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Yim A, Alberto M, Sharma V, Green A, Mclean A, du Plessis J, Wong LM, Wood B, Ischia J, Raman J, Bolton D. Near-infrared spectroscopy as a novel method of ex vivo bladder cancer tissue characterisation. BJU Int 2024; 133 Suppl 4:44-52. [PMID: 38238965 DOI: 10.1111/bju.16226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/17/2024]
Abstract
OBJECTIVE To evaluate near-infrared (NIR) spectroscopy in differentiating between benign and malignant bladder pathologies ex vivo immediately after resection, including the grade and stage of malignancy. PATIENTS AND METHODS A total of 355 spectra were measured on 71 bladder specimens from patients undergoing transurethral resection of bladder tumour (TURBT) between April and August 2022. Scan time was 5 s, undertaken using a portable NIR spectrometer within 10 min from excision. Specimens were then sent for routine histopathological correlation. Machine learning models were applied to the spectral dataset to construct diagnostic algorithms; these were then tested for their ability to predict the histological diagnosis of each sample using its NIR spectrum. RESULTS A two-group algorithm comparing low- vs high-grade urothelial cancer demonstrated 97% sensitivity, 99% specificity, and the area under the receiver operating characteristic curve (AUC) was 0.997. A three-group algorithm predicting stages Ta vs T1 vs T2 achieved 97% sensitivity, 92% specificity, and the AUC was 0.996. CONCLUSIONS This first study evaluating the diagnostic potential of NIR spectroscopy in urothelial cancer shows that it can be accurately used to assess tissue in an ex vivo setting immediately after TURBT. This offers point-of-care assessment of bladder pathology, with potential to influence the extent of resection, reducing both the need for re-resection where invasive disease may be suspected, and also the potential for complications where extent of diagnostic resection can be limited. Further studies utilising fibre-optic probes offer the potential for in vivo assessment.
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Affiliation(s)
- Arthur Yim
- Department of Urology, Austin Health, Heidelberg, Victoria, Australia
- Young Urology Researchers Organisation (YURO), Melbourne, Victoria, Australia
| | - Matthew Alberto
- Department of Urology, Austin Health, Heidelberg, Victoria, Australia
| | - Varun Sharma
- Department of Cardiac Surgery, Austin Health, Heidelberg, Victoria, Australia
- Department of Surgery, University of Melbourne, Melbourne, Victoria, Australia
- Spectromix Lab, Melbourne, Victoria, Australia
| | - Alexander Green
- Centre for Biospectroscopy, Monash University, Clayton, Victoria, Australia
| | - Aaron Mclean
- Centre for Biospectroscopy, Monash University, Clayton, Victoria, Australia
| | - Justin du Plessis
- Department of Anatomical Pathology, Austin Health, Heidelberg, Victoria, Australia
| | - Lih-Ming Wong
- Department of Urology, Austin Health, Heidelberg, Victoria, Australia
| | - Bayden Wood
- Spectromix Lab, Melbourne, Victoria, Australia
- Centre for Biospectroscopy, Monash University, Clayton, Victoria, Australia
| | - Joseph Ischia
- Department of Urology, Austin Health, Heidelberg, Victoria, Australia
| | - Jaishankar Raman
- Department of Cardiac Surgery, Austin Health, Heidelberg, Victoria, Australia
- Department of Surgery, University of Melbourne, Melbourne, Victoria, Australia
- Spectromix Lab, Melbourne, Victoria, Australia
| | - Damien Bolton
- Department of Urology, Austin Health, Heidelberg, Victoria, Australia
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2
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Khan B, Nippolainen E, Shahini F, Torniainen J, Mikkonen S, Nonappa, Popov A, Töyräs J, Afara IO. Refractive index of human articular cartilage varies with tissue structure and composition. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2023; 40:2205-2214. [PMID: 38086029 DOI: 10.1364/josaa.498722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Accepted: 10/19/2023] [Indexed: 12/18/2023]
Abstract
Optical properties of biological tissues, such as refractive index, are fundamental properties, intrinsically linked to a tissue's composition and structure. This study aims to investigate the variation of refractive index (RI) of human articular cartilage along the tissue depth (via collagen fibril orientation and optical density) and integrity (based on Mankin and Osteoarthritis Research Society International (OARSI) scores). The results show the relationship between RI and PG content (p=0.042), collagen orientation (p=0.037), and OARSI score (p=0.072). When taken into account, the outcome of this study suggests that the RI of healthy cartilage differs from that of pathological cartilage (p=0.072). This could potentially provide knowledge on how progressive tissue degeneration, such as osteoarthritis, affects changes in cartilage RI, which can, in turn, be used as a potential optical biomarker of tissue pathology.
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3
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Nazarov DA, Denisenko GM, Budylin GS, Kozlova EA, Lipina MM, Lazarev VA, Shirshin EA, Tarabrin MK. Diffuse reflectance spectroscopy of the cartilage tissue in the fourth optical window. BIOMEDICAL OPTICS EXPRESS 2023; 14:1509-1521. [PMID: 37078039 PMCID: PMC10110295 DOI: 10.1364/boe.483135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 02/08/2023] [Accepted: 02/27/2023] [Indexed: 05/03/2023]
Abstract
Studies of the optical properties of biological tissues in the infrared range have demonstrated significant potential for diagnostic tasks. One of the insufficiently explored ranges for diagnostic problems at the moment is the fourth transparency window, or short wavelength infrared region II (SWIR II). A Cr2+:ZnSe laser with tuning capability in the range from 2.1 to 2.4 µm was developed to explore the possibilities in this region. The capability of diffuse reflectance spectroscopy to analyze water and collagen content in biosamples was investigated using the optical gelatin phantoms and the cartilage tissue samples during their drying process. It was demonstrated that decomposition components of the optical density spectra correlated with the partial content of the collagen and water in the samples. The present study indicates the possibility of using this spectral range for the development of diagnostic methods, in particular, for observation of the changes in the content of cartilage tissue components in degenerative diseases such as osteoarthritis.
