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Xie T, Foutz TJ, Adamek M, Swift JR, Inman CS, Manns JR, Leuthardt EC, Willie JT, Brunner P. Single-pulse electrical stimulation artifact removal using the novel matching pursuit-based artifact reconstruction and removal method (MPARRM). J Neural Eng 2023; 20:066036. [PMID: 38063368 PMCID: PMC10751949 DOI: 10.1088/1741-2552/ad1385] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Revised: 11/02/2023] [Accepted: 12/07/2023] [Indexed: 12/28/2023]
Abstract
Objective.Single-pulse electrical stimulation (SPES) has been widely used to probe effective connectivity. However, analysis of the neural response is often confounded by stimulation artifacts. We developed a novel matching pursuit-based artifact reconstruction and removal method (MPARRM) capable of removing artifacts from stimulation-artifact-affected electrophysiological signals.Approach.To validate MPARRM across a wide range of potential stimulation artifact types, we performed a bench-top experiment in which we suspended electrodes in a saline solution to generate 110 types of real-world stimulation artifacts. We then added the generated stimulation artifacts to ground truth signals (stereoelectroencephalography signals from nine human subjects recorded during a receptive speech task), applied MPARRM to the combined signal, and compared the resultant denoised signal with the ground truth signal. We further applied MPARRM to artifact-affected neural signals recorded from the hippocampus while performing SPES on the ipsilateral basolateral amygdala in nine human subjects.Main results.MPARRM could remove stimulation artifacts without introducing spectral leakage or temporal spread. It accommodated variable stimulation parameters and recovered the early response to SPES within a wide range of frequency bands. Specifically, in the early response period (5-10 ms following stimulation onset), we found that the broadband gamma power (70-170 Hz) of the denoised signal was highly correlated with the ground truth signal (R=0.98±0.02, Pearson), and the broadband gamma activity of the denoised signal faithfully revealed the responses to the auditory stimuli within the ground truth signal with94%±1.47%sensitivity and99%±1.01%specificity. We further found that MPARRM could reveal the expected temporal progression of broadband gamma activity along the anterior-posterior axis of the hippocampus in response to the ipsilateral amygdala stimulation.Significance.MPARRM could faithfully remove SPES artifacts without confounding the electrophysiological signal components, especially during the early-response period. This method can facilitate the understanding of the neural response mechanisms of SPES.
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Affiliation(s)
- Tao Xie
- Department of Neurosurgery, Washington University School of Medicine, St. Louis, MO, United States of America
- National Center for Adaptive Neurotechnologies, St. Louis, MO, United States of America
| | - Thomas J Foutz
- Department of Neurology, Washington University School of Medicine, St. Louis, MO, United States of America
| | - Markus Adamek
- National Center for Adaptive Neurotechnologies, St. Louis, MO, United States of America
- Department of Neuroscience, Washington University School of Medicine, St. Louis, MO, United States of America
| | - James R Swift
- Department of Neurosurgery, Washington University School of Medicine, St. Louis, MO, United States of America
- National Center for Adaptive Neurotechnologies, St. Louis, MO, United States of America
| | - Cory S Inman
- Department of Psychology, University of Utah, Salt Lake City, UT, United States of America
| | - Joseph R Manns
- Department of Psychology, Emory University, Atlanta, GA, United States of America
| | - Eric C Leuthardt
- Department of Neurosurgery, Washington University School of Medicine, St. Louis, MO, United States of America
| | - Jon T Willie
- Department of Neurosurgery, Washington University School of Medicine, St. Louis, MO, United States of America
- National Center for Adaptive Neurotechnologies, St. Louis, MO, United States of America
| | - Peter Brunner
- Department of Neurosurgery, Washington University School of Medicine, St. Louis, MO, United States of America
- National Center for Adaptive Neurotechnologies, St. Louis, MO, United States of America
