Effect of multiple metal resistant bacteria from contaminated lake sediments on metal accumulation and plant growth

Phosphate-solubilizing bacteria improve the antioxidant enzyme activity of Potamogeton crispus L. and enhance the remediation effect on Cd-contaminated sediment

Phosphorus-solubilizing bacteria (PSB) assisted phytoremediation of cadmium (Cd) pollution is an effective method, but the mechanism of PSB-enhanced in-situ remediation of Cd contaminated sediment by submerged plants is still rare. In this study, PSB (Leclercia adecarboxylata L1-5) was inoculated in the rhizosphere of Potamogeton crispus L. (P. crispus) to explore the effect of PSB on phytoremediation. The results showed that the inoculation of PSB effectively improved the Cd extraction by P. crispus under different Cd pollution and the Cd content in the aboveground and underground parts of P. crispus all increased. The μ-XRF images showed that most of the Cd was enriched in the roots of P. crispus. PSB especially showed positive effects on root development and chlorophyll synthesis. The root length of P. crispus increased by 51.7 %, 80.5 % and 74.2 % under different Cd pollution, and the Ca/Cb increased by 38.9 %, 15.2 % and 8.6 %, respectively. Furthermore, PSB enhanced the tolerance of P. crispus to Cd. The contents of soluble protein, MDA and H2O2 in 5 mg·kg-1 and 7 mg·kg-1 Cd content groups were decreased and the activities of antioxidant enzymes were increased after adding PSB. The results showed that the application of PSB was beneficial to the in-situ remediation of submerged plants.

Potato (Solanum tuberosum L.) cultivars physiological, biochemical performance and yield parameters response to acid mine water irrigation and soil physiochemical properties

This paper aimed to analyse the potato cultivar's response to physiological, biochemical performance, yield parameters and soil physiochemical properties when subjected to quicklime (un)treated acid mine drainage (AMD) irrigation. A randomized design experiment was conducted with five water treatment levels: TW1; TW2; TW3; TW4 to TW5 replicated four times. The results showed that the quicklime treatment increased the pH of the AMD water, reduced the concentration of EC, NO3-, SO42- and ameliorated heavy metals. However, unsafe levels of heavy metals above the maximum permissible (WHO/FAO) levels were found in Pb, Mg and Mo for water (TW4 and TW5), while As, Cd and Cr for soils (ST4 and ST5) respectively. For potato tubers (TT4 and TT5) concentrations of As, Cd, Cr, and Pb were above the maximum levels. Stomatal conductance, chlorophyll content and yield parameters responded positively by increasing significantly on TW4 and TW5 treatments, but negatively (reduced) towards TW2 and TW3 treatments. A higher bioaccumulation factor was obtained for Zn ˃ Cu ˃ Mg ˃ Pb ˃ Mn, which was an indication of the contamination status of soil, with Zn being more concentrated than other metals. The findings indicate that quicklime-treated AMD is usable for potato irrigation with regular monitoring of heavy metal levels and strict observation of water reuse protocols. The use of this large source of ameliorated (AMD) water will go a long way in improving food security in South Africa and/or in countries where agriculture production is around mining areas.

Research progress on the role of biofilm in heavy metals adsorption-desorption characteristics of microplastics: A review

Microplastics (MPs) have been found to be widely distributed in aquatic environments, where they will interact with toxic heavy metals and result in more serious adverse effects on the aquatic environments and organisms. However, after entering the aquatic environments, MPs are quickly covered by biofilms, which significantly modify MPs properties and relevant heavy metals adsorption-desorption characteristics In order to better understand the adsorption behavior of heavy metals on biofilm developed MPs (BMPs), we comprehensively reviewed representative studies in this area. First, we summarized the formation process of biofilms on MPs. Subsequently, we reviewed the current understanding on the influence of biofilm formation on the properties of MPs and discussed the metal adsorption-desorption characteristics of MPs affected by these changes. Finally, based on the systematic literature review, some future research needs and strategies were proposed to further understand the interactions between MPs and heavy metals.

Biochemical, Catabolic, and PGP Activity of Microbial Communities and Bacterial Strains from the Root Zone of Baccharis linearis in a Mediterranean Mine Tailing

The management of mine tailings (MT) is commonly workload heavy, intrusive, and expensive. Phytostabilization offers a promising approach for MT management; however, it poses challenges due to the unfavorable physicochemical properties of these wastes. Nevertheless, native microorganisms capable of supporting plant growth and development could enhance the efficacy of phytostabilization. This study assesses the biological activity of microbial communities from the root zone of Baccharis linearis, which is naturally present in MT, in order to evaluate their biotechnological potential for phytostabilization. The root zone and bulk samples were collected from B. linearis plants located within a MT in the Mediterranean zone of Chile. Enzyme activities related to the cycling of C, N, and P were assessed. The community-level physiological profile was evaluated using the MicroRespTM system. Bacterial plant growth-promoting (PGP) traits and colony forming units (CFU) were evaluated through qualitative and microbiological methods, respectively. CFU, enzyme activities, and CLPP were higher in the root zone compared with the bulk samples. Five bacterial strains from the root zone exhibited PGP traits such as P solubilization and N acquisition, among others. The presence of microbial communities in the root zone of B. linearis with PGP traits suggests their potential to enhance the ecological management of MT through phytostabilization programs.

Microbe-Plant Interactions Targeting Metal Stress: New Dimensions for Bioremediation Applications

In the age of industrialization, numerous non-biodegradable pollutants like plastics, HMs, polychlorinated biphenyls, and various agrochemicals are a serious concern. These harmful toxic compounds pose a serious threat to food security because they enter the food chain through agricultural land and water. Physical and chemical techniques are used to remove HMs from contaminated soil. Microbial-metal interaction, a novel but underutilized strategy, might be used to lessen the stress caused by metals on plants. For reclaiming areas with high levels of heavy metal contamination, bioremediation is effective and environmentally friendly. In this study, the mechanism of action of endophytic bacteria that promote plant growth and survival in polluted soils-known as heavy metal-tolerant plant growth-promoting (HMT-PGP) microorganisms-and their function in the control of plant metal stress are examined. Numerous bacterial species, such as Arthrobacter, Bacillus, Burkholderia, Pseudomonas, and Stenotrophomonas, as well as a few fungi, such as Mucor, Talaromyces, Trichoderma, and Archaea, such as Natrialba and Haloferax, have also been identified as potent bioresources for biological clean-up. In this study, we additionally emphasize the role of plant growth-promoting bacteria (PGPB) in supporting the economical and environmentally friendly bioremediation of heavy hazardous metals. This study also emphasizes future potential and constraints, integrated metabolomics approaches, and the use of nanoparticles in microbial bioremediation for HMs.

Effects of intercropping on safe agricultural production and phytoremediation of heavy metal-contaminated soils

Intercropping with hyperaccumulators is believed to be an important and efficient way to achieve simultaneous safe agricultural production and phytoremediation of polluted soils. However, some studies have suggested that this technique might facilitate the uptake of heavy metals by crops. To investigate the effects of intercropping on the heavy metal contents of plants and soil, data from 135 global studies were collected and analyzed by meta-analysis. The results showed that intercropping could significantly reduce the contents of heavy metals in the main plants and soils. Plant species was the main factor that affected plant and soil metal contents in the intercropping system, and the heavy metal content could be significantly reduced when members of the Poaceae and Crassulaceae were used as main plants or when legumes were used as intercropped plants. Among all the intercropped plants, the best one for removing heavy metals from the soil was a Crassulaceae hyperaccumulator. These results not only highlight the main factors affecting intercropping systems but also provide reliable reference information for the practice of safe agricultural production coupled with phytoremediation of heavy metal-contaminated farmland.