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Affiliation(s)
| | - Georgy M. Denisenko
- Bauman Moscow State Technical University, Moscow, 105005, Russia
- Institute for Regenerative Medicine, Sechenov First Moscow State Medical University (Sechenov University), Moscow 119991, Russia
- Laboratory of Clinical Biophotonics, Biomedical Science and Technology Park, Sechenov First Moscow State Medical University, 119048 Moscow, Russia
| | - Gleb S. Budylin
- Laboratory of Clinical Biophotonics, Biomedical Science and Technology Park, Sechenov First Moscow State Medical University, 119048 Moscow, Russia
| | | | - Marina M. Lipina
- Department of Trauma, Orthopedics and Disaster Surgery, Sechenov First Moscow State Medical University, Moscow 119991, Russia
| | - Vladimir A. Lazarev
- Bauman Moscow State Technical University, Moscow, 105005, Russia
- World-Class Research Center Digital Biodesign and Personalized Healthcare, Sechenov First Moscow State Medical University, 119048 Moscow, Russia
| | - Evgeny A. Shirshin
- Laboratory of Clinical Biophotonics, Biomedical Science and Technology Park, Sechenov First Moscow State Medical University, 119048 Moscow, Russia
- Faculty of Physics, M.V. Lomonosov Moscow State University, Moscow 119991, Russia
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4
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Sarin JK, Kiema M, Luoto ES, Husso A, Hedman M, Laakkonen JP, Torniainen J. Nondestructive Evaluation of Mechanical and Histological Properties of the Human Aorta With Near-Infrared Spectroscopy. J Surg Res 2023; 287:82-89. [PMID: 36870305 DOI: 10.1016/j.jss.2023.01.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Revised: 12/19/2022] [Accepted: 01/28/2023] [Indexed: 03/06/2023]
Abstract
INTRODUCTION Ascending aortic dilatation is a well-known risk factor for aortic rupture. Indications for aortic replacement in its dilatation concomitant to other open-heart surgery exist; however, cut-off values based solely on aortic diameter may fail to identify patients with weakened aortic tissue. We introduce near-infrared spectroscopy (NIRS) as a diagnostic tool to nondestructively evaluate the structural and compositional properties of the human ascending aorta during open-heart surgeries. During open-heart surgery, NIRS could provide information regarding tissue viability in situ and thus contribute to the decision of optimal surgical repair. MATERIALS AND METHODS Samples were collected from patients with ascending aortic aneurysm (n = 23) undergoing elective aortic reconstruction surgery and from healthy subjects (n = 4). The samples were subjected to spectroscopic measurements, biomechanical testing, and histological analysis. The relationship between the near-infrared spectra and biomechanical and histological properties was investigated by adapting partial least squares regression. RESULTS Moderate prediction performance was achieved with biomechanical properties (r = 0.681, normalized root-mean-square error of cross-validation = 17.9%) and histological properties (r = 0.602, normalized root-mean-square error of cross-validation = 22.2%). Especially the performance with parameters describing the aorta's ultimate strength, for example, failure strain (r = 0.658), and elasticity (phase difference, r = 0.875) were promising and could, therefore, provide quantitative information on the rupture sensitivity of the aorta. For the estimation of histological properties, the results with α-smooth muscle actin (r = 0.581), elastin density (r = 0.973), mucoid extracellular matrix accumulation(r = 0.708), and media thickness (r = 0.866) were promising. CONCLUSIONS NIRS could be a potential technique for in situ evaluation of biomechanical and histological properties of human aorta and therefore useful in patient-specific treatment planning.
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Affiliation(s)
- Jaakko K Sarin
- Department of Medical Physics, Medical Imaging Center, Tampere University Hospital, Tampere, Finland; Department of Radiology, Tampere University Hospital, Tampere, Finland; Department of Technical Physics, University of Eastern Finland, Kuopio, Finland.
| | - Miika Kiema
- A.I. Virtanen Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland
| | - Emma-Sofia Luoto
- A.I. Virtanen Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland
| | - Annastiina Husso
- Department of Cardiothoracic Surgery, Kuopio University Hospital, Kuopio, Finland
| | - Marja Hedman
- Department of Cardiothoracic Surgery, Kuopio University Hospital, Kuopio, Finland; Department of Clinical Radiology, Kuopio University Hospital, Kuopio, Finland; Institute of Clinical Medicine, University of Eastern Finland, Kuopio, Finland
| | - Johanna P Laakkonen
- A.I. Virtanen Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland
| | - Jari Torniainen
- Department of Technical Physics, University of Eastern Finland, Kuopio, Finland; School of Information Technology & Electrical Engineering, The University of Queensland, Brisbane, Australia
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Rovnyagina NR, Budylin GS, Dyakonov PV, Efremov YM, Lipina MM, Goncharuk YR, Murdalov EE, Pogosyan DA, Davydov DA, Korneev AA, Serejnikova NB, Mikaelyan KA, Evlashin SA, Lazarev VA, Lychagin AV, Timashev PS, Shirshin EA. Grading cartilage damage with diffuse reflectance spectroscopy: Optical markers and mechanical properties. JOURNAL OF BIOPHOTONICS 2023; 16:e202200149. [PMID: 36066126 DOI: 10.1002/jbio.202200149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Revised: 08/01/2022] [Accepted: 08/29/2022] [Indexed: 06/15/2023]
Abstract
Osteoarthritis (OA) is one of the most common joint diseases worldwide. Unfortunately, clinical methods lack the ability to detect OA in the early stages. Timely detection of the knee joint degradation at the level of tissue changes can prevent its progressive damage. Here, diffuse reflectance spectroscopy (DRS) in the NIR range was used to obtain optical markers of the cartilage damage grades and to assess its mechanical properties. It was observed that the water content obtained by DRS strongly correlates with the cartilage thickness (R = .82) and viscoelastic relaxation time (R = .7). Moreover, the spectral parameters, including water content (OH-band), protein content (CH-band), and scattering parameters allowed for discrimination between the cartilage damage grades (10-4 < P ≤ 10-3 ). The developed approach may become a valuable addition to arthroscopy, helping to identify lesions at the microscopic level in the early stages of OA and complement the surgical analysis.
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Affiliation(s)
- Nataliya R Rovnyagina
- Laboratory of Clinical Biophotonics, Biomedical Science and Technology Park, Sechenov First Moscow State Medical University, Moscow, Russia
| | - Gleb S Budylin
- Laboratory of Clinical Biophotonics, Biomedical Science and Technology Park, Sechenov First Moscow State Medical University, Moscow, Russia
| | - Pavel V Dyakonov
- Laboratory of Clinical Biophotonics, Biomedical Science and Technology Park, Sechenov First Moscow State Medical University, Moscow, Russia
- Center for Materials Technologies, Skolkovo Institute of Science and Technology, Moscow, Russia
| | - Yuri M Efremov
- Institute for Regenerative Medicine, Sechenov First Moscow State Medical University, Moscow, Russia
- World-Class Research Center "Digital Biodesign and Personalized Healthcare", Sechenov First Moscow State Medical University, Moscow, Russia
| | - Marina M Lipina
- Department of Trauma, Orthopedics and Disaster Surgery, Sechenov First Moscow State Medical University, Moscow, Russia
- Laboratory of Clinical Smart Nanotechnologies, Sechenov First Moscow State Medical University, Moscow, Russia
| | - Yuliya R Goncharuk
- Department of Trauma, Orthopedics and Disaster Surgery, Sechenov First Moscow State Medical University, Moscow, Russia
| | - Emirkhan E Murdalov
