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Rahman S, Iram S, Rehman MT, Hussain A, Jan AT, Kim J. Study of Amiloride Binding to Human Serum Albumin: Insights from Thermodynamic, Spectroscopic, and Molecular Docking Investigations. Molecules 2023; 28:7688. [PMID: 38067419 PMCID: PMC10707572 DOI: 10.3390/molecules28237688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 11/10/2023] [Accepted: 11/16/2023] [Indexed: 12/18/2023] Open
Abstract
This study was undertaken to investigate the interaction between the sodium channel blocker amiloride (AML) and human serum albumin (HSA). A combination of multi-spectroscopic techniques and computational methods were employed to identify the AML binding site on HSA and the forces responsible for the formation of the HSA-AML complex. Our findings revealed that AML specifically binds to Sudlow's site II, located in subdomain IIIA of HSA, and that the complex formed is stabilized using van der Waals hydrogen-bonding and hydrophobic interactions. FRET analysis showed that the distance between AML and Trp214 was optimal for efficient quenching. UV-Vis spectroscopy and circular dichroism indicated minor changes in the structure of HSA after AML binding, and molecular dynamics simulations (MDS) conducted over 100 ns provided additional evidence of stable HSA-AML-complex formation. This study enhances understanding of the interaction between AML and HSA and the mechanism responsible.
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Affiliation(s)
- Safikur Rahman
- Munshi Singh College, BR Ambedkar Bihar University, Muzaffarpur 845401, India;
| | - Sana Iram
- Department of Medical Biotechnology, Yeungnam University, Gyeongsan 712-749, Republic of Korea;
| | - Md Tabish Rehman
- Department of Pharmacognosy, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia; (M.T.R.); (A.H.)
| | - Afzal Hussain
- Department of Pharmacognosy, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia; (M.T.R.); (A.H.)
| | - Arif Tasleem Jan
- School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri 185234, India;
| | - Jihoe Kim
- Department of Medical Biotechnology, Yeungnam University, Gyeongsan 712-749, Republic of Korea;
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Wang Y, Aoki S, Nara K, Kikuchi Y, Jiao Z, Hasebe Y. Shield, Anchor, and Adhesive Roles of Methylene Blue in Tyrosinase Adsorbed on Carbon Felt for a Flow Injection Amperometric Enzyme Biosensor for Phenolic Substrates and Inhibitors. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:4676-4691. [PMID: 36961887 DOI: 10.1021/acs.langmuir.2c03483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Methylene blue (MB) acted as a stabilizer for preventing surface-induced denaturation of tyrosinase (TYR) adsorbed on a carbon felt (CF) surface, which is based on shield and anchor roles preventing the unfavorable conformational change of TYR on the hydrophobic CF surface. Furthermore, MB acted as an effective adhesive for TYR immobilization on CF. The resulting TYR and MB coadsorbed CF (TYR/MB-CF) worked as an excellent working electrode unit in an electrochemical detector in a flow injection amperometric biosensor, which allowed highly sensitive consecutive determination of not only TYR substrates but also competitive inhibitors. Simultaneous adsorption of TYR and MB from their mixed solution was much useful as compared with step-wise separated adsorption of TYR on the MB-adsorbed CF, which suggests that the binding interaction of MB with TYR in the solution phase is important for this phenomenon. Fluorescence and UV-vis spectroscopy revealed that not only electrostatic forces between the cationic MB and anionic amino acid residues of TYR but also hydrophobic interactions via the phenothiazine ring of MB play a principal binding driving force of MB with TYR at the surface of the TYR molecules. Synchronous fluorescence, three-dimensional fluorescence, and circular dichroism (CD) spectroscopy clarified that the conformation and the secondary structure of TYR slightly changed upon the MB binding, implying that MB binding leads to the modification of the original intramolecular bonding in part.
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Affiliation(s)
- Yue Wang
- School of Chemical Engineering, University of Science and Technology LiaoNing, Anshan, LiaoNing 114501, China
| | - Shiori Aoki
- Department of Life Science and Green Chemistry, Graduate School of Engineering, Saitama Institute of Technology, 1690, Fusaiji, Fukaya, Saitama 369-0293, Japan
| | - Kazuyuki Nara
- Department of Life Science and Green Chemistry, Faculty of Engineering, Saitama Institute of Technology, 1690, Fusaiji, Fukaya, Saitama 369-0293, Japan
| | - Yugo Kikuchi
- Department of Life Science and Green Chemistry, Faculty of Engineering, Saitama Institute of Technology, 1690, Fusaiji, Fukaya, Saitama 369-0293, Japan
| | - Zeting Jiao
- Department of Life Science and Green Chemistry, Graduate School of Engineering, Saitama Institute of Technology, 1690, Fusaiji, Fukaya, Saitama 369-0293, Japan
| | - Yasushi Hasebe
- Department of Life Science and Green Chemistry, Graduate School of Engineering, Saitama Institute of Technology, 1690, Fusaiji, Fukaya, Saitama 369-0293, Japan
- Department of Life Science and Green Chemistry, Faculty of Engineering, Saitama Institute of Technology, 1690, Fusaiji, Fukaya, Saitama 369-0293, Japan
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Antioxidant and Antivenom Potential of an Essential Oil, 4-(2-Oxo-propyl)-cyclopentane-1,3-dione, and Allantoin Derived from the Polyherbal Combination of Aristolochia indica L. and Piper nigrum L. EVIDENCE-BASED COMPLEMENTARY AND ALTERNATIVE MEDICINE 2022; 2022:4797884. [PMID: 35295928 PMCID: PMC8920640 DOI: 10.1155/2022/4797884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Accepted: 02/16/2022] [Indexed: 11/18/2022]
Abstract
The goal of this study was to identify new compounds from a methanol extract of a polyherbal combination of Aristolochia indica L. and Piper nigrum L. (MECAIPN), two traditional medicinal plants used to cure envenomation, as well as to assess their antioxidant and antivenom properties. MECAIPN yielded EA1 (an essential oil), AA2 (4-(2-oxo-propyl)-cyclopentane-1,3-dione), and W3 ((2,5-dioxo-imidazolidin-4-yl)-urea) (Allantoin). Although EA1 had stronger radical scavenging activity, AA2 had higher DPPH and ferric ion radical scavenging activity, and W3 had higher molybdenum ion radical scavenging activity due to being a single molecule, the binding investigation revealed that EA1 has a greater Stern–Volmer quenching constant (Ksv) than AA2 and W3. Synchronous measurements indicated that EA1, AA2, and W3 bind to tryptophan and tyrosine residues in venom, causing denaturation of the secondary structure of the residue. Finally, the current study concludes that EA1 has more therapeutic antivenom potential, which could be related to the synergism of chemicals found in it. When it came to single compounds, AA2 had stronger antioxidant and antivenom capabilities than W3. To understand the mechanism of action and manufacture the green antivenom medication, more testing of the EA1 and compounds remains required.
