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For: Peracchi A, Bonaccio M, Clerici M. A mutational analysis of the 8-17 deoxyribozyme core. J Mol Biol 2005;352:783-94. [PMID: 16125199 DOI: 10.1016/j.jmb.2005.07.059] [Citation(s) in RCA: 77] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2005] [Revised: 07/20/2005] [Accepted: 07/21/2005] [Indexed: 11/24/2022]
Number Cited by Other Article(s)
1
Zhang F, Shi W, Guo L, Liu S, He J. The Programmable Catalytic Core of 8-17 DNAzymes. Molecules 2024;29:2420. [PMID: 38893308 PMCID: PMC11173380 DOI: 10.3390/molecules29112420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2024] [Revised: 05/12/2024] [Accepted: 05/13/2024] [Indexed: 06/21/2024]  Open
2
Chiba K, Yamaguchi T, Obika S. Development of 8-17 XNAzymes that are functional in cells. Chem Sci 2023;14:7620-7629. [PMID: 37476720 PMCID: PMC10355097 DOI: 10.1039/d3sc01928d] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Accepted: 06/20/2023] [Indexed: 07/22/2023]  Open
3
Ekesan Ş, York DM. Who stole the proton? Suspect general base guanine found with a smoking gun in the pistol ribozyme. Org Biomol Chem 2022;20:6219-6230. [PMID: 35452066 PMCID: PMC9378597 DOI: 10.1039/d2ob00234e] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
4
Parra-Meneses V, Rojas-Hernández F, Cepeda-Plaza M. The role of Na+ in catalysis by the 8-17 DNAzyme. Org Biomol Chem 2022;20:6356-6362. [PMID: 35856910 DOI: 10.1039/d2ob01075e] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
5
Zhang W, Li Y, Du S, Chai Z, He J. Activation of 8-17 DNAzyme with extra functional group at conserved residues is related to catalytic metal ion. Bioorg Med Chem Lett 2021;48:128234. [PMID: 34214510 DOI: 10.1016/j.bmcl.2021.128234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2021] [Revised: 06/05/2021] [Accepted: 06/25/2021] [Indexed: 11/29/2022]
6
Cortés-Guajardo C, Rojas-Hernández F, Paillao-Bustos R, Cepeda-Plaza M. Hydrated metal ion as a general acid in the catalytic mechanism of the 8-17 DNAzyme. Org Biomol Chem 2021;19:5395-5402. [PMID: 34047747 DOI: 10.1039/d1ob00366f] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
7
Moon WJ, Huang PJJ, Liu J. Probing Metal-Dependent Phosphate Binding for the Catalysis of the 17E DNAzyme. Biochemistry 2021;60:1909-1918. [PMID: 34106684 DOI: 10.1021/acs.biochem.1c00091] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
8
Wang Q, Tan K, Wang H, Shang J, Wan Y, Liu X, Weng X, Wang F. Orthogonal Demethylase-Activated Deoxyribozyme for Intracellular Imaging and Gene Regulation. J Am Chem Soc 2021;143:6895-6904. [PMID: 33905655 DOI: 10.1021/jacs.1c00570] [Citation(s) in RCA: 84] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
9
Yang Y, Li W, Liu J. Review of recent progress on DNA-based biosensors for Pb2+ detection. Anal Chim Acta 2020;1147:124-143. [PMID: 33485571 DOI: 10.1016/j.aca.2020.12.056] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2020] [Revised: 12/12/2020] [Accepted: 12/25/2020] [Indexed: 02/08/2023]
10
Moon WJ, Yang Y, Liu J. Zn2+ -Dependent DNAzymes: From Solution Chemistry to Analytical, Materials and Therapeutic Applications. Chembiochem 2020;22:779-789. [PMID: 33007113 DOI: 10.1002/cbic.202000586] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2020] [Revised: 10/01/2020] [Indexed: 12/20/2022]
11
Characterization of a DNA-hydrolyzing DNAzyme for generation of PCR strands of unequal length. Biochimie 2020;179:181-189. [PMID: 33022314 DOI: 10.1016/j.biochi.2020.10.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Revised: 09/13/2020] [Accepted: 10/01/2020] [Indexed: 11/21/2022]
12
