Limits of detection for the determination of mono- and dicarboxylic acids using gas and liquid chromatographic methods coupled with mass spectrometry

Denoising Autoencoder Normalization for Large-Scale Untargeted Metabolomics by Gas Chromatography-Mass Spectrometry

Large-scale metabolomics assays are widely used in epidemiology for biomarker discovery and risk assessments. However, systematic errors introduced by instrumental signal drifting pose a big challenge in large-scale assays, especially for derivatization-based gas chromatography-mass spectrometry (GC-MS). Here, we compare the results of different normalization methods for a study with more than 4000 human plasma samples involved in a type 2 diabetes cohort study, in addition to 413 pooled quality control (QC) samples, 413 commercial pooled plasma samples, and a set of 25 stable isotope-labeled internal standards used for every sample. Data acquisition was conducted across 1.2 years, including seven column changes. In total, 413 pooled QC (training) and 413 BioIVT samples (validation) were used for normalization comparisons. Surprisingly, neither internal standards nor sum-based normalizations yielded median precision of less than 30% across all 563 metabolite annotations. While the machine-learning-based SERRF algorithm gave 19% median precision based on the pooled quality control samples, external cross-validation with BioIVT plasma pools yielded a median 34% relative standard deviation (RSD). We developed a new method: systematic error reduction by denoising autoencoder (SERDA). SERDA lowered the median standard deviations of the training QC samples down to 16% RSD, yielding an overall error of 19% RSD when applied to the independent BioIVT validation QC samples. This is the largest study on GC-MS metabolomics ever reported, demonstrating that technical errors can be normalized and handled effectively for this assay. SERDA was further validated on two additional large-scale GC-MS-based human plasma metabolomics studies, confirming the superior performance of SERDA over SERRF or sum normalizations.

A functionally conserved STORR gene fusion in Papaver species that diverged 16.8 million years ago

The STORR gene fusion event is considered essential for the evolution of the promorphinan/morphinan subclass of benzylisoquinoline alkaloids (BIAs) in opium poppy as the resulting bi-modular protein performs the isomerization of (S)- to (R)-reticuline essential for their biosynthesis. Here, we show that of the 12 Papaver species analysed those containing the STORR gene fusion also contain promorphinans/morphinans with one important exception. P. californicum encodes a functionally conserved STORR but does not produce promorphinans/morphinans. We also show that the gene fusion event occurred only once, between 16.8-24.1 million years ago before the separation of P. californicum from other Clade 2 Papaver species. The most abundant BIA in P. californicum is (R)-glaucine, a member of the aporphine subclass of BIAs, raising the possibility that STORR, once evolved, contributes to the biosynthesis of more than just the promorphinan/morphinan subclass of BIAs in the Papaveraceae.

Standard-Free Quantification of Dicarboxylic Acids: Case Studies with Salt-Rich Effluents and Serum

The present study evaluates the ionization efficiency (IE) of linear and branched C₂-C₁₄ dicarboxylic acids (DCAs) by electrospray ionization (ESI) under different conditions. The influence of the concentration of organic modifier (MeOH); mobile phase additive; and its concentration, pH, and DCA structure on IE values is studied using flow injection analysis. The IE values of DCAs increase with the increase of MeOH concentration but also decrease with an increase of pH. The former is due to the increase in solvent evaporation rates; the latter is caused by an ion-pairing between the diacid and the cation (ammonium), which is confirmed by the study with different amines. The investigation of DCA ionization in the presence of different acidic mobile phase additives showed that a significant improvement in the (-)ESI responses of analytes was achieved in the presence of weak hydrophobic carboxylic acids, such as butyric or propanoic acid. Conversely, the use of strong carboxylic acids, such as trichloroacetic acid, was found to cause signal suppression. The results of the IE studies were used to develop the liquid chromatography-high-resolution mass spectrometry (LC-HRMS) method that provided instrumental limits of detection in the range from 6 to 180 pg. Furthermore, upon applying the nonparametric Gaussian process, a model for the prediction of IE values was developed, which contains the number of carbons in the molecule and MeOH concentration as model parameters. As a case study, dicarboxylic acids are quantified in salt-rich effluent and blood serum samples using the developed LC-HRMS method.