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Eslami-Farsani R, Farhadian S, Shareghi B, Momeni L. Structural insights into the binding behavior of NiO with myoglobin. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.117999] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Vardevanyan PO, Antonyan AP, Parsadanyan MA, Shahinyan MA, Petrosyan NH. Study of interaction of methylene blue with DNA and albumin. J Biomol Struct Dyn 2021; 40:7779-7785. [PMID: 33729082 DOI: 10.1080/07391102.2021.1902397] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
The interaction of thiazine dye methylene blue (MB) with Calf thymus DNA and human blood serum albumin (HSA) has been studied. MB was revealed to stabilize the native structure of DNA and HSA, since the melting temperature of the complexes is shifted to higher values in relation to that of both macromolecules in pure state. It was also revealed that the absorption and fluorescence spectra of the MB-DNA complexes change significantly, while those of MB-albumin complexes do not change noticeably. Analysis of the obtained data allows to conclude that MB binds to DNA by two modes, including intercalation and electrostatic mechanisms. In the case of HSA, the main binding mode of MB, conditioning the stabilization of the protein native structure, is the electrostatic mechanism.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Poghos O Vardevanyan
- Faculty of Biology, Department of Biophysics, Yerevan State University, Yerevan, Armenia
| | - Ara P Antonyan
- Faculty of Biology, Department of Biophysics, Yerevan State University, Yerevan, Armenia
| | - Marine A Parsadanyan
- Faculty of Biology, Department of Biophysics, Yerevan State University, Yerevan, Armenia
| | - Mariam A Shahinyan
- Faculty of Biology, Department of Biophysics, Yerevan State University, Yerevan, Armenia
| | - Nara H Petrosyan
- Faculty of Biology, Department of Biophysics, Yerevan State University, Yerevan, Armenia
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Fernandes E, Benfeito S, Cagide F, Gonçalves H, Bernstorff S, Nieder JB, Cd Real Oliveira ME, Borges F, Lúcio M. Lipid Nanosystems and Serum Protein as Biomimetic Interfaces: Predicting the Biodistribution of a Caffeic Acid-Based Antioxidant. Nanotechnol Sci Appl 2021; 14:7-27. [PMID: 33603350 PMCID: PMC7882595 DOI: 10.2147/nsa.s289355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Accepted: 01/16/2021] [Indexed: 11/30/2022] Open
Abstract
Purpose AntiOxCIN3 is a novel mitochondriotropic antioxidant developed to minimize the effects of oxidative stress on neurodegenerative diseases. Prior to an investment in pre-clinical in vivo studies, it is important to apply in silico and biophysical cell-free in vitro studies to predict AntiOxCIN3 biodistribution profile, respecting the need to preserve animal health in accordance with the EU principles (Directive 2010/63/EU). Accordingly, we propose an innovative toolbox of biophysical studies and mimetic models of biological interfaces, such as nanosystems with different compositions mimicking distinct membrane barriers and human serum albumin (HSA). Methods Intestinal and cell membrane permeation of AntiOxCIN3 was predicted using derivative spectrophotometry. AntiOxCIN3 –HSA binding was evaluated by intrinsic fluorescence quenching, synchronous fluorescence, and dynamic/electrophoretic light scattering. Steady-state and time-resolved fluorescence quenching was used to predict AntiOxCIN3-membrane orientation. Fluorescence anisotropy, synchrotron small- and wide-angle X-ray scattering were used to predict lipid membrane biophysical impairment caused by AntiOxCIN3 distribution. Results and Discussion We found that AntiOxCIN3 has the potential to permeate the gastrointestinal tract. However, its biodistribution and elimination from the body might be affected by its affinity to HSA (>90%) and by its steady-state volume of distribution (VDSS=1.89± 0.48 L∙Kg−1). AntiOxCIN3 is expected to locate parallel to the membrane phospholipids, causing a bilayer stiffness effect. AntiOxCIN3 is also predicted to permeate through blood-brain barrier and reach its therapeutic target – the brain. Conclusion Drug interactions with biological interfaces may be evaluated using membrane model systems and serum proteins. This knowledge is important for the characterization of drug partitioning, positioning and orientation of drugs in membranes, their effect on membrane biophysical properties and the study of serum protein binding. The analysis of these interactions makes it possible to collect valuable knowledge on the transport, distribution, accumulation and, eventually, therapeutic impact of drugs which may aid the drug development process.