Mirror proteorhodopsins

Proteorhodopsins (PRs), bacterial light-driven outward proton pumps comprise the first discovered and largest family of rhodopsins, they play a significant role in life on the Earth. A big remaining mystery was that up-to-date there was no described bacterial rhodopsins pumping protons at acidic pH despite the fact that bacteria live in different pH environment. Here we describe conceptually new bacterial rhodopsins which are operating as outward proton pumps at acidic pH. A comprehensive function-structure study of a representative of a new clade of proton pumping rhodopsins which we name "mirror proteorhodopsins", from Sphingomonas paucimobilis (SpaR) shows cavity/gate architecture of the proton translocation pathway rather resembling channelrhodopsins than the known rhodopsin proton pumps. Another unique property of mirror proteorhodopsins is that proton pumping is inhibited by a millimolar concentration of zinc. We also show that mirror proteorhodopsins are extensively represented in opportunistic multidrug resistant human pathogens, plant growth-promoting and zinc solubilizing bacteria. They may be of optogenetic interest.

Bacteria isolated from e-waste soil enhance plant growth and mobilize trace metals in e-waste-amended soils

Worldwide accumulation of e-waste poses a major threat to environmental health. However, printed circuit boards contain precious metals, such as gold, and silver, and also contain micronutrient metal elements, such as Fe, Cu, Zn, etc. Therefore, the present study investigated the effects of e-waste-tolerant bacteria (ETB) on promoting plant growth in e-waste-amended soils and mobilizing trace metals into the plants. For this, a total of 18 bacteria were isolated and screened for e-waste tolerance. Screening for plant growth-promoting properties revealed the production of indole-3-acetic acid-like compounds, siderophore production, and phosphate solubilization. Identification based on 16S rRNA gene sequencing revealed that all isolates belonged to the genus Bacillus. Pot experiment revealed that the treated seeds showed the enhancement of chili plants root growth ranging from 106.55 to 208.07% compared to control plants (e-waste) and 0.0 to 47.90% (without e-waste). A similar enhancement was also observed in the shoot length, and size of the leaf compared to e-waste amended control plants. Inoculation of ETB significantly (p < 0.05) mobilized Fe, Zn, Cu, and Ni into chili plants. The identified ETB could be used to mitigate the toxicity posed by the e-waste, enhancing plant growth and mobilization of micronutrients into plants from e-waste.

Native Heavy Metal-Tolerant Plant Growth Promoting Rhizobacteria Improves Sulla spinosissima (L.) Growth in Post-Mining Contaminated Soils

The potential of rhizobacteria in assisting plants used in the phytostabilization or re-vegetation of soils contaminated by heavy metals is gaining interest all around the world. In this context, six rhizobacterial strains isolated from highly heavy metal-contaminated soils situated in abandoned mining sites around the Oujda region (Morocco) were tested with Sulla spinosissima (L.), a native leguminous plant expanding in this area. The strains used were multi-resistant to heavy metals and possessed multiple plant growth-promoting traits. Potential beneficial effects of the strains were also evaluated in planta by measuring various growth and physiological parameters of inoculated Sulla plants grown in sterilized sand. Inoculation with the Rhodococcus qingshengii strain LMR340 boosted plant biomass (39% to 83% increase compared to uninoculated plants), chlorophyll and carotenoid content (up to 29%), and antioxidant enzyme activities (15% to 80% increase). Based on these interesting findings, selected strains were inoculated into plants growing in a heavy metal, multi-polluted, and poor soil. Under these conditions, non-inoculated plants and those inoculated with the strain LMR250 were unable to grow, while the other five bacterial inoculants restored plant growth. The best performing strain, Pseudarthrobacter oxydans LMR291, could be considered as a good biofertilizer and/or biostimulant candidate to be used for promoting the growth of selected plants in re-vegetation and/or phytostabilization programs of degraded and contaminated soils.

Metallophores production by bacteria isolated from heavy metal-contaminated soil and sediment at Lerma-Chapala Basin

Environmental pollution as a result of heavy metals (HMs) is a worldwide problem and the implementation of eco-friendly remediation technologies is thus required. Metallophores, low molecular weight compounds, could have important biotechnological applications in the fields of agriculture, medicine, and bioremediation. This study aimed to isolate HM-resistant bacteria from soils and sediments of the Lerma-Chapala Basin and evaluated their abilities to produce metallophores and to promote plant growth. Bacteria from the Lerma-Chapala Basin produced metallophores for all the tested metal ions, presented a greater production of As³⁺ metallophores, and showed high HM resistance especially to Zn²⁺, As⁵⁺, and Ni²⁺. A total of 320 bacteria were isolated with 170 strains showing siderophores synthesis. Members of the Delftia and Pseudomonas genera showed above 92 percent siderophore units (psu) during siderophores production and hydroxamate proved to be the most common functional group among the analyzed siderophores. Our results provided evidence that Lerma-Chapala Basin bacteria and their metallophores could potentially be employed in bioremediation processes or may even have potential for applications in other biotechnological fields.

Occurrences of 2-methylisoborneol and geosmin -degrading bacteria in a eutrophic reservoir and the role of cell-bound versus dissolved fractions

As taste-and-odor outbreaks are common in surface waters worldwide, extensive studies have focused on the identification of microorganisms involved in the production of 2-methylisoborneol (MIB) and geosmin (GSM). However, fewer studies have tried to identify potential degraders in natural environments. Eagle Creek Reservoir, a temperate and eutrophic water body, experienced two major seasonal odorous outbreaks in 2013 with maximal concentrations of 99.1 (MIB) and 77.3 ng L^-1 (GSM). Fractionation analyses of the odorous compounds showed that MIB was found more frequently in the dissolved fraction while GSM was mostly cell-bound. This difference likely impacts taste-and-odor (T&O) compound susceptibility to biodegradation by bacteria. Spearman relationships of epilimnetic samples collected between spring and early fall linked dissolved MIB occurrences to higher abundances of Bacteroidetes like Flavobacterium resistens, F. granuli, F. saliperosum (p < 0.001), F. kamogawaensis (p < 0.01) capable of MIB degradation. Occurrences of cell-bound GSM were correlated to two α-Proteobacteria Novosphingobium hassiacum (p < 0.001) and Sphingomonas oligophenolica (p < 0.01), both identified as potential degraders of GSM. The roles of Pseudomonas and Bacillus were ambiguous, and these genera might have been involved in both compound biodegradations (p < 0.05).

Rhizosphere Bacteria in Plant Growth Promotion, Biocontrol, and Bioremediation of Contaminated Sites: A Comprehensive Review of Effects and Mechanisms

Agriculture in the 21st century is facing multiple challenges, such as those related to soil fertility, climatic fluctuations, environmental degradation, urbanization, and the increase in food demand for the increasing world population. In the meanwhile, the scientific community is facing key challenges in increasing crop production from the existing land base. In this regard, traditional farming has witnessed enhanced per acre crop yields due to irregular and injudicious use of agrochemicals, including pesticides and synthetic fertilizers, but at a substantial environmental cost. Another major concern in modern agriculture is that crop pests are developing pesticide resistance. Therefore, the future of sustainable crop production requires the use of alternative strategies that can enhance crop yields in an environmentally sound manner. The application of rhizobacteria, specifically, plant growth-promoting rhizobacteria (PGPR), as an alternative to chemical pesticides has gained much attention from the scientific community. These rhizobacteria harbor a number of mechanisms through which they promote plant growth, control plant pests, and induce resistance to various abiotic stresses. This review presents a comprehensive overview of the mechanisms of rhizobacteria involved in plant growth promotion, biocontrol of pests, and bioremediation of contaminated soils. It also focuses on the effects of PGPR inoculation on plant growth survival under environmental stress. Furthermore, the pros and cons of rhizobacterial application along with future directions for the sustainable use of rhizobacteria in agriculture are discussed in depth.

