboratory of Systems Microbial Biotechnology; Chinese Academy of Sciences; Tianjin China
| | - Yanhe Ma
- Tianjin Institute of Industrial Biotechnology; Chinese Academy of Sciences; Tianjin China
| | - Xueli Zhang
- Tianjin Institute of Industrial Biotechnology; Chinese Academy of Sciences; Tianjin China
- Key Laboratory of Systems Microbial Biotechnology; Chinese Academy of Sciences; Tianjin China
| |
Collapse
|
21
|
13C metabolite profiling to compare the central metabolic flux in two yeast strains. BIOTECHNOL BIOPROC E 2017. [DOI: 10.1007/s12257-016-0536-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
|
22
|
Herselman J, Bradfield MF, Vijayan U, Nicol W. The effect of carbon dioxide availability on succinic acid production with biofilms of Actinobacillus succinogenes. Biochem Eng J 2017. [DOI: 10.1016/j.bej.2016.10.018] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
23
|
Lange J, Takors R, Blombach B. Zero-growth bioprocesses: A challenge for microbial production strains and bioprocess engineering. Eng Life Sci 2016; 17:27-35. [PMID: 32624726 DOI: 10.1002/elsc.201600108] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2016] [Revised: 08/18/2016] [Accepted: 09/19/2016] [Indexed: 12/20/2022] Open
Abstract
Microbial fermentation of renewable feedstocks is an established technology in industrial biotechnology. Besides strict aerobic or anaerobic modes of operation, novel innovative and industrially applicable fermentation processes were developed connecting the advantages of aerobic and anaerobic conditions in a combined production approach. As a consequence, rapid aerobic biomass formation to high cell densities and subsequent anaerobic high-yield and zero-growth production is realized. Following this strategy, bioprocesses operating with substantial overall yield and productivity can be obtained. Here, we summarize the current knowledge and achievements in such microbial zero-growth production processes and pinpoint to challenges due to the complex adaptation of the cellular metabolism during the cell's passage from aerobiosis to anaerobiosis.
Collapse
Affiliation(s)
- Julian Lange
- Institute of Biochemical Engineering University of Stuttgart Stuttgart Germany
| | - Ralf Takors
- Institute of Biochemical Engineering University of Stuttgart Stuttgart Germany
| | - Bastian Blombach
- Institute of Biochemical Engineering University of Stuttgart Stuttgart Germany
| |
Collapse
|
24
|
McCloskey D, Young JD, Xu S, Palsson BO, Feist AM. Modeling Method for Increased Precision and Scope of Directly Measurable Fluxes at a Genome-Scale. Anal Chem 2016; 88:3844-52. [DOI: 10.1021/acs.analchem.5b04914] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Douglas McCloskey
- Department
of Bioengineering, University of California, San Diego, California 92093, United States
| | | | - Sibei Xu
- Department
of Bioengineering, University of California, San Diego, California 92093, United States
| | - Bernhard O. Palsson
- Department
of Bioengineering, University of California, San Diego, California 92093, United States
- Novo
Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800 Lyngby, Denmark
| | - Adam M. Feist
- Department
of Bioengineering, University of California, San Diego, California 92093, United States
- Novo
Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800 Lyngby, Denmark
| |
Collapse
|
25
|
Yu JH, Zhu LW, Xia ST, Li HM, Tang YL, Liang XH, Chen T, Tang YJ. Combinatorial optimization of CO2transport and fixation to improve succinate production by promoter engineering. Biotechnol Bioeng 2016; 113:1531-41. [PMID: 26724788 DOI: 10.1002/bit.25927] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2015] [Revised: 12/08/2015] [Accepted: 12/29/2015] [Indexed: 02/05/2023]