Gaines CS, Piccirilli JA, York DM. The L-platform/L-scaffold framework: a blueprint for RNA-cleaving nucleic acid enzyme design. RNA (NEW YORK, N.Y.) 2020;26:111-125. [PMID: 31776179 PMCID: PMC6961537 DOI: 10.1261/rna.071894.119] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2019] [Accepted: 11/14/2019] [Indexed: 05/13/2023]
13
Du S, Li Y, Chai Z, Shi W, He J. Site-specific functionalization with amino, guanidinium, and imidazolyl groups enabling the activation of 10–23 DNAzyme. RSC Adv 2020;10:19067-19075. [PMID: 35518333 PMCID: PMC9053948 DOI: 10.1039/d0ra02226h] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Accepted: 05/01/2020] [Indexed: 12/16/2022]  Open
14
Cepeda-Plaza M, Peracchi A. Insights into DNA catalysis from structural and functional studies of the 8-17 DNAzyme. Org Biomol Chem 2020;18:1697-1709. [DOI: 10.1039/c9ob02453k] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
15
Ren W, Huang PJJ, He M, Lyu M, Wang S, Wang C, Liu J. The Two Classic Pb2+ -Selective DNAzymes Are Related: Rational Evolution for Understanding Metal Selectivity. Chembiochem 2019;21:1293-1297. [PMID: 31755629 DOI: 10.1002/cbic.201900664] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Indexed: 01/09/2023]
16
Ekesan Ş, York DM. Dynamical ensemble of the active state and transition state mimic for the RNA-cleaving 8-17 DNAzyme in solution. Nucleic Acids Res 2019;47:10282-10295. [PMID: 31511899 PMCID: PMC6821293 DOI: 10.1093/nar/gkz773] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Revised: 08/20/2019] [Accepted: 09/03/2019] [Indexed: 02/01/2023]  Open
17
Du S, Li Y, Chai Z, Shi W, He J. Functionalization of 8-17 DNAzymes modulates catalytic efficiency and divalent metal ion preference. Bioorg Chem 2019;94:103401. [PMID: 31711763 DOI: 10.1016/j.bioorg.2019.103401] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2019] [Revised: 10/17/2019] [Accepted: 10/24/2019] [Indexed: 11/26/2022]
18
Moon WJ, Liu J. Replacing Mg2+by Fe2+for RNA‐Cleaving DNAzymes. Chembiochem 2019;21:401-407. [DOI: 10.1002/cbic.201900344] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2019] [Indexed: 12/14/2022]
19
Banno A, Higashi S, Shibata A, Ikeda M. A stimuli-responsive DNAzyme displaying Boolean logic-gate responses. Chem Commun (Camb) 2019;55:1959-1962. [PMID: 30681683 DOI: 10.1039/c8cc09345h] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
20
Tang W, Cheng M, Dai D, Xiong Z, Liu F. Rational design of sequestered DNAzyme beacons to enable flexible control of catalytic activities. RSC Adv 2018;8:29338-29343. [PMID: 35548005 PMCID: PMC9084462 DOI: 10.1039/c8ra05757e] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Accepted: 08/08/2018] [Indexed: 01/18/2023]  Open
21
Cepeda-Plaza M, McGhee CE, Lu Y. Evidence of a General Acid-Base Catalysis Mechanism in the 8-17 DNAzyme. Biochemistry 2018;57:1517-1522. [PMID: 29389111 PMCID: PMC5879137 DOI: 10.1021/acs.biochem.7b01096] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
22
Dhamodharan V, Kobori S, Yokobayashi Y. Large Scale Mutational and Kinetic Analysis of a Self-Hydrolyzing Deoxyribozyme. ACS Chem Biol 2017;12:2940-2945. [PMID: 29058875 DOI: 10.1021/acschembio.7b00621] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
23
Zhou W, Saran R, Ding J, Liu J. Two Completely Different Mechanisms for Highly Specific Na+ Recognition by DNAzymes. Chembiochem 2017;18:1828-1835. [PMID: 28658518 DOI: 10.1002/cbic.201700184] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2017] [Indexed: 02/06/2023]
24
Zhou W, Saran R, Liu J. Metal Sensing by DNA. Chem Rev 2017;117:8272-8325. [DOI: 10.1021/acs.chemrev.7b00063] [Citation(s) in RCA: 568] [Impact Index Per Article: 81.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
25