Microbial Community Diversity Dynamics in Acid Mine Drainage and Acid Mine Drainage-Polluted Soils: Implication on Mining Water Irrigation Agricultural Sustainability

Environmental degradation related to mining-generated acid mine drainage (AMD) is a major global concern, contaminating surface and groundwater sources, including agricultural land. In the last two decades, many developing countries are expanding agricultural productivity in mine-impacted soils to meet food demand for their rapidly growing population. Further, the practice of AMD water (treated or untreated) irrigated agriculture is on the increase, particularly in water-stressed nations around the world. For sustainable agricultural production systems, optimal microbial diversity, and functioning is critical for soil health and plant productivity. Thus, this review presents up-to-date knowledge on the microbial structure and functional dynamics of AMD habitats and AMD-impacted agricultural soils. The long-term effects of AMD water such as soil acidification, heavy metals (HM), iron and sulfate pollution, greatly reduces microbial biomass, richness, and diversity, impairing soil health plant growth and productivity, and impacts food safety negatively. Despite these drawbacks, AMD-impacted habitats are unique ecological niches for novel acidophilic, HM, and sulfate-adapted microbial phylotypes that might be beneficial to optimal plant growth and productivity and bioremediation of polluted agricultural soils. This review has also highlighted the impact active and passive treatment technologies on AMD microbial diversity, further extending the discussion on the interrelated microbial diversity, and beneficial functions such as metal bioremediation, acidity neutralization, symbiotic rhizomicrobiome assembly, and plant growth promotion, sulfates/iron reduction, and biogeochemical N and C recycling under AMD-impacted environment. The significance of sulfur-reducing bacteria (SRB), iron-oxidizing bacteria (FeOB), and plant growth promoting rhizobacteria (PGPRs) as key players in many passive and active systems dedicated to bioremediation and microbe-assisted phytoremediation is also elucidated and discussed. Finally, new perspectives on the need for future studies, integrating meta-omics and process engineering on AMD-impacted microbiomes, key to designing and optimizing of robust active and passive bioremediation of AMD-water before application to agricultural production is proposed.

Synergistic effect of ACC deaminase producing Pseudomonas sp. TR15a and siderophore producing Bacillus aerophilus TR15c for enhanced growth and copper accumulation in Helianthus annuus L

Copper (Cu) is an essential element, however it's excess into the environment causes detrimental effect on plant and risks for public health. Four Cu and drought tolerant 1-aminocyclopropane-1-carboxylate (ACC) deaminase producing rhizobacteria were isolated from the roots of Trifolium repens L. growing on Cu smelter contaminated soils, characterized and identified based on 16S rRNA gene sequencing. A consortium of high ACC deaminase (53.74 μM α-ketobutyrate mg^-1 protein h^-1) producing bacteria Pseudomonas sp. strain TR15a + siderophore producing Bacillus aerophilus strain TR15c significantly (p < 0.05) produced better results for multiple-metal tolerance including Cu (1750 mg kg^-1), antibiotic resistance (ampicillin, kanamycin, chloramphenicol, penicillin, tetracycline, and streptomycin) and plant growth promoting attributes (phosphate solubilization: 315 mg L^-1, indole-3-acetic acid (IAA) production: 8 mg L^-1, ammonia and hydrogen cyanide production) as compared to individual isolates. Pot scale experiment (enriched with 100 mg Cu kg^-1) showed inoculation of Helianthus annuus seeds with consortium of TR15a + TR15c had significantly (p < 0.05) improved seed germination by 32%, total dry biomass by 64%, root Cu by 47% and shoot Cu by 75% as compared to uninoculated control whereas 0.2-7 fold higher results were observed for above stated parameters as compared to four individual isolates studied. The result suggests consortium of ACC deaminase producing Pseudomonas sp. TR15a and siderophore producing B. aerophilus TR15c could play a vital role in enhanced Cu uptake and improvement of biomass and may provide a better alternative for decontamination of Cu contaminated natural ecosystem than individual isolates.

Bacteria Isolated from Wastewater Irrigated Agricultural Soils Adapt to Heavy Metal Toxicity While Maintaining Their Plant Growth Promoting Traits

The present study explored the plant growth promotion and bioremediation potential of bacteria inhabiting wastewater irrigated agricultural soils. Thirty out of 75 bacterial isolates (40%), 29/75 (39%) and 28/75 (37%) solubilized Zn, K and PO4 during plate essays respectively. Fifty-six percent of the isolates produced siderophores, while 30% released protease in vitro. Seventy-four percent of bacteria resisted Pb, Ni and Cd at various concentrations added to the culture media plates. Sixteen out of 75 (26%) isolates were able to fix N in Nbf medium. Among these 16 N fixers, N fixing nifH, nifD and nifK genes was detected through PCR in 8, 7 and 1 strain respectively using gene specific primers designed in the study with Enterobacter sp. having all three (nifHKD) genes. Isolated bacteria showed resemblance to diverse genera such as Bacillus, Pseudomonas, Enterobacter, Citrobacter, Acinetobacter, Serratia, Klebsiella and Enterococcus based on 16S rRNA gene sequence analysis. In addition to showing the best mineral solubilization and metal resistance potential, Citrobacter sp. and Enterobacter sp. also removed 87%, 79% and 43% and 86%, 78% and 51% of Ni, Cd and Pb, respectively, from aqueous solution. These potent bacteria may be exploited both for bioremediation and biofertilization of wastewater irrigated soils leading to sustainable agriculture.

Co-occurrence and patterns of phosphate solubilizing, salt and metal tolerant and antibiotic-resistant bacteria in diverse soils

Soil is a treasure chest for beneficial bacteria with applications in diverse fields, which include agriculture, rhizoremediation, and medicine. Metagenomic analysis of four soil samples identified Proteobacteria as the dominant phylum (32-52%) followed by the phylum Acidobacteria (11-21% in three out of four soils). Bacteria that were prevalent at the highest level belong to the genus Kaistobacter (8-19%). PICRUSt analysis predicted KEGG functional pathways associated with the metagenomes of the four soils. The identified pathways could be attributed to metal tolerance, antibiotic resistance and plant growth promotion. The prevalence of phosphate solubilizing bacteria (PSB) was investigated in four soil samples, ranging from 26 to 59% of the total culturable bacteria. The abundance of salt-tolerant and metal-tolerant bacteria showed considerable variation ranging from 1 to 62% and 4-69%, respectively. In comparison, the soil with the maximum prevalence of temperature-tolerant and antibiotic-resistant bacteria was close 30%. In this study, the common pattern observed was that PSB were the most abundant in all types of soils compared to other traits. Conversely, most of the isolates, which are salt-tolerant, copper-tolerant, and ampicillin-resistant, showed phosphate solubilization activity. The sequencing of the partial 16S-rRNA gene revealed that PSB belonged to Bacillus genera.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s13205-021-02904-7.

Investigation of arsenic-resistant, arsenite-oxidizing bacteria for plant growth promoting traits isolated from arsenic contaminated soils

The problem of arsenic (As) pollution being severe warrants opting for low-cost microbial remediation strategies. The present study of identifying suitable bacterial strains led to the isolation of eleven As-tolerant strains from the As-contaminated rhizosphere soils of West Bengal, India. They were found to oxidize/reduce 55-31.6% of 5 mM As(III) and 73-37.6% of 5 mM As(V) within 12 h. The four isolates (BcAl-1, JN 73, LAR-2, and AR-30) had a high level of As(III) oxidase activity along with a higher level of As(V) and As(III) resistance. The agar diffusion assay of the isolates further confirmed their ability to endure As stress. The presence of aoxB gene was observed in these four As(III) oxidizing isolates. Evaluation of plant growth-promoting characteristics revealed that BcAl-1 (Burkholderia cepacia), JN 73 (Burkholderia metallica), AR-30 (Burkholderia cenocepacia), and LAR-2 (Burkholderia sp.) had significant plant growth-promoting characteristics (PGP), including the ability to solubilize phosphate, siderophore production, indole acetic acid-like molecules production, ACC deaminase production, and nodule formation under As stressed condition. BcAl-1 and JN 73 emerged as the most promising traits in As removal as well as plant growth promotion.