- Department of Trauma, Orthopedics and Disaster Surgery, Sechenov First Moscow State Medical University, Moscow, Russia
| | - David A Pogosyan
- Department of Trauma, Orthopedics and Disaster Surgery, Sechenov First Moscow State Medical University, Moscow, Russia
| | - Denis A Davydov
- Laboratory of Clinical Biophotonics, Biomedical Science and Technology Park, Sechenov First Moscow State Medical University, Moscow, Russia
- Faculty of Physics, M.V. Lomonosov Moscow State University, Moscow, Russia
| | - Alexander A Korneev
- N.V. Sklifosovskiy Institute of Clinical Medicine, Sechenov First Moscow State Medical University, Moscow, Russia
| | - Natalia B Serejnikova
- Institute for Regenerative Medicine, Sechenov First Moscow State Medical University, Moscow, Russia
| | - Karen A Mikaelyan
- Institute for Regenerative Medicine, Sechenov First Moscow State Medical University, Moscow, Russia
| | - Stanislav A Evlashin
- Center for Materials Technologies, Skolkovo Institute of Science and Technology, Moscow, Russia
| | - Vladimir A Lazarev
- Institute for Regenerative Medicine, Sechenov First Moscow State Medical University, Moscow, Russia
- Bauman Moscow State Technical University, Moscow, Russia
| | - Alexey V Lychagin
- Department of Trauma, Orthopedics and Disaster Surgery, Sechenov First Moscow State Medical University, Moscow, Russia
- Laboratory of Clinical Smart Nanotechnologies, Sechenov First Moscow State Medical University, Moscow, Russia
| | - Peter S Timashev
- Institute for Regenerative Medicine, Sechenov First Moscow State Medical University, Moscow, Russia
- World-Class Research Center "Digital Biodesign and Personalized Healthcare", Sechenov First Moscow State Medical University, Moscow, Russia
- Chemistry Department, Lomonosov Moscow State University, Moscow, Russia
| | - Evgeny A Shirshin
- Laboratory of Clinical Biophotonics, Biomedical Science and Technology Park, Sechenov First Moscow State Medical University, Moscow, Russia
- Faculty of Physics, M.V. Lomonosov Moscow State University, Moscow, Russia
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6
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Sarin JK, Prakash M, Shaikh R, Torniainen J, Joukainen A, Kröger H, Afara IO, Töyräs J. Near-Infrared Spectroscopy Enables Arthroscopic Histologic Grading of Human Knee Articular Cartilage. Arthrosc Sports Med Rehabil 2022; 4:e1767-e1775. [PMID: 36312728 PMCID: PMC9596902 DOI: 10.1016/j.asmr.2022.07.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Accepted: 07/01/2022] [Indexed: 11/03/2022] Open
Abstract
Purpose To develop the means to estimate cartilage histologic grades and proteoglycan content in ex vivo arthroscopy using near-infrared spectroscopy (NIRS). Methods In this experimental study, arthroscopic NIR spectral measurements were performed on both knees of 9 human cadavers, followed by osteochondral block extraction and in vitro measurements: reacquisition of spectra and reference measurements (proteoglycan content, and three histologic scores). A hybrid model, combining principal component analysis and linear mixed-effects model (PCA-LME), was trained for each reference to investigate its relationship with in vitro NIR spectra. The performance of the PCA-LME model was validated with ex vivo spectra before and after the exclusion of outlying spectra. Model performance was evaluated based on Spearman rank correlation (ρ) and root-mean-square error (RMSE). Results The PCA-LME models performed well (independent test: average ρ = 0.668, RMSE = 0.892, P < .001) in the prediction of the reference measurements based on in vitro data. The performance on ex vivo arthroscopic data was poorer but improved substantially after outlier exclusion (independent test: average ρ = 0.462 to 0.614, RMSE = 1.078 to 0.950, P = .019 to .008). Conclusions NIRS is capable of nondestructive evaluation of cartilage integrity (i.e., histologic scores and proteoglycan content) under similar conditions as in clinical arthroscopy. Clinical Relevance There are clear clinical benefits to the accurate assessment of cartilage lesions in arthroscopy. Visual grading is the current standard of care. However, optical techniques, such as NIRS, may provide a more objective assessment of cartilage damage.
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Affiliation(s)
- Jaakko K. Sarin
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
- Department of Medical Physics, Medical Imaging Center, Pirkanmaa Hospital District, Tampere, Finland
| | - Mithilesh Prakash
- A.I. Virtanen Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland
| | - Rubina Shaikh
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
| | - Jari Torniainen
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
| | - Antti Joukainen
- Department of Orthopedics, Traumatology and Hand Surgery, Kuopio University Hospital, Kuopio, Finland
| | - Heikki Kröger
- Department of Orthopedics, Traumatology and Hand Surgery, Kuopio University Hospital, Kuopio, Finland
| | - Isaac O. Afara
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
- School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, Australia
| | - Juha Töyräs
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
- School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, Australia
- Science Service Center, Kuopio University Hospital, Kuopio, Finland
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7
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Kandel S, Querido W, Falcon JM, Zlotnick HM, Locke RC, Stoeckl B, Patel JM, Patil CA, Mauck RL, Pleshko N. In Situ Assessment of Porcine Osteochondral Repair Tissue in the Visible-Near Infrared Spectral Region. Front Bioeng Biotechnol 2022; 10:885369. [PMID: 36082171 PMCID: PMC9445125 DOI: 10.3389/fbioe.2022.885369] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Accepted: 06/13/2022] [Indexed: 11/13/2022] Open
Abstract
Standard assessment of cartilage repair progression by visual arthroscopy can be subjective and may result in suboptimal evaluation. Visible-near infrared (Vis-NIR) fiber optic spectroscopy of joint tissues, including articular cartilage and subchondral bone, provides an objective approach for quantitative assessment of tissue composition. Here, we applied this technique in the 350-2,500 nm spectral region to identify spectral markers of osteochondral tissue during repair with the overarching goal of developing a new approach to monitor repair of cartilage defects in vivo. Full thickness chondral defects were created in Yucatan minipigs using a 5-mm biopsy punch, and microfracture (MFx) was performed as a standard technique to facilitate repair. Tissues were evaluated at 1 month (in adult pigs) and 3 months (in juvenile pigs) post-surgery by spectroscopy and histology. After euthanasia, Vis-NIR spectra were collected in situ from the defect region. Additional spectroscopy experiments were carried out in vitro to aid in spectral interpretation. Osteochondral tissues were dissected from the joint and evaluated using the conventional International Cartilage Repair Society (ICRS) II histological scoring system, which showed lower scores for the 1-month than the 3-month repair tissues. In the visible spectral region, hemoglobin absorbances at 540 and 570 nm were significantly higher in spectra from 1-month repair tissue than 3-month repair tissue, indicating a reduction of blood in the more mature repair tissue. In the NIR region, we observed qualitative differences between the two groups in spectra taken from the defect, but differences did not reach significance. Furthermore, spectral data also indicated that the hydrated environment of the joint tissue may interfere with evaluation of tissue water absorbances in the NIR region. Together, these data provide support for further investigation of the visible spectral region for assessment of longitudinal repair of cartilage defects, which would enable assessment during routine arthroscopy, particularly in a hydrated environment.
