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For: Galkin VE, Yu X, Bielnicki J, Ndjonka D, Bell CE, Egelman EH. Cleavage of bacteriophage lambda cI repressor involves the RecA C-terminal domain. J Mol Biol 2008;385:779-87. [PMID: 19013467 DOI: 10.1016/j.jmb.2008.10.081] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2008] [Revised: 10/18/2008] [Accepted: 10/21/2008] [Indexed: 11/25/2022]
Number Cited by Other Article(s)
1
Ambros CL, Ehrmann MA. Fate, inducibility, and behavior of Latilactobacillus curvatus temperate phage TMW 1.591 P1 during sausage fermentation. J Appl Microbiol 2024;135:lxae175. [PMID: 38991993 DOI: 10.1093/jambio/lxae175] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 06/28/2024] [Accepted: 07/10/2024] [Indexed: 07/13/2024]
2
Adams MC, Schiltz C, Sun J, Hosford C, Johnson V, Pan H, Borbat P, Freed J, Thomason L, Court C, Court D, Chappie J. The crystal structure of bacteriophage λ RexA provides novel insights into the DNA binding properties of Rex-like phage exclusion proteins. Nucleic Acids Res 2024;52:4659-4675. [PMID: 38554102 PMCID: PMC11077077 DOI: 10.1093/nar/gkae212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Revised: 03/07/2024] [Accepted: 03/12/2024] [Indexed: 04/01/2024]  Open
3
Nyíri K, Gál E, Laczkovich M, Vértessy BG. Antirepressor specificity is shaped by highly efficient dimerization of the staphylococcal pathogenicity island regulating repressors: Stl repressor dimerization perturbed by dUTPases. Sci Rep 2024;14:1953. [PMID: 38263343 PMCID: PMC10806181 DOI: 10.1038/s41598-024-51260-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Accepted: 01/02/2024] [Indexed: 01/25/2024]  Open
4
Varming AK, Huang Z, Hamad GM, Rasmussen KK, Ingmer H, Kilstrup M, Lo Leggio L. CI:Mor interactions in the lysogeny switches of Lactococcus lactis TP901-1 and Staphylococcus aureus φ13 bacteriophages. MICROBIOME RESEARCH REPORTS 2024;3:15. [PMID: 38841409 PMCID: PMC11149083 DOI: 10.20517/mrr.2023.50] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 12/29/2023] [Accepted: 01/09/2024] [Indexed: 06/07/2024]
5
Mutate or die: Atomic structures explain bacterial SOS induction. Proc Natl Acad Sci U S A 2023;120:e2221605120. [PMID: 36693092 PMCID: PMC9945995 DOI: 10.1073/pnas.2221605120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]  Open
6
Structural basis for regulation of SOS response in bacteria. Proc Natl Acad Sci U S A 2023;120:e2217493120. [PMID: 36598938 PMCID: PMC9926225 DOI: 10.1073/pnas.2217493120] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]  Open
7
King S, Quick A, King K, Walker AR, Shields RC. Activation of TnSmu1, an integrative and conjugative element, by an ImmR-like transcriptional regulator in Streptococcus mutans. MICROBIOLOGY (READING, ENGLAND) 2022;168. [PMID: 36201342 DOI: 10.1099/mic.0.001254] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
8
Arvidsson I, Tontanahal A, Johansson K, Kristoffersson AC, Kellnerová S, Berger M, Dobrindt U, Karpman D. Apyrase decreases phage induction and Shiga toxin release from E. coli O157:H7 and has a protective effect during infection. Gut Microbes 2022;14:2122667. [PMID: 36138514 PMCID: PMC9519026 DOI: 10.1080/19490976.2022.2122667] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
9
Kaushik V, Tiwari M, Tiwari V. Interaction of RecA mediated SOS response with bacterial persistence, biofilm formation, and host response. Int J Biol Macromol 2022;217:931-943. [PMID: 35905765 DOI: 10.1016/j.ijbiomac.2022.07.176] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Revised: 07/20/2022] [Accepted: 07/22/2022] [Indexed: 11/28/2022]
10
Boeckman J, Korn A, Yao G, Ravindran A, Gonzalez C, Gill J. Sheep in wolves’ clothing: Temperate T7-like bacteriophages and the origins of the Autographiviridae. Virology 2022;568:86-100. [DOI: 10.1016/j.virol.2022.01.013] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Revised: 01/14/2022] [Accepted: 01/22/2022] [Indexed: 12/25/2022]
11