Bioaugmentation with copper tolerant endophyte Pseudomonas lurida strain EOO26 for improved plant growth and copper phytoremediation by Helianthus annuus

Organic fertilizers became a better alternative to chemical fertilizers in modern agricultural practices however, contamination of copper (Cu) from organic fertilizer is still a major concern for the globe. Plant growth promoting (PGP) microorganisms showed their efficiency to combat with this problem and thus Cu tolerant PGP endophytes from roots of Odontarrhena obovata (Alyssum obovatum) growing on Cu smelter contaminated serpentine soil were explored in present study. Out of twenty-four isolates, Pseudomonas lurida strain EOO26 identified by 16s rRNA gene sequencing was selected to check its efficacy for Cu-remediation. The strain EOO26 showed multi-metal tolerance, drought resistance and exhibited PGP attributes such as 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase, siderophore and ammonia production. Significant production of indole-3-acetic acid and phosphate-solubilization under different Cu concentration (0-100 mg L^-1) at varying pH (5.0-8.0) suggests potentiality of this strain to work effectively under wide range of abiotic stress conditions. Plant growth experiment (pH 6.8 ± 0.3) in copper spiked soil suggested a significant increase in length and dry weight of root and shoot of sunflower (Helianthus annuus) after inoculation with strain EOO26. Plants inoculated with strain EOO26 resulted in increase in Cu uptake by 8.6-fold for roots and 1.9-fold for leaves than uninoculated plants. The total plant uptake in inoculated Cu treatment was 2.6-fold higher than uninoculated one, which is much higher than the previously reported Cu accumulating plants. The excellent adaptation abilities and promising metal removal efficiency strongly indicate superiority of strain EOO26 for phytoremediation of Cu-contamination and may work effectively for Cu removal from contaminated soils.

Insights into the effects of heavy metal pressure driven by long-term treated wastewater irrigation on bacterial communities and nitrogen-transforming genes along vertical soil profiles

Irrigation with treated wastewater (TWW) influences soil ecological function due to the accumulation of heavy metals (HMs) and nutrients in soils. However, the interaction between HMs and microbial processes in TWW-irrigated soil has not been fully explored. We investigated the effect of HMs on bacterial communities and nitrogen-transforming (N-transforming) genes along vertical soil profiles irrigated with domestic TWW (DTWW) and industrial TWW (ITWW) for more than 30 years. Results indicate that long-term TWW irrigation reshaped bacterial community structure and composition. Irrigation with ITWW led to increased accumulation of Cd, Cr, Cu, Pb, Zn, and Ni in soils than DTWW. Accumulation of inorganic N, soil organic carbon, and HMs in topsoil irrigated with ITWW contributed to the activities of Micrococcaceae. The effect of the activation of nutrient factors on Bacillus, which was the dominant species in DTWW-irrigated soils, was greater than that of HMs. HM pressure driven by ITWW irrigation changed the vertical distribution of N-transforming functional genes, increasing the abundance of amoA gene and decreasing that of nifH through soil depth. ITWW irrigation enhanced the denitrification capacity in topsoil; ammonia-oxidizing capacity in deeper soil was increased after long-term irrigation with DTWW and ITWW, suggesting a potential risk of nitrogen loss.

Effect of zinc-resistant Lysinibacillus species inoculation on growth, physiological properties, and zinc uptake in maize (Zea mays L.)

Soil contamination by heavy metals is one of the major abiotic stresses that cause retarded plant growth and low productivity. Among the heavy metals, excessive accumulations of zinc (Zn) cause toxicity to plants. The toxicity caused by Zn could be managed by application of Zn-tolerant plant growth-promoting (PGP) bacteria. In this study, five Zn-tolerant bacteria (100-400 mg^-1 Zn resistant) were selected and identified as Lysinibacillus spp. based on 16S rRNA gene sequencing. The PGP properties of the Lysinibacillus spp. showed the production of indole acetic acid (60.0-84.0 μg/ml) and siderophore, as well as solubilization of potassium. Furthermore, the isolates were evaluated under greenhouse condition with 2 g kg^-1 Zn stress and without Zn stress along with control on Zea mays. The results showed that Lysinibacillus spp. coated seeds enhanced plant growth attributes and biomass yield in both conditions compared with control plants. The enhancement of root growth ranged from 49.2 to 148.6% and shoot length from 83.3 to 111.7% under Zn-stressed soils. Also, the inoculated seedlings substantially enhanced chlorophyll a and b, proline, total phenol, and ascorbic acid. The uptake of Zn by maize root ranged from 31.5 to 210.0% compared with control plants. Therefore, this study suggested that the tested Zn-tolerant Lysinibacillus spp. may be used for cultivation of Z. mays in Zn-contaminated agricultural lands.

Evaluation of interaction among indigenous rhizobacteria and Vigna unguiculata on remediation of metal-containing abandoned magnesite mine tailing

Abandoned magnesite mine heap causing pollution to nearby farmland and water reservoir. Thus the intention of this research was to screening metal mobilizing and absorbing bacteria from the rhizosphere section of V. unguiculata from farmland nearby to magnesite mine. Further, studied their stimulus effect on growth, biomass, and phytoextraction prospective of V unguiculata in mine tailing. The results of the physicochemical properties of mine tailing shows that four metals (Pb, Mn, Cd, and Zn) were crossing the permissible limit. Out of 27 isolates, 2 isolates (MMS15 and MMS17) were identified with maximum metal tolerance for up to 700 mg L^-1 (MIC) and metal mobilization (Pb 5.5 and 5.87, Mn 6.6 and 4.88, Cd 1.99 and 2.59, and Zn 6.55 and 6.94 mg kg^-1) and biosorption efficiency as Pb 3.74 and 3.74, Mn 4.9 and 4.7, Cd 2.41 and 3.96, and Zn 4.3 and 4.9 mg g^-1. These two strains were identified as members of B. cereus and Kosakonia sp. using 16S rRNA technique and labelled strains NDRMN001 and MGR1, respectively. The Kosakonia sp. MGR1 effectively fixes the nitrogen in the rate of 81.94% and B. cereus NDRMN001 solubilizes 69.98 ± 2.31 mg L^-1 of soluble phosphate. The experimental group's study results show that the group C (Kosakonia sp. MGR1 and B. cereus NDRMN001) has effectively stimulate the growth, biomass, and phytoextraction potential of V. unguiculata. The results conclude that the optimistic interaction between these two bacteria could be more significant to minimize the metal pollution in magnesite mine tailing.

Brevundimonas diminuta MYS6 associated Helianthus annuus L. for enhanced copper phytoremediation

Natural occurring metal-tolerant microbial population have replaced conventional expensive metal remediation approach since the last few years. The present study focuses on investigating the potential of a copper-tolerant plant growth promoting rhizobacterial strain Brevundimonas diminuta MYS6 for Cu bioremediation, plant growth promotion and Cu uptake in Helianthus annuus L. Box-Behnken Design of response surface methodology optimized the influencing parameters such as pH, temperature and Cu concentration. At optimized conditions of pH (5), temperature (32.5 °C) and Cu concentration (250 mg/L), the rhizobacteria followed a sigmoid growth curve pattern with maximum Cu removal of 94.8% in the stationary phase of growth. Cu exposed Brevundimonas diminuta MYS6 produced increased EPS (18.6%), indicating their role in internal defence against Cu stress. The FTIR analysis suggested the role of carboxylic acids, alcohols and aliphatic amine groups in Cu bioremoval. Furthermore, the results of pot experiments conducted with Helianthus annuus L. var. CO4 and Brevundimonas diminuta MYS6 showed enhanced plant growth and Cu uptake. The rhizobacteria increased root and shoot length, fresh and dry plant biomass and leaf chlorophyll by 1.5, 1.7, 9.9, 15.8 and 2.1 fold. The plant biomass mediate enhanced Cu uptake in roots and shoots was found to be 2.98 and 4.1 folds higher when compared to non-inoculated treatment. Henceforth the results of the study evidence the rhizobacterial strain Brevundimonas diminuta MYS6 as an efficient bio-inoculant for copper remediation.

