Adsorption of phenanthrene on activated carbon increases mineralization rate by specific bacteria

Biochar-mediated abiotic and biotic degradation of halogenated organic contaminants - A review

Prevailing global increases in population, urbanization, and agricultural production are causing increased pressures on water resources, especially as the use of chemicals in agriculture, industry, and medicine provide new challenges for water treatment and reuse. Organohalogen compounds are persistent contaminants that often evade current wastewater treatment technologies, resulting in their accumulation in the environment and posing a serious threat to ecosystem health. Recent advances in understanding pyrogenic carbons as electron shuttling and storing materials have exposed their potential for enhancing the dehalogenation and overall degradation of organohalide contaminants in soil, sediment, surface water, and wastewater systems. Biochar is a porous carbonaceous material produced during the thermochemical decomposition of biomass feedstock in the presence of little or no oxygen (pyrolysis). Interest in biochar for application towards environmental remediation is largely based on its three distinct benefits: I) carbon sequestration to offset greenhouse gas emissions, II) adsorption of (in-) organic contaminants and nutrients, and III) a strong electron exchange capacity. Due to the innate complexity of biochar materials, several electron transfer mechanisms exist by which biochar may mediate contaminant degradation. These electron transfer pathways include electron-accepting and donating cycles through redox-active functional groups and direct electron transfer via conductive carbon matrices. These mechanisms are responsible for biochar's participation in multiple redox-driven biogeochemical transformations with proven consequences for effective organohalogen remediation. This literature review summarizes the current knowledge on the mechanisms and processes through which biochar can directly or indirectly mediate the transformation of organohalogen compounds under various environmental conditions. Perspectives and research directions for future application of biochars for targeted remediation strategies are also discussed.

Oil Absorbent Polypropylene Particles Stimulate Biodegradation of Crude Oil by Microbial Consortia

Oil absorbent particles made from surface-modified polypropylene can be used to facilitate the removal of oil from the environment. In this study, we investigated to what extent absorbed oil was biodegraded and how this compared to the biodegradation of oil in water. To do so, we incubated two bacterial communities originating from the Niger Delta, an area subject to frequent oil spills, in the presence and absence of polypropylene particles. One community evolved from untreated soil whereas the second evolved from soil pre-exposed to oil. We observed that the polypropylene particles stimulated the growth of biofilms and enriched species from genera Mycobacterium, Sphingomonas and Parvibaculum. Cultures with polypropylene particles degraded more crude oil than those where the oil was present in suspension regardless of whether they were pre-exposed or not. Moreover, the community pre-exposed to crude oil had a different community structure and degraded more oil than the one from untreated soil. We conclude that the biodegradation rate of crude oil was enhanced by the pre-exposure of the bacterial communities to crude oil and by the use of oil-absorbing polypropylene materials. The data show that bacterial communities in the biofilms growing on the particles have an enhanced degradation capacity for oil.

Stimulation of phenanthrene and biphenyl degradation by biochar-conducted long distance electron transfer in soil bioelectrochemical systems

The bioelectrochemical degradation of organic pollutants has attracted considerable attention owing to its remarkable sustainability and low cost. However, the application of bioelectrochemical system (BES) for the degradation of pollutants in soils is hindered by limitations in the effective distance in the soil matrix. In this study, a biochar-amended BES was constructed to evaluate the degradation of organic pollutants. This system was expected to extend the electron transfer distance via conductive biochar in soils. The results showed that biochar pyrolyzed at 900 °C facilitated the degradation of phenanthrene (PHE) and biphenyl (BP) in the soil BES (SBES), reaching 86.4%-95.1% and 88.8%-95.3% in 27 days, respectively. The effective distance of SBESs was estimated to be 154-271 cm away from the electrode, which increased 1.9-3 fold after the addition of biochar. Microbial community and functional gene analysis confirmed that biochar enriched functional degrading bacteria. These findings demonstrate that the promotion of long-distance electron transfer and the formation of soil conductive networks can be achieved by biochar amendment. Thus, this study provides a basis for the effective degradation of for persistent organic pollutants in petroleum-contaminated soils using bioelectrochemical strategy.