Sánchez-Osuna M, Cortés P, Lee M, Smith AT, Barbé J, Erill I. Non-canonical LexA proteins regulate the SOS response in the Bacteroidetes. Nucleic Acids Res 2021;49:11050-11066. [PMID: 34614190 PMCID: PMC8565304 DOI: 10.1093/nar/gkab773] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Revised: 08/18/2021] [Accepted: 10/04/2021] [Indexed: 02/07/2023]  Open
12
Ansari S, Walsh JC, Bottomley AL, Duggin IG, Burke C, Harry EJ. A newly identified prophage-encoded gene, ymfM, causes SOS-inducible filamentation in Escherichia coli. J Bacteriol 2021;203:JB.00646-20. [PMID: 33722843 PMCID: PMC8117526 DOI: 10.1128/jb.00646-20] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2020] [Accepted: 02/26/2021] [Indexed: 12/29/2022]  Open
13
Chen B, Chen Z, Wang Y, Gong H, Sima L, Wang J, Ouyang S, Gan W, Krupovic M, Chen X, Du S. ORF4 of the Temperate Archaeal Virus SNJ1 Governs the Lysis-Lysogeny Switch and Superinfection Immunity. J Virol 2020;94:e00841-20. [PMID: 32522850 PMCID: PMC7394903 DOI: 10.1128/jvi.00841-20] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Accepted: 06/01/2020] [Indexed: 12/21/2022]  Open
14
Ghodke H, Paudel BP, Lewis JS, Jergic S, Gopal K, Romero ZJ, Wood EA, Woodgate R, Cox MM, van Oijen AM. Spatial and temporal organization of RecA in the Escherichia coli DNA-damage response. eLife 2019;8:42761. [PMID: 30717823 PMCID: PMC6363387 DOI: 10.7554/elife.42761] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2018] [Accepted: 01/22/2019] [Indexed: 12/14/2022]  Open
15
The osnR gene of Corynebacterium glutamicum plays a negative regulatory role in oxidative stress responses. ACTA ACUST UNITED AC 2019;46:241-248. [DOI: 10.1007/s10295-018-02126-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2018] [Accepted: 12/20/2018] [Indexed: 11/26/2022]
16
Tomazou M, Barahona M, Polizzi KM, Stan GB. Computational Re-design of Synthetic Genetic Oscillators for Independent Amplitude and Frequency Modulation. Cell Syst 2018;6:508-520.e5. [PMID: 29680377 DOI: 10.1016/j.cels.2018.03.013] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2017] [Revised: 12/14/2017] [Accepted: 03/19/2018] [Indexed: 01/27/2023]
17
Specifically bound lambda repressor dimers promote adjacent non-specific binding. PLoS One 2018;13:e0194930. [PMID: 29608611 PMCID: PMC5880393 DOI: 10.1371/journal.pone.0194930] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2017] [Accepted: 03/13/2018] [Indexed: 01/01/2023]  Open
18
Kaur J, Kumar A, Kaur J. Strategies for optimization of heterologous protein expression in E. coli: Roadblocks and reinforcements. Int J Biol Macromol 2018;106:803-822. [DOI: 10.1016/j.ijbiomac.2017.08.080] [Citation(s) in RCA: 126] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2017] [Revised: 08/02/2017] [Accepted: 08/12/2017] [Indexed: 12/29/2022]
19
Kaur J, Kumar A, Kaur J. Strategies for optimization of heterologous protein expression in E. coli: Roadblocks and reinforcements. Int J Biol Macromol 2018. [DOI: 10.1016/j.ijbiomac.2017.08.080 10.1242/jeb.069716] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
20
Valle A, Hervis Y, Socas L, Canet L, Faheem M, Barbosa J, Lanio M, Pazos I. The multigene families of actinoporins (part II): Strategies for heterologous production in Escherichia coli. Toxicon 2016;118:64-81. [DOI: 10.1016/j.toxicon.2016.03.018] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2016] [Accepted: 03/24/2016] [Indexed: 11/26/2022]
21
Koberg S, Mohamed MDA, Faulhaber K, Neve H, Heller KJ. Identification and characterization of cis- and trans-acting elements involved in prophage induction in Streptococcus thermophilus J34. Mol Microbiol 2015;98:535-52. [PMID: 26193959 DOI: 10.1111/mmi.13140] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/17/2015] [Indexed: 11/29/2022]
22
Fricker AD, Peters JE. Vulnerabilities on the lagging-strand template: opportunities for mobile elements. Annu Rev Genet 2014;48:167-86. [PMID: 25195506 DOI: 10.1146/annurev-genet-120213-092046] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
23
