Mechanistic insight into cobalt-catalyzed stereodivergent semihydrogenation of alkynes: The story of selectivity control

Recent advances in the selective semi-hydrogenation of alkyne to (E)-olefins

Considering the potential importance and upsurge in demand, the selective semi-hydrogenation of alkynes to (E)-olefins has attracted significant interest. This article highlights the recent advances in newer technologies and important methodologies directed to (E)-olefins from alkynes developed from 2015 to 2023. Notable features summarised include the catalyst or ligand design and control of product selectivity based on precious and nonprecious metal catalysts for semi-hydrogenation to (E)-olefins. Mechanistic studies for various catalytic transformations, including synthetic application to bioactive compounds, are summarised.

Mechanism and Stereoselectivity Control of Terminal Alkyne Dimerization Activated by a Zr/Co Heterobimetallic Complex: A DFT Study

Heterobimetallic complexes have recently garnered considerable attention in organic synthesis owing to their high activity and selectivity, which surpass those of monometallic complexes. In this study, the detailed mechanisms of terminal alkyne dimerization activated by the heterobimetallic Zr/Co complex, as well as the different stereoselectivities of Me3SiC≡CH and PhC≡CH dimerization, were investigated and elucidated by using density functional theory calculations. After excluding the three-molecule reaction and outer-sphere mechanisms, the inner-sphere mechanism was determined as the most optimal process. The inner-sphere mechanism involves four processes: THF dissociation and coordination of the first alkyne; ligand migration and C-H activation; N2 dissociation and insertion of the second alkyne; and reductive elimination. The stereoselectivity between the E-/Z- and gem-isomers is determined by the C-C coupling mode of the two alkynes and that of the E- and Z-isomers is determined by the sequence of the C-C coupling and hydrogen migration in the reductive elimination process. Me3SiC≡CH dimerization yields only an E-isomer owing to the large differences in the distortion and interaction energies, whereas PhC≡CH dimerization produces an E-, Z-, and gem-isomers owing to the reduced interaction energy differences.

Valve turning towards on-cycle in cobalt-catalyzed Negishi-type cross-coupling

Ligands and additives are often utilized to stabilize low-valent catalytic metal species experimentally, while their role in suppressing metal deposition has been less studied. Herein, an on-cycle mechanism is reported for CoCl2bpy2 catalyzed Negishi-type cross-coupling. A full catalytic cycle of this kind of reaction was elucidated by multiple spectroscopic studies. The solvent and ligand were found to be essential for the generation of catalytic active Co(I) species, among which acetonitrile and bipyridine ligand are resistant to the disproportionation events of Co(I). Investigations, based on Quick-X-Ray Absorption Fine Structure (Q-XAFS) spectroscopy, Electron Paramagnetic Resonance (EPR), IR allied with DFT calculations, allow comprehensive mechanistic insights that establish the structural information of the catalytic active cobalt species along with the whole catalytic Co(I)/Co(III) cycle. Moreover, the acetonitrile and bipyridine system can be further extended to the acylation, allylation, and benzylation of aryl zinc reagents, which present a broad substrate scope with a catalytic amount of Co salt. Overall, this work provides a basic mechanistic perspective for designing cobalt-catalyzed cross-coupling reactions.

Theoretical Study on the Mechanism of Cobalt-Catalyzed C-O Silylation and Stannylation

Organosilicon and organotin compounds have been widely used in many fields, such as organic synthesis, materials science, and biochemistry, because of their unique physical and electronic properties. Recently, two novel compounds containing C-Si or C-Sn bonds have been synthesized. These compounds can be used for late modification of drug-like molecules such as probenecid, duloxetine, and fluoxetine derivatives. However, the detailed reaction mechanisms and the influencing factors that determine selectivity are still unclear. Moreover, several questions remain that are valuable to investigate further, such as (1) the influence of the solvent and the lithium salt on the reaction of the Si/Sn-Zn reagent, (2) the stereoselective functionalization of C-O bonds, and (3) the differences between silylation and stannylation. In the current study, we have explored the above issues with density functional theory and have found that stereoselectivity was most likely caused by the oxidative addition of cobalt to the C-O bond of alkenyl acetate with chelation assistance and that transmetalation was most likely the rate-determining step. For Sn-Zn reagents, the transmetalation was achieved by anion and cation pairs, whereas for Si-Zn reagents, the process was facilitated by Co-Zn complexes.