Responses of phenanthrene degradation to the changes in bioavailability and microbial community structure in soils amended with biochars pyrolyzed at low and high temperatures

This study investigated the impact of wheat straw biochars pyrolyzed at temperatures of 100-700 ℃ (BC100-BC700) on biodegradation of phenanthrene in soils. During a 42-day experiment, biochar amendment reduced the biodegradation ratio of phenanthrene in soils by no change-77.0%. The biodegradation ratio decreased with the increase of pyrolysis temperature from 100 to 400 ℃ and then increased with the increase of pyrolysis temperature from 400 to 700 ℃, exhibiting a U-shape. Meanwhile, desorbing fraction of phenanthrene extracted by n-butanol declined with increasing pyrolysis temperature. Biochar-derived dissolved organic carbon (DOC) obviously influenced the soil DOC contents which were negatively correlated with the total relative abundances of dominant polycyclic aromatic hydrocarbon (PAH)-degraders. These results indicated that in soils amended with biochars pyrolyzed at low temperatures (i.e. 100-400 ℃), both the reduced bioavailability of phenanthrene and the reduced PAH-degrader abundance resulted in decreasing phenanthrene degradation with pyrolysis temperature. In soils amended with biochars pyrolyzed at high temperatures (i.e. 500-700 ℃; HT-biochars), two possible reasons contribute to increasing phenanthrene degradation with pyrolysis temperature: (1) high sorbed-phenanthrene concentration due to large specific surface area and high aromaticity of the biochars, and (2) the increased dominant PAH-degrader abundance for the removal of sorbed-phenanthrene due to the impact of HT-biochars on soil properties (mainly on DOC content).

Contribution of phenanthrene in different binding sites to its biodegradation in biochar-amended soils

Biochars can strongly sorb hydrophobic organic contaminants in soils. However, contribution of contaminants in different binding sites to their biodegradation in biochar-amended soils is not clear. In this work, wheat straw biochars were prepared at pyrolysis temperatures of 400 °C (BC400) and 700 °C (BC700). During a 42-day experiment, degradation rate constant of phenanthrene in soils was in the order of treatment without biochar (1.64 × 10-2 d-1) > treatment with BC700 (0.96 × 10-2 d-1) > treatment with BC400 (0.30 × 10-2 d-1). At the beginning, amendment of BC400 and BC700 reduced the rapidly desorbing fraction of phenanthrene in soils by 44.8% and 92.5%, respectively. At the end, both phenanthrene and microbial biomass highly concentrated on the biochar separated from soils. The results of a coupled model of desorption and biodegradation revealed that only phenanthrene in rapidly desorbing sites was degraded in BC400-amended soils, whereas degradation of phenanthrene in both rapidly and slowly desorbing sites occurred in BC700-amended soils, contributing 24.4% and 75.6% of the degradation, respectively. High fraction (>95%) of biodegradable phenanthrene in slowly desorbing sites was the key reason for higher biodegradation rate of phenanthrene in soils with BC700 than in soils with BC400.

Desorption Resistance of Polycyclic Aromatic Hydrocarbons in Biochars Incubated in Cow Ruminal Liquid in Vitro and in Vivo

Biochar is a new, promising, and sustainable feed additive alternative in agricultural production, which may, however, contain a considerable amount of polycyclic aromatic hydrocarbons (PAHs). As a measure of their bioaccessibility to ruminants, we quantified PAH concentrations in biochars before and after three different incubation experiments. Specifically, the biochars were subjected to (1) an aqueous cyclodextrin suspension with a contaminant trap as (infinite) sink, (2) an in vitro experiment with cow ruminal liquid and a contaminant trap, and (3) an in vivo experiment within cow rumen. Three different biochars were used that contained 13-407 mg/kg_dw of the sum of 16 U.S. EPA PAHs before the exposure. While experiment (1) resulted in no or minimal bioaccessibility (desorption resistance) of the PAHs expressed by their largely unaltered concentrations, experiments (2) and (3) caused concentration reductions on average by 35 and 56%, respectively, presumably mainly due to the presence of the ruminal fluid in (2) and (3), and the extended sorption capacity in (3). Thus, simple and "abiotic" passive sampling methods may not capture all processes contributing to bioaccessibility in complex biological systems. A comparison with average daily PAH intake of ruminants suggests that quality-controlled biochar containing <10 mg/kg_dw PAHs will not pose an increased risk when applied as a feed additive.