Affiliation(s)
- Jun-Han Yu
- Key Laboratory of Fermentation Engineering (Ministry of Education), Hubei Key Laboratory of Industrial Microbiology, Hubei Provincial Cooperative Innovation Center of Industrial Fermentation; Hubei University of Technology; Wuhan 430068 China
- Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology; Tianjin University; Tianjin China
| | - Li-Wen Zhu
- Key Laboratory of Fermentation Engineering (Ministry of Education), Hubei Key Laboratory of Industrial Microbiology, Hubei Provincial Cooperative Innovation Center of Industrial Fermentation; Hubei University of Technology; Wuhan 430068 China
| | - Shi-Tao Xia
- Key Laboratory of Fermentation Engineering (Ministry of Education), Hubei Key Laboratory of Industrial Microbiology, Hubei Provincial Cooperative Innovation Center of Industrial Fermentation; Hubei University of Technology; Wuhan 430068 China
| | - Hong-Mei Li
- Key Laboratory of Fermentation Engineering (Ministry of Education), Hubei Key Laboratory of Industrial Microbiology, Hubei Provincial Cooperative Innovation Center of Industrial Fermentation; Hubei University of Technology; Wuhan 430068 China
| | - Ya-Ling Tang
- State Key Laboratory of Oral Diseases, West China Hospital of Stomatology; Sichuan University; Chengdu China
| | - Xin-Hua Liang
- State Key Laboratory of Oral Diseases, West China Hospital of Stomatology; Sichuan University; Chengdu China
| | - Tao Chen
- Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology; Tianjin University; Tianjin China
| | - Ya-Jie Tang
- Key Laboratory of Fermentation Engineering (Ministry of Education), Hubei Key Laboratory of Industrial Microbiology, Hubei Provincial Cooperative Innovation Center of Industrial Fermentation; Hubei University of Technology; Wuhan 430068 China
| |
Collapse
|
26
|
Zhu LW, Zhang L, Wei LN, Li HM, Yuan ZP, Chen T, Tang YL, Liang XH, Tang YJ. Collaborative regulation of CO2 transport and fixation during succinate production in Escherichia coli. Sci Rep 2015; 5:17321. [PMID: 26626308 PMCID: PMC4667291 DOI: 10.1038/srep17321] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2015] [Accepted: 10/19/2015] [Indexed: 02/05/2023] Open
Abstract
In Escherichia coli, succinic acid is synthesized by CO2 fixation-based carboxylation of C3 metabolites. A two-step process is involved in CO2 integration: CO2 uptake into the cell and CO2 fixation by carboxylation enzymes. The phosphoenolpyruvate (PEP) carboxylase (PPC) and carboxykinase (PCK) are two important carboxylation enzymes within the succinate synthetic pathway, while SbtA and BicA are two important bicarbonate transporters. In this study, we employed a dual expression system, in which genes regulating both CO2 uptake and fixation were co-overexpressed, or overexpressed individually to improve succinate biosynthesis. Active CO2 uptake was observed by the expression of SbtA or/and BicA, but the succinate biosynthesis was decreased. The succinate production was significantly increased only when a CO2 fixation gene (ppc or pck) and a CO2 transport gene (sbtA or bicA) were co-expressed. Co-expression of pck and sbtA provided the best succinate production among all the strains. The highest succinate production of 73.4 g L−1 was 13.3%, 66.4% or 15.0% higher than that obtained with the expression of PCK, SbtA alone, or with empty plasmids, respectively. We believe that combined regulation of CO2 transport and fixation is critical for succinate production. Imbalanced gene expression may disturb the cellular metabolism and succinate production.
