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Marques HM. The inorganic chemistry of the cobalt corrinoids - an update. J Inorg Biochem 2023; 242:112154. [PMID: 36871417 DOI: 10.1016/j.jinorgbio.2023.112154] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Revised: 01/23/2023] [Accepted: 01/26/2023] [Indexed: 02/05/2023]
Abstract
The inorganic chemistry of the cobalt corrinoids, derivatives of vitamin B12, is reviewed, with particular emphasis on equilibrium constants for, and kinetics of, their axial ligand substitution reactions. The role the corrin ligand plays in controlling and modifying the properties of the metal ion is emphasised. Other aspects of the chemistry of these compounds, including their structure, corrinoid complexes with metals other than cobalt, the redox chemistry of the cobalt corrinoids and their chemical redox reactions, and their photochemistry are discussed. Their role as catalysts in non-biological reactions and aspects of their organometallic chemistry are briefly mentioned. Particular mention is made of the role that computational methods - and especially DFT calculations - have played in developing our understanding of the inorganic chemistry of these compounds. A brief overview of the biological chemistry of the B12-dependent enzymes is also given for the reader's convenience.
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Affiliation(s)
- Helder M Marques
- Molecular Sciences Institute, School of Chemistry, University of the Witwatersrand, Johannesburg 2050, South Africa.
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2
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Spataru T. The complete electronic structure and mechanism of the methionine synthase process as determined by the MCSCF method. J Organomet Chem 2021. [DOI: 10.1016/j.jorganchem.2021.121811] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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3
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Sajan A, Birke RL. The Reductive Cleavage Mechanism and Complex Stability of Glutathionyl-Cobalamin in Acidic Media. ELECTROANAL 2016. [DOI: 10.1002/elan.201600341] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Abin Sajan
- Department of Chemistry and Biochemistry; The City College of the City University of New York; NY 10031 USA
| | - Ronald L. Birke
- Department of Chemistry and Biochemistry; The City College of the City University of New York; NY 10031 USA
- Ph. D. Program in Chemistry; The Graduate Center of the City University of New York; 10016 USA
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4
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Spataru T, Fernandez F. The Nature of the Co-C Bond Cleavage Processes in Methylcob(II)Alamin and Adenosylcob(III)Alamin. CHEMISTRY JOURNAL OF MOLDOVA 2016. [DOI: 10.19261/cjm.2016.11(1).01] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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5
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Murshid N, Wang X. Iron-Carbonyl Aqueous Vesicles (MCsomes) by Hydration of [Fe(CO){CO(CH2)5CH3}(Cp)(PPh3)] (FpC6): Highly Integrated Colloids with Aggregation-Induced Self-Enhanced IR Absorption (AI-SEIRA). Chemistry 2015; 21:19223-30. [PMID: 26563745 DOI: 10.1002/chem.201502121] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2015] [Indexed: 11/11/2022]
Abstract
Self-assembly of hydrophobic molecules into aqueous colloids contradicts common chemical intuition, but has been achieved through hydration of [Fe(CO){CO(CH2)5CH3}(Cp)(PPh3)] (FpC6). FpC6 has no surface activity, no NMR signals in D2O and no critical aggregation concentration (CAC) in H2O. The molecule, however, contains both acyl and terminal CO groups that are prone to being hydrated. By adding water to a solution in THF, self-assembly of FpC6 can be initiated through water-carbonyl interactions (WCIs) with the highly polarized acyl CO groups. This aggregation subsequently enhances the hydration of the acyl CO groups and also induces the WCI of otherwise unhydrated terminal CO groups. The resultant metal-carbonyl aggregates have been proved to be bilayer vesicles with iron complexes exposed towards water and alkyl chains forming inner walls (MCsomes). These MCsomes show high structure integration upon dilution due to the hydrophobic nature of the building blocks. The highly polarized CO groups on the surface of the MCsomes result in a negative zeta potential (-65 mV) and create a local electric field, which significantly enhances the IR absorption of CO groups by more than 100-fold. This is the first discovery of aggregation-induced self-enhanced IR absorption (AI-SRIRA) without the assistant of external dielectric substrates. Highly integrated MCsomes are, therefore, promising as a novel group of materials, for example, for IR-based sensing and imaging.