Catalytic Formation of Lactic and Levulinic Acids from Biomass Derived Monosaccarides through Sn-Beta Formed by Impregnation

In the present study, the use of Sn-Beta zeolite to facilitate the conversion of lignocellulosic biomass-derived glucose and xylose into lactic and levulinic acid was explored. The reactions were carried out in a batch reactor using water as the solvent. Water is the preferred solvent over methanol as it reduces downstream product acid recovery and purification complexity. Optimization experiments were performed for reaction temperature and residence time. Under optimized reaction conditions, the Sn-Beta facilitated reaction of a pure sugar solution resulted in lactic acid yields of 13 and 19 wt% of inlet carbon of glucose and xylose, respectively, plus levulinic acid yields of 18 and 0.8 wt%, respectively. When actual biomass-derived sugar solutions were tested, the yields of lactic acid were significantly higher than those from the optimized model solution experiments with lactic acid yields of 34 wt%. These biomass-derived sugar solutions contained residual levels of CaSO4 from the neutralization step of the hydrolysis process. Further experiments were performed to examine the potential effects from CaSO4 contributing to this increase. It was found that the sulfate ions increased the Brønsted basicity and the calcium increased the Lewis acidity of the reaction solution, and that the combination of both effects increased the conversion of the original sugars into lactic acid. These effects were verified by testing other organic bases to isolate the Brønsted acid neutralization effect and the Lewis acid enhancement effect. The addition of CaSO4 resulted in attractive lactic acid yields, 68 wt% and 50 wt% of inlet carbon from pure glucose and xylose solutions, respectively. Increasing the actual corn stover and forage sorghum derived sugars concentration (in water) allowed lactic acids yields of greater than 60 wt% to be achieved. When the optimized Sn-Beta reaction system was applied to corn stover and forage sorghum mixtures, it was found that the ratio of lactic-to-levulinic acid generated was inversely dependent upon the glucose-to-xylose ratio in the recovered sugar mixture.

Designing a magnetic inductive micro-electrode for virus monitoring: modelling and feasibility for hepatitis B virus

A simple model is designed for an inductive immunosensor in which the magnetic particles are attached to the bioreceptors to form a sandwich on the surface of an inductor. The inductor consists of a coil covered on a silicon oxide wafer. The coil comprises 250 turns of a planar gold wire, which is approximately 200 nm thick and 392 mm long, placed in a circle with a diameter of 2 mm. The model is well characterised by controlling the geometrical and electrical parameters and also the permeability of the magnetic material. To evaluate the feasibility of the model for virus monitoring, a novel inductive immunosensor is designed and for the first time applied for the detection of hepatitis B surface antigen (HBsAg). At first, Fab' segment of primary anti-HBsAg is immobilised on the coil. Then, the coil is exposed to HBsAg and the complex is introduced to a secondary antibody conjugated with magnetic particles to form an immune-sandwich. Finally, the influence of magnetic particles on the coil inductance is recorded and used as a signal for HBsAg detection. The magnetic inductive immunosensor showed specific responses toward HBsAg with the detection limit of 1 ng mL^-1, linear range of 1 to 200 ng mL^-1, and a sensitivity of 6 × 10^-4 mL ng^-1. The experimental results showed a very good agreement with simulation data indicating the compatibility of sensor sensitivity to the expected theoretical values. Graphical abstract.

Impurity analysis of 2-butynoic acid by ion chromatography-mass spectrometry

Small organic acids are widely used within the pharmaceutical industry but can be difficult to analyse. Ion chromatography is a suitable technique for the analysis of these acids but method development can be hindered as mass spectrometry is not often used as a detector; this means that peak tracking and peak purity cannot be performed. The authors report method development for the analysis of 2-butynoic acid, where by using electrospray ionisation mass spectrometry, peak purity was investigated and the presence of co-eluting impurities determined. Optimisation of the additives in the make-up flow to the mass spectrometer was shown to have an impact on the response observed. A standard series of organic acids were analysed spiked in to 2-butynoic acid at levels representative of impurities, the presence of the 2-butynoic acid did not impact the linearity or limit of detection observed for the acids; R² values greater than 0.98 were obtained for all acids with and without the presence of 2-butynoic acid with a limit of detection at 1 ppb for all but one of the acids.