H2O as the Hydrogen Donor: Stereo-Selective Synthesis of E- and Z-Alkenes by Palladium-Catalyzed Semihydrogenation of Alkynes

It is very desirable to develop a facile controllable method for selective semihydrogenation of alkynes to alkenes with a cheap and safe hydrogen donor but remains a big challenge. H₂O is one of the best choices of the transfer hydrogenation agent of the world, and the development of methods for synthesizing E- and Z-alkenes using H₂O as the hydrogen source is worthwhile. In this article, a palladium-catalyzed synthesis of E- and Z-alkenes from alkynes using H₂O as the hydrogenation agent was reported. The use of di-tert-butylphosphinous chloride (t-Bu₂PCl) and triethanolamine/sodium acetate (TEOA/NaOAc) was essential for the stereo-selective semihydrogenation of alkynes. The general applicability of this procedure was highlighted by the synthesis of more than 48 alkenes, with good yields and high stereoselectivities.

Structural snapshots of an Al-Cu bond-mediated transformation of terminal acetylenes

The copper(i) alumanyl derivative, [{SiN^Dipp}Al-Cu(NHC^iPr)] (SiN^Dipp = {CH₂SiMe₂NDipp}₂; Dipp = 2,6-di-isopropylphenyl; NHC^iPr = N,N'-di-isopropyl-4,5-dimethyl-2-ylidene), reacts in a stepwise fashion with up to three equivalents of various terminal alkynes. This reactivity results in the sequential formation of cuprous (hydrido)(alkynyl)aluminate, (alkenyl)(alkynyl)aluminate and bis(alkynyl)aluminate derivatives, examples of which have been fully characterised. The process of alkene liberation resulting from the latter reaction step constitutes a unique case of alkyne transfer semi-hydrogenation in which the C-H acidic alkyne itself acts as a source of proton, with the Cu-Al bond providing the requisite electrons to effect reduction. This reaction sequence is validated by DFT calculations, which rationalise the variable stability of the initially formed heterobimetallic hydrides.

Stereoselective Semi-Hydrogenations of Alkynes by First-Row (3d) Transition Metal Catalysts

The chemo- and stereoselective semi-hydrogenation of alkynes to alkenes is a fundamental transformation in synthetic chemistry, for which the use of precious 4d or 5d metal catalysts is well-established. In mankind's unwavering quest for sustainability, research focus has considerably veered towards the 3d metals. Given their high abundancy and availability as well as lower toxicity and noxiousness, they are undoubtedly attractive from both an economic and an environmental perspective. Herein, we wish to present noteworthy and groundbreaking examples for the use of 3d metal catalysts for diastereoselective alkyne semi-hydrogenation as we embark on a journey through the first-row transition metals.

Cobalt-Catalyzed Hydrogenation Reactions Enabled by Ligand-Based Storage of Dihydrogen

The use of supporting ligands that can store either protons or electrons has emerged as a powerful strategy in catalysis. While these strategies are potent individually, natural systems mediate remarkable transformations by combining the storage of both protons and electrons in the secondary coordination sphere. As such, there has been recent interest in using this strategy to enable fundamentally different transformations. Furthermore, outsourcing H-atom or hydrogen storage to ancillary ligands can also enable alternative mechanistic pathways and thereby selectivity. Here, we describe the application of this strategy to facilitate radical reactivity in Co-based hydrogenation catalysis. Metalation of previously reported dihydrazonopyrrole ligands with Co results in paramagnetic complexes, which are best described as having Co(II) oxidation states. These complexes catalytically hydrogenate olefins with low catalyst loadings under mild conditions (1 atm H₂, 23 °C). Mechanistic, spectroscopic, and computational investigations indicate that this system goes through a radical hydrogen-atom transfer (HAT) type pathway that is distinct from classic organometallic mechanisms and is supported by the ability of the ligand to store H₂. These results show how ancillary ligands can facilitate efficient catalysis, and furthermore how classic organometallic mechanisms for catalysis can be altered by the secondary coordination sphere.