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Affiliation(s)
- Nimer Murshid
- Department of Chemistry and Waterloo Institute for Nanotechnology, University of Waterloo, 200 University Avenue west, Waterloo, Ontario, N2L 3G1 (Canada)
| | - Xiaosong Wang
- Department of Chemistry and Waterloo Institute for Nanotechnology, University of Waterloo, 200 University Avenue west, Waterloo, Ontario, N2L 3G1 (Canada).
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Kumar N, Kuta J, Galezowski W, Kozlowski PM. Electronic Structure of One-Electron-Oxidized Form of the Methylcobalamin Cofactor: Spin Density Distribution and Pseudo-Jahn–Teller Effect. Inorg Chem 2013; 52:1762-71. [DOI: 10.1021/ic3013443] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Neeraj Kumar
- Department of Chemistry, University of Louisville,
Louisville, Kentucky 40292, United States
| | - Jadwiga Kuta
- Department of Chemistry, University of Louisville,
Louisville, Kentucky 40292, United States
| | - Wlodzimierz Galezowski
- Department of Chemistry, A. Mickiewicz University,
Umultowska 89b, 61-614 Poznan, Poland
| | - Pawel M. Kozlowski
- Department of Chemistry, University of Louisville,
Louisville, Kentucky 40292, United States
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7
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Costentin C, Passard G, Robert M, Savéant JM. Concertedness in proton-coupled electron transfer cleavages of carbon–metal bonds illustrated by the reduction of an alkyl cobalt porphyrin. Chem Sci 2013. [DOI: 10.1039/c2sc21788k] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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8
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Kozlowski PM, Kamachi T, Kumar M, Yoshizawa K. Initial step of B12-dependent enzymatic catalysis: energetic implications regarding involvement of the one-electron-reduced form of adenosylcobalamin cofactor. J Biol Inorg Chem 2011; 17:293-300. [DOI: 10.1007/s00775-011-0850-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2011] [Accepted: 09/28/2011] [Indexed: 11/29/2022]
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Kumar N, Jaworska M, Lodowski P, Kumar M, Kozlowski PM. Electronic Structure of Cofactor−Substrate Reactant Complex Involved in the Methyl Transfer Reaction Catalyzed by Cobalamin-Dependent Methionine Synthase. J Phys Chem B 2011; 115:6722-31. [DOI: 10.1021/jp200945a] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Neeraj Kumar
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292, United States
| | - Maria Jaworska
- Department of Theoretical Chemistry, Institute of Chemistry, University of Silesia, Szkolna 9, PL-40 006 Katowice, Poland
| | - Piotr Lodowski
- Department of Theoretical Chemistry, Institute of Chemistry, University of Silesia, Szkolna 9, PL-40 006 Katowice, Poland
| | - Manoj Kumar
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292, United States
| | - Pawel M. Kozlowski
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292, United States
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Alfonso-Prieto M, Biarnés X, Kumar M, Rovira C, Kozlowski PM. Reductive cleavage mechanism of Co-C bond in cobalamin-dependent methionine synthase. J Phys Chem B 2011; 114:12965-71. [PMID: 20853870 DOI: 10.1021/jp1043738] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The key step in the catalytic cycle of methionine synthase (MetH) is the transfer of a methyl group from the methylcobalamin (MeCbl) cofactor to homocysteine (Hcy). This mechanism has been traditionally viewed as an S(N)2-type reaction, but a different mechanism based on one-electron reduction of the cofactor (reductive cleavage) has been recently proposed. In this work, we analyze whether this mechanism is plausible from a theoretical point of view. By means of a combination of gas-phase as well as hybrid QM/MM calculations, we show that cleavage of the Co-C bond in a MeCbl···Hcy complex (Hcy = methylthiolate substrate (Me-S(-)), a structural mimic of deprotonated homocysteine) proceeds via a [Co(III)(corrin(*-))]-Me···*S-Me diradical configuration, involving electron transfer (ET) from a π*(corrin)-type state to a σ*(Co-C) one, and the methyl transfer displays an energy barrier ≤8.5 kcal/mol. This value is comparable to the one previously computed for the alternative S(N)2 reaction pathway (10.5 kcal/mol). However, the ET-based reductive cleavage pathway does not impose specific geometrical and distance constraints with respect to substrate and cofactor, as does the S(N)2 pathway. This might be advantageous from the enzymatic point of view because in that case, a methyl group can be transferred efficiently at longer distances.