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Affiliation(s)
- Eduarda Fernandes
- Departamento de Física da Universidade do Minho, CF-UM-UP, Centro de Física das Universidades do Minho e Porto, Campus de Gualtar, Braga, 4710-057, Portugal.,Ultrafast Bio- and Nanophotonics Group, INL - International Iberian Nanotechnology Laboratory, Braga, Portugal
| | - Sofia Benfeito
- CIQUP/Department of Chemistry and Biochemistry, Faculty of Sciences, University of Porto, Porto, Portugal
| | - Fernando Cagide
- CIQUP/Department of Chemistry and Biochemistry, Faculty of Sciences, University of Porto, Porto, Portugal
| | | | - Sigrid Bernstorff
- Elettra-Sincrotrone Trieste S. C.p.A.,, Basovizza, Trieste, I-34149, Italy
| | - Jana B Nieder
- Ultrafast Bio- and Nanophotonics Group, INL - International Iberian Nanotechnology Laboratory, Braga, Portugal
| | - M Elisabete Cd Real Oliveira
- Departamento de Física da Universidade do Minho, CF-UM-UP, Centro de Física das Universidades do Minho e Porto, Campus de Gualtar, Braga, 4710-057, Portugal
| | - Fernanda Borges
- CIQUP/Department of Chemistry and Biochemistry, Faculty of Sciences, University of Porto, Porto, Portugal
| | - Marlene Lúcio
- Departamento de Física da Universidade do Minho, CF-UM-UP, Centro de Física das Universidades do Minho e Porto, Campus de Gualtar, Braga, 4710-057, Portugal.,CBMA, Centro de Biologia Molecular e Ambiental, Departamento de Biologia, Universidade do Minho, Campus de Gualtar, Braga 4710-057, Portugal
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Kontarov NA, Dolgova EI, Pogarskaja IV, Kontarova EO, Grishunina JB, Yuminova NV. [Determination of thermodynamic binding parameters and type of interaction between the А/Bangkok/1/1979 (Н3N2) influenza virus hemagglutinin and phosphatidylcholine liposome]. BIOMEDIT︠S︡INSKAI︠A︡ KHIMII︠A︡ 2021; 66:401-405. [PMID: 33140734 DOI: 10.18097/pbmc20206605401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The study of interaction between surface viral proteins and model phospholipids is important for learning more details about the mechanisms of viral penetration into cells during infection. In this context, liposomes represent suitable systems for modeling a cell membrane. The binding of hemagglutinin (HA) of influenza virus with phosphatidylcholine liposomes was studied by equilibrium adsorption. It was interesting elucidate changes occurring in the structure of a protein during its translocation from the surface into the interior part of the membrane. In this work, we have studied characteristics of the protein-lipid interaction during HA complex formation with phospholipids including adsorption of HA on a phospholipid bilayer. Using the Scatchard equation and the Gibbs-Helmholtz equation at pH 4.0 and pH 6.0 thermodynamic parameters were determined. The results concluded the hydrophobic type of interaction between viral protein and liposomes. The additional confirmation of hydrophobic protein-lipid interaction presence was determination of HA distribution constants in two-phase systems: dextran-polyethylene glycol (K1) and dextran-polyethylene glycol esterified with palmitic acid (K2). The presence of hydrophobic interaction between HA and the liposome membrane was also confirmed using the quenching method of intrinsic protein fluorescence by a neutral quencher with acrylamide. At pH 4.0, an increase in the Stern-Volmer quenching constant was observed for the HA+liposome from phosphatidylcholine system, which is caused by structural changes in HA upon incorporation into the liposome bilayer. The fluorescence quenching rate constants calculated using the Stern-Volmer equation indicate a static quenching mechanism in which the quencher interacts with fluophors of a stationary protein molecule. The obtained results are interesting for not only studying virus and cell fusion theoretically, but also have practical applications. Using values of the protein-bilayer binding constant and free energy constant, it is possible to select the optimal phospholipid composition of liposomes or virosomes to obtain a stronger complex with various viral proteins. With two-phase systems, it is possible to determine the presence of hydrophobic sites on the viral protein surface, which can be used for evaluation both protein-lipid and protein-protein interaction.
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Affiliation(s)
- N A Kontarov
- Sechenov First Moscow State Medical University (Sechenov University), Moscow, Russia; Mechnikov Research Institute of Vaccines and Sera, Moscow, Russia
| | - E I Dolgova
- Mechnikov Research Institute of Vaccines and Sera, Moscow, Russia
| | - I V Pogarskaja
- Mechnikov Research Institute of Vaccines and Sera, Moscow, Russia
| | - E O Kontarova
- Federal Scientific and Clinical Center, Clinical Hospital no. 83, Moscow, Russia
| | - Ju B Grishunina
- HSE Tikhonov Moscow Institute of Electronics and Mathematics (MIEM HSE), Moscow, Russia
| | - N V Yuminova
- Mechnikov Research Institute of Vaccines and Sera, Moscow, Russia
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Li S, Yin L, Yi J, Zhang LM, Yang L. Insight into interaction mechanism between theaflavin-3-gallate and α-glucosidase using spectroscopy and molecular docking analysis. J Food Biochem 2020; 45:e13550. [PMID: 33150631 DOI: 10.1111/jfbc.13550] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Revised: 10/03/2020] [Accepted: 10/12/2020] [Indexed: 11/29/2022]
Abstract
To elucidate the α-glucosidase (α-GC) inhibitory mechanism of theaflavin-3-gallate (TF-3-G), their interaction mechanism was investigated using spectroscopy and molecular docking analysis. The inhibition ratio of TF-3-G against α-GC was determined to be 92.3%. Steady fluorescence spectroscopy showed that TF-3-G effectively quenched the intrinsic fluorescence of α-GC through static quenching, forming a stable complex through hydrophobic interactions. Formation of the TF-3-G/α-GC complex was also confirmed by resonance light scattering spectroscopy. Synchronous fluorescence spectroscopy and circular dichroism spectroscopy indicated that the secondary structure of α-GC was changed by TF-3-G. Molecular docking was used to simulate TF-3-G/α-GC complex formation, showing that TF-3-G might be inserted into the hydrophobic region around the active site of ɑ-GC, and bind with the catalytic Asp215 and Asp352 residues. The ɑ-GC inhibitory mechanism of TF-3-G was mainly attributed to the change in ɑ-GC secondary structure caused by the complex formation. PRACTICAL APPLICATIONS: α-Glucosidase (α-GC) can hydrolyze the glycosidic bonds of starch and oligosaccharides in food and release glucose. Therefore, the inhibition of α-GC activity has been used to treat postprandial hyperglycemia and type 2 diabetes mellitus. Theaflavin-3-gallate (TF-3-G), a flavonoid found in the fermentation products of black tea, exhibits strong inhibition of α-GC activity. However, the α-GC inhibitory mechanism of TF-3-G is unclear. This study aids understanding of this mechanism, and proposed a possibly basic theory for improving the medicinal value of TF-3-G in diabetes therapy.