A Zwitterionic Hydrophilic Interaction Liquid Chromatographic Photo Diode Array Method as a Tool to Investigate Oxalic Acid in Bees: Comparison with Mass Spectrometric Methods

Background: Oxalic acid constitutes beekeepers′ leading choice for the battle of the parasitic mite Varroa destructor considering its efficacy, low cost, and easy application. Nevertheless, its broad use and reported synergistic effects prompted us to explore analytical methodologies for its determination in honeybees, especially after death incidents. Methods: The extraction of oxalic acid from bees was conducted by applying a simplified water extraction protocol. Oxalic acid′s content in honeybees was investigated through a novel zwiterionic hydrophilic interaction liquid chromatographic coupled to photo diode array (ZIC-HILIC-PDA) method and paralleled to gas/liquid chromatographic mass spectrometric methods. Results: The analytical method was validated, exhibiting a sufficient limit of quantification (LOQ) of 1.46 μg/g bee bw and precision and accuracy within the acceptable statistical limits as expressed by the relative standard deviation (RSD%) obtained from repeatability-reproducibility and recovery studies <12.5%. The application of the analytical method to 45 real honeybee samples demonstrated a fluctuation of oxalic acid’s concentrations from 1.6 to 1202.4 μg/g bee bw, verifying its frequent use in apiculture, exemplified by an overall 19% of positive samples. Conclusions: ZIC-HILIC-PDA proves a pivotal and alternative method to mass spectrometry tools in the determination of oxalic acid and other organic acids in honeybees and pertinent commodities.

Influence of early stages of triglyceride pyrolysis on the formation of PAHs as coke precursors

Molecular beam (MB) time-of-flight mass spectrometry has been used to investigate thermal decomposition of triolein, to reveal the mechanisms of low temperature soot/coke formation characteristic for triglycerides (TGs). Mass detected pyrolysis products were observed at incremented temperatures using both VUV single photon ionization (general product detection) and REMPI based selective detection of aromatic products. To augment the simple mass characterizations, we have employed stoichiometric considerations; we have supplemented the analysis further by using the detailed information available from product analysis of batch reactor TG cracking. Both the VUV photoionization and batch reactor studies indicated that formation of C7-sized stable products is a marker of significant triolein decomposition that is coupled with PAH formation. A significant fraction of the C7 species observed likely formed as a result of a C-C bond scission at the allylic position to the ω-9 double bond of oleic acid. REMPI detection indicated a high specificity for PAH formation at three distinct molecular weight values, 276, 352 and 444 amu (the latter being a fullerene precursor). The stoichiometric analysis has shown that these PAHs likely arise from condensation reactions of either C7- or C8-sized fragments (three, four and five, respectively). The C8-sized intermediate would become essential whenever the PAH product of C7 fragment condensation contained an odd number of carbon atoms, resulting in a less stable aromatic structure with an incomplete double bond conjugation. MB experiments involving either addition or in situ generation of hydrogen resulted in an enhancement of lower molecular weight PAH formation, i.e., a decrease in the effective number of condensing fragments. In contrast, an increase in temperature yielded the opposite effect.

Effects of Leachates from UV-Weathered Microplastic in Cell-Based Bioassays

Standard ecotoxicological testing of microplastic does not provide insight into the influence that environmental weathering by, e.g., UV light has on related effects. In this study, we leached chemicals from plastic into artificial seawater during simulated UV-induced weathering. We tested largely additive-free preproduction polyethylene, polyethylene terephthalate, polypropylene, and polystyrene and two types of plastic obtained from electronic equipment as positive controls. Leachates were concentrated by solid-phase extraction and dosed into cell-based bioassays that cover (i) cytotoxicity; (ii) activation of metabolic enzymes via binding to the arylhydrocarbon receptor (AhR) and the peroxisome proliferator-activated receptor (PPARγ); (iii) specific, receptor-mediated effects (estrogenicity, ERα); and (iv) adaptive response to oxidative stress (AREc32). LC-HRMS analysis was used to identify possible chain-scission products of polymer degradation, which were then tested in AREc32 and PPARγ. Explicit activation of all assays by the positive controls provided proof-of-concept of the experimental setup to demonstrate effects of chemicals liberated during weathering. All plastic leachates activated the oxidative stress response, in most cases with increased induction by UV-treated samples compared to dark controls. For PPARγ, polyethylene-specific effects were partially explained by the detected dicarboxylic acids. Since the preproduction plastic showed low effects often in the range of the blanks future studies should investigate implications of weathering on end consumer products containing additives.