Microbe-EDTA mediated approach in the phytoremediation of lead-contaminated soils using maize (Zea mays L.) plants

In the current study, we investigated the potential of Cronobacter sakazakii- ethylenediaminetetraacetic acid (EDTA) assisted phytoremediation potential of Zea mays L. to remediate lead (Pb)-contaminated soils. The C. sakazakii exhibited various stress tolerance mechanisms via plant growth promoting (PGP) traits, intrinsic extracellular enzyme production and antibiotic resistance. A greenhouse experiment was conducted to examine the dual effects of plant growth promoting endophytic bacteria (PGPEB)-chelator synergy in maize plants under different Pb contaminated soil regimes. C. sakazaii-EDTA (5 mM EDTA kg^-1) complex significantly (p < 0.05) enhanced plant growth and biomass (48.91%); chlorophyll a, b and carotenoid contents (27.26%, 25.02% and 42.09%); relative water content (61.33%); proline content (63.60%); root and shoot Pb accumulation capacity (52.31% and 44.71%) in Pb contaminated soils. This may suggest the efficacy of current approach in enhancing plant tolerance capability toward Pb-uptake and phytoremediation capacity. Moreover, maize plants showed differential response to Pb availability in soil-1 (S1; Pb spiked soil, 500 mg kg^-1) and soil-2 (S2; aged-contaminated soil) under various treatments. We describe the intriguing role of C. sakazakii-EDTA-maize system for Pb decontamination which can be used as a base line to explore the proposed combinatorial approach for long-term trails under field conditions for reclamation of Pb-contaminated soils.HighlightsThe PGPEB-EDTA mediated potential of Z. mays against Pb spiked and industrial contaminated soils is noticed.Increased tolerance of Z. mays against Pb in association with C. sakazakii, and EDTA is reported first time.Enhanced accumulation of metals by Z. mays is reported under combined treatment of C. sakazakii, and EDTA.Inoculation of plants with C. sakazakii, and EDTA has positive effects on growth and accumulation of Pb by Z. mays.

Bio-removal of Pb, Cu, and Ni from solutions as nano-carbonates using a plant-derived urease enzyme-urea mixture

This study focuses on utilizing a plant-derived urease enzyme (PDUE)-urea mixture to remove heavy metals from water as constituents of nano-carbonate minerals. The bio-removal process was conducted by individually mixing PbCl₂, CuCl₂, and NiCl₂ solutions with a PDUE-urea mixture, followed by incubation for 24 h at 23 ± 2 °C. The preliminary results revealed that the proposed method exhibited high Pb removal efficiency (˃ 99%) in a short time (8 h); meanwhile, moderate Cu and Ni removal efficiencies (67.91% and 58.49%, respectively) were obtained at the same incubation time. The concentration of heavy metals (50-200 mM) had an insignificant effect on the bio-removal rate, indicating that the PDUE-urea mixture is highly effective for the removal of heavy metals at different concentrations. The bio-removal process involved the transformation of soluble heavy metals into insoluble carbonate materials. A spherically shaped nano-cerussite (4-15 nm), a malachite hexahydrate nanosheet (thickness 8 nm), and an ultrafine micro-hellyerite (thickness 0.3 μm) were the main minerals produced by the Pb, Cu, and Ni bio-removal processes, respectively. As a beneficial application, nano-cerussite was used as an additive in an alkali-activated slag/ceramic waste-based geopolymeric coating. A preliminary study proved that increasing the nano-cerussite content enhanced the resistance of the geopolymeric coating to sulfur-oxidizing bacteria, which is detrimental to normal concrete, particularly in sewer systems.

Prospect of phytoremediation combined with other approaches for remediation of heavy metal-polluted soils

Accumulation of heavy metals in agricultural soils due to human production activities-mining, fossil fuel combustion, and application of chemical fertilizers/pesticides-results in severe environmental pollution. As the transmission of heavy metals through the food chain and their accumulation pose a serious risk to human health and safety, there has been increasing attention in the investigation of heavy metal pollution and search for effective soil remediation technologies. Here, we summarized and discussed the basic principles, strengths and weaknesses, and limitations of common standalone approaches such as those based on physics, chemistry, and biology, emphasizing their incompatibility with large-scale applications. Moreover, we explained the effects, advantages, and disadvantages of the combinations of common single repair approaches. We highlighted the latest research advances and prospects in phytoremediation-chemical, phytoremediation-microbe, and phytoremediation-genetic engineering combined with remediation approaches by changing metal availability, improving plant tolerance, promoting plant growth, improving phytoextraction and phytostabilization, etc. We then explained the improved safety and applicability of phytoremediation combined with other repair approaches compared to common standalone approaches. Finally, we established a prospective research direction of phytoremediation combined with multi-technology repair strategy.

Brown gold of marginal soil: Plant growth promoting bacteria to overcome plant abiotic stress for agriculture, biofuels and carbon sequestration

Marginal land is defined as land with poor soil characteristics and low crop productivity with no potential for profit. Poor soil quality due to the presence of xenobiotics or climate change is of great concern. Sustainable food production with increasing population is a challenge which becomes more difficult due to poor soil quality. Marginal soil can be made productive with the use of Plant Growth Promoting Bacteria (PGPB). This review outlines how PGPB can be used to improve marginal soil quality and its implications on agriculture, rhizoremediation, abiotic stress (drought, salinity and heavy metals) tolerance, carbon sequestration and production of biofuels. The feasibility of the idea is supported by several studies which showed maximal increase in the growth of plants inoculated with PGPB than to uninoculated plants grown in marginal soil when compared to the growth of plants inoculated with PGPB in healthy soil. The combination of PGPB and plants grown in marginal soil will serve as a green technology leading to the next green revolution, reduction in soil pollution and fossil fuel use, neutralizing abiotic stress and climate change effects.

Antagonic and plant growth-promoting effects of bacteria isolated from mine tailings at El Fraile, Mexico

Mine tailings contain high concentrations of heavy metals such as As, Pb, Cu, Mn, and Fe, which are detrimental to the health of humans and the environment. In tailings at the El Fraile mine in Guerrero, Mexico, some plant species are apparently tolerant of heavy metals and can be found growing in the tailings. These plants could be associating with heavy metal-tolerant bacteria that promote plant growth and improve biomass production, and these bacteria could be a useful alternative for bacteria-assisted phytoremediation. The objective of this study was to isolate bacteria detected in the mine tailings at El Fraile-Taxco, focusing on those in the soil from the rhizosphere, the inner tissue of the root, leachate, and water, which have the potential to promote plant growth. The ability of the isolated bacteria to promote plant growth was evaluated in vitro. Of the 151 morphotypes isolated, 51% fix nitrogen, 12% dissolve phosphates, and 12%, 39.7%, and 48.3% produce indole acetic acid, gibberellins, and siderophores, respectively. In addition, 66.7% were observed to produce lytic enzymes, such as proteases, celluloses, lipases, esterases, and amylases, which exhibited activity against Fusarium, Aspergillus, and Colletotrichum. The use of 16S rRNA analysis led to the identification of the bacterial genera Chryseobacterium, Bacillus, Pseudomonas, Mycobacterium, Staphylococcus, Curtobacterium, Enterobacter, Agrobacterium, Ochrobactrum, Serratia, Stenotrophomonas, and Acinetobacter. The bacteria isolated from the rhizosphere exhibited the greatest ability to fix nitrogen and produced indole acetic acid, gibberellins, siderophore, and lytic enzymes. In addition, the isolates collected from the soil samples demonstrated ability to solubilize phosphate.