Modified clays alter diversity and respiration profile of microorganisms in long-term hydrocarbon and metal co-contaminated soil

Clays and surfactant‐modified clays (organoclays) are becoming popular as pollutant sorbents due to their high reactivity and low‐cost availability. However, the lack of field testing and data on ecotoxicity limits their application. Considering such aspects, this study assessed the impact of clay amendments to polycyclic aromatic hydrocarbons (PAHs)/cadmium (Cd)‐contaminated soil on microbial respiration profiles (active vs. inactive cells) using redox staining and the relative abundance and diversity of bacteria and archaea. These clay products are bentonite, cationic surfactant‐modified bentonite and palmitic acid‐grafted surfactant‐modified bentonite). After 70 days, the addition of bentonite and its modified forms altered microbial community structure mainly among dominant groups (Actinobacteria, Proteobacteria, Firmicutes and Chloroflexi) with effects varying depending on material loading to soil. Among amendments, fatty acid (palmitic acid) tailored cationic surfactant‐modified bentonite proved to be microbial growth supportive and significantly increased the number of respiration‐active microbial cells by 5% at a low dose of material (e.g. 1%). Even at high dose (5%), the similarity index using operational taxonomic units (OTUs) also indicates that this modified organoclay‐mixed soil provided only slightly different environment than control soil, and therefore, it could offer more biocompatibility than its counterpart organoclay at similar dose (e.g. cationic surfactant‐modified bentonite). This study promotes designing ‘eco‐safe’ clay‐based sorbents for environmental remediation.

Effects of Interfaces of Goethite and Humic Acid-Goethite Complex on Microbial Degradation of Methyl Parathion

Microbial degradation plays an essential role in the removal of hydrophobic organic compounds (HOCs) dispersed in soil and sediment, and its performance is greatly affected by mineral particles which regulate HOCs bioavailability by interfacial adsorption. Likewise, bacteria cells attach to the surfaces of mineral particles as well but how bacterial attachment affects biodegradation is largely unknown. Here we report inhibitory effects of goethite and humic acid (HA)-goethite complex addition on microbial degradation of methyl parathion (MP). Using attenuated total reflectance-Fourier transform infrared spectroscopy, we observed that the adhesion of bacterial cells responsible for MP degradation on goethite occurred and the adhesive strength increased over time. We then replaced goethite with phosphate-adsorbed goethite to weaken the goethite-bacteria association and the inhibition of MP biodegradation was alleviated. These results suggested the formation of goethite-bacteria association hinder MP biodegradation. Meanwhile, our results showed that HA coating prevented bacterial attachment on goethite particles along with a drastically increased MP adsorption by goethite. The combined effect would lead to decreased mass fluxes of MP to bacterial cells and could represent another mechanism responsible for the decreased degradation rate observed in the current study.

Microplastics Reduce Short-Term Effects of Environmental Contaminants. Part II: Polyethylene Particles Decrease the Effect of Polycyclic Aromatic Hydrocarbons on Microorganisms

Microplastic particles in terrestrial and aquatic ecosystems are currently discussed as an emerging persistent organic pollutant and as acting as a vector for hydrophobic chemicals. Microplastic particles may ultimately deposit and accumulate in soil as well as marine and freshwater sediments where they can be harmful to organisms. In this study, we tested the sensitivity of natural freshwater sediment bacterial communities (by genetic fingerprint) to exposure to microplastics (polyethylene, 2 and 20 mg/g sediment) and microplastics loaded with polycyclic aromatic hydrocarbons (PAHs, phenanthrene and anthracene), using a laboratory-based approach. After two weeks of incubation, the bacterial community composition from an unpolluted river section was altered by high concentrations of microplastics, whereas the community downstream of a wastewater treatment plant remained unchanged. Low microplastic concentrations loaded with phenanthrene or anthracene induced a less pronounced response in the sediment communities compared to the same total amount of phenanthrene or anthracene alone. In addition, biodegradation of the PAHs was reduced. This study shows, that microplastic can affect bacterial community composition in unpolluted freshwater sediments. Moreover, the results indicate that microplastics can serve as a vehicle for hydrophobic pollutants but bioavailability of the latter is reduced by the sorption to microplastics.