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Affiliation(s)
- Shital Kandel
- Department of Bioengineering, Temple University, Philadelphia, PA, United States
| | - William Querido
- Department of Bioengineering, Temple University, Philadelphia, PA, United States
| | - Jessica M. Falcon
- Department of Bioengineering, Temple University, Philadelphia, PA, United States
| | - Hannah M. Zlotnick
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, United States
| | - Ryan C. Locke
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, United States
| | - Brendan Stoeckl
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, United States
| | - Jay M. Patel
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, United States
- Department of Orthopedics, Emory University, Atlanta, GA, United States
| | - Chetan A. Patil
- Department of Bioengineering, Temple University, Philadelphia, PA, United States
| | - Robert L. Mauck
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, United States
| | - Nancy Pleshko
- Department of Bioengineering, Temple University, Philadelphia, PA, United States
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8
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Cui A, Nippolainen E, Shaikh R, Torniainen J, Ristaniemi A, Finnilä M, Korhonen RK, Saarakkala S, Herzog W, Töyräs J, Afara IO. Assessment of Ligament Viscoelastic Properties Using Raman Spectroscopy. Ann Biomed Eng 2022; 50:1134-1142. [PMID: 35802206 PMCID: PMC9363474 DOI: 10.1007/s10439-022-02988-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Accepted: 05/31/2022] [Indexed: 11/01/2022]
Abstract
Injuries to the ligaments of the knee commonly impact vulnerable and physically active individuals. These injuries can lead to the development of degenerative diseases such as post-traumatic osteoarthritis (PTOA). Non-invasive optical modalities, such as infrared and Raman spectroscopy, provide means for quantitative evaluation of knee joint tissues and have been proposed as potential quantitative diagnostic tools for arthroscopy. In this study, we evaluate Raman spectroscopy as a viable tool for estimating functional properties of collateral ligaments. Artificial trauma was induced by anterior cruciate ligament transection (ACLT) in the left or right knee joint of skeletally mature New Zealand rabbits. The corresponding contralateral (CL) samples were extracted from healthy unoperated joints along with a separate group of control (CNTRL) animals. The rabbits were sacrificed at 8 weeks after ACLT. The ligaments were then harvested and measured using Raman spectroscopy. A uniaxial tensile stress-relaxation testing protocol was adopted for determining several biomechanical properties of the samples. Partial least squares (PLS) regression models were then employed to correlate the spectral data with the biomechanical properties. Results show that the capacity of Raman spectroscopy for estimating the biomechanical properties of the ligament samples varies depending on the target property, with prediction error ranging from 15.78% for tissue cross-sectional area to 30.39% for stiffness. The hysteresis under cyclic loading at 2 Hz (RMSE = 6.22%, Normalized RMSE = 22.24%) can be accurately estimated from the Raman data which describes the viscous damping properties of the tissue. We conclude that Raman spectroscopy has the potential for non-destructively estimating ligament biomechanical properties in health and disease, thus enhancing the diagnostic value of optical arthroscopic evaluations of ligament integrity.
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Affiliation(s)
- Andy Cui
- School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, Australia.
| | - Ervin Nippolainen
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
| | - Rubina Shaikh
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland.,Department of Orthopedics, Traumatology and Hand Surgery, Kuopio University Hospital, Kuopio, Finland
| | - Jari Torniainen
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
| | - Aapo Ristaniemi
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland.,AO Research Institute Davos, Davos, Switzerland
| | - Mikko Finnilä
- Research Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Rami K Korhonen
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
| | - Simo Saarakkala
- Research Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland.,Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
| | - Walter Herzog
- Human Performance Lab, Faculty of Kinesiology, University of Calgary, Calgary, Canada
| | - Juha Töyräs
- School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, Australia.,Department of Applied Physics, University of Eastern Finland, Kuopio, Finland.,Science Service Center, Kuopio University Hospital, Kuopio, Finland
| | - Isaac O Afara
- School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, Australia.,Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
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9
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Kroupa KR, Wu MI, Zhang J, Jensen M, Wong W, Engiles JB, Schaer TP, Grinstaff MW, Snyder BD, Bergholt MS, Albro MB. Raman needle arthroscopy for in vivo molecular assessment of cartilage. J Orthop Res 2022; 40:1338-1348. [PMID: 34370873 PMCID: PMC9291802 DOI: 10.1002/jor.25155] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 05/27/2021] [Accepted: 07/30/2021] [Indexed: 02/04/2023]
Abstract
The development of treatments for osteoarthritis (OA) is burdened by the lack of standardized biomarkers of cartilage health that can be applied in clinical trials. We present a novel arthroscopic Raman probe that can "optically biopsy" cartilage and quantify key extracellular matrix (ECM) biomarkers for determining cartilage composition, structure, and material properties in health and disease. Technological and analytical innovations to optimize Raman analysis include (1) multivariate decomposition of cartilage Raman spectra into ECM-constituent-specific biomarkers (glycosaminoglycan [GAG], collagen [COL], water [H2 O] scores), and (2) multiplexed polarized Raman spectroscopy to quantify superficial zone (SZ) COL anisotropy via a partial least squares-discriminant analysis-derived Raman collagen alignment factor (RCAF). Raman measurements were performed on a series of ex vivo cartilage models: (1) chemically GAG-depleted bovine cartilage explants (n = 40), (2) mechanically abraded bovine cartilage explants (n = 30), (3) aging human cartilage explants (n = 14), and (4) anatomical-site-varied ovine osteochondral explants (n = 6). Derived Raman GAG score biomarkers predicted 95%, 66%, and 96% of the variation in GAG content of GAG-depleted bovine explants, human explants, and ovine explants, respectively (p < 0.001). RCAF values were significantly different for explants with abrasion-induced SZ COL loss (p < 0.001). The multivariate linear regression of Raman-derived ECM biomarkers (GAG and H2 O scores) predicted 94% of the variation in elastic modulus of ovine explants (p < 0.001). Finally, we demonstrated the first in vivo Raman arthroscopy assessment of an ovine femoral condyle through intraarticular entry into the synovial capsule. This study advances Raman arthroscopy toward a transformative low-cost, minimally invasive diagnostic platform for objective monitoring of treatment outcomes from emerging OA therapies.
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Affiliation(s)
- Kimberly R. Kroupa
- Department of Mechanical EngineeringBoston UniversityBostonMassachusettsUSA
| | - Man I Wu
- Department of Mechanical EngineeringBoston UniversityBostonMassachusettsUSA
| | - Juncheng Zhang
- Department of Biomedical EngineeringBoston UniversityBostonMassachusettsUSA
| | - Magnus Jensen
- Department of Craniofacial Development & Stem Cell BiologyKings CollegeLondonUK
| | - Wei Wong
- Department of Mechanical EngineeringBoston UniversityBostonMassachusettsUSA
| | - Julie B. Engiles
- Department of Pathobiology, New Bolton CenterUniversity of PennsylvaniaKennett SquarePennsylvaniaUSA
| | - Thomas P. Schaer
- Department of Clinical Studies, New Bolton CenterSchool of Veterinary Medicine, University of PennsylvaniaPhiladelphiaPennsylvaniaUSA
| | - Mark W. Grinstaff
- Department of Biomedical EngineeringBoston UniversityBostonMassachusettsUSA,Division of Materials Science & EngineeringBoston UniversityBostonMassachusettsUSA
| | - Brian D. Snyder
- Department of Orthopaedic SurgeryBoston Children's HospitalBostonMassachusettsUSA
| | - Mads S. Bergholt
- Department of Craniofacial Development & Stem Cell BiologyKings CollegeLondonUK
| | - Michael B. Albro
- Department of Mechanical EngineeringBoston UniversityBostonMassachusettsUSA,Division of Materials Science & EngineeringBoston UniversityBostonMassachusettsUSA
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10
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Rehman HU, Tafintseva V, Zimmermann B, Solheim JH, Virtanen V, Shaikh R, Nippolainen E, Afara I, Saarakkala S, Rieppo L, Krebs P, Fomina P, Mizaikoff B, Kohler A. Preclassification of Broadband and Sparse Infrared Data by Multiplicative Signal Correction Approach. Molecules 2022; 27:2298. [PMID: 35408697 PMCID: PMC9000438 DOI: 10.3390/molecules27072298] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Revised: 03/28/2022] [Accepted: 03/30/2022] [Indexed: 02/04/2023] Open
Abstract
Preclassification of raw infrared spectra has often been neglected in scientific literature. Separating spectra of low spectral quality, due to low signal-to-noise ratio, presence of artifacts, and low analyte presence, is crucial for accurate model development. Furthermore, it is very important for sparse data, where it becomes challenging to visually inspect spectra of different natures. Hence, a preclassification approach to separate infrared spectra for sparse data is needed. In this study, we propose a preclassification approach based on Multiplicative Signal Correction (MSC). The MSC approach was applied on human and the bovine knee cartilage broadband Fourier Transform Infrared (FTIR) spectra and on a sparse data subset comprising of only seven wavelengths. The goal of the preclassification was to separate spectra with analyte-rich signals (i.e., cartilage) from spectra with analyte-poor (and high-matrix) signals (i.e., water). The human datasets 1 and 2 contained 814 and 815 spectra, while the bovine dataset contained 396 spectra. A pure water spectrum was used as a reference spectrum in the MSC approach. A threshold for the root mean square error (RMSE) was used to separate cartilage from water spectra for broadband and the sparse spectral data. Additionally, standard noise-to-ratio and principle component analysis were applied on broadband spectra. The fully automated MSC preclassification approach, using water as reference spectrum, performed as well as the manual visual inspection. Moreover, it enabled not only separation of cartilage from water spectra in broadband spectral datasets, but also in sparse datasets where manual visual inspection cannot be applied.