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Affiliation(s)
- Siyuan Li
- School of Materials Science and Engineering, Sun Yat-sen University, Guangzhou, China
| | - Lin Yin
- Department of Polymer and Material Science, School of Chemistry, Sun Yat-sen University, Guangzhou, China
| | - Juzhen Yi
- Department of Polymer and Material Science, School of Chemistry, Sun Yat-sen University, Guangzhou, China.,Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education, Guangdong Provincial Key Laboratory for High Performance Polymer-based Composites, Sun Yat-sen University, Guangzhou, China
| | - Li-Ming Zhang
- School of Materials Science and Engineering, Sun Yat-sen University, Guangzhou, China.,Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education, Guangdong Provincial Key Laboratory for High Performance Polymer-based Composites, Sun Yat-sen University, Guangzhou, China
| | - Liqun Yang
- Department of Polymer and Material Science, School of Chemistry, Sun Yat-sen University, Guangzhou, China.,Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education, Guangdong Provincial Key Laboratory for High Performance Polymer-based Composites, Sun Yat-sen University, Guangzhou, China
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Study on the antibacterial activity and interaction with human serum albumin of Tagetes erecta inspired biogenic silver nanoparticles. Process Biochem 2020. [DOI: 10.1016/j.procbio.2020.07.017] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Study of alkaline phosphatase interaction with putrescine using multi-spectroscopic and docking methods. Colloids Surf B Biointerfaces 2020; 185:110509. [DOI: 10.1016/j.colsurfb.2019.110509] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2019] [Revised: 09/13/2019] [Accepted: 09/14/2019] [Indexed: 12/19/2022]
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Guo Q, Liu M, Zhao Y, Wu Y, Liu J, Cai C, Shi Y, Han J. Spectroscopic and cytotoxicity studies on the combined interaction of (-)-epigallocatechin-3-gallate and anthracycline drugs with human serum albumin. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 222:117213. [PMID: 31177010 DOI: 10.1016/j.saa.2019.117213] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Revised: 04/26/2019] [Accepted: 05/26/2019] [Indexed: 06/09/2023]
Abstract
The interactions of (-)-epigallocatechin-3-Gallate (EGCG) and anthracycline drugs (doxorubicin, DOX and epirubicin, EPI) alone or in combination with human serum albumin (HSA) under physiological condition were studied by fluorescence spectroscopy, UV-vis absorption spectroscopy, circular dichroism (CD) spectroscopy, and dynamic light scattering (DLS). The cytotoxic activity of the single drug, combined drugs, and their complexes with HSA against human cervical cancer HeLa cell line was determined by MTT assay. Fluorescence quenching result and difference spectra of UV absorption revealed the formation of static complex between EGCG, DOX, or EPI and HSA. The binding of EGCG with HSA was driven by both enthalpy and entropy while the binding of DOX or EPI was mainly entropy driven. The nature of binding was expounded based on the effect of sodium chloride, tetrabutylammonium bromide, and sucrose which interfere in electrostatic, hydrophobic, and hydrogen bonding interactions, respectively. Site marker competitive experiments combined with synchronous fluorescence spectra showed that these three ligands mainly bound to subdomain IIA of HSA and were closer to tryptophan residues. In EGCG + DOX/EPI + HSA ternary system, the effect of one drug on the binding ability of another drug was discussed. The influences of the individual and combined binding of EGCG and DOX/EPI on the secondary structure and particle size of HSA were investigated by CD spectroscopy and DLS, respectively. Moreover, the synergistic cytotoxicity of EGCG and DOX/EPI as well as their complexes with HSA were discussed. Obtained results would provide beneficial information on the combination of EGCG and anthracyclines in clinic.
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Affiliation(s)
- Qingying Guo
- School of Chemistry and Chemical Engineering, Liaocheng University, Liaocheng 252059, China
| | - Min Liu
- School of Chemistry and Chemical Engineering, Liaocheng University, Liaocheng 252059, China; Institute of BioPharmaceutical Research, Liaocheng University, Liaocheng 252059, China.
| | - Yanna Zhao
- Institute of BioPharmaceutical Research, Liaocheng University, Liaocheng 252059, China
| | - Yushu Wu
- Institute of BioPharmaceutical Research, Liaocheng University, Liaocheng 252059, China
| | - Jie Liu
- School of Chemistry and Chemical Engineering, Liaocheng University, Liaocheng 252059, China
| | - Chang Cai
- Institute of BioPharmaceutical Research, Liaocheng University, Liaocheng 252059, China
| | - Yabo Shi
- Institute of BioPharmaceutical Research, Liaocheng University, Liaocheng 252059, China
| | - Jun Han
- Institute of BioPharmaceutical Research, Liaocheng University, Liaocheng 252059, China
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Binding assessment of methylene blue to human serum albumin and poly(acrylic acid): Experimental and computer-aided modeling studies. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.04.144] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Emissive Enhancement of the Singlet Oxygen Chemiluminescence Probe after Binding to Bovine Serum Albumin. Molecules 2019; 24:molecules24132422. [PMID: 31266247 PMCID: PMC6651777 DOI: 10.3390/molecules24132422] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Revised: 06/14/2019] [Accepted: 06/28/2019] [Indexed: 11/29/2022] Open
Abstract
A chemiluminescence probe for singlet oxygen 1O2 (SOCL) was investigated in phosphate buffer saline (PBS), either in the absence of proteins or containing bovine serum albumin (BSA). In the protein-free PBS, the reactivity of SOCL for methylene blue (MB)-photosensitized 1O2 was found to be moderate or low. The reaction yield increased with temperature and/or concentration of dissolved molecular oxygen. Unexpectedly, the presence of BSA boosted both the emissive nature and the thermal stability of the phenoxy-dioxetane intermediate formed in the chemiexcitation pathway. Isothermal titration calorimetry showed that SOCL has a moderate binding affinity for BSA and that entropy forces drive the formation of the SOCL-BSA complex. A model with two identical and independent binding sites was used to fit the binding isotherm data. Co-operative binding was observed when MB was present. Local viscosity factors and/or conformational restrictions of the BSA-bound SOCL phenoxy-dioxetane were proposed to contribute to the formation of the highly emissive benzoate ester during the chemically initiated electron exchange luminescence (CIEEL) process. These results led us to conclude that hydrophobic interactions of the SOCL with proteins can modify the emissive nature of its phenoxy-dioxetane, which should be taken into account when using SOCL or its cell-penetrating peptide derivative in living cells.
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Agrawal R, Thakur Y, Tripathi M, Siddiqi MK, Khan RH, Pande R. Elucidating the binding propensity of naphthyl hydroxamic acid to human serum albumin (HSA): Multi-spectroscopic and molecular modeling approach. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.01.067] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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Sannaikar M, Inamdar (Doddamani) LS, Inamdar SR. Interaction between human serum albumin and toxic free InP/ZnS QDs using multi-spectroscopic study: An excellent alternate to heavy metal based QDs. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.02.041] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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17
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Vardevanyan PO, Antonyan AP, Parsadanyan MA, Shahinyan MA, Mikaelyan MS. Study of Methylene Blue Interaction with Human Serum Albumin. ACTA ACUST UNITED AC 2019. [DOI: 10.1142/s1793048019500012] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The thiosine dye methylene blue (MB) interaction with human serum albumin (HSA) has been studied. MB was revealed to stabilize the native structure of HSA, since the denaturation temperature of the complexes is shifted to higher values in relation to that of the pure protein. It was also revealed that the absorption spectra of the complexes do not change noticeably, while in the fluorescence spectra the maximal intensity of MB decreases with the albumin concentration enhancement. Analysis of the obtained data allows to conclude that the main binding mode of MB to HSA, providing the stabilization of the protein native structure, is the electrostatic mechanism.