E-Selective Manganese-Catalyzed Semihydrogenation of Alkynes with H2 Directly Employed or In Situ-Generated

Selective semihydrogenation of alkynes with the Mn(I) alkyl catalyst fac-[Mn(dippe)(CO)₃(CH₂CH₂CH₃)] (dippe = 1,2-bis(di-iso-propylphosphino)ethane) as a precatalyst is described. The required hydrogen gas is either directly employed or in situ-generated upon alcoholysis of KBH₄ with methanol. A series of aryl-aryl, aryl-alkyl, alkyl-alkyl, and terminal alkynes was readily hydrogenated to yield E-alkenes in good to excellent isolated yields. The reaction proceeds at 60 °C for directly employed hydrogen or at 60-90 °C with in situ-generated hydrogen and catalyst loadings of 0.5-2 mol %. The implemented protocol tolerates a variety of electron-donating and electron-withdrawing functional groups, including halides, phenols, nitriles, unprotected amines, and heterocycles. The reaction can be upscaled to the gram scale. Mechanistic investigations, including deuterium-labeling studies and density functional theory (DFT) calculations, were undertaken to provide a reasonable reaction mechanism, showing that initially formed Z-isomer undergoes fast isomerization to afford the thermodynamically more stable E-isomer.

Catalytic and mechanistic studies of a highly active and E-selective Co(II) PNNH pincer catalyst system for transfer-semihydrogenation of internal alkynes

Herein we report the application of a Co(II) PNNH pincer catalyst system (PNNH = 2-(5-(t-butyl)-1H-pyrazol-3-yl)-6-(dialkylphosphinomethyl)pyridine) for the highly E-selective transfer semihydrogenation of internal diaryl alkynes using methanol and ammonia borane...

Mechanistic study of cobalt(I)-catalyzed asymmetric coupling of ethylene and enynes to functionalized cyclobutanes

Density functional theory (DFT) calculations have been performed to gain insight into the reaction mechanism of the Co(I)-catalyzed asymmetric [2 + 2] cycloaddition reaction of enyne 1a with ethylene 2 to give the functionalized cyclobutene E-4a possessing a chiral, all-carbon quaternary center in the ring framework (Science, 361, 68-72). This study reveals that the whole catalysis can be characterized via three stages: (i) oxidative dimerization followed by reductive elimination gives the intermediate IM3, (ii) the alkenyl-Co(III) metallacycloheptene IM6 formation with the addition of another equivalent ethylene via an oxidative dimerization process, (iii) β-Hydrogen elimination and reductive elimination from IM6 to result in the final product E-4a and regenerate the active speices IM1 for the next catalytic cycle. Each stage is kinetically and thermodynamically feasible for experimental realization under mild conditions, and the formation of the alkenyl-Co(III) metallacycloheptene IM6, with a barrier of 27.2 kcal mol^-1 (i.e., IM2 → TS4), should be the rate-determining step (RDS) during the whole catalysis. In addition, the origins of enantioselectivity and regioselectivity of the product are discussed.