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Affiliation(s)
- Hafeez Ur Rehman
- Faculty of Science and Technology, Norwegian University of Life Sciences, 1430 Ås, Norway; (V.T.); (B.Z.); (J.H.S.); (A.K.)
| | - Valeria Tafintseva
- Faculty of Science and Technology, Norwegian University of Life Sciences, 1430 Ås, Norway; (V.T.); (B.Z.); (J.H.S.); (A.K.)
| | - Boris Zimmermann
- Faculty of Science and Technology, Norwegian University of Life Sciences, 1430 Ås, Norway; (V.T.); (B.Z.); (J.H.S.); (A.K.)
| | - Johanne Heitmann Solheim
- Faculty of Science and Technology, Norwegian University of Life Sciences, 1430 Ås, Norway; (V.T.); (B.Z.); (J.H.S.); (A.K.)
| | - Vesa Virtanen
- Research Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, 90570 Oulu, Finland; (V.V.); (S.S.); (L.R.)
| | - Rubina Shaikh
- Department of Applied Physics, University of Eastern Finland, 70210 Kuopio, Finland; (R.S.); (E.N.); (I.A.)
- Department of Orthopedics, Traumatology, Hand Surgery, Kuopio University Hospital, 70210 Kuopio, Finland
| | - Ervin Nippolainen
- Department of Applied Physics, University of Eastern Finland, 70210 Kuopio, Finland; (R.S.); (E.N.); (I.A.)
| | - Isaac Afara
- Department of Applied Physics, University of Eastern Finland, 70210 Kuopio, Finland; (R.S.); (E.N.); (I.A.)
| | - Simo Saarakkala
- Research Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, 90570 Oulu, Finland; (V.V.); (S.S.); (L.R.)
| | - Lassi Rieppo
- Research Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, 90570 Oulu, Finland; (V.V.); (S.S.); (L.R.)
| | - Patrick Krebs
- Institute of Analytical and Bioanalytical Chemistry, Ulm University, 89081 Ulm, Germany; (P.K.); (P.F.); (B.M.)
| | - Polina Fomina
- Institute of Analytical and Bioanalytical Chemistry, Ulm University, 89081 Ulm, Germany; (P.K.); (P.F.); (B.M.)
| | - Boris Mizaikoff
- Institute of Analytical and Bioanalytical Chemistry, Ulm University, 89081 Ulm, Germany; (P.K.); (P.F.); (B.M.)
| | - Achim Kohler
- Faculty of Science and Technology, Norwegian University of Life Sciences, 1430 Ås, Norway; (V.T.); (B.Z.); (J.H.S.); (A.K.)
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11
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Torniainen J, Ristaniemi A, Sarin JK, Prakash M, Afara IO, Finnilä MAJ, Stenroth L, Korhonen RK, Töyräs J. Near infrared spectroscopic evaluation of biochemical and crimp properties of knee joint ligaments and patellar tendon. PLoS One 2022; 17:e0263280. [PMID: 35157708 PMCID: PMC8843223 DOI: 10.1371/journal.pone.0263280] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Accepted: 01/16/2022] [Indexed: 11/22/2022] Open
Abstract
Knee ligaments and tendons play an important role in stabilizing and controlling the motions of the knee. Injuries to the ligaments can lead to abnormal mechanical loading of the other supporting tissues (e.g., cartilage and meniscus) and even osteoarthritis. While the condition of knee ligaments can be examined during arthroscopic repair procedures, the arthroscopic evaluation suffers from subjectivity and poor repeatability. Near infrared spectroscopy (NIRS) is capable of non-destructively quantifying the composition and structure of collagen-rich connective tissues, such as articular cartilage and meniscus. Despite the similarities, NIRS-based evaluation of ligament composition has not been previously attempted. In this study, ligaments and patellar tendon of ten bovine stifle joints were measured with NIRS, followed by chemical and histological reference analysis. The relationship between the reference properties of the tissue and NIR spectra was investigated using partial least squares regression. NIRS was found to be sensitive towards the water (R2CV = .65) and collagen (R2CV = .57) contents, while elastin, proteoglycans, and the internal crimp structure remained undetectable. As collagen largely determines the mechanical response of ligaments, we conclude that NIRS demonstrates potential for quantitative evaluation of knee ligaments.
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Affiliation(s)
- Jari Torniainen
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
- Diagnostic Imaging Center, Kuopio University Hospital, Kuopio, Finland
- * E-mail:
| | - Aapo Ristaniemi
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
| | - Jaakko K. Sarin
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
- Diagnostic Imaging Center, Kuopio University Hospital, Kuopio, Finland
- Department of Medical Physics, Medical Imaging Center, Pirkanmaa Hospital District, Tampere, Finland
| | - Mithilesh Prakash
- A. I. Virtanen Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland
| | - Isaac O. Afara
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
- School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, Australia
| | - Mikko A. J. Finnilä
- Research Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Lauri Stenroth
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
| | - Rami K. Korhonen
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
| | - Juha Töyräs
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
- Science Service Center, Kuopio University Hospital, Kuopio, Finland
- School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, Australia
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12
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Khan B, Kafian-Attari I, Nippolainen E, Shaikh R, Semenov D, Hauta-Kasari M, Töyräs J, Afara IO. Articular cartilage optical properties in the near-infrared (NIR) spectral range vary with depth and tissue integrity. BIOMEDICAL OPTICS EXPRESS 2021; 12:6066-6080. [PMID: 34745722 PMCID: PMC8548021 DOI: 10.1364/boe.430053] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Revised: 07/27/2021] [Accepted: 08/09/2021] [Indexed: 05/02/2023]
Abstract
Optical properties of biological tissues in the NIR spectral range have demonstrated significant potential for in vivo diagnostic applications and are critical parameters for modelling light interaction in biological tissues. This study aims to investigate the optical properties of articular cartilage as a function of tissue depth and integrity. The results suggest consistent wavelength-dependent variation in optical properties between cartilage depth-wise zones, as well as between healthy and degenerated tissue. Also, statistically significant differences (p<0.05) in both optical properties were observed between the different cartilage depth-wise zones and as a result of tissue degeneration. When taken into account, the outcome of this study could enable accurate modelling of light interaction in cartilage matrix and could provide useful diagnostic information on cartilage integrity.