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Affiliation(s)
- Poghos O. Vardevanyan
- Department of Biophysics, Faculty of Biology, Yerevan State University, Alex Manoogian 1, Yerevan, 0025, Armenia
| | - Ara P. Antonyan
- Department of Biophysics, Faculty of Biology, Yerevan State University, Alex Manoogian 1, Yerevan, 0025, Armenia
| | - Marine A. Parsadanyan
- Department of Biophysics, Faculty of Biology, Yerevan State University, Alex Manoogian 1, Yerevan, 0025, Armenia
| | - Mariam A. Shahinyan
- Department of Biophysics, Faculty of Biology, Yerevan State University, Alex Manoogian 1, Yerevan, 0025, Armenia
| | - Marieta S. Mikaelyan
- Department of Biophysics, Faculty of Biology, Yerevan State University, Alex Manoogian 1, Yerevan, 0025, Armenia
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18
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Maji A, Beg M, Das S, Chandra Jana G, Jha PK, Islam MM, Hossain M. Spectroscopic study on interaction of Nymphaea nouchali leaf extract mediated bactericidal gold nanoparticles with human serum albumin. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.11.055] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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19
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Cáceres J, Robinson-Duggon J, Tapia A, Paiva C, Gómez M, Bohne C, Fuentealba D. Photochemical behavior of biosupramolecular assemblies of photosensitizers, cucurbit[n]urils and albumins. Phys Chem Chem Phys 2018; 19:2574-2582. [PMID: 28059428 DOI: 10.1039/c6cp07749h] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Biosupramolecular assemblies combining cucurbit[n]urils (CB[n]s) and proteins for the targeted delivery of drugs have the potential to improve the photoactivity of photosensitizers used in the photodynamic therapy of cancer. Understanding the complexity of these systems and how it affects the properties of photosensitizers is the focus of this work. We used acridine orange (AO+) as a model photosensitizer and compared it with methylene blue (MB+) and a cationic porphyrin (TMPyP4+). Encapsulation of the photosensitizers into CB[n]s (n = 7, 8) modified their photoactivity. In particular, for AO+, the photo-oxidation of HSA was enhanced in the presence of CB[7]; meanwhile it was decreased when included into CB[8]. Accordingly, peroxide generation and protein fragmentation were also increased when AO+ was encapsulated into CB[7]. The triplet excited state lifetimes of all the photosensitizers were lengthened by their encapsulation into CB[n]s, while the singlet oxygen quantum yield was enhanced only for AO+ and TMPyP4+, but it decreased for MB+. The results obtained in this work prompt the necessity of further investigating these kinds of hybrid assemblies as drug delivery systems because of their possible applications in biomedicine.
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Affiliation(s)
- Javiera Cáceres
- Laboratorio de Estructuras Biosupramoleculares, Departamento de Química Física, Facultad de Química, Pontificia Universidad Católica de Chile, Santiago, Chile.
| | - José Robinson-Duggon
- Laboratorio de Estructuras Biosupramoleculares, Departamento de Química Física, Facultad de Química, Pontificia Universidad Católica de Chile, Santiago, Chile.
| | - Anita Tapia
- Laboratorio de Estructuras Biosupramoleculares, Departamento de Química Física, Facultad de Química, Pontificia Universidad Católica de Chile, Santiago, Chile.
| | - Constanza Paiva
- Laboratorio de Estructuras Biosupramoleculares, Departamento de Química Física, Facultad de Química, Pontificia Universidad Católica de Chile, Santiago, Chile.
| | - Matías Gómez
- Laboratorio de Estructuras Biosupramoleculares, Departamento de Química Física, Facultad de Química, Pontificia Universidad Católica de Chile, Santiago, Chile.
| | - Cornelia Bohne
- Department of Chemistry, University of Victoria, P.O. Box 1700 STN CSC, Victoria, BC V8W 2Y2, Canada
| | - Denis Fuentealba
- Laboratorio de Estructuras Biosupramoleculares, Departamento de Química Física, Facultad de Química, Pontificia Universidad Católica de Chile, Santiago, Chile.
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20
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Boroujeni MB, Nayeri H. Stabilization of bovine lactoperoxidase in the presence of ectoine. Food Chem 2018; 265:208-215. [PMID: 29884374 DOI: 10.1016/j.foodchem.2018.05.067] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2018] [Revised: 05/13/2018] [Accepted: 05/14/2018] [Indexed: 10/16/2022]
Abstract
Lactoperoxidase (LPO) is a heme peroxidase with various applications in industry and medicine. In this study, the effects of ectoine, as a compatible solute, on the structure, thermal stability, thermodynamic parameters, activity, and stability of LPO have been investigated. The results showed that the catalytic activity of LPO was improved by increasing ectoine concentration. The UV-visible absorption spectroscopy and FTIR spectra studies indicated that ectoine could bind to the LPO spontaneously. Moreover, ectoine increased the enzyme Tm and Gibbs free energy. The fluorescence measurements showed that LPO fluorescence was quenched in the presence of ectoine. The quenching mechanism was probably a static quenching by forming a ground state complex. The thermodynamic parameters indicated that hydrogen bonding and Vander Waals forces played a key role in the LPO-ectoine interaction process. The findings suggest that ectoine could be used as a lactoperoxidase stabilizing agent for industrial or medical purposes.
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Affiliation(s)
- Marziyeh Borjian Boroujeni
- Department of Biochemistry, Falavarjan Branch, Islamic Azad University, P.O.Box 81465-1148, Isfahan, Iran
| | - Hashem Nayeri
- Department of Biochemistry, Falavarjan Branch, Islamic Azad University, P.O.Box 81465-1148, Isfahan, Iran.