Collapse
Affiliation(s)
- Li-Wen Zhu
- Key Laboratory of Fermentation Engineering (Ministry of Education) and Hubei Key Laboratory of Industrial Microbiology, Hubei University of Technology, Wuhan 430068 China
| | - Lei Zhang
- Key Laboratory of Fermentation Engineering (Ministry of Education) and Hubei Key Laboratory of Industrial Microbiology, Hubei University of Technology, Wuhan 430068 China
| | - Li-Na Wei
- Key Laboratory of Fermentation Engineering (Ministry of Education) and Hubei Key Laboratory of Industrial Microbiology, Hubei University of Technology, Wuhan 430068 China
| | - Hong-Mei Li
- Key Laboratory of Fermentation Engineering (Ministry of Education) and Hubei Key Laboratory of Industrial Microbiology, Hubei University of Technology, Wuhan 430068 China
| | - Zhan-Peng Yuan
- Key Laboratory of Fermentation Engineering (Ministry of Education) and Hubei Key Laboratory of Industrial Microbiology, Hubei University of Technology, Wuhan 430068 China
| | - Tao Chen
- Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072 China
| | - Ya-Ling Tang
- State Key Laboratory of Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu 610041 China
| | - Xin-Hua Liang
- State Key Laboratory of Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu 610041 China
| | - Ya-Jie Tang
- Key Laboratory of Fermentation Engineering (Ministry of Education) and Hubei Key Laboratory of Industrial Microbiology, Hubei University of Technology, Wuhan 430068 China
| |
Collapse
|
27
|
Bradfield MFA, Nicol W. Continuous succinic acid production from xylose by Actinobacillus succinogenes. Bioprocess Biosyst Eng 2015; 39:233-44. [PMID: 26610345 DOI: 10.1007/s00449-015-1507-3] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2015] [Accepted: 11/14/2015] [Indexed: 11/28/2022]
Abstract
Continuous, anaerobic fermentations of D-xylose were performed by Actinobacillus succinogenes 130Z in a custom, biofilm reactor at dilution rates of 0.05, 0.10 and 0.30 h(-1). Succinic acid yields on xylose (0.55-0.68 g g(-1)), titres (10.9-29.4 g L(-1)) and productivities (1.5-3.4 g L(-1) h(-1)) were lower than those of a previous study on glucose, but product ratios (succinic acid/acetic acid = 3.0-5.0 g g(-1)) and carbohydrate consumption rates were similar. Also, mass balance closures on xylose were up to 18.2 % lower than those on glucose. A modified HPLC method revealed pyruvic acid excretion at appreciable concentrations (1.2-1.9 g L(-1)) which improved the mass balance closure by up to 16.8 %. Furthermore, redox balances based on the accounted xylose consumed and the excreted metabolites, indicated an overproduction of reducing power. The oxidative pentose phosphate pathway was shown to be a plausible source of the additional reducing power.
Collapse
Affiliation(s)
- Michael F A Bradfield
- Department of Chemical Engineering, University of Pretoria, Lynnwood Road, Hatfield, Pretoria, 0002, South Africa.
| | - Willie Nicol
- Department of Chemical Engineering, University of Pretoria, Lynnwood Road, Hatfield, Pretoria, 0002, South Africa.
| |
Collapse
|
28
|
Blombach B, Takors R. CO2 - Intrinsic Product, Essential Substrate, and Regulatory Trigger of Microbial and Mammalian Production Processes. Front Bioeng Biotechnol 2015; 3:108. [PMID: 26284242 PMCID: PMC4522908 DOI: 10.3389/fbioe.2015.00108] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2015] [Accepted: 07/13/2015] [Indexed: 11/22/2022] Open
Abstract
Carbon dioxide formation mirrors the final carbon oxidation steps of aerobic metabolism in microbial and mammalian cells. As a consequence, CO2/HCO3− dissociation equilibria arise in fermenters by the growing culture. Anaplerotic reactions make use of the abundant CO2/HCO3− levels for refueling citric acid cycle demands and for enabling oxaloacetate-derived products. At the same time, CO2 is released manifold in metabolic reactions via decarboxylation activity. The levels of extracellular CO2/HCO3− depend on cellular activities and physical constraints such as hydrostatic pressures, aeration, and the efficiency of mixing in large-scale bioreactors. Besides, local CO2/HCO3− levels might also act as metabolic inhibitors or transcriptional effectors triggering regulatory events inside the cells. This review gives an overview about fundamental physicochemical properties of CO2/HCO3− in microbial and mammalian cultures effecting cellular physiology, production processes, metabolic activity, and transcriptional regulation.