Zhou W, Ding J, Liu J. Theranostic DNAzymes. Am J Cancer Res 2017;7:1010-1025. [PMID: 28382172 PMCID: PMC5381262 DOI: 10.7150/thno.17736] [Citation(s) in RCA: 154] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2016] [Accepted: 10/31/2016] [Indexed: 02/07/2023]  Open
26
Peracchi A, Bonaccio M, Credali A. Local conformational changes in the 8–17 deoxyribozyme core induced by activating and inactivating divalent metal ions. Org Biomol Chem 2017;15:8802-8809. [DOI: 10.1039/c7ob02001e] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
27
A mini-review on functional nucleic acids-based heavy metal ion detection. Biosens Bioelectron 2016;86:353-368. [DOI: 10.1016/j.bios.2016.06.075] [Citation(s) in RCA: 113] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2016] [Revised: 06/24/2016] [Accepted: 06/24/2016] [Indexed: 02/07/2023]
28
Zhu J, Li Z, Wang Q, Liu Y, He J. The contribution of adenines in the catalytic core of 10-23 DNAzyme improved by the 6-amino group modifications. Bioorg Med Chem Lett 2016;26:4462-4465. [DOI: 10.1016/j.bmcl.2016.07.076] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2016] [Revised: 07/13/2016] [Accepted: 07/29/2016] [Indexed: 10/21/2022]
29
Hwang K, Hosseinzadeh P, Lu Y. Biochemical and Biophysical Understanding of Metal Ion Selectivity of DNAzymes. Inorganica Chim Acta 2016;452:12-24. [PMID: 27695134 DOI: 10.1016/j.ica.2016.04.017] [Citation(s) in RCA: 73] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
30
Zhou W, Zhang Y, Ding J, Liu J. In Vitro Selection in Serum: RNA-Cleaving DNAzymes for Measuring Ca2+ and Mg2+. ACS Sens 2016. [DOI: 10.1021/acssensors.5b00306] [Citation(s) in RCA: 56] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
31
Kasprowicz A, Stokowa-Sołtys K, Wrzesiński J, Jeżowska-Bojczuk M, Ciesiołka J. In vitro selection of deoxyribozymes active with Cd(2+) ions resulting in variants of DNAzyme 8-17. Dalton Trans 2016;44:8138-49. [PMID: 25836771 DOI: 10.1039/c5dt00187k] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
32
Räz MH, Hollenstein M. Probing the effect of minor groove interactions on the catalytic efficiency of DNAzymes 8-17 and 10-23. MOLECULAR BIOSYSTEMS 2016;11:1454-61. [PMID: 25854917 DOI: 10.1039/c5mb00102a] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
33
Saran R, Liu J. A comparison of two classic Pb2+-dependent RNA-cleaving DNAzymes. Inorg Chem Front 2016. [DOI: 10.1039/c5qi00125k] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
34
Hollenstein M. DNA Catalysis: The Chemical Repertoire of DNAzymes. Molecules 2015;20:20777-804. [PMID: 26610449 PMCID: PMC6332124 DOI: 10.3390/molecules201119730] [Citation(s) in RCA: 119] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2015] [Revised: 11/10/2015] [Accepted: 11/11/2015] [Indexed: 12/24/2022]  Open
35
Saran R, Chen Q, Liu J. Searching for a DNAzyme Version of the Leadzyme. J Mol Evol 2015;81:235-44. [PMID: 26458991 DOI: 10.1007/s00239-015-9702-z] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2015] [Accepted: 10/02/2015] [Indexed: 11/25/2022]
36
Vazin M, Huang PJJ, Matuszek Ż, Liu J. Biochemical Characterization of a Lanthanide-Dependent DNAzyme with Normal and Phosphorothioate-Modified Substrates. Biochemistry 2015;54:6132-8. [DOI: 10.1021/acs.biochem.5b00691] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
37
Liu Y, Liu G, Li Z, Rong W, Yu J, Zhou Y, Liu K, Zheng Z, He J. Studies on the effect of thymine-mercury-thymine stem as a structural or functional motif in DNAzymes. NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS 2015;33:645-55. [PMID: 25222518 DOI: 10.1080/15257770.2014.912322] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
38