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21
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Sannaikar MS, Inamdar LS, Pujar GH, Wari MN, Balasinor NH, Inamdar SR. Comprehensive study of interaction between biocompatible PEG-InP/ZnS QDs and bovine serum albumin. LUMINESCENCE 2017; 33:495-504. [DOI: 10.1002/bio.3438] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Revised: 10/27/2017] [Accepted: 11/13/2017] [Indexed: 11/07/2022]
Affiliation(s)
- M. S. Sannaikar
- Laser Spectroscopy Programme and UGC-CPEPA, Department of Physics; Karnatak University; Dharwad Karnataka India
| | - Laxmi S. Inamdar
- Molecular Endocrinology, Reproduction and Development Laboratory, Department of Zoology; Karnatak University; Dharwad Karnataka India
| | - G. H. Pujar
- Laser Spectroscopy Programme and UGC-CPEPA, Department of Physics; Karnatak University; Dharwad Karnataka India
| | - M. N. Wari
- Laser Spectroscopy Programme and UGC-CPEPA, Department of Physics; Karnatak University; Dharwad Karnataka India
| | - Nafisa H. Balasinor
- Neuroendocrinology Department; National Institute for Research in Reproductive Health; Parel Mumbai India
| | - S. R. Inamdar
- Laser Spectroscopy Programme and UGC-CPEPA, Department of Physics; Karnatak University; Dharwad Karnataka India
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22
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Evidence of bovine serum albumin-viologen herbicide binding interaction and associated structural modifications. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.03.058] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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23
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Beg M, Maji A, Mandal AK, Das S, Jha PK, Hossain M. Spectroscopic investigation on interaction of biogenic, Croton bonplandianum leaves extract mediated potential bactericidal silver nanoparticles with human hemoglobin and human serum albumin. J Biomol Struct Dyn 2017; 36:711-723. [PMID: 28278761 DOI: 10.1080/07391102.2017.1294505] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Maidul Beg
- Department of Chemistry and Chemical Technology, Vidyasagar University, Midnapore 721102, West Bengal, India
| | - Anukul Maji
- Department of Chemistry and Chemical Technology, Vidyasagar University, Midnapore 721102, West Bengal, India
| | - Amit Kumar Mandal
- Department of Microbiology, Vidyasagar University, Midnapore 721102, West Bengal, India
| | - Somnath Das
- Department of Chemistry and Chemical Technology, Vidyasagar University, Midnapore 721102, West Bengal, India
| | - Pradeep K. Jha
- School of Medical Science and Technology, Indian Institute of Technology, Kharagpur 721302, West Bengal, India
| | - Maidul Hossain
- Department of Chemistry and Chemical Technology, Vidyasagar University, Midnapore 721102, West Bengal, India
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24
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Bayraktutan T, Onganer Y. Biophysical influence of coumarin 35 on bovine serum albumin: Spectroscopic study. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 171:90-96. [PMID: 27494219 DOI: 10.1016/j.saa.2016.07.043] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2016] [Revised: 07/18/2016] [Accepted: 07/30/2016] [Indexed: 06/06/2023]
Abstract
The binding mechanism and protein-fluorescence probe interactions between bovine serum albumin (BSA) and coumarin 35 (C35) was investigated by using UV-Vis absorption and fluorescence spectroscopies since they remain major research topics in biophysics. The spectroscopic data indicated that a fluorescence quenching process for BSA-C35 system was occurred. The fluorescence quenching processes were analyzed using Stern-Volmer method. In this regard, Stern-Volmer quenching constants (KSV) and binding constants were calculated at different temperatures. The distance r between BSA (donor) and C35 (acceptor) was determined by exploiting fluorescence resonance energy transfer (FRET) method. Synchronous fluorescence spectra were also studied to observe information about conformational changes. Moreover, thermodynamics parameters were calculated for better understanding of interactions and conformational changes of the system.
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Affiliation(s)
- Tuğba Bayraktutan
- Department of Chemistry, Faculty of Science, Atatürk University, 25240 Erzurum, Turkey
| | - Yavuz Onganer
- Department of Chemistry, Faculty of Science, Atatürk University, 25240 Erzurum, Turkey.
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25
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Chandel TI, Rabbani G, Khan M, Zaman M, Alam P, E. Shahein Y, Hasan Khan R. Binding of anti-cardiovascular drug to serum albumin: an insight in the light of spectroscopic and computational approaches. J Biomol Struct Dyn 2016; 36:54-67. [DOI: 10.1080/07391102.2016.1266968] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Tajalli Ilm Chandel
- Interdisciplinary Biotechnology Unit, Aligarh Muslim University, Aligarh, India
| | - Gulam Rabbani
- School of Medical Biotechnology, YeungNam University, Gyeongsan, Republic of Korea
| | - MohsinVahid Khan
- Interdisciplinary Biotechnology Unit, Aligarh Muslim University, Aligarh, India
| | - Masihuz Zaman
- Interdisciplinary Biotechnology Unit, Aligarh Muslim University, Aligarh, India
| | - Parvez Alam
- Interdisciplinary Biotechnology Unit, Aligarh Muslim University, Aligarh, India
| | - Yasser E. Shahein
- Molecular Biology Department, Genetic Engineering Division, National Research Centre, Cairo, Egypt
| | - Rizwan Hasan Khan
- Interdisciplinary Biotechnology Unit, Aligarh Muslim University, Aligarh, India
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26
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Hassan MF, Rauf A. Synthesis and study on the binding of thiazol-2(3H)-ylidine derivative with human serum albumin using spectroscopic and molecular docking methods. LUMINESCENCE 2016; 32:602-611. [PMID: 27813306 DOI: 10.1002/bio.3227] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2016] [Revised: 08/25/2016] [Accepted: 09/06/2016] [Indexed: 12/25/2022]
Abstract
In this article, a facile and convenient synthesis of thiazol-2(3H)-ylidine derivatives of fatty acid (3a-c) is described. The binding of N'-(4,5-dimethyl-3-penylthiazol-2(3H)-ylidine)octadec-9-enehydrazide (3a) with human serum albumin (HSA) is explored using various spectral methods and molecular docking. Fluorescence quenching results show that 3a induces conformational changes in HSA and the polarity around the tryptophan residues is increased. Stern-Volmer quenching plots at different temperatures (298, 305 and 312 K) show that the fluorescence quenching mechanism is static quenching. Synchronous fluorescence, 3D fluorescence spectra, circular dichroism and Fourier transform infrared spectroscopy are used to determine the structural change in HSA on interaction with 3a. Förster resonance energy transfer analysis shows that the binding distance (r0 = 2.78 nm) between HSA (Trp214) and 3a is within the of range 2-8 nm for quenching to occur. The molecular docking study also confirms that 3a is located in subdomain IIA (site I) of HSA and is stabilized by hydrogen bonding and hydrophobic forces.