Collapse
Affiliation(s)
- Bastian Blombach
- Institute of Biochemical Engineering, University of Stuttgart , Stuttgart , Germany
| | - Ralf Takors
- Institute of Biochemical Engineering, University of Stuttgart , Stuttgart , Germany
| |
Collapse
|
29
|
Tan JP, Md. Jahim J, Wu TY, Harun S, Kim BH, Mohammad AW. Insight into Biomass as a Renewable Carbon Source for the Production of Succinic Acid and the Factors Affecting the Metabolic Flux toward Higher Succinate Yield. Ind Eng Chem Res 2014. [DOI: 10.1021/ie502178j] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
| | | | - Ta Yeong Wu
- Chemical
Engineering Discipline, School of Engineering, Monash University, Jalan
Lagoon Selatan, Bandar Sunway, 46150, Selangor Darul Ehsan, Malaysia
| | | | | | | |
Collapse
|
30
|
Cofactor and CO2 donor regulation involved in reductive routes for polymalic acid production by Aureobasidium pullulans CCTCC M2012223. Bioprocess Biosyst Eng 2014; 37:2131-6. [DOI: 10.1007/s00449-014-1182-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2013] [Accepted: 03/20/2014] [Indexed: 11/25/2022]
|
31
|
Chen X, Zhou L, Tian K, Kumar A, Singh S, Prior BA, Wang Z. Metabolic engineering of Escherichia coli: A sustainable industrial platform for bio-based chemical production. Biotechnol Adv 2013; 31:1200-23. [DOI: 10.1016/j.biotechadv.2013.02.009] [Citation(s) in RCA: 117] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2012] [Revised: 02/04/2013] [Accepted: 02/25/2013] [Indexed: 12/20/2022]
|
32
|
Toya Y, Shimizu H. Flux analysis and metabolomics for systematic metabolic engineering of microorganisms. Biotechnol Adv 2013; 31:818-26. [PMID: 23680193 DOI: 10.1016/j.biotechadv.2013.05.002] [Citation(s) in RCA: 81] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2013] [Revised: 04/23/2013] [Accepted: 05/04/2013] [Indexed: 12/29/2022]
Abstract
Rational engineering of metabolism is important for bio-production using microorganisms. Metabolic design based on in silico simulations and experimental validation of the metabolic state in the engineered strain helps in accomplishing systematic metabolic engineering. Flux balance analysis (FBA) is a method for the prediction of metabolic phenotype, and many applications have been developed using FBA to design metabolic networks. Elementary mode analysis (EMA) and ensemble modeling techniques are also useful tools for in silico strain design. The metabolome and flux distribution of the metabolic pathways enable us to evaluate the metabolic state and provide useful clues to improve target productivity. Here, we reviewed several computational applications for metabolic engineering by using genome-scale metabolic models of microorganisms. We also discussed the recent progress made in the field of metabolomics and (13)C-metabolic flux analysis techniques, and reviewed these applications pertaining to bio-production development. Because these in silico or experimental approaches have their respective advantages and disadvantages, the combined usage of these methods is complementary and effective for metabolic engineering.
Collapse
Affiliation(s)
- Yoshihiro Toya
- Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, 1-5 Yamadaoka, Suita, Osaka 565-0871, Japan
| | | |
Collapse
|
33
|
Xi YL, Chen KQ, Dai WY, Ma JF, Zhang M, Jiang M, Wei P, Ouyang PK. Succinic acid production by Actinobacillus succinogenes NJ113 using corn steep liquor powder as nitrogen source. BIORESOURCE TECHNOLOGY 2013; 136:775-9. [PMID: 23558185 DOI: 10.1016/j.biortech.2013.03.107] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2013] [Revised: 03/15/2013] [Accepted: 03/16/2013] [Indexed: 05/03/2023]
Abstract
In this study, corn steep liquor powder (CSL) was used as nitrogen source to replace the relatively costly yeast extract typically used for the production of succinic acid with Actinobacillus succinogenes NJ113. Moreover, when heme was added to the fermentation medium and the culture was agitated at a low speed, a maximum succinic acid concentration of 37.9 g/l was obtained from a glucose concentration of 50 g/l, and a productivity of 0.75 g/l/h was achieved. These yields are almost as high as for fermentation with glucose and yeast extract. These results suggest that heme-supplemented CSL may be a suitable alternative nitrogen source for a cost-effective method of producing succinic acid with A. succinogenes NJ113 while consuming less energy than previous methods.