Bioremediation of copper by active cells of Pseudomonas stutzeri LA3 isolated from an abandoned copper mine soil

Copper bioremoval efficiency and bioaccumulation capacity of Pseudomonas stutzeri LA3 isolated from copper contaminated soil were investigated. P. stutzeri LA3 removed about 50% of Cu (II) at 50 mg l^-1 of concentration and accumulated a maximum of 1.62 mg of Cu g^-1 biomass dry weight. Bioremediation by P. stutzeri LA3 partially depended on the production of extracellular polymeric substances, composed of proteins and carbohydrates. Cell surface alterations were observed on the Cu (II) treated biomass through a scanning electron microscope (SEM). Energy dispersive spectrometer (EDX) investigation of Cu (II) treated biomass showed clear signals of Cu, confirming the presence of copper ions on the cell surface. Fourier transform infrared spectroscopy (FTIR) showed the contribution of functional groups such as hydroxyl (-OH), carboxyl (-COOH), amide and amine (-NH₂) in the remediation process. Based on the results, the isolated strain P. stutzeri LA3 could serve as a potential candidate for copper due to its significant copper removal effeciency.

Removal of Pb(II) by Pellicle-Like Biofilm-Producing Methylobacterium hispanicum EM2 Strain from Aqueous Media

As concerns are increasing about drinking water contamination with heavy metals, we investigated the possible use of a pellicle (floating biofilm)-like biofilm-producing microorganism as a biosorbent for the treatment of Pb(II) in aqueous solutions. The bacterial pellicle-producing Methylobacterium hispanicum EM2 strain (EM2) was newly isolated from mine tailing soil, and we investigated its use as a biosorbent for treating a Pb(II)-contaminated aqueous solution. The EM2 strain was strongly resistant to Pb(II) up to a concentration of 800 mg/L, and achieved remarkable adsorption performance (adsorption rate and maximum adsorption capacity of 96% ± 3.2% and 79.84 mg/g, respectively) under optimal conditions (pH, biomass content, contact time, and initial Pb(II) concentration of 7.1 g/L, 60 min, and 10 mg/L, respectively). The adsorption of Pb(II) was characterized by scanning electron microscopy-energy dispersive x-ray spectroscopy and Fourier-transform infrared analysis. The equilibrium data matched the Freundlich isotherm model well, indicating the occurrence of multilayer adsorption of Pb(II) onto the heterogeneous surface of the EM2 strain, which was also consistent with the pseudo-second-order kinetic model (R2 = 0.98). The high Pb(II) removal efficiency was also confirmed by conducting an adsorption experiment using Pb(II)-contaminated industrial wastewater.

Rhizosphere response to nickel in a facultative hyperaccumulator

This study faces the characterization of the culturable microbiota of the facultative Ni-hyperaccumulator Alyssoides utriculata to obtain a collection of bacterial and fungal strains for potential applications in Ni phytoextraction. Rhizosphere soil samples and adjacent bare soil associated with A. utriculata from serpentine and non-serpentine sites were collected together with plant roots and shoots. Rhizobacteria and fungi were isolated and characterized genotypically and phenotypically. Plants and soils were analyzed for total element concentration using Inductively Coupled Plasma Mass Spectrometry (ICP-MS). Serpentine and non-serpentine sites differ in terms of elements concentration in soil, plant roots and shoots. Ni and Co are significantly higher on serpentine site, while Ca is more abundant in non-serpentine site. Bacteria and fungi were significantly more abundant in rhizosphere than in bare soil and were dominated by genera Arthrobacter, Bacillus and Streptomyces, Penicillium and Mucor. The genus Pseudomonas was only found in rhizospheric serpentine soils (<2% of total serpentine isolates) and with Streptomyces sp. showed highest Ni-tolerance up to 15 mM. The same occurred for Trichoderma strain, belonging to the harzianum group (<2% of the total microfungal count) and Penicillium ochrochloron (<10% of the total microfungal count, tolerance up to Ni 20 mM). Among serpentine bacterial isolates, 8 strains belonging to 5 genera showed at least one PGPR activity (1-Aminocyclopropane-1-Carboxylic Acid (ACC) deaminase activity, production of indole-3-acetic acid (IAA), siderophores and phosphate solubilizing capacity), especially genera Pantoea, Pseudomonas and Streptomyces. Those microorganisms might thus be promising candidates for employment in bioaugmentation trials.

Phosphate-solubilizing bacteria will not significantly remobilize soil cadmium remediated by weathered coal

Cadmium (Cd) re-mobilize by phosphate-solubilizing bacteria (PSB) from immobilization contaminated soil has drawn great attention due to its serious threat to human health through food chain. However, Cd binding with weathered coal (WC), an effective Cd immobilization material, will be re-mobilized by PSB or not is still unclear. In this study, the soil and sand pots with Cd were respectively mixed with the weight fractions of 0‰, 2‰, and 3‰ WC, inoculated with or without PSB, and planted with Amaranthus mangostanus L. The experimental results indicated that: (i) Cd in soil was transformed into organic fraction with WC, which has been led to the Cd accumulation concentrations in roots and shoots reduced by 38.8% and 20.5%, respectively; (ii) PSB could promote the concentration of exchangeable-Cd fraction and soil Cd uptake by amaranth in all treatments; and (iii) WC application in sand pot respectively reduced the Cd accumulation by 47.5% in roots and 24.1% in shoots, but PSB inoculation showed no significant effect on Cd accumulation in plants under WC application. SEM, zeta potential, and FT-IR results showed that PSB inoculation after Cd immobilized by WC had no influence on the microstructure, amount of negative charge, type, and content of functional groups in WC, indicating that organic fraction Cd in WC was not re-mobilized by PSB. Therefore, the application of WC in contaminated soil was conducive to transforming Cd in organic-bound forms and intensifying Cd immobilization effects.

Nutrient enhancement of chickpea grown with plant growth promoting bacteria in local soil of Bathinda, Northwestern India

Plant growth promoting bacteria (PGPB) enhance crop productivity as part of green technology to reduce the use of chemical fertilizers. They also have the capability to enhance macro- and micronutrient content of plants. In the present study, PGPB isolates belonging to Pseudomonas citronellis (PC), Pseudomonas sp. RA6, Serratia sp. S2, Serratia marcescens CDP13, and Frateuria aurantia (Symbion-K) were tested on two chickpea varieties, PBG1 and PBG5 grown for 30 days in local soil from Bathinda region in Northwestern India. PC and CDP13 were found to be better chickpea growth stimulators compared to the commercial Symbion-K based on shoot length and biomass. Most PGPB enhanced macro- and micronutrients in shoots to varying degrees compared to the control. PBG5 gave better response compared to PBG1 with reference to plant growth attributes and enhancement of the macronutrients, calcium, nitrogen and phosphorus and micronutrients, boron, copper, iron, and zinc. PBG5 is a high yielding variety with better resistance compared to PBG1. Overall, PGPB isolated from the local soil and PGPB from other parts of India were shown to be useful for enhancement of nutrient content and plant growth.

Pseudomonas citronellolis; a multi-metal resistant and potential plant growth promoter against arsenic (V) stress in chickpea

Soil micro-biota plays a vital role in maintaining plant growth and fitness under normal and adverse conditions. Pseudomonas is one of the most important free-living and copious genera in south-west Punjab and involved in plant growth promotion under heavy metal stress. In this study, we have studied microbial diversity of the agricultural and marginal land based on 16S rRNA gene and screened eight strains of Pseudomonas for its tolerances towards various heavy metals and for plant growth promoting properties (PGP). The best strain is tested in chickpea plants against Arsenic (As⁵⁺) stress. All the strains responded differently to heavy metals viz. Arsenic, (As⁵⁺ (0.3-0.5M) and As³⁺ (250 μg mL^-1) Cadmium (Cd²⁺) (250-350 μg mL^-1), Chromium (Cr²⁺) (200-350 μg mL^-1) and Mercury (Hg²⁺) (1-2 μg mL^-1). Out of eight strains, only two strains (KM594398 and KM594397) showed plant growth promoting characters, concurrently they were highly tolerant to Arsenic (As⁵⁺). Pseudomonas citronellolis (PC) (KM594397) showed the best results in terms of As⁵⁺ tolerance and plant growth promoting activity, hence further tested for actual plant growth response in chickpea (Cicer arietinum L.) under As⁵⁺ (10-160 mg kg^-1) stress. Pseudomonas citronellolis enhanced plant growth and dry biomass under As⁵⁺ stress. High As⁵⁺ tolerance and plant growth promoting activity of Pseudomonas citronellolis in chickpea especially designate this strain suitable for marginal lands and heavy metals contaminated sites.