Rosano GL, Ceccarelli EA. Recombinant protein expression in Escherichia coli: advances and challenges. Front Microbiol 2014;5:172. [PMID: 24860555 PMCID: PMC4029002 DOI: 10.3389/fmicb.2014.00172] [Citation(s) in RCA: 1299] [Impact Index Per Article: 129.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2013] [Accepted: 03/29/2014] [Indexed: 12/28/2022]  Open
24
Nassar FJ, Rahal EA, Sabra A, Matar GM. Effects of subinhibitory concentrations of antimicrobial agents on Escherichia coli O157:H7 Shiga toxin release and role of the SOS response. Foodborne Pathog Dis 2013;10:805-12. [PMID: 23808851 DOI: 10.1089/fpd.2013.1510] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
25
Busygina V, Gaines WA, Xu Y, Kwon Y, Williams GJ, Lin SW, Chang HY, Chi P, Wang HW, Sung P. Functional attributes of the Saccharomyces cerevisiae meiotic recombinase Dmc1. DNA Repair (Amst) 2013;12:707-12. [PMID: 23769192 DOI: 10.1016/j.dnarep.2013.05.004] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2013] [Revised: 05/15/2013] [Accepted: 05/17/2013] [Indexed: 01/10/2023]
26
Michel B, Leach D. Homologous Recombination-Enzymes and Pathways. EcoSal Plus 2012;5. [PMID: 26442826 DOI: 10.1128/ecosalplus.7.2.7] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2011] [Indexed: 06/05/2023]
27
Li Z, Stevens DL, Hamilton SM, Parimon T, Ma Y, Kearns AM, Ellis RW, Bryant AE. Fatal S. aureus hemorrhagic pneumonia: genetic analysis of a unique clinical isolate producing both PVL and TSST-1. PLoS One 2011;6:e27246. [PMID: 22110621 PMCID: PMC3207839 DOI: 10.1371/journal.pone.0027246] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2011] [Accepted: 10/12/2011] [Indexed: 02/02/2023]  Open
28
Adikesavan AK, Katsonis P, Marciano DC, Lua R, Herman C, Lichtarge O. Separation of recombination and SOS response in Escherichia coli RecA suggests LexA interaction sites. PLoS Genet 2011;7:e1002244. [PMID: 21912525 PMCID: PMC3164682 DOI: 10.1371/journal.pgen.1002244] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2011] [Accepted: 06/29/2011] [Indexed: 12/29/2022]  Open
29
Lemire S, Figueroa-Bossi N, Bossi L. Bacteriophage crosstalk: coordination of prophage induction by trans-acting antirepressors. PLoS Genet 2011;7:e1002149. [PMID: 21731505 PMCID: PMC3121763 DOI: 10.1371/journal.pgen.1002149] [Citation(s) in RCA: 80] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2011] [Accepted: 05/05/2011] [Indexed: 02/01/2023]  Open
30
Butala M, Klose D, Hodnik V, Rems A, Podlesek Z, Klare JP, Anderluh G, Busby SJW, Steinhoff HJ, Zgur-Bertok D. Interconversion between bound and free conformations of LexA orchestrates the bacterial SOS response. Nucleic Acids Res 2011;39:6546-57. [PMID: 21576225 PMCID: PMC3159453 DOI: 10.1093/nar/gkr265] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]  Open
31
Folded DNA in action: hairpin formation and biological functions in prokaryotes. Microbiol Mol Biol Rev 2011;74:570-88. [PMID: 21119018 DOI: 10.1128/mmbr.00026-10] [Citation(s) in RCA: 135] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
32
Song Q, Ye T, Zhang X. Proteins responsible for lysogeny of deep-sea thermophilic bacteriophage GVE2 at high temperature. Gene 2011;479:1-9. [PMID: 21303688 DOI: 10.1016/j.gene.2011.01.015] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2010] [Revised: 01/19/2011] [Accepted: 01/20/2011] [Indexed: 10/18/2022]
33
Comparative transcriptomic and phenotypic analysis of the responses of Bacillus cereus to various disinfectant treatments. Appl Environ Microbiol 2010;76:3352-60. [PMID: 20348290 DOI: 10.1128/aem.03003-09] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
34
Chia N, Golding I, Goldenfeld N. Lambda-prophage induction modeled as a cooperative failure mode of lytic repression. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009;80:030901. [PMID: 19905052 PMCID: PMC4038166 DOI: 10.1103/physreve.80.030901] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2008] [Indexed: 05/28/2023]
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