Biochar and activated carbon act as promising amendments for promoting the microbial debromination of tetrabromobisphenol A

The increasing occurrence of tetrabromobisphenol A (TBBPA) in the environment is raising questions about its potential environmental health impacts as it has been shown to cause various deleterious effects in humans. The fact that the highest concentrations of TBBPA have been reported in wastewater sludge is concerning as effluent discharge and biosolids land application are likely a route by which TBBPA can be further disbursed to the environment. Our objectives in this study were to evaluate the effect of biochar (BC) and activated carbon (AC) in promoting the biodegradation of TBBPA, and characterize the response of anaerobic sludge microbial communities following amendments. Both carbonaceous amendments were found to promote the reductive debromination of TBBPA. Nearly complete transformation of TBBPA to BPA was observed in the amended reactors ∼20 days earlier than in the control reactors. In particular, the transformation of diBBPA to monoBBPA, which appears to be the rate-limiting step, was accelerated in the presence of either amendment. Overall, microbial taxa responding to the amendments, i.e., 'sensitive responders', represented a small proportion of the community (i.e., 7.2%), and responded positively. However, although both amendments had a similar effect on TBBPA degradation, the taxonomic profile of the sensitive responders differed greatly from one amendment to the other. BC had a taxonomically broader and slightly more pronounced effect than AC. This work suggests that BC and AC show great potential to promote the biodegradation of TBBPA in anaerobic sludge, and their integration into wastewater treatment processes may be helpful for removing TBBPA and possibly other emerging hydrophobic contaminants.

Exploration of biodegradation mechanisms of black carbon-bound nonylphenol in black carbon-amended sediment

The present study aimed to investigate biodegradation mechanisms of black carbon (BC)-bound contaminants in BC-amended sediment when BC was applied to control organic pollution. The single-point Tenax desorption technique was applied to track the species changes of nonylphenol (NP) during biodegradation process in the rice straw carbon (RC)-amended sediment. And the correlation between the biodegradation and desorption of NP was analyzed. Results showed that microorganisms firstly degraded the rapid-desorbing NP (6 h Tenax desorption) in RC-amended sediment. The biodegradation facilitated the desorption of slow-desorbing NP, which was subsequently degraded as well (192 h Tenax desorption). Notably, the final amount of NP degradation was greater than that of NP desorption, indicating that absorbed NP by RC amendment can be degraded by microorganisms. Finally, the residual NP amount in RC-amended sediment was decided by RC content and its physicochemical property. Moreover, the presence of the biofilm was observed by the confocal laser scanning microscope (CLSM) and scanning electron microscope (SEM) so that microorganisms were able to overcome the mass transfer resistance and directly utilized the absorbed NP. Therefore, single-point Tenax desorption alone may not be an adequate basis for the prediction of the bioaccessibility of contaminants to microorganisms or bioremediation potential in BC-amended sediment.

Bioavailability and bioaccessibility of polycyclic aromatic hydrocarbons from (post-pyrolytically treated) biochars

Bioaccessibility data of PAHs from biochar produced under real world conditions is scarce and the influence of feedstock and various post-pyrolysis treatments common in agriculture, such as co-composting or lacto-fermentation to produce silage fodder, on their bioavailability and bioaccessibility has hardly been studied. The total (C_total), and freely dissolved (i.e., bioavailable) concentrations (C_free) of the sum of 16 US EPA PAHs of 43 biochar samples produced and treated in such ways ranged from 0.4 to almost 2000 mg/kg, and from 12 to 81 ng/L, respectively, which resulted in very high biochar-water partition coefficients (4.2 ≤ log K_D ≤ 8.8 L/kg) for individual PAHs. Thirty three samples were incubated in contaminant traps that combined a diffusive carrier and a sorptive sink. Incubations yielded samples only containing desorption-resistant PAHs (C_res). The desorption resistant PAH fraction was dominant, since only eight out of 33 biochar samples showed statistically significant bioaccessible fractions (f_{bioaccessible} = 1 - C_res/C_total). Bioavailability correlated positively with C_total/surface area. Other relationships of bioavailability and -accessibility with the investigated post-pyrolysis processes or elemental composition could not be found. PAH exposure was very limited (low C_free, high C_res) for all samples with low to moderate C_total, whereas higher exposure was determined in some biochars with C_total > 10 mg/kg.

Persistence of polycyclic aromatic hydrocarbons (PAHs) in biochar-amended soil

In the present study the persistence of polycyclic aromatic hydrocarbons (PAHs) applied with biochar to acidic soil (loamy sand) was studied in two and half year field experiment. An experiment was carried out in three experimental plots (15 m(2) each). The biochar was introduced in the following doses: soil without fertilization - control (C-BC00), soil with 30 t ha(-1) (B-BC30) and soil with 45 t ha(-1) (A-BC45) of biochar. Biochar addition to soils resulted in an increase in the PAHs content from 0.239 μg g(-1) in control soil to 0.526 μg g(-1) and 1.310 μg g(-1) in 30 and 45 t ha(-1) biochar-amended soil respectively. However during the experimental period the PAHs content decreased to a level characteristic for the control soil. The highest losses of PAHs were observed during the first 105 days of the experiment. Three and four rings PAHs were the most susceptible for degradation and leaching. Migration of PAHs from 0-10 cm to 10-20 cm soil horizon was also observed.