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Towards fast approximations for the hypervolume indicator for multi-objective optimization problems by Genetic Programming. Appl Soft Comput 2022. [DOI: 10.1016/j.asoc.2022.109103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Kaleem M, Guergachi A, Krishnan S. Comparison of Empirical Mode Decomposition, Wavelets, and Different Machine Learning Approaches for Patient-Specific Seizure Detection Using Signal-Derived Empirical Dictionary Approach. Front Digit Health 2021; 3:738996. [PMID: 34966902 PMCID: PMC8710482 DOI: 10.3389/fdgth.2021.738996] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Accepted: 11/18/2021] [Indexed: 11/23/2022] Open
Abstract
Analysis of long-term multichannel EEG signals for automatic seizure detection is an active area of research that has seen application of methods from different domains of signal processing and machine learning. The majority of approaches developed in this context consist of extraction of hand-crafted features that are used to train a classifier for eventual seizure detection. Approaches that are data-driven, do not use hand-crafted features, and use small amounts of patients' historical EEG data for classifier training are few in number. The approach presented in this paper falls in the latter category, and is based on a signal-derived empirical dictionary approach, which utilizes empirical mode decomposition (EMD) and discrete wavelet transform (DWT) based dictionaries learned using a framework inspired by traditional methods of dictionary learning. Three features associated with traditional dictionary learning approaches, namely projection coefficients, coefficient vector and reconstruction error, are extracted from both EMD and DWT based dictionaries for automated seizure detection. This is the first time these features have been applied for automatic seizure detection using an empirical dictionary approach. Small amounts of patients' historical multi-channel EEG data are used for classifier training, and multiple classifiers are used for seizure detection using newer data. In addition, the seizure detection results are validated using 5-fold cross-validation to rule out any bias in the results. The CHB-MIT benchmark database containing long-term EEG recordings of pediatric patients is used for validation of the approach, and seizure detection performance comparable to the state-of-the-art is obtained. Seizure detection is performed using five classifiers, thereby allowing a comparison of the dictionary approaches, features extracted, and classifiers used. The best seizure detection performance is obtained using EMD based dictionary and reconstruction error feature and support vector machine classifier, with accuracy, sensitivity and specificity values of 88.2, 90.3, and 88.1%, respectively. Comparison is also made with other recent studies using the same database. The methodology presented in this paper is shown to be computationally efficient and robust for patient-specific automatic seizure detection. A data-driven methodology utilizing a small amount of patients' historical data is hence demonstrated as a practical solution for automatic seizure detection.
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Affiliation(s)
- Muhammad Kaleem
- Department of Electrical Engineering, University of Management and Technology, Lahore, Pakistan
| | - Aziz Guergachi
- Department of Information Technology Management, Ted Rogers School of Management, Ryerson University, Toronto, ON, Canada
| | - Sridhar Krishnan
- Department of Electrical, Computer and Biomedical Engineering, Ryerson University, Toronto, ON, Canada
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Raj R, Selvakumar J, Maik V. Smart automated heart health monitoring using photoplethysmography signal classification. ACTA ACUST UNITED AC 2020; 66:247-256. [PMID: 34062637 DOI: 10.1515/bmt-2020-0113] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2020] [Accepted: 12/03/2020] [Indexed: 11/15/2022]
Abstract
This paper proposes a smart, automated heart health-monitoring (SAHM) device using a single photoplethysmography (PPG) sensor that can monitor cardiac health. The SAHM uses an Orthogonal Matching Pursuit (OMP)-based classifier along with low-rank motion artifact removal as a pre-processing stage. Major contributions of the proposed SAHM device over existing state-of-the-art technologies include these factors: (i) the detection algorithm works with robust features extracted from a single PPG sensor; (ii) the motion compensation algorithm for the PPG signal can make the device wearable; and (iii) the real-time analysis of PPG input and sharing through the Internet. The proposed low-cost, compact and user-friendly PPG device can also be prototyped easily. The SAHM system was tested on three different datasets, and detailed performance analysis was carried out to show and prove the efficiency of the proposed algorithm.