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Affiliation(s)
| | - Abdul Rauf
- Department of Chemistry, Aligarh Muslim University, Aligarh, India
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27
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Ursache FM, Aprodu I, Nistor OV, Bratu M, Botez E, Stănciuc N. Probing the heat-induced structural changes in bovine serum albumin by fluorescence spectroscopy and molecular modelling. INT J DAIRY TECHNOL 2016. [DOI: 10.1111/1471-0307.12351] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Florentina-Mihaela Ursache
- Faculty of Food Science and Engineering; Dunarea de Jos University of Galati; Street 111 800201 Galati Romania
| | - Iuliana Aprodu
- Faculty of Food Science and Engineering; Dunarea de Jos University of Galati; Street 111 800201 Galati Romania
| | - Oana-Viorela Nistor
- Faculty of Food Science and Engineering; Dunarea de Jos University of Galati; Street 111 800201 Galati Romania
| | - Mihaela Bratu
- Faculty of Food Science and Engineering; Dunarea de Jos University of Galati; Street 111 800201 Galati Romania
| | - Elisabeta Botez
- Faculty of Food Science and Engineering; Dunarea de Jos University of Galati; Street 111 800201 Galati Romania
| | - Nicoleta Stănciuc
- Faculty of Food Science and Engineering; Dunarea de Jos University of Galati; Street 111 800201 Galati Romania
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28
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Manivel P, Paulpandi M, Murugan K, Benelli G, Ilanchelian M. Probing the interaction of thionine with human serum albumin by multispectroscopic studies and its in vitro cytotoxic activity toward MCF-7 breast cancer cells. J Biomol Struct Dyn 2016; 35:3012-3031. [DOI: 10.1080/07391102.2016.1235513] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Perumal Manivel
- Department of Chemistry, Bharathiar University, Coimbatore 641046, Tamil Nadu, India
| | - Manickam Paulpandi
- Proteomics Lab, Department of Zoology, Bharathiar University, Coimbatore 641046, Tamil Nadu, India
| | - Kadarkarai Murugan
- Proteomics Lab, Department of Zoology, Bharathiar University, Coimbatore 641046, Tamil Nadu, India
| | - Giovanni Benelli
- Insect Behavior Group, Department of Agriculture, Food and Environment, University of Pisa, via del Borghetto 80, Pisa 56124, Italy
- The BioRobotics Institute, Sant’Anna School of Advanced Studies, Viale Rinaldo Piaggio 34, Pontedera 56025, Italy
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29
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Selvam S, Sarkar I. Bile salt induced solubilization of methylene blue: Study on methylene blue fluorescence properties and molecular mechanics calculation. J Pharm Anal 2016; 7:71-75. [PMID: 29404020 PMCID: PMC5686871 DOI: 10.1016/j.jpha.2016.07.006] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2016] [Revised: 06/25/2016] [Accepted: 07/20/2016] [Indexed: 11/22/2022] Open
Abstract
Methylene blue (MB) is a hydrophobic drug molecule, having importance both as a staining reagent and pharmaceutical agent. MB is strongly fluorescent, with an emission peak at 686 nm (λex 665 nm). In the study, the possibility of MB as an extrinsic fluorophore to study the micellization behavior of bile salts (BSs) was carried out. Since BSs are drug delivery systems, the solubilization of hydrophobic MB drug molecule by BSs was achieved and the nature of association of MB with BS media, namely sodium cholate (NaC) and sodium deoxycholate (NaDC) was evaluated. Change in the photophysical properties of MB is monitored through fluorescence intensity and fluorescence anisotropy at emission peak, 686 nm of MB. Molecular mechanics calculations were carried out to evaluate the MB–BS association. The estimated heat of formation, ΔHf values are –625.19 kcal/mol for MB–NaC and –757.48 kcal/mol for MB–NaDC. The photophysical study also revealed that MB reports the step-wise aggregation pattern of BSs media, as an extrinsic fluorescence probe.
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Affiliation(s)
- Susithra Selvam
- Department of Chemistry, Vel Tech University, Avadi, Chennai 600062, Tamilnadu, India
| | - Ivy Sarkar
- Department of Chemistry, Indian Institute of Technology Madras, Chennai 600036, Tamilnadu, India
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30
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Ding F, Xie Y, Peng W, Peng YK. Measuring the bioactivity and molecular conformation of typically globular proteins with phenothiazine-derived methylene blue in solid and in solution: A comparative study using photochemistry and computational chemistry. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2016; 158:69-80. [PMID: 26950891 DOI: 10.1016/j.jphotobiol.2016.02.029] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2015] [Revised: 02/13/2016] [Accepted: 02/15/2016] [Indexed: 11/29/2022]
Abstract
Methylene blue is a phenothiazine agent, that possesses a diversity of biomedical and biological therapeutic purpose, and it has also become the lead compound for the exploitation of other pharmaceuticals such as chlorpromazine and the tricyclic antidepressants. However, the U.S. Food and Drug Administration has acquired cases of detrimental effects of methylene blue toxicities such as hemolytic anemia, methemoglobinemia and phototoxicity. In this work, the molecular recognition of methylene blue by two globular proteins, hemoglobin and lysozyme was characterized by employing fluorescence, circular dichroism (CD) along with molecular modeling at the molecular scale. The recognition of methylene blue with proteins appears fluorescence quenching via static type, this phenomenon does cohere with time-resolved fluorescence lifetime decay that nonfluorescent protein-drug conjugate formation has a strength of 10(4)M(-1), and the primary noncovalent bonds, that is hydrogen bonds, π-conjugated effects and hydrophobic interactions were operated and remained adduct stable. Meantime, the results of far-UV CD and synchronous fluorescence suggest that the α-helix of hemoglobin/lysozyme decreases from 78.2%/34.7% (free) to 58.7%/23.8% (complex), this elucidation agrees well with the elaborate description of three-dimensional fluorescence showing the polypeptide chain of proteins partially destabilized upon conjugation with methylene blue. Furthermore, both extrinsic fluorescent indicator and molecular modeling clearly exhibit methylene blue is situated within the cavity constituted by α1, β2 and α2 subunits of hemoglobin, while it was located at the deep fissure on the lysozyme surface and Trp-62 and Trp-63 residues are nearby. With the aid of computational analyses and combining the wet experiments, it can evidently be found that the recognition ability of proteins for methylene blue is patterned upon the following sequence: lysozyme<hemoglobin<albumin. Basically, the distinction originates from different spatial structures of proteins and noncovalent interactions between proteins and methylene blue. In addition, biological relevance of the biorecognition of methylene blue with proteins was briefly discussed. We hope that this study could provide further standpoint so that one explore the biological activity of methylene blue and also phenothiazines.