Effects of vermicomposting on the main chemical properties and bioavailability of Cd/Zn in pure sludge

To study the effects of vermicomposting on the chemical properties and bioavailability of Cd/Zn in sludge, earthworms (Eisenia foetida) at different densities were inoculated into pure sludge, and sludge and earthworms were collected regularly to determine the earthworm biomass, the main chemical indexes, the structure of the functional groups, and the Cd/Zn content in the sludge. The results showed that the growth curve of earthworms in pure sludge could be well fitted by the logistic model. Earthworm activity eventually reduced the total organic carbon (TOC), fulvic acid (FA), and C/N ratio and increased the electrical conductivity (EC), total nitrogen (TN), humic acid (HA), and HA/FA ratio in the sludge. TOC, TN, and pH inhibited the bioavailability of Cd/Zn, while HA and EC promoted the bioavailability of Cd/Zn. Earthworm activity ultimately increased the content of Cd/Zn in the sludge. The bioavailability of Cd/Zn was reduced during the rapid growth period of the earthworms but increased during the stable growth period of the earthworms. A suitable vermicomposting time should be determined to ensure the activation or passivation of Cd/Zn.

Sorption mechanism and distribution of cadmium by different microbial species

Bioremediation programs of cadmium (Cd) by microorganisms have being proposed, but the underlying mechanism of the remediation ion remains unexplored. Here, the sorption efficiency and subcellular fraction distribution of Cd in three selected microbial species were investigated. Our results showed that both species of the microorganisms and initial Cd concentrations strongly affected the Cd sorption capacity. In the three microbial species, the Cd removal efficiency increased with decreased Cd concentrations. Specifically, Hansenula anomala removed the highest Cd ions in low concentration of 0.05 mg L^-1; while in medium concentration of 0.5 mg L^-1 and high concentration of 5 mg L^-1, Bacillus subtilis removed the highest Cd ions. The subcellular fractionation allocation showed that Cd was mainly allocated on cell wall (mantle and inner wall) in Pseudomonas stutzeri and B. subtilis, while cell cytomembrane accumulated similar amount of Cd compared to the cell wall of H. anomala at concentration of 0.5 mg L^-1. Meanwhile, the Cd distributions on cell subcellular fractionation of the three species changed along the contact times, suggesting varied migration models during the biosorption process. Moreover, the functional groups involved in biosorption differed among the species based on Fourier Transform Infrared (FTIR) analysis. Our results have important implications for developing and improving Cd remediation by microorganisms, which is a low-cost and environmentally friendly bioremediation strategy of Cd pollution in environments.

Utilization of nanomaterials for in-situ remediation of heavy metal(loid) contaminated sediments: A review

Heavy metal(loid)s are toxic and non-biodegradable environmental pollutants. The contamination of sediments with heavy metal(loid)s has attracted increasing attention due to the negative environmental effects of heavy metal(loid)s and the development of new remediation techniques for metal(loid) contaminated sediments. As a result of rapid nanotechnology development, nanomaterials are also being increasingly utilized for the remediation of contaminated sediments due to their excellent capacity of immobilizing/adsorbing metal(loid) ions. This review summarizes recent studies that have used various nanomaterials such as nanoscale zero-valent iron (nZVI), stabilizer-modified nZVI, nano apatite based-materials including nano-hydroxyapatite particles (nHAp) and stabilized nano-chlorapatite (nCLAP), carbon nanotubes (CNTs), and titanium dioxide nanoparticles (TiO₂ NPs) for the remediation of heavy metal(loid) contaminated sediments. We also review the analysis of potential mechanisms involved in the interaction of nanomaterials with metal(loid) ions. Subsequently, we discuss the factors affecting the nanoparticle-heavy metal(loid)s interaction, the environmental impacts resulting from the application of nanomaterials, the knowledge gaps, and potential future research.

Responses of soil aggregates and bacterial communities to soil-Pb immobilization induced by biofertilizer

The objective of this study was to investigate how soil aggregates and bacterial communities responded to soil-lead (Pb) immobilization induced by biofertilizer. Wheat (Triticum spp.) was planted in Pb-polluted soil. The re-distribution of Pb in soil aggregates and change of soil microbial communities due to biofertilizers were believed to be responsible for immobilizing soil Pb and alleviating its phytotoxicity. Adding biofertilizer promoted the formation of large aggregates (0.20-2.0 mm) with more mass loading of Pb, and increased soil bacterial diversity and the abundance of beneficial taxa such as those from the phyla Bacteroidetes, Actinobacteria, and Proteobacteria. In addition, there was significant alleviation of Pb availability as indicated by decreases in the values of bioconcentration factors (BCF) (up to 35.7% and 42.3% for roots and shoots, respectively) of wheat and DTPA-extractable Pb in soil (up to 34.4%) receiving fertilizer treatments compared with the CK (no treatment). Similar bacterial community structures and alpha diversities for the biofertilizer treatments and their autoclaved controls were observed, suggesting that physicochemical properties drove the structure of the soil bacterial community. This study introduced a new idea for development of effective strategies to control or reduce soil Pb risks.

An overview of field-scale studies on remediation of soil contaminated with heavy metals and metalloids: Technical progress over the last decade

Soil contamination by heavy metals and metalloids has been a major concern to human health and environmental quality. While many remediation technologies have been tested at the bench scale, there have been only limited reports at the field scale. This paper aimed to provide a comprehensive overview on the field applications of various soil remediation technologies performed over the last decade or so. Under the general categories of physical, chemical, and biological approaches, ten remediation techniques were critically reviewed. The technical feasibility and economic effectiveness were evaluated, and the pros and cons were appraised. In addition, attention was placed to the environmental impacts of the remediation practices and long-term stability of the contaminants, which should be taken into account in the establishment of remediation goals and environmental criteria. Moreover, key knowledge gaps and practical challenges are identified.

Metal(loid)-resistant bacteria reduce wheat Cd and As uptake in metal(loid)-contaminated soil

This study characterized the effect of the metal(loid)-resistant bacteria Ralstonia eutropha Q2-8 and Exiguobacterium aurantiacum Q3-11 on Cd and As accumulation in wheat grown in Cd- and As-polluted soils (1 mg kg^-1 of Cd + 40 mg kg^-1 of As and 2 mg kg^-1 of Cd + 60 mg kg^-1 of As). The influence of strains Q2-8 and Q3-11 on water-soluble Cd and As and NH₄⁺concentration and pH in the soil filtrate were also analyzed. Inoculation with these strains significantly reduced wheat plant Cd (12-32%) and As (9-29%) uptake and available Cd (15-28%) and As (22-38%) contents in rhizosphere soils compared to the controls. Furthermore, these strains significantly increased the relative abundances of the arsM bacterial As metabolism gene and of Fe- and Mn-oxidizing Leptothrix species in rhizosphere soils. Notably, these strains significantly reduced water-soluble Cd and As concentrations and increased pH and NH₄⁺ concentration in the soil filtrate. These results suggest that these strains increased soil pH and the abundance of genes possibly involved in metal(loid) unavailability, resulting in reduced wheat Cd and As accumulation and highlight the possibility of using bacteria for in situ remediation and safe production of wheat or other food crops in metal(loid)-polluted soils.