Impact of activated carbon, biochar and compost on the desorption and mineralization of phenanthrene in soil

Sorption of PAHs to carbonaceous soil amendments reduces their dissolved concentrations, limiting toxicity but also potentially biodegradation. Therefore, the maximum abiotic desorption of freshly sorbed phenanthrene (≤5 mg kg(-1)) was measured in three soils amended with activated carbon (AC), biochar or compost. Total amounts of phenanthrene desorbed were similar between the different soils, but the amendment type had a large influence. Complete desorption was observed in the unamended and compost amended soils, but this reduced for biochar (41% desorbed) and AC (8% desorbed). Cumulative amounts mineralized were 28% for the unamended control, 19% for compost, 13% for biochar and 4% for AC. Therefore, the effects of the amendments in soil in reducing desorption were also reflected in the extents of mineralization. Modeling was used to analyze key processes, indicating that for the AC and charcoal treatments bacterial activity did not limit mineralization, but rather desorption into the dissolved phase.

Identification of soil bacteria able to degrade phenanthrene bound to a hydrophobic sorbent in situ

Efficient bioremediation of PAH-contaminated sites is limited by the hydrophobic character and poor bioavailability of pollutants. In this study, stable isotope probing (SIP) was implemented to track bacteria that can degrade PAHs adsorbed on hydrophobic sorbents. Temperate and tropical soils were incubated with (13)C-labeled phenanthrene, supplied by spiking or coated onto membranes. Phenanthrene mineralization was faster in microcosms with PAH-coated membranes than in microcosms containing spiked soil. Upon incubation with temperate soil, phenanthrene degraders found in the biofilms that formed on coated membranes were mainly identified as Sphingomonadaceae and Actinobacteria. In the tropical soil, uncultured Rhodocyclaceae dominated degraders bound to membranes. Accordingly, ring-hydroxylating dioxygenase sequences recovered from this soil matched PAH-specific dioxygenase genes recently found in Rhodocyclaceae. Hence, our SIP approach allowed the detection of novel degraders, mostly uncultured, which differ from those detected after soil spiking, but might play a key role in the bioremediation of PAH-polluted soils.

Biological responses to activated carbon amendments in sediment remediation

Sorbent amendment with activated carbon (AC) is a novel in situ management strategy for addressing human and ecological health risks posed by hydrophobic organic chemicals (HOCs) in sediments and soils. A large body of literature shows that AC amendments can reduce bioavailability of sediment-associated HOCs by more than 60-90%. Empirically derived biodynamic models can predict bioaccumulation in benthic invertebrates within a factor of 2, allowing for future scenarios under AC amendment to be estimated. Higher AC dose and smaller AC particle size further reduce bioaccumulation of HOCs but may induce stress in some organisms. Adverse ecotoxicity response to AC exposure was observed in one-fifth of 82 tests, including changes in growth, lipid content, behavior, and survival. Negative effects on individual species and benthic communities appear to depend on the characteristics of the sedimentary environment and the AC amendment strategy (e.g., dose and particle size). More research is needed to evaluate reproductive end points, bacterial communities, and plants, and to link species- and community-level responses to amendment. In general, the ability of AC to effectively limit the mobility of HOCs in aquatic environments may outshine potential negative secondary effects, and these outcomes must be held in comparison to traditional remediation approaches.

Evaluation of the application potential of bentonites in phenanthrene bioremediation by characterizing the biofilm community

Application of clay minerals in bioremediation has emerged as a new and promising research field. In this study, the application of calcinated bentonite (CB) and calcinated organobentonite (COB) in phenanthrene (Phe) bioremediation showed high Phe removal efficiency. Clone libraries based on 16S rRNA gene and scanning electronic microscopy showed that diverse taxa of bacteria formed biofilms on both COB and CB particles. The family Sphingomonadaceae was the major group and made up 18% and 23% of the COB and CB biofilm composition, respectively. All and 80% of dioxygenase genes from COB and CB biofilms were closely related to that of Sphingomonas sp., and others matched to that of Comamonas and Mycobacterium. The selective effect of COB on bacterial community was also evident. This study characterized for the first time the bacterial diversity of biofilm community and functional Phe degrading groups on bentonites particles, and provided useful information for future applications.