Collapse
Affiliation(s)
- Yong-lan Xi
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing University of Technology, Puzhu South Road 30#, Nanjing 211816, China
| | | | | | | | | | | | | | | |
Collapse
|
34
|
Schuetz R, Zamboni N, Zampieri M, Heinemann M, Sauer U. Multidimensional optimality of microbial metabolism. Science 2012; 336:601-4. [PMID: 22556256 DOI: 10.1126/science.1216882] [Citation(s) in RCA: 273] [Impact Index Per Article: 22.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Although the network topology of metabolism is well known, understanding the principles that govern the distribution of fluxes through metabolism lags behind. Experimentally, these fluxes can be measured by (13)C-flux analysis, and there has been a long-standing interest in understanding this functional network operation from an evolutionary perspective. On the basis of (13)C-determined fluxes from nine bacteria and multi-objective optimization theory, we show that metabolism operates close to the Pareto-optimal surface of a three-dimensional space defined by competing objectives. Consistent with flux data from evolved Escherichia coli, we propose that flux states evolve under the trade-off between two principles: optimality under one given condition and minimal adjustment between conditions. These principles form the forces by which evolution shapes metabolic fluxes in microorganisms' environmental context.
Collapse
Affiliation(s)
- Robert Schuetz
- Institute of Molecular Systems Biology, Eidgenössische Technische Hochschule Zurich, Zurich, Switzerland
| | | | | | | | | |
Collapse
|
35
|
Production of succinic acid and lactic acid by Corynebacterium crenatum under anaerobic conditions. ANN MICROBIOL 2012. [DOI: 10.1007/s13213-012-0441-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
|
36
|
Wu H, Li Q, Li ZM, Ye Q. Succinic acid production and CO2 fixation using a metabolically engineered Escherichia coli in a bioreactor equipped with a self-inducing agitator. BIORESOURCE TECHNOLOGY 2012; 107:376-384. [PMID: 22209435 DOI: 10.1016/j.biortech.2011.12.043] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2011] [Revised: 12/08/2011] [Accepted: 12/08/2011] [Indexed: 05/31/2023]
Abstract
A 5-L bioreactor equipped with a self-induction agitator was applied to a two-stage culture of Escherichia coli NZN111 for succinic acid production in a mineral salts medium. CO(2) was cycled inside this reactor and a sufficient CO(2) transfer rate was maintained with the elimination of CO(2) wasted by ventilation. In the anaerobic stage, much less supplemental CO(2) was required at pH6.3 compared to that at pH7.0, and the succinate yield increased. The performances of succinate production were little changed when compared to a process with CO(2) sparging indicating that use of the self-inducing agitator reduced CO(2) waste. The succinate production process was further coupled with ethanol fermentation by using the CO(2) produced from ethanol fermentation. This integrated system demonstrated that both succinate and bioethanol can be effectively produced while the emission of the CO(2) formed during ethanol fermentation can be greatly reduced.
Collapse
Affiliation(s)
- Hui Wu
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China
| | | | | | | |
Collapse
|
37
|
Zou W, Zhu LW, Li HM, Tang YJ. Significance of CO2 donor on the production of succinic acid by Actinobacillus succinogenes ATCC 55618. Microb Cell Fact 2011; 10:87. [PMID: 22040346 PMCID: PMC3261827 DOI: 10.1186/1475-2859-10-87] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2011] [Accepted: 10/31/2011] [Indexed: 02/06/2023] Open
Abstract
Background Succinic acid is a building-block chemical which could be used as the precursor of many industrial products. The dissolved CO2 concentration in the fermentation broth could strongly regulate the metabolic flux of carbon and the activity of phosphoenolpyruvate (PEP) carboxykinase, which are the important committed steps for the biosynthesis of succinic acid by Actinobacillus succinogenes. Previous reports showed that succinic acid production could be promoted by regulating the supply of CO2 donor in the fermentation broth. Therefore, the effects of dissolved CO2 concentration and MgCO3 on the fermentation process should be investigated. In this article, we studied the impacts of gaseous CO2 partial pressure, dissolved CO2 concentration, and the addition amount of MgCO3 on succinic acid production by Actinobacillus succinogenes ATCC 55618. We also demonstrated that gaseous CO2 could be removed when MgCO3 was fully supplied. Results An effective CO2 quantitative mathematical model was developed to calculate the dissolved CO2 concentration in the fermentation broth. The highest succinic acid production of 61.92 g/L was obtained at 159.22 mM dissolved CO2 concentration, which was supplied by 40 g/L MgCO3 at the CO2 partial pressure of 101.33 kPa. When MgCO3 was used as the only CO2 donor, a maximal succinic acid production of 56.1 g/L was obtained, which was just decreased by 7.03% compared with that obtained under the supply of gaseous CO2 and MgCO3. Conclusions Besides the high dissolved CO2 concentration, the excessive addition of MgCO3 was beneficial to promote the succinic acid synthesis. This was the first report investigating the replaceable of gaseous CO2 in the fermentation of succinic acid. The results obtained in this study may be useful for reducing the cost of succinic acid fermentation process.