Simultaneous high-temperature gas chromatography with flame ionization and mass spectrometric analysis of monocarboxylic acids and acylglycerols in biofuels and biofuel intermediate products

Triacyl-, diacyl- and monoacylglycerols (TAGs, DAGs, MAGs) along with monocarboxylic acids (MCAs) are intermediate products in many triacylglycerol oil-to-biofuel conversion pathways. Accumulation of these compounds leads to poor biofuel characteristics and may result in fuel system damage. We developed a method for simultaneous identification and quantification of a wide range of MCAs (C₄-C₁₈), MAGs, DAGs, and TAGs. The method is based on trimethylsilylation followed by high temperature GC with programmed temperature vaporizer (PTV) injection coupled to parallel FID and MS detectors (HTGC-FID/MS). To minimize the discrimination of both low and high molecular weight species typically occurring on the injector, we optimized injection conditions using a central composite design. The critical variables were the time at initial temperature (40 °C), splitless time, and the interaction between these two parameters. Among three tested electron ionization source/quadrupole analyzer temperatures, a 350/200 °C setting provided the highest response and signal-to-noise ratio for TAGs and did not have an effect on MAGs and DAGs. Similar results were obtained when quantifying target analytes in intermediate products of soybean oil cracking with FID and MS (using specific acylglycerol fragmentation ions). The instrumental FID limits of detection (LODs) were 0.07-0.27 ng for most of the target analytes. Selected ion monitoring (SIM) LODs were 0.01-0.05 ng for MCAs and 0.03-0.14 ng for acylglycerols. For the total ion current (TIC), LODs observed increased with acyl chain length and degree of unsaturation, resulting in an increase from 0.05 to 0.18 ng for MCAs (C₅ to C₁₈) and from 0.03 to 1.8 ng for acylglycerols (TAGs C₈ to C₂₂). Deviations in the repeatability of sample preparation, intra- and inter-day analyses, including sample stability over an eight-day time period, did not exceed 10% variance. These results demonstrate that the developed method is accurate and robust for the determination of acylglycerols and MCAs produced during the processing of TAGs into biofuels.

An optimized two-step derivatization method for analyzing diethylene glycol ozonation products using gas chromatography and mass spectrometry

The ozonation of hydroxyl compounds (e.g., sugars and alcohols) gives a broad range of products such as alcohols, aldehydes, ketones, and carboxylic acids. This study developed and optimized a two-step derivatization procedure for analyzing polar products of aldehydes and carboxylic acids from the ozonation of diethylene glycol (DEG) in a non-aqueous environment using gas chromatography-mass spectrometry. Experiments based on Central Composite Design with response surface methodology were carried out to evaluate the effects of derivatization variables and their interactions on the analysis. The most desirable derivatization conditions were reported, i.e., oximation was performed at room temperature overnight with the o-(2,3,4,5,6-pentafluorobenzyl) hydroxyl amine to analyte molar ratio of 6, silylation reaction temperature of 70°C, reaction duration of 70min, and N,O-bis(trimethylsilyl)-trifluoroacetamide volume of 12.5μL. The applicability of this optimized procedure was verified by analyzing DEG ozonation products in an ultrafine condensation particle counter simulation system.

Evaluation of microbial triglyceride oil purification requirements for the CelTherm process: an efficient biochemical pathway to renewable fuels and chemicals

CelTherm is a biochemical process to produce renewable fuels and chemicals from lignocellulosic biomass. The present study's objective was to determine the level of treatment/purity of the microbial triacylglyceride oil (TAG) necessary to facilitate fuel production. After a unique microbe aerobically synthesizes TAG from biomass-derived sugars, the microbes were harvested and dried then crude TAG was chemically extracted from the residual biomass. Some TAGs were further purified to hydrotreating process requirements. Both grades were then noncatalytically cracked into a petroleum-like intermediate characterized by gas chromatography. Experiments were repeated using refined soybean oil for comparison to previous studies. The products from crude microbial TAG cracking were then further refined into a jet fuel product. Fuel tests indicate that this jet fuel corresponds to specifications for JP-8 military turbine fuel. It was thus concluded that the crude microbial TAG is a suitable feedstock with no further purification required, demonstrating CelTherm's commercial potential.

Decomposition of L-valine under nonthermal dielectric barrier discharge plasma

L-Valine solutions in water and phosphate buffer were treated with nonthermal plasma generated by using a dielectric barrier discharge (DBD) device and the products generated after plasma treatments were characterized by (1)H NMR and GC-MS. Our results demonstrate that L-valine is decomposed to acetone, formic acid, acetic acid, threo-methylaspartic acid, erythro-methlyaspartic acid, and pyruvic acid after direct exposure to DBD plasma. The concentrations of these compounds are time-dependent with plasma treatment. The mechanisms of L-valine under the DBD plasma are also proposed in this study. Acetone, pyruvic acid, and organic radicals (•)CHO, CH3COCH2OO(•) (acetonylperoxy), and CH3COC(OH)2OO(•) (1,1-dihydroxypropan-2-one peroxy) may be the determining chemicals in DNA damage.