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Affiliation(s)
- Bilour Khan
- University of Eastern Finland, Department of Applied Physics, Yliopistonranta 1, Kuopio, Finland, 70120, Finland
| | - Iman Kafian-Attari
- University of Eastern Finland, Department of Applied Physics, Yliopistonranta 1, Kuopio, Finland, 70120, Finland
| | - Ervin Nippolainen
- University of Eastern Finland, Department of Applied Physics, Yliopistonranta 1, Kuopio, Finland, 70120, Finland
| | - Rubina Shaikh
- University of Eastern Finland, Department of Applied Physics, Yliopistonranta 1, Kuopio, Finland, 70120, Finland
| | - Dmitry Semenov
- University of Eastern Finland, School of Computing, Lämsikatu 15, Joensuu, Finland, 80110, Finland
| | - Markku Hauta-Kasari
- University of Eastern Finland, School of Computing, Lämsikatu 15, Joensuu, Finland, 80110, Finland
| | - Juha Töyräs
- University of Eastern Finland, Department of Applied Physics, Yliopistonranta 1, Kuopio, Finland, 70120, Finland
- The University of Queensland, School of Information Technology, and Electrical Engineering, St. Lucia, Australia, QLD 4072, Australia
| | - Isaac O. Afara
- University of Eastern Finland, Department of Applied Physics, Yliopistonranta 1, Kuopio, Finland, 70120, Finland
- The University of Queensland, School of Information Technology, and Electrical Engineering, St. Lucia, Australia, QLD 4072, Australia
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13
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Nissinen MT, Hänninen N, Prakash M, Mäkelä JTA, Nissi MJ, Töyräs J, Nieminen MT, Korhonen RK, Tanska P. Functional and structural properties of human patellar articular cartilage in osteoarthritis. J Biomech 2021; 126:110634. [PMID: 34454206 DOI: 10.1016/j.jbiomech.2021.110634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Revised: 06/18/2021] [Accepted: 07/05/2021] [Indexed: 10/20/2022]
Abstract
Changes in the fibril-reinforced poroelastic (FRPE) mechanical material parameters of human patellar cartilage at different stages of osteoarthritis (OA) are not known. Further, the patellofemoral joint loading is thought to include more sliding and shear compared to other knee joint locations, thus, the relations between structural and functional changes may differ in OA. Thus, our aim was to determine the patellar cartilage FRPE properties followed by associating them with the structure and composition. Osteochondral plugs (n = 14) were harvested from the patellae of six cadavers. Then, the FRPE material properties were determined, and those properties were associated with proteoglycan content, collagen fibril orientation angle, optical retardation (fibril parallelism), and the state of OA of the samples. The initial fibril network modulus and permeability strain-dependency factor were 72% and 63% smaller in advanced OA samples when compared to early OA samples. Further, we observed a negative association between the initial fibril network modulus and optical retardation (r = -0.537, p < 0.05). We also observed positive associations between 1) the initial permeability and optical retardation (r = 0.547, p < 0.05), and 2) the initial fibril network modulus and optical density (r = 0.670, p < 0.01).These results suggest that the reduced pretension of the collagen fibrils, as shown by the reduced initial fibril network modulus, is linked with the loss of proteoglycans and cartilage swelling in human patellofemoral OA. The characterization of these changes is important to improve the representativeness of knee joint models in tissue and cell scale.
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Affiliation(s)
- Mikko T Nissinen
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland; Medical Research Center Oulu, University of Oulu and Oulu University Hospital, Oulu, Finland.
| | - Nina Hänninen
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland; Research Unit of Medical Imaging, Physics, and Technology, University of Oulu, Oulu, Finland
| | - Mithilesh Prakash
- A.I. Virtanen Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland
| | - Janne T A Mäkelä
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
| | - Mikko J Nissi
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland; Research Unit of Medical Imaging, Physics, and Technology, University of Oulu, Oulu, Finland
| | - Juha Töyräs
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland; Science Service Center, Kuopio University Hospital, Kuopio, Finland; School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, Australia
| | - Miika T Nieminen
- Medical Research Center Oulu, University of Oulu and Oulu University Hospital, Oulu, Finland; Research Unit of Medical Imaging, Physics, and Technology, University of Oulu, Oulu, Finland; Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
| | - Rami K Korhonen
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
| | - Petri Tanska
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
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14
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Hänninen NE, Nykänen O, Prakash M, Hanni M, Nieminen MT, Nissi MJ. Orientation anisotropy of quantitative MRI parameters in degenerated human articular cartilage. J Orthop Res 2021; 39:861-870. [PMID: 32543737 DOI: 10.1002/jor.24778] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/30/2019] [Revised: 05/08/2020] [Accepted: 06/12/2020] [Indexed: 02/04/2023]
Abstract
Quantitative magnetic resonance (MR) relaxation parameters demonstrate varying sensitivity to the orientation of the ordered tissues in the magnetic field. In this study, the orientation dependence of multiple relaxation parameters was assessed in cadaveric human cartilage with varying degree of natural degeneration, and compared with biomechanical testing, histological scoring, and quantitative histology. Twelve patellar cartilage samples were imaged at 9.4 T MRI with multiple relaxation parameters, including T1 , T2 , CW - T1ρ , and adiabatic T1ρ , at three different orientations with respect to the main magnetic field. Anisotropy of the relaxation parameters was quantified, and the results were compared with the reference measurements and between samples of different histological Osteoarthritis Research Society International (OARSI) grades. T2 and CW - T1ρ at 400 Hz spin-lock demonstrated the clearest anisotropy patterns. Radial zone anisotropy for T2 was significantly higher for samples with OARSI grade 2 than for grade 4. The proteoglycan content (measured as optical density) correlated with the radial zone MRI orientation anisotropy for T2 (r = 0.818) and CW - T1ρ with 400 Hz spin-lock (r = 0.650). Orientation anisotropy of MRI parameters altered with progressing cartilage degeneration. This is associated with differences in the integrity of the collagen fiber network, but it also seems to be related to the proteoglycan content of the cartilage. Samples with advanced OA had great variation in all biomechanical and histological properties and exhibited more variation in MRI orientation anisotropy than the less degenerated samples. Understanding the background of relaxation anisotropy on a molecular level would help to develop new MRI contrasts and improve the application of previously established quantitative relaxation contrasts.