Collapse
Affiliation(s)
- Wei Zou
- Key Laboratory of Fermentation Engineering (Ministry of Education), Hubei University of Technology, Wuhan 430068, China
| | | | | | | |
Collapse
|
38
|
Thakker C, Martínez I, San KY, Bennett GN. Succinate production in Escherichia coli. Biotechnol J 2011; 7:213-24. [PMID: 21932253 DOI: 10.1002/biot.201100061] [Citation(s) in RCA: 123] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2011] [Revised: 07/15/2011] [Accepted: 08/05/2011] [Indexed: 11/06/2022]
Abstract
Succinate has been recognized as an important platform chemical that can be produced from biomass. While a number of organisms are capable of succinate production naturally, this review focuses on the engineering of Escherichia coli for the production of four-carbon dicarboxylic acid. Important features of a succinate production system are to achieve an optimal balance of reducing equivalents generated by consumption of the feedstock, while maximizing the amount of carbon channeled into the product. Aerobic and anaerobic production strains have been developed and applied to production from glucose and other abundant carbon sources. Metabolic engineering methods and strain evolution have been used and supplemented by the recent application of systems biology and in silico modeling tools to construct optimal production strains. The metabolic capacity of the production strain, the requirement for efficient recovery of succinate, and the reliability of the performance under scaleup are important in the overall process. The costs of the overall biorefinery-compatible process will determine the economic commercialization of succinate and its impact in larger chemical markets.
Collapse
Affiliation(s)
- Chandresh Thakker
- Department of Biochemistry and Cell Biology, Rice University, Houston, TX, USA
| | | | | | | |
Collapse
|
39
|
Martínez I, Lee A, Bennett GN, San KY. Culture conditions' impact on succinate production by a high succinate producing Escherichia coli strain. Biotechnol Prog 2011; 27:1225-31. [DOI: 10.1002/btpr.641] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2011] [Revised: 04/12/2011] [Indexed: 11/06/2022]
|
40
|
Xi YL, Chen KQ, Li J, Fang XJ, Zheng XY, Sui SS, Jiang M, Wei P. Optimization of culture conditions in CO2 fixation for succinic acid production using Actinobacillus succinogenes. J Ind Microbiol Biotechnol 2011; 38:1605-12. [DOI: 10.1007/s10295-011-0952-5] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2010] [Accepted: 02/18/2011] [Indexed: 11/28/2022]
|
41
|
Metabolically engineered Escherichia coli for biotechnological production of four-carbon 1,4-dicarboxylic acids. J Ind Microbiol Biotechnol 2010; 38:649-56. [DOI: 10.1007/s10295-010-0913-4] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2010] [Accepted: 11/11/2010] [Indexed: 10/18/2022]
|
42
|
Ma JF, Jiang M, Chen KQ, Xu B, Liu SW, Wei P, Ying HJ, Chang HN, Ouyang PK. Strategies for efficient repetitive production of succinate using metabolically engineered Escherichia coli. Bioprocess Biosyst Eng 2010; 34:411-8. [PMID: 21103890 DOI: 10.1007/s00449-010-0484-9] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2010] [Accepted: 11/03/2010] [Indexed: 11/25/2022]
Abstract
Escherichia coli AFP111, a pflB, ldhA, ptsG triple mutant of E. coli W1485, can be recovered for additional succinate production in fresh medium after two-stage fermentation (an aerobic growth stage followed by an anaerobic production stage). However, the specific productivity is lower than that of two-stage fermentation. In this study, three strategies were compared for reusing the cells. It was found when cells were aerobically cultivated at the end of two-stage fermentation without supplementing any carbon source, metabolites (mainly succinate and acetate) could be consumed. As a result, enzyme activities involved in the reductive arm of tricarboxylic acid cycle and the glyoxylate shunt were enhanced, yielding a succinate specific productivity above g⁻¹(DCW)h⁻¹ and a mass yield above 0.90 g g⁻¹ in the subsequent anaerobic fermentation. In addition, the intracellular NADH of cells subjected to aerobic cultivation with metabolites increased by more than 3.6 times and the ratio of NADH to NAD+ increased from 0.4 to 1.3, which were both favorable for driving the TCA branch to succinate.