Dynamic Modification of Palladium Catalysts with Chain Alkylamines for the Selective Hydrogenation of Alkynes

Selective hydrogenation of alkynes plays a pivotal role in the field of chemical production but still suffers from restrained catalytic activity and low alkene selectivity. Herein, a dynamic modification strategy was utilized by preferentially attaching diethylenetriamine (DETA) to the surface of the support to modify the Pd catalyst. The DETA-modified Pd catalyst demonstrates unprecedented reactivity (14,412 h^-1) and selectivity as high as 94% for the semihydrogenation of 2-methyl-3-butyn-2-ol at 35 °C, presenting a 36-fold higher reactivity than the Lindlar catalyst. Moreover, the yield exceeds 98.2% at full conversion under no solvent and organic adsorbate conditions, indicating the potential applications for industrial production. Systematic studies reveal that flexible DETA serves in a reversible "breathing pattern" for the molecular discrimination by constructing dynamic metal-support interaction (DMSI), enabling selective exclusion of alkenes from the Pd surface. DETA is competent to dynamically adjust the adsorption behaviors of reactants and effectively boost the intrinsic activity of the modified catalyst. Impressively, the DETA-modified Pd catalyst exhibits exceptional stability even after being recycled 20 times. This work sheds light on a novel and applicable method for the rational design of heterogeneous catalysts via DMSI.

Asymmetric hydrogenation catalyzed by first-row transition metal complexes

This review focuses on asymmetric direct and transfer hydrogenation with first-row transition metal complexes. The reaction mechanisms and the models of enantiomeric induction were summarized and emphasized.

Mechanistic insights into the rhodium–copper cascade catalyzed dual C–H annulation of indoles

Density functional theory (DFT) calculations have been performed to provide mechanistic insight into the Rh/Cu co-catalyzed multicomponent annulation of indoles, diazo compounds, and α,β-unsaturated esters.

Catalytic, Transition-Metal-Free Semireduction of Propiolamide Derivatives: Scope and Mechanistic Investigation

We report a transition-metal-free trans-selective semireduction of alkynes with pinacolborane and catalytic potassium tert-butoxide. A variety of 3-substituted primary and secondary propiolamides, including an analog of FK866, a potent nicotinamide mononucleotide adenyltransferase (NMNAT) inhibitor, are reduced to the corresponding (E)-3-substituted acrylamide derivatives in up to 99% yield with >99:1 E/Z selectivity. Mechanistic studies suggest that an activated Lewis acid-base complex transfers a hydride to the α-carbon followed by rapid protonation in a trans fashion.

Homogeneous catalytic transfer semihydrogenation of alkynes – an overview of hydrogen sources, catalysts and reaction mechanisms

Chemoselective semihydrogenation of alkynes to alkenes with E- or Z-stereoselectivity is among the most important transformations in the synthesis of highly functional organic building blocks.

A metal-free synthesis of 1,1-diphenylvinylsulfides with thiols via thioetherification under continuous-flow conditions

A continuous-flow chemistry facilitated protocol that allows efficient access to a novel aggregation-induced emission (AIE) luminogen 1,1-diphenylvinylsulfides utilizing thiols under metal-free and mild conditions.

Chemoselective semihydrogenation of alkynes catalyzed by manganese(i)-PNP pincer complexes

A first homogeneous manganese catalyzed chemoselective semihydrogenation of alkynes to Z-olefins in the presence of molecular hydrogen is described.

Ligand-Promoted Iridium-Catalyzed Transfer Hydrogenation of Terminal Alkynes with Ethanol and Its Application

A ligand-promoted iridium-catalyzed transfer hydrogenation of terminal alkynes with ethanol and its application has been developed. Highly chemical selectivity control is achieved based on ligand regulation. 1,2-Bis(diphenylphosphino)ethane was found to be critical for the transfer hydrogenation of alkynes. The general applicability of this procedure is highlighted by the synthesis of 30 terminal alkenes with a good yield. In addition, we conducted drug effect studies of phenelzine using zebrafish as the vertebrate model. Phenelzine shows a significant effect on promoting vascular proliferation and inhibiting nerve growth. The results of these studies have an important reference value for promoting drug research in cerebrovascular diseases, epilepsy, mania, and psychosis.