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Affiliation(s)
- Nina Elina Hänninen
- Research Unit of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland.,Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
| | - Olli Nykänen
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
| | - Mithilesh Prakash
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland.,A.I. Virtanen Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland
| | - Matti Hanni
- Research Unit of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland.,Medical Research Center Oulu, Oulu University Hospital, University of Oulu, Oulu, Finland.,Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
| | - Miika Tapio Nieminen
- Research Unit of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland.,Medical Research Center Oulu, Oulu University Hospital, University of Oulu, Oulu, Finland.,Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
| | - Mikko Johannes Nissi
- Research Unit of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland.,Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
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15
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Quantitative dual contrast photon-counting computed tomography for assessment of articular cartilage health. Sci Rep 2021; 11:5556. [PMID: 33692379 PMCID: PMC7946949 DOI: 10.1038/s41598-021-84800-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2020] [Accepted: 02/09/2021] [Indexed: 01/31/2023] Open
Abstract
Photon-counting detector computed tomography (PCD-CT) is a modern spectral imaging technique utilizing photon-counting detectors (PCDs). PCDs detect individual photons and classify them into fixed energy bins, thus enabling energy selective imaging, contrary to energy integrating detectors that detects and sums the total energy from all photons during acquisition. The structure and composition of the articular cartilage cannot be detected with native CT imaging but can be assessed using contrast-enhancement. Spectral imaging allows simultaneous decomposition of multiple contrast agents, which can be used to target and highlight discrete cartilage properties. Here we report, for the first time, the use of PCD-CT to quantify a cationic iodinated CA4+ (targeting proteoglycans) and a non-ionic gadolinium-based gadoteridol (reflecting water content) contrast agents inside human osteochondral tissue (n = 53). We performed PCD-CT scanning at diffusion equilibrium and compared the results against reference data of biomechanical and optical density measurements, and Mankin scoring. PCD-CT enables simultaneous quantification of the two contrast agent concentrations inside cartilage and the results correlate with the structural and functional reference parameters. With improved soft tissue contrast and assessment of proteoglycan and water contents, PCD-CT with the dual contrast agent method is of potential use for the detection and monitoring of osteoarthritis.
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16
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Sarin JK, Te Moller NCR, Mohammadi A, Prakash M, Torniainen J, Brommer H, Nippolainen E, Shaikh R, Mäkelä JTA, Korhonen RK, van Weeren PR, Afara IO, Töyräs J. Machine learning augmented near-infrared spectroscopy: In vivo follow-up of cartilage defects. Osteoarthritis Cartilage 2021; 29:423-432. [PMID: 33359249 DOI: 10.1016/j.joca.2020.12.007] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Revised: 11/06/2020] [Accepted: 12/11/2020] [Indexed: 02/02/2023]
Abstract
OBJECTIVE To assess the potential of near-infrared spectroscopy (NIRS) for in vivo arthroscopic monitoring of cartilage defects. METHOD Sharp and blunt cartilage grooves were induced in the radiocarpal and intercarpal joints of Shetland ponies and monitored at baseline (0 weeks) and at three follow-up timepoints (11, 23, and 39 weeks) by measuring near-infrared spectra in vivo at and around the grooves. The animals were sacrificed after 39 weeks and the joints were harvested. Spectra were reacquired ex vivo to ensure reliability of in vivo measurements and for reference analyses. Additionally, cartilage thickness and instantaneous modulus were determined via computed tomography and mechanical testing, respectively. The relationship between the ex vivo spectra and cartilage reference properties was determined using convolutional neural network. RESULTS In an independent test set, the trained networks yielded significant correlations for cartilage thickness (ρ = 0.473) and instantaneous modulus (ρ = 0.498). These networks were used to predict the reference properties at baseline and at follow-up time points. In the radiocarpal joint, cartilage thickness increased significantly with both groove types after baseline and remained swollen. Additionally, at 39 weeks, a significant difference was observed in cartilage thickness between controls and sharp grooves. For the instantaneous modulus, a significant decrease was observed with both groove types in the radiocarpal joint from baseline to 23 and 39 weeks. CONCLUSION NIRS combined with machine learning enabled determination of cartilage properties in vivo, thereby providing longitudinal evaluation of post-intervention injury development. Additionally, radiocarpal joints were found more vulnerable to cartilage degeneration after damage than intercarpal joints.
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Affiliation(s)
- J K Sarin
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland; Diagnostic Imaging Center, Kuopio University Hospital, Kuopio, Finland.
| | - N C R Te Moller
- Department of Clinical Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, the Netherlands.
| | - A Mohammadi
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland.
| | - M Prakash
- A.I. Virtanen Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland.
| | - J Torniainen
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland; Diagnostic Imaging Center, Kuopio University Hospital, Kuopio, Finland.
| | - H Brommer
- Department of Clinical Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, the Netherlands.
| | - E Nippolainen
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland.
| | - R Shaikh
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland.
| | - J T A Mäkelä
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland.
| | - R K Korhonen
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland.
| | - P R van Weeren
- Department of Clinical Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, the Netherlands; Regenerative Medicine Utrecht, Utrecht, the Netherlands.
| | - I O Afara
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland.
| | - J Töyräs
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland; Diagnostic Imaging Center, Kuopio University Hospital, Kuopio, Finland; School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, Australia.
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17
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Querido W, Kandel S, Pleshko N. Applications of Vibrational Spectroscopy for Analysis of Connective Tissues. Molecules 2021; 26:922. [PMID: 33572384 PMCID: PMC7916244 DOI: 10.3390/molecules26040922] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 01/30/2021] [Accepted: 02/04/2021] [Indexed: 02/07/2023] Open
Abstract
Advances in vibrational spectroscopy have propelled new insights into the molecular composition and structure of biological tissues. In this review, we discuss common modalities and techniques of vibrational spectroscopy, and present key examples to illustrate how they have been applied to enrich the assessment of connective tissues. In particular, we focus on applications of Fourier transform infrared (FTIR), near infrared (NIR) and Raman spectroscopy to assess cartilage and bone properties. We present strengths and limitations of each approach and discuss how the combination of spectrometers with microscopes (hyperspectral imaging) and fiber optic probes have greatly advanced their biomedical applications. We show how these modalities may be used to evaluate virtually any type of sample (ex vivo, in situ or in vivo) and how "spectral fingerprints" can be interpreted to quantify outcomes related to tissue composition and quality. We highlight the unparalleled advantage of vibrational spectroscopy as a label-free and often nondestructive approach to assess properties of the extracellular matrix (ECM) associated with normal, developing, aging, pathological and treated tissues. We believe this review will assist readers not only in better understanding applications of FTIR, NIR and Raman spectroscopy, but also in implementing these approaches for their own research projects.
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Affiliation(s)
| | | | - Nancy Pleshko
- Department of Bioengineering, Temple University, Philadelphia, PA 19122, USA; (W.Q.); (S.K.)
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18
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Afara IO, Shaikh R, Nippolainen E, Querido W, Torniainen J, Sarin JK, Kandel S, Pleshko N, Töyräs J. Characterization of connective tissues using near-infrared spectroscopy and imaging. Nat Protoc 2021; 16:1297-1329. [PMID: 33462441 DOI: 10.1038/s41596-020-00468-z] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Accepted: 11/20/2020] [Indexed: 02/06/2023]
Abstract
Near-infrared (NIR) spectroscopy is a powerful analytical method for rapid, non-destructive and label-free assessment of biological materials. Compared to mid-infrared spectroscopy, NIR spectroscopy excels in penetration depth, allowing intact biological tissue assessment, albeit at the cost of reduced molecular specificity. Furthermore, it is relatively safe compared to Raman spectroscopy, with no risk of laser-induced photothermal damage. A typical NIR spectroscopy workflow for biological tissue characterization involves sample preparation, spectral acquisition, pre-processing and analysis. The resulting spectrum embeds intrinsic information on the tissue's biomolecular, structural and functional properties. Here we demonstrate the analytical power of NIR spectroscopy for exploratory and diagnostic applications by providing instructions for acquiring NIR spectra, maps and images in biological tissues. By adapting and extending this protocol from the demonstrated application in connective tissues to other biological tissues, we expect that a typical NIR spectroscopic study can be performed by a non-specialist user to characterize biological tissues in basic research or clinical settings. We also describe how to use this protocol for exploratory study on connective tissues, including differentiating among ligament types, non-destructively monitoring changes in matrix formation during engineered cartilage development, mapping articular cartilage proteoglycan content across bovine patella and spectral imaging across the depth-wise zones of articular cartilage and subchondral bone. Depending on acquisition mode and experiment objectives, a typical exploratory study can be completed within 6 h, including sample preparation and data analysis.