Comparing the desorption and biodegradation of low concentrations of phenanthrene sorbed to activated carbon, biochar and compost

Carbonaceous soil amendments are applied to contaminated soils and sediments to strongly sorb hydrophobic organic contaminants (HOCs) and reduce their freely dissolved concentrations. This limits biouptake and toxicity, but also biodegradation. To investigate whether HOCs sorbed to such amendments can be degraded at all, the desorption and biodegradation of low concentrations of (14)C-labelled phenanthrene (≤5 μg L(-1)) freshly sorbed to suspensions of the pure soil amendments activated carbon (AC), biochar (charcoal) and compost were compared. Firstly, the maximum abiotic desorption of phenanthrene from soil amendment suspensions in water, minimal salts medium (MSM) or tryptic soy broth (TSB) into a dominating silicone sink were measured. Highest fractions remained sorbed to AC (84±2.3%, 87±4.1%, and 53±1.2% for water, MSM and TSB, respectively), followed by charcoal (35±2.2%, 32±1.7%, and 12±0.3%, respectively) and compost (1.3±0.21%, similar for all media). Secondly, the mineralization of phenanthrene sorbed to AC, charcoal and compost by Sphingomonas sp. 10-1 (DSM 12247) was determined. In contrast to the amounts desorbed, phenanthrene mineralization was similar for all the soil amendments at about 56±11% of the initially applied radioactivity. Furthermore, HPLC analyses showed only minor amounts (<5%) of residual phenanthrene remaining in the suspensions, indicating almost complete biodegradation. Fitting the data to a coupled desorption and biodegradation model revealed that desorption did not limit biodegradation for any of the amendments, and that degradation could proceed due to the high numbers of bacteria and/or the production of biosurfactants or biofilms. Therefore, reduced desorption of phenanthrene from AC or charcoal did not inhibit its biodegradation, which implies that under the experimental conditions these amendments can reduce freely dissolved concentration without hindering biodegradation. In contrast, phenanthrene sorbed to compost was fully desorbed and biodegraded.

Enhancing atrazine biodegradation by Pseudomonas sp. strain ADP adsorption to Layered Double Hydroxide bionanocomposites

To mimic the role of hydroxide minerals and their humic complex derivatives on the biodegradability of pesticides in soils, synthetic Mg(R)Al Layered Double Hydroxides (LDH) and Mg(R)Al modified by Humic substances (LDH-HA) were prepared for various R values (2, 3 and 4) and fully characterized. Adsorption properties of LDH and LDH-HA toward Pseudomonas sp. strain ADP were evaluated. The adsorption kinetics were very fast (<5 min to reach equilibrium). The adsorption capacities were greater than previously reported (13.5×10(11), 41×10(11) and 45.5×10(11) cells/gLDH for Mg(2)Al, Mg(3)Al and Mg(4)Al, respectively) and varied with both surface charge and textural properties. Surface modification by HA reduced the adsorption capacities of cells by 2-6-fold. Biodegradation kinetics of atrazine by Pseudomonas sp. adsorbed on both LDHs and LDH-HA complexes were measured for various solid/liquid ratios and adsorbed cell amounts. Biodegradation activity of bacterial cells was strongly boosted after adsorption on LDHs, the effect depending on the quantity and properties of the LDH matrix. The maximum biodegradation rate was obtained in the case of a 100 mg/mL Mg(2)Al LDH suspension (26 times higher than that obtained with cells alone).