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Affiliation(s)
- Remya Raj
- Department of Electronics and Communication Engineering, SRM Institute of Science and Technology, Kancheepuram, Tamil Nadu, India
| | - Jayakumar Selvakumar
- Department of Electronics and Communication Engineering, SRM Institute of Science and Technology, Kancheepuram, Tamil Nadu, India
| | - Vivek Maik
- Department of Electronics and Communication Engineering, SRM Institute of Science and Technology, Kancheepuram, Tamil Nadu, India
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Sharma R, Chopra K. EEG-based epileptic seizure detection using GPLV model and multi support vector machine. JOURNAL OF INFORMATION & OPTIMIZATION SCIENCES 2020. [DOI: 10.1080/02522667.2020.1715564] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Ruchi Sharma
- Departartment of Electrical and Electronics Engineering, GD Goenka University, Gurugram 122103, Haryana, India
| | - Khyati Chopra
- Departartment of Electrical and Electronics Engineering, GD Goenka University, Gurugram 122103, Haryana, India,
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International Federation of Clinical Neurophysiology (IFCN) – EEG research workgroup: Recommendations on frequency and topographic analysis of resting state EEG rhythms. Part 1: Applications in clinical research studies. Clin Neurophysiol 2020; 131:285-307. [DOI: 10.1016/j.clinph.2019.06.234] [Citation(s) in RCA: 94] [Impact Index Per Article: 23.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2017] [Revised: 05/17/2019] [Accepted: 06/02/2019] [Indexed: 01/22/2023]
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Zarei R, He J, Siuly S, Huang G, Zhang Y. Exploring Douglas-Peucker Algorithm in the Detection of Epileptic Seizure from Multicategory EEG Signals. BIOMED RESEARCH INTERNATIONAL 2019; 2019:5173589. [PMID: 31360715 PMCID: PMC6642761 DOI: 10.1155/2019/5173589] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/24/2019] [Accepted: 06/16/2019] [Indexed: 11/17/2022]
Abstract
Discovering the concealed patterns of Electroencephalogram (EEG) signals is a crucial part in efficient detection of epileptic seizures. This study develops a new scheme based on Douglas-Peucker algorithm (DP) and principal component analysis (PCA) for extraction of representative and discriminatory information from epileptic EEG data. As the multichannel EEG signals are highly correlated and are in large volumes, the DP algorithm is applied to extract the most representative samples from EEG data. The PCA is utilised to produce uncorrelated variables and to reduce the dimensionality of the DP samples for better recognition. To verify the robustness of the proposed method, four machine learning techniques, random forest classifier (RF), k-nearest neighbour algorithm (k-NN), support vector machine (SVM), and decision tree classifier (DT), are employed on the obtained features. Furthermore, we assess the performance of the proposed methods by comparing it with some recently reported algorithms. The experimental results show that the DP technique effectively extracts the representative samples from EEG signals compressing up to over 47% sample points of EEG signals. The results also indicate that the proposed feature method with the RF classifier achieves the best performance and yields 99.85% of the overall classification accuracy (OCA). The proposed method outperforms the most recently reported methods in terms of OCA in the same epileptic EEG database.
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Affiliation(s)
- Roozbeh Zarei
- Ningbo Institute of Materials Technology & Engineering, Chinese Academy of Sciences, Ningbo, China
- School of Information Technology, Deakin University, Melbourne, Australia
| | - Jing He
- Institute of Information Technology, Nanjing University of Finance and Economics, Nanjing, China
- Swinburne Data Science Research Institute, Swinburne University of Technology, Melbourne, Australia
| | - Siuly Siuly
- Institute for Sustainable Industries & Liveable Cities, Victoria University, Melbourne, Australia
| | - Guangyan Huang
- School of Information Technology, Deakin University, Melbourne, Australia
| | - Yanchun Zhang
- Institute for Sustainable Industries & Liveable Cities, Victoria University, Melbourne, Australia
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Multivariate Matching Pursuit Decomposition and Normalized Gabor Entropy for Quantification of Preictal Trends in Epilepsy. ENTROPY 2018; 20:e20060419. [PMID: 33265509 PMCID: PMC7512937 DOI: 10.3390/e20060419] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/01/2018] [Revised: 05/20/2018] [Accepted: 05/26/2018] [Indexed: 12/02/2022]
Abstract
Quantification of the complexity of signals recorded concurrently from multivariate systems, such as the brain, plays an important role in the study and characterization of their state and state transitions. Multivariate analysis of the electroencephalographic signals (EEG) over time is conceptually most promising in unveiling the global dynamics of dynamical brain disorders such as epilepsy. We employed a novel methodology to study the global complexity of the epileptic brain en route to seizures. The developed measures of complexity were based on Multivariate Matching Pursuit (MMP) decomposition of signals in terms of time–frequency Gabor functions (atoms) and Shannon entropy. The measures were first validated on simulation data (Lorenz system) and then applied to EEGs from preictal (before seizure onsets) periods, recorded by intracranial electrodes from eight patients with temporal lobe epilepsy and a total of 42 seizures, in search of global trends of complexity before seizures onset. Out of five Gabor measures of complexity we tested, we found that our newly defined measure, the normalized Gabor entropy (NGE), was able to detect statistically significant (p < 0.05) nonlinear trends of the mean global complexity across all patients over 1 h periods prior to seizures’ onset. These trends pointed to a slow decrease of the epileptic brain’s global complexity over time accompanied by an increase of the variance of complexity closer to seizure onsets. These results show that the global complexity of the epileptic brain decreases at least 1 h prior to seizures and imply that the employed methodology and measures could be useful in identifying different brain states, monitoring of seizure susceptibility over time, and potentially in seizure prediction.
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