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Affiliation(s)
- Mercedes Alfonso-Prieto
- Computer Simulation and Modeling Laboratory (CoSMoLab), Parc Científic de Barcelona, Baldiri Reixac 10-12, 08028 Barcelona, Spain
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Kozlowski PM, Kamachi T, Kumar M, Nakayama T, Yoshizawa K. Theoretical Analysis of the Diradical Nature of Adenosylcobalamin Cofactor−Tyrosine Complex in B12-Dependent Mutases: Inspiring PCET-Driven Enzymatic Catalysis. J Phys Chem B 2010; 114:5928-39. [DOI: 10.1021/jp100573b] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Pawel M. Kozlowski
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292, and Institute for Materials Chemistry and Engineering, Kyushu University, Nishi-ku, Fukuoka 819-0395, Japan
| | - Takashi Kamachi
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292, and Institute for Materials Chemistry and Engineering, Kyushu University, Nishi-ku, Fukuoka 819-0395, Japan
| | - Manoj Kumar
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292, and Institute for Materials Chemistry and Engineering, Kyushu University, Nishi-ku, Fukuoka 819-0395, Japan
| | - Tomonori Nakayama
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292, and Institute for Materials Chemistry and Engineering, Kyushu University, Nishi-ku, Fukuoka 819-0395, Japan
| | - Kazunari Yoshizawa
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292, and Institute for Materials Chemistry and Engineering, Kyushu University, Nishi-ku, Fukuoka 819-0395, Japan
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12
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Kumar M, Kozlowski PM. Role of Tyrosine Residue in the Activation of Co−C Bond in Coenzyme B12-Dependent Enzymes: Another Case of Proton-Coupled Electron Transfer? J Phys Chem B 2009; 113:9050-4. [DOI: 10.1021/jp903878y] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Manoj Kumar
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292
| | - Pawel M. Kozlowski
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292
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13
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Galezowski W, Kuta J, Kozlowski PM. DFT Study of Co−C Bond Cleavage in the Neutral and One-Electron-Reduced Alkyl−Cobalt(III) Phthalocyanines. J Phys Chem B 2008; 112:3177-83. [PMID: 18271575 DOI: 10.1021/jp0769678] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Wlodzimierz Galezowski
- Department of Chemistry, A. Mickiewicz University, Grunwaldzka 6, 60-780 Poznan, Poland, and Department of Chemistry, University of Louisville, Louisville, Kentucky 40292
| | - Jadwiga Kuta
- Department of Chemistry, A. Mickiewicz University, Grunwaldzka 6, 60-780 Poznan, Poland, and Department of Chemistry, University of Louisville, Louisville, Kentucky 40292
| | - Pawel M. Kozlowski
- Department of Chemistry, A. Mickiewicz University, Grunwaldzka 6, 60-780 Poznan, Poland, and Department of Chemistry, University of Louisville, Louisville, Kentucky 40292
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Kozlowski PM, Kuta J, Galezowski W. Reductive Cleavage Mechanism of Methylcobalamin: Elementary Steps of Co−C Bond Breaking. J Phys Chem B 2007; 111:7638-45. [PMID: 17567060 DOI: 10.1021/jp066972w] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Density functional theory has been applied to the investigation of the reductive cleavage mechanism of methylcobalamin (MeCbl). In the reductive cleavage of MeCbl, the Co-C bond is cleaved homolytically, and formation of the anion radical ([MeCbl]*-) reduces the dissociation energy by approximately 50%. Such dissociation energy lowering in [MeCbl]*- arises from the involvement of two electronic states: the initial state, which is formed upon electron addition, has dominant pi*corrin character, but when the Co-C bond is stretched the unpaired electron moves to the sigma*Co-C state, and the final cleavage involves the three-electron (sigma)2(sigma*)1 bond. The pi*corrin-sigma*Co-C states crossing does not take place at the equilibrium geometry of [MeCbl]*- but only when the Co-C bond is stretched to 2.3 A. In contrast to the neutral cofactor, the most energetically efficient cleavage of the Co-C bond is from the base-off form. The analysis of thermodynamic and kinetic data provides a rationale as to why Co-C cleavage in reduced form requires prior departure of the axial base. Finally, the possible connection of present work to B12 enzymatic catalysis and the involvement of anion-radical-like [MeCbl]*- species in relevant methyl transfer reactions is discussed.
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Affiliation(s)
- Pawel M Kozlowski
- Department of Chemistry, University of Louisville, Louisville, KY 40292, USA.
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