Biological approaches to tackle heavy metal pollution: A survey of literature

Pollution by heavy metals has been identified as a global threat since the inception of industrial revolution. Heavy metal contamination induces serious health and environmental hazards due to its toxic nature. Remediation of heavy metals by conventional methods is uneconomical and generates a large quantity of secondary wastes. On the other hand, biological agents such as plants, microorganisms etc. offer easy and eco-friendly ways for metal removal; hence, considered as efficient and alternative tools for metal removal. Bioremediation involves adsorption, reduction or removal of contaminants from the environment through biological resources (both microorganisms and plants). The heavy metal remediation properties of microorganisms stem from their self defense mechanisms such as enzyme secretion, cellular morphological changes etc. These defence mechanisms comprise the active involvement of microbial enzymes such as oxidoreductases, oxygenases etc, which influence the rates of bioremediation. Further, immobilization techniques are improving the practice at industrial scales. This article summarizes the various strategies inherent in the biological sorption and remediation of heavy metals.

Effect of Phosphate-Solubilizing Bacteria on the Mobility of Insoluble Cadmium and Metabolic Analysis

Phosphate-solubilizing bacteria (PSB) can promote plant growth by dissolving insoluble phosphate. Therefore, PSB may have the potential to improve the mobility of heavy metals in soils and enhance phytoextraction. This study isolated a few PSB strains that could dissolve CdCO₃ and solid Cd in soil. Two typical PSB, namely, high- and low-Cd-mobilizing PSB (Pseudomonas fluorescens gim-3 and Bacillus cereus qh-35, respectively), were selected to analyze the metabolic profiles, metabolic pathways, and mechanisms of mobilization of insoluble Cd. A total of 34 metabolites secreted by the two PSB strains were identified. Gluconic acid was the main contributor to Cd dissolution (42.4%) in high-Cd-mobilizing PSB. By contrast, gluconic acid was not secreted in low-Cd-mobilizing PSB. Metabolic pathway analysis showed that gluconic acid was produced by the peripheral direct oxidation pathway. Hence, PSB with peripheral direct oxidation pathway were likely to have high-Cd-mobilizing capacity.

No effect of intraspecific relatedness on public goods cooperation in a complex community

Many organisms—notably microbes—are embedded within complex communities where cooperative behaviors in the form of excreted public goods can benefit other species. Under such circumstances, intraspecific interactions are likely to be less important in driving the evolution of cooperation. We first illustrate this idea with a simple theoretical model, showing that relatedness—the extent to which individuals with the same cooperative alleles interact with each other—has a reduced impact on the evolution of cooperation when public goods are shared between species. We test this empirically using strain of Pseudomonas aeruginosa that vary in their production of metal‐chelating siderophores in copper contaminated compost (an interspecific public good). We show that nonsiderophore producers grow poorly relative to producers under high relatedness, but this cost can be alleviated by the presence of the isogenic producer (low relatedness) and/or the compost microbial community. Hence, relatedness can become unimportant when public goods provide interspecific benefits.

Isolation of lead-resistant Arthrobactor strain GQ-9 and its biosorption mechanism

In this study, lead-resistant bacterium Arthrobacter sp. GQ-9 with a resistant capability to cadmium, zinc, and copper was isolated from a heavy metal polluted soil. Microcalorimetry analysis was applied to assess the strain's microbial activity under Pb(II) stress and suggested that GQ-9's microbial activities under Pb(II) stress were stronger than a non-resistant strain. Biosorption batch experiments revealed that the optimal condition for adsorption of Pb(II) by GQ-9 was pH 5.5, a biomass dosage of 1.2 g L^-1, and an initial Pb(II) concentration of 100 mg L^-1 with a maximum biosorption capacity of 17.56 mg g^-1.Adsorption-desorption experiments and Fourier transform infrared spectroscopy (FTIR) analysis were applied to elucidate the biosorption mechanisms. Adsorption-desorption analysis showed that GQ-9 cells could sequester 56.60% of the adsorbed Pb(II) ions on the cell wall. FTIR analysis suggested that hydroxyl, carboxyl, amino, nitrile, and sulfhydryl groups and amide I, amide II bands on the GQ-9 cell wall participated in the complexation of Pb(II) ions. The present study illustrates that the lead-resistant bacteria GQ-9 has the potential for further development of an effective and ecofriendly adsorbent for heavy metal bioremediation.

A bacterium with close genetic identity to Pseudomonas mandelii associated with spring fish kills in wild bluegill Lepomis macrochirus Rafinesque and pumpkinseed sunfish Lepomis gibbosus (Linnaeus)

Pseudomonas fluorescens are known bacterial pathogens in fish. The P. fluorescens group contains at least nine different bacterial species, although species from fish have rarely been differentiated. Two isolated fish kills affecting wild bluegills, Lepomis macrochirus Rafinesque, and pumpkinseed sunfish, Lepomis gibbosus (Linnaeus), occurred in the spring of 2015 during cool water temperatures (12.5°C-15.5°C). Disease signs included severe bacteraemia with rare gross external signs. Pure bacterial cultures isolated from kidneys of all affected fish were identified as P. fluorescens using the API 20NE system, while no bacteria were isolated from asymptomatic fish. To further identify the species of bacterium within the P. fluorescens complex, genetic analysis of the 16S rRNA, rpoD and gyrB genes was conducted. DNA sequences of bacterial isolates from both mortality events were identical and had close identity (≥99.7%) to Pseudomonas mandelii. Although likely widespread in the aquatic environment, this is the first report of a bacterium closely resembling P. mandelii infecting and causing disease in fish. The bacterium grew at temperatures between 5°C and 30°C, but not at 37°C. It is possible that infections in fish were a result of immunosuppression associated with spring conditions combined with the psychrotrophic nature of the bacterium.

Application of phosphate solubilizing bacteria in immobilization of Pb and Cd in soil

In the present study, heavy metal (HM)-tolerant phosphate solubilizing bacteria (PSB) were isolated and their performance during the remediation of Pb and Cd in contaminated soil was studied. A total of 16 bacterial strains and one consortium were isolated, and the consortium had the highest phosphate solubilizing ability and HM tolerance. Great variations between the Fourier transform infrared (FTIR) spectra of consortium cells before and after adsorption of Pb²⁺ and Cd²⁺ revealed that amide I/amide II bonds and carboxyl on the cell surface were involved in binding of metal ions. High-throughput sequencing technique revealed that the consortium was composed of Enterobacter spp., Bacillus spp., and Lactococcus spp. The consortium was added into contaminated soil, and its potential ability in dissolution of phosphate from Ca₃(PO₄)₂ and subsequent immobilization of HMs was tested. Results showed that when Ca₃(PO₄)₂ was applied at 10.60 mg/g soil, PSB addition significantly increased soil available phosphate content from 12.28 to 17.30 mg/kg, thereby enhancing the immobilization rate of Pb and Cd from 69.95 to 80.76% and from 28.38 to 30.81%, respectively. Microcalorimetric analysis revealed that PSB addition significantly improved soil microbial activity, which was possibly related with the decreased HMs availability and the nutrient effect of the solubilized phosphate. The present study can provide a cost-effective and environmental-friendly strategy to remediate multiple HM-contaminated soils.

The Role of Plant Growth-Promoting Bacteria in Metal Phytoremediation

Phytoremediation is a promising technology that uses plants and their associated microbes to clean up contaminants from the environment. In recent years, phytoremediation assisted by plant growth-promoting bacteria (PGPB) has been highly touted for cleaning up toxic metals from soil. PGPB include rhizospheric bacteria, endophytic bacteria and the bacteria that facilitate phytoremediation by other means. This review provides information about the traits and mechanisms possessed by PGPB that improve plant metal tolerance and growth, and illustrate mechanisms responsible for plant metal accumulation/translocation in plants. Several recent examples of phytoremediation of metals facilitated by PGPB are reviewed. Although many encouraging results have been reported in the past years, there have also been numerous challenges encountered in phytoremediation in the field. To implement PGPB-assisted phytoremediation of metals in the natural environment, there is also a need to critically assess the ecological effects of PGPB, especially for those nonnative bacteria.