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Affiliation(s)
- Fei Ding
- College of Agriculture and Plant Protection, Qingdao Agricultural University, Qingdao 266109, China; Department of Chemistry, China Agricultural University, Beijing 100193, China; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, United States
| | - Yong Xie
- State Key Laboratory of the Discovery and Development of Novel Pesticide, Shenyang Research Institute of Chemical Industry Co. Ltd., Shenyang 110021, China
| | - Wei Peng
- College of Agriculture and Plant Protection, Qingdao Agricultural University, Qingdao 266109, China; College of Food Science and Engineering, Qingdao Agricultural University, Qingdao 266109, China.
| | - Yu-Kui Peng
- Center for Food Quality Supervision & Testing, Ministry of Agriculture, College of Food Science & Engineering, Northwest A&F University, Yangling 712100, China
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31
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Tripathi KM, Sonker AK, Bhati A, Bhuyan J, Singh A, Singh A, Sarkar S, Sonkar SK. Large-scale synthesis of soluble graphitic hollow carbon nanorods with tunable photoluminescence for the selective fluorescent detection of DNA. NEW J CHEM 2016. [DOI: 10.1039/c5nj02037a] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
A high-yield synthesis of water-soluble photoluminescent carbon nanorods is described. The wsCNRs were used for the selective determination of DNA molecules via a fluorescent turn-off/turn-on mechanism.
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Affiliation(s)
| | - Amit Kumar Sonker
- Department of Materials Science & Engineering
- Indian Institute of Technology Kanpur
- Kanpur-208016
- India
| | - Anshu Bhati
- Department of Chemistry
- Malaviya National Institute of Technology
- Jaipur-302017
- India
| | - Jagannath Bhuyan
- Department of Chemistry
- Indian Institute of Technology Kanpur
- Kanpur-208016
- India
| | - Anupriya Singh
- Department of Chemistry
- Malaviya National Institute of Technology
- Jaipur-302017
- India
| | - Ajay Singh
- Department of Chemistry
- Indian Institute of Technology Kanpur
- Kanpur-208016
- India
| | - Sabyasachi Sarkar
- Department of Chemistry
- Indian Institute of Engineering Science and Technology
- Howrah-711103
- India
| | - Sumit Kumar Sonkar
- Department of Chemistry
- Malaviya National Institute of Technology
- Jaipur-302017
- India
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32
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Zeinabad HA, Kachooei E, Saboury AA, Kostova I, Attar F, Vaezzadeh M, Falahati M. Thermodynamic and conformational changes of protein toward interaction with nanoparticles: a spectroscopic overview. RSC Adv 2016. [DOI: 10.1039/c6ra16422f] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
Nanoparticles (NPs) in different forms have been widely used in medicine and pharmaceutics for diagnosis and drug delivery.
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Affiliation(s)
- Hojjat Alizadeh Zeinabad
- Department of Nanotechnology
- Faculty of Advance Science and Technology
- Pharmaceutical Sciences Branch
- Islamic Azad University (IAUPS)
- Tehran
| | - Ehsan Kachooei
- Institute of Biochemistry and Biophysics
- University of Tehran
- Tehran
- Iran
| | - Ali Akbar Saboury
- Institute of Biochemistry and Biophysics
- University of Tehran
- Tehran
- Iran
| | - Irena Kostova
- Department of Chemistry
- Faculty of Pharmacy
- Medical University
- Sofia 1000
- Bulgaria
| | - Farnoosh Attar
- Department of Biology
- Faculty of Food Industry & Agriculture
- Standard Research Institute (SRI)
- Karaj
- Iran
| | - Mahsa Vaezzadeh
- Department of Biology
- Research and Science Branch
- Islamic Azad University
- Tehran
- Iran
| | - Mojtaba Falahati
- Department of Nanotechnology
- Faculty of Advance Science and Technology
- Pharmaceutical Sciences Branch
- Islamic Azad University (IAUPS)
- Tehran
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33
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Synthesis, characterization and DFT study of new water-soluble aluminum(III), gallium(III) and indium(III) Schiff base complexes: effect of metal on the binding propensity with bovine serum albumin in water. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2015. [DOI: 10.1007/s13738-015-0751-4] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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34
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Moeiniafshari AA, Zarrabi A, Bordbar AK. Exploring the interaction of naringenin with bovine beta-casein nanoparticles using spectroscopy. Food Hydrocoll 2015. [DOI: 10.1016/j.foodhyd.2015.04.036] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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35
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He LL, Wang YX, Wu XX, Liu XP, Wang X, Liu B, Wang X. Enhancement of the binding affinity of methylene blue to site I in human serum albumin by cupric and ferric ions. LUMINESCENCE 2015; 30:1380-8. [PMID: 25833007 DOI: 10.1002/bio.2910] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2014] [Revised: 03/01/2015] [Accepted: 03/02/2015] [Indexed: 12/18/2022]
Abstract
In this work, the binding characteristics of methylene blue (MB) to human serum albumin (HSA) and the influence of Cu(2+) and Fe(3+) on the binding affinity of MB to HSA were investigated using fluorescence, absorption, circular dichroism (CD) spectroscopy and molecular modelling. The results of competitive binding experiments using the site probes ketoprofen and ibuprofen as specific markers suggested that MB was located in site I within sub-domain IIA of HSA. The molecular modelling results agreed with the results of competitive site marker experiments and the results of CD spectra indicated that the interaction between MB and HSA caused the conformational changes in HSA. The binding affinity of MB to HSA was enhanced but to a different extent in the presence of Cu(2+) and Fe(3+), respectively, which indicated that the influence of different metal ions varied. Enhancement of the binding affinity of MB to HSA in the presence of Cu(2+) is due to the formation of Cu(2+)-HSA complex leading to the conformational changes in HSA, whereas in the presence of Fe(3+), enhancement of the binding affinity is due to the greater stability of the Fe(3+)-HSA-MB complex compared with the MB-HSA complex.
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Affiliation(s)
- Ling-Ling He
- College of Applied Chemistry, Shenyang University of Chemical Technology, Shenyang, 110142, China
| | - Yong-Xia Wang
- College of Applied Chemistry, Shenyang University of Chemical Technology, Shenyang, 110142, China
| | - Xiao-Xia Wu
- College of Applied Chemistry, Shenyang University of Chemical