Collapse
Affiliation(s)
- Jiang-feng Ma
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing University of Technology, No. 5 Xinmofan Road, Nanjing, China
| | | | | | | | | | | | | | | | | |
Collapse
|
43
|
Ma JF, Jiang M, Chen KQ, Xu B, Liu SW, Wei P, Ying HJ. Succinic acid production with metabolically engineered E. coli recovered from two-stage fermentation. Biotechnol Lett 2010; 32:1413-8. [DOI: 10.1007/s10529-010-0313-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2010] [Accepted: 05/12/2010] [Indexed: 11/30/2022]
|
44
|
Hädicke O, Klamt S. CASOP: a computational approach for strain optimization aiming at high productivity. J Biotechnol 2010; 147:88-101. [PMID: 20303369 DOI: 10.1016/j.jbiotec.2010.03.006] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2009] [Revised: 02/26/2010] [Accepted: 03/04/2010] [Indexed: 10/19/2022]
Abstract
The identification of suitable intervention strategies increasing the productivity of microorganisms is a central issue in metabolic engineering. Here, we introduce a computational framework for strain optimization based on reaction importance measures derived from weighted elementary modes. The objective is to shift the natural flux distribution to synthesis of the desired product with high production rates thereby retaining the ability of the host organism to produce biomass precursors. The stoichiometric approach allows consideration of regulatory/operational constraints and takes product yield and network capacity--the two major determinants of (specific) productivity--explicitly into account. The relative contribution of each reaction to yield and network capacity and thus productivity is estimated by analyzing the spectrum of available conversion routes (elementary modes). A result of our procedure is a reaction ranking suggesting knockout and overexpression candidates. Moreover, we show that the methodology allows for the evaluation of cofactor and co-metabolite requirements in conjunction with product synthesis. We illustrate the proposed method by studying the overproduction of succinate and lactate by Escherichia coli. The metabolic engineering strategies identified in silico resemble existing mutant strains designed for the synthesis of the respective products. Additionally, some non-intuitive intervention strategies are revealed.
Collapse
Affiliation(s)
- Oliver Hädicke
- Max Planck Institute for Dynamics of Complex Technical Systems, Sandtorstrasse 1, D-39106 Magdeburg, Germany
| | | |
Collapse
|
45
|
Effect of growth phase feeding strategies on succinate production by metabolically engineered Escherichia coli. Appl Environ Microbiol 2009; 76:1298-300. [PMID: 20038712 DOI: 10.1128/aem.02190-09] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Aerobic growth conditions significantly influenced anaerobic succinate production in two-stage fermentation by Escherichia coli AFP111 with knockouts in rpoS, pflAB, ldhA, and ptsG genes. At a low cell growth rate limited by glucose, enzymes involved in the reductive arm of the tricarboxylic acid cycle and the glyoxylate shunt showed elevated activities, providing AFP111 with intracellular redox balance and increased succinic acid yield and productivity.
Collapse
|
46
|
Lu S, Eiteman MA, Altman E. Effect of flue gas components on succinate production and CO2 fixation by metabolically engineered Escherichia coli. World J Microbiol Biotechnol 2009. [DOI: 10.1007/s11274-009-0185-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|