Biodegradation of pyrene in sand, silt and clay fractions of sediment

Microbial degradation is the dominant pathway for natural attenuation of PAHs in environmental compartments such as sediments, which in turn depends on the bioavailability of PAHs. The bioavailability of PAHs has seldom been studied at the sediment particle size scale. We evaluated biodegradation of pyrene by Mycobacterium vanbaalenii PYR-1 as a function of sediment particle sizes, and investigated the relationship between the rate of degradation on sand, silt and clay particles with their individual desorption kinetics measured with the Tenax extraction method. Regression analysis showed that the total organic carbon (TOC), black carbon (BC), and specific surface area (SSA) of the specific particle size fractions, instead of the particle size scale itself, were closely related (P < 0.01) with the mineralization rate. While the fraction in the rapid desorption pool (F_rapid) ranged from 0.11 to 0.38 for the whole sediments and different size groups, the fractions mineralized after 336-h incubation (0.52 to 0.72) greatly surpassed the F_rapid values, suggesting utilization of pyrene in the slow desorption pool (F_slow). A biodegradation model was modified by imbedding a two-phase desorption relationship describing sequential Tenax extractions. Model analysis showed that pyrene sorbed on silt and clay aggregates was directly utilized by the degrading bacteria. The enhanced bioavailability may be attributed to the higher chemical concentration, higher TOC or larger SSA in the silt and clay fractions, which appeared to overcome the reduced bioavailability of pyrene due to sorption, making pyrene on the silt and clay particles readily available to degrading microbes. This conjecture merits further investigation.

Analysis of the adhesion of Pseudomonas putida NCIB 9816-4 to a silica gel as a model soil using extended DLVO theory

The extended Derjaguin-Landau-Verwey-Overbeek (DLVO) theory was applied to explain the hydrophobic interaction-mediated adhesion of Pseudomonas putida NCIB 9816-4 to soil. Soil particles are heterogeneous, and it is difficult to define consistent physico-chemical properties such as a contact angle and zeta potential. Hence, a silica gel and a silanized (3-aminopropyltriethoxysilane-coated) silica gel, which showed greater hydrophobicity than the unmodified silica gel, were used as model soils. Gibbs energies for the cell adhesion to the silica gels were calculated with the physico-chemical properties of the microbes and the silica gels and then plotted as a function of the separation distance. The extended DLVO theory successfully explained that the adhesion of P. putida NCIB 9816-4 to the silica gel, a model soil, was primarily caused by hydrophobic interaction.

Atrazine biodegradation modulated by clays and clay/humic acid complexes

The fate of pesticides in the environment is strongly related to the soil sorption processes that control not only their transfer but also their bioavailability. Cationic (Ca-bentonite) and anionic (Layered Double Hydroxide) clays behave towards the ionisable pesticide atrazine (AT) sorption with opposite tendencies: a noticeable sorption capacity for the first whereas the highly hydrophilic LDH showed no interactions with AT. These clays were modified with different humic acid (HA) contents. HA sorbed on the clay surface and increased AT interactions. The sorption effect on AT biodegradation and on its metabolite formation was studied with Pseudomonas sp. ADP. The biodegradation rate was greatly modulated by the material's sorption capacity and was clearly limited by the desorption rate. More surprisingly, it increased dramatically with LDH. Adsorption of bacterial cells on clay particles facilitates the degradation of non-sorbed chemical, and should be considered for predicting pesticide fate in the environment.

Effects of humic acid on solubility and biodegradation of polycyclic aromatic hydrocarbons in liquid media and mangrove sediment slurries

The effects of humic acid (HA) on the solubility and biodegradability of mixed polycyclic aromatic hydrocarbons (PAHs) (phenanthrene (PHE), pyrene (PYR), and benzo[a]pyrene (BAP)) in liquid media and mangrove sediment slurries were investigated. The addition of HA to the liquid media (0-1.6%, w/v) significantly enhanced the solubility of all mixed three PAHs and the biodegradation of PHE and PYR (but not BAP) by MP-PYR1, a PYR-degrading bacterium isolated from mangrove sediment. Amendment with 0.2% HA to the sediment slurries exhibited little enhancement in either PAH solubility or degradation. Although amendment with 1.6% HA increased the aqueous phase PAHs in the sediment slurries, it did not have any significant enhancement effect on biodegradation. Natural attenuation of PHE in sediment was evident, with 91% degraded after 7 d. The highest biodegradation of PHE and PYR was found in the sediment slurries inoculated with MP-PYR1, and the degradation efficiency was even higher than that in the liquid media (99% vs. 85% for PHE and 97% vs. 63% for PYR). The degradation capacity of MP-PYR1 for both PHE and PYR was comparable when it was inoculated to the sterile and non-sterile sediment slurries, implying that the inoculum was able to compete with the indigenous microorganisms. The reason why BAP was not degraded in either liquid media or mangrove sediment slurries was more likely due to the lack of degraders than its low solubility. These results suggested that the success of PAH degradation did not rely solely on the amounts of soluble PAHs which could be enhanced by the HA amendment; the presence of a suitable degrader was also important.