Zhou W, Chen Q, Huang PJJ, Ding J, Liu J. DNAzyme Hybridization, Cleavage, Degradation, and Sensing in Undiluted Human Blood Serum. Anal Chem 2015;87:4001-7. [DOI: 10.1021/acs.analchem.5b00220] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
39
Wang F, Saran R, Liu J. Tandem DNAzymes for mRNA cleavage: choice of enzyme, metal ions and the antisense effect. Bioorg Med Chem Lett 2015;25:1460-3. [PMID: 25769818 DOI: 10.1016/j.bmcl.2015.02.032] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2014] [Revised: 02/12/2015] [Accepted: 02/16/2015] [Indexed: 11/30/2022]
40
Brown CW, Lakin MR, Stefanovic D, Graves SW. Catalytic molecular logic devices by DNAzyme displacement. Chembiochem 2014;15:950-4. [PMID: 24692254 DOI: 10.1002/cbic.201400047] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2014] [Indexed: 01/09/2023]
41
Cepeda-Plaza M, Null EL, Lu Y. Metal ion as both a cofactor and a probe of metal-binding sites in a uranyl-specific DNAzyme: a uranyl photocleavage study. Nucleic Acids Res 2013;41:9361-70. [PMID: 23939617 PMCID: PMC3814387 DOI: 10.1093/nar/gkt694] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]  Open
42
RNA-Cleaving DNA Enzymes and Their Potential Therapeutic Applications as Antibacterial and Antiviral Agents. FROM NUCLEIC ACIDS SEQUENCES TO MOLECULAR MEDICINE 2012. [PMCID: PMC7119987 DOI: 10.1007/978-3-642-27426-8_15] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
43
Rong W, Xu L, Liu Y, Yu J, Zhou Y, Liu K, He J. 8-17 DNAzyme modified with purine analogs in its catalytic core: the conservation of the five-membered moieties of purine residues. Bioorg Med Chem Lett 2012;22:4238-41. [PMID: 22672797 DOI: 10.1016/j.bmcl.2012.05.044] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2012] [Revised: 05/08/2012] [Accepted: 05/09/2012] [Indexed: 10/28/2022]
44
Jung J, Han KY, Koh HR, Lee J, Choi YM, Kim C, Kim SK. Effect of Single-Base Mutation on Activity and Folding of 10-23 Deoxyribozyme Studied by Three-Color Single-Molecule ALEX FRET. J Phys Chem B 2012;116:3007-12. [DOI: 10.1021/jp2117196] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
45
Lan T, Lu Y. Metal Ion-Dependent DNAzymes and Their Applications as Biosensors. Met Ions Life Sci 2012;10:217-48. [DOI: 10.1007/978-94-007-2172-2_8] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
46
Wachowius F, Höbartner C. Probing essential nucleobase functional groups in aptamers and deoxyribozymes by nucleotide analogue interference mapping of DNA. J Am Chem Soc 2011;133:14888-91. [PMID: 21863810 DOI: 10.1021/ja205894w] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
47
Lam JCF, Kwan SO, Li Y. Characterization of non-8-17 sequences uncovers structurally diverse RNA-cleaving deoxyribozymes. MOLECULAR BIOSYSTEMS 2011;7:2139-46. [PMID: 21523306 DOI: 10.1039/c1mb05034f] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
48
Wachowius F, Javadi-Zarnaghi F, Höbartner C. Combinatorial mutation interference analysis reveals functional nucleotides required for DNA catalysis. Angew Chem Int Ed Engl 2011;49:8504-8. [PMID: 20872387 DOI: 10.1002/anie.201003940] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
49
Wang B, Cao L, Chiuman W, Li Y, Xi Z. Probing the function of nucleotides in the catalytic cores of the 8-17 and 10-23 DNAzymes by abasic nucleotide and C3 spacer substitutions. Biochemistry 2010;49:7553-62. [PMID: 20698496 DOI: 10.1021/bi100304b] [Citation(s) in RCA: 74] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
50
Sekhon GS, Sen D. A Stereochemical Glimpse of the Active Site of the 8−17 Deoxyribozyme from Iodine-Mediated Cross-Links Formed with the Substrate’s Scissile Site. Biochemistry 2010;49:9072-7. [DOI: 10.1021/bi1013547] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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