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Affiliation(s)
- Isaac O Afara
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland.
- School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, Queensland, Australia.
| | - Rubina Shaikh
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
- Diagnostic Imaging Centre, Kuopio University Hospital, Kuopio, Finland
| | - Ervin Nippolainen
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
| | - William Querido
- Department of Bioengineering, Temple University, Philadelphia, PA, USA
| | - Jari Torniainen
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
| | - Jaakko K Sarin
- Diagnostic Imaging Centre, Kuopio University Hospital, Kuopio, Finland
| | - Shital Kandel
- Department of Bioengineering, Temple University, Philadelphia, PA, USA
| | - Nancy Pleshko
- Department of Bioengineering, Temple University, Philadelphia, PA, USA
| | - Juha Töyräs
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
- School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, Queensland, Australia
- Diagnostic Imaging Centre, Kuopio University Hospital, Kuopio, Finland
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19
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Kafian-Attari I, Nippolainen E, Semenov D, Hauta-Kasari M, Töyräs J, Afara IO. Tissue optical properties combined with machine learning enables estimation of articular cartilage composition and functional integrity. BIOMEDICAL OPTICS EXPRESS 2020; 11:6480-6494. [PMID: 33282503 PMCID: PMC7687936 DOI: 10.1364/boe.402929] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Revised: 09/21/2020] [Accepted: 09/25/2020] [Indexed: 05/06/2023]
Abstract
Absorption and reduced scattering coefficients ( μ a , μ s ' ) of biological tissues have shown significant potential in biomedical applications. Thus, they are effective parameters for the characterization of tissue integrity and provide vital information on the health of biological tissues. This study investigates the potential of optical properties ( μ a , μ s ' ) for estimating articular cartilage composition and biomechanical properties using multivariate and machine learning techniques. The results suggest that μa could optimally estimate cartilage proteoglycan content in the superficial zone, in addition to its equilibrium modulus. While μ s ' could effectively estimate the proteoglycan content of the middle and deep zones in addition to the instantaneous and dynamic moduli of articular cartilage.
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Affiliation(s)
- Iman Kafian-Attari
- University of Eastern Finland, Department of Applied Physics, Yliopistonranta 1, Kuopio 70120, Finland
| | - Ervin Nippolainen
- University of Eastern Finland, Department of Applied Physics, Yliopistonranta 1, Kuopio 70120, Finland
| | - Dmitry Semenov
- University of Eastern Finland, School of Computing, Lämsikatu 15, Joensuu 80110, Finland
| | - Markku Hauta-Kasari
- University of Eastern Finland, School of Computing, Lämsikatu 15, Joensuu 80110, Finland
| | - Juha Töyräs
- University of Eastern Finland, Department of Applied Physics, Yliopistonranta 1, Kuopio 70120, Finland
- The University of Queensland, School of Information Technology, and Electrical Engineering, Brisbane, QLD 4067, Australia
| | - Isaac O. Afara
- University of Eastern Finland, Department of Applied Physics, Yliopistonranta 1, Kuopio 70120, Finland
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Near Infrared Spectroscopy Enables Differentiation of Mechanically and Enzymatically Induced Cartilage Injuries. Ann Biomed Eng 2020; 48:2343-2353. [PMID: 32300956 PMCID: PMC7452885 DOI: 10.1007/s10439-020-02506-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Accepted: 04/02/2020] [Indexed: 01/29/2023]
Abstract
This study evaluates the feasibility of near infrared (NIR) spectroscopy to distinguish between different cartilage injury types associated with post-traumatic osteoarthritis and idiopathic osteoarthritis (OA) induced by mechanical and enzymatic damages. Bovine osteochondral samples (n = 72) were subjected to mechanical (n = 24) and enzymatic (n = 36) damage; NIR spectral measurements were acquired from each sample before and after damage, and from a separate control group (n = 12). Biomechanical measurements were then conducted to determine the functional integrity of the samples. NIR spectral variations resulting from different damage types were investigated and the samples classified using partial least squares discriminant analysis (PLS-DA). Partial least squares regression (PLSR) was then employed to investigate the relationship between the NIR spectra and biomechanical properties of the samples. Results of the study demonstrate that substantial spectral changes occur in the region of 1700–2200 nm due to tissue damages, while differences between enzymatically and mechanically induced damages can be observed mainly in the region of 1780–1810 nm. We conclude that NIR spectroscopy, combined with multivariate analysis, is capable of discriminating between cartilage injuries that mimic idiopathic OA and traumatic injuries based on specific spectral features. This information could be useful in determining the optimal treatment strategy during cartilage repair in arthroscopy.
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Machine Learning Classification of Articular Cartilage Integrity Using Near Infrared Spectroscopy. Cell Mol Bioeng 2020; 13:219-228. [PMID: 32426059 PMCID: PMC7225230 DOI: 10.1007/s12195-020-00612-5] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2019] [Accepted: 02/18/2020] [Indexed: 12/15/2022] Open
Abstract
Introduction Assessment of cartilage integrity during arthroscopy is limited by the subjective visual nature of the technique. To address this shortcoming in diagnostic evaluation of articular cartilage, near infrared spectroscopy (NIRS) has been proposed. In this study, we evaluated the capacity of NIRS, combined with machine learning techniques, to classify cartilage integrity. Methods Rabbit (n = 14) knee joints with artificial injury, induced via unilateral anterior cruciate ligament transection (ACLT), and the corresponding contra-lateral (CL) joints, including joints from separate non-operated control (CNTRL) animals (n = 8), were used. After sacrifice, NIR spectra (1000–2500 nm) were acquired from different anatomical locations of the joints (nTOTAL = 313: nCNTRL = 111, nCL = 97, nACLT = 105). Machine and deep learning methods (support vector machines–SVM, logistic regression–LR, and deep neural networks–DNN) were then used to develop models for classifying the samples based solely on their NIR spectra. Results The results show that the model based on SVM is optimal of distinguishing between ACLT and CNTRL samples (ROC_AUC = 0.93, kappa = 0.86), LR is capable of distinguishing between CL and CNTRL samples (ROC_AUC = 0.91, kappa = 0.81), while DNN is optimal for discriminating between the different classes (multi-class classification, kappa = 0.48). Conclusion We show that NIR spectroscopy, when combined with machine learning techniques, is capable of holistic assessment of cartilage integrity, with potential for accurately distinguishing between healthy and diseased cartilage. Electronic supplementary material The online version of this article (10.1007/s12195-020-00612-5) contains supplementary material, which is available to authorized users.
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