Role of Alkaline-Earth Metal-Catalyst: A Theoretical Study of Pyridines Hydroboration

Density functional theory (DFT) calculations have been performed to investigate the mechanism of alkaline-earth-metal-catalyzed hydroboration of pyridines with borane. In this reaction, the active catalytic species is considered to be an alkaline earth metal hydride complex when the corresponding alkaline earth metal is used as the catalyst. The theoretical results reveal that initiation of the catalytic cycle is hydride transfer to generate a magnesium hydride complex when β-diimine alkylmagnesium is used as a pre-catalyst. The magnesium hydride complex can undergo coordination of the pyridine reactant followed by hydride transfer to form a dearomatized magnesium pyridine intermediate. Coordination of borane and hydride transfer from borohydride to magnesium then give the hydroboration product and regenerate the active magnesium hydride catalyst. The rate-determining step of the catalytic cycle is hydride transfer to pyridine with a free energy barrier of 29.7 kcal/mol. Other alkaline earth metal complexes, including calcium and strontium complexes, were also considered. The DFT calculations show that the corresponding activation free energies for the rate-determining step of this reaction with calcium and strontium catalysts are much lower than with the magnesium catalyst. Therefore, calcium and strontium complexes can be used as the catalyst for the reaction, which could allow mild reaction conditions.

Ligand-controlled iridium-catalyzed semihydrogenation of alkynes with ethanol: highly stereoselective synthesis of E- and Z-alkenes

A ligand-controlled iridium-catalyzed semihydrogenation of alkynes to E- and Z-alkenes with ethanol was developed. Effective selectivity control was achieved by ligand regulation. The use of 1,2-bis(diphenylphosphino)ethane (DPPE) and 1,5-cyclooctadiene (COD) was critical for the stereoselective semihydrogenation of alkynes. The general applicability of this procedure was highlighted by the synthesis of more than 40 alkenes, with good stereoselectivities. The value of our approach in practical applications was investigated by studying the effects of pinosylvin and 4,4'-dihydroxystilbene (DHS) on zebrafish as a vertebrate model.

Mechanistic insight into the silver-catalyzed cycloaddition synthesis of 1,4-disubstituted-1,2,3-triazoles: the key role of silver

By using DFT calculations, we disclose the reason why silver(i) catalytically promotes the activity and regioselectivity of the cycloaddition of 1,4-disubstituted-1,2,3-triazoles.

Theoretical study of the ligand effect on NHC–cobalt-catalyzed hydrogenation of ketones

Theoretical study of ketone hydrogenation revealed that the catalyst regeneration step is more sensitive to the ligand effect.

The mechanism and origin of the regioselectivity of cobalt-catalyzed annulation of allenes with benzamide: a computational study

Thrimurtulu et al. recently reported unprecedented cobalt-catalyzed annulation of allenes with benzamide (N. Thrimurtulu, A. Dey, D. Maiti, C. M. R. Volla, Angew. Chem., Int. Ed., 2016, 55, 12361-12365). In this reaction, the substituent on the allene controls the regioselectivity for the formation of either dihydroisoquinolin-1(2H)-one or isoquinolin-1(2H)-one. In the present study, density functional theory calculations were performed to investigate the detailed reaction mechanism and the origin of the experimentally observed regioselectivity. A systematic search shows that the electronic and steric effects of the substituent on the allene determine which of the two allene insertions is followed, and thus determine the regioselectivity. The bulky diphenylphosphonate and two phenyl substituents of the allenylphosphonate and diarylallene favor C1[double bond, length as m-dash]C2 insertion, which eventually leads to the formation of isoquinolin-1(2H)-one. In contrast, for the arylallene, which has a relatively electron-rich C2[double bond, length as m-dash]C3 bond, C2[double bond, length as m-dash]C3 insertion is favored and eventually leads to the formation of dihydroisoquinolin-1(2H)-one. The calculations also explain why annulation rather than hydroarylation of benzamide with allenylphosphonate occurs with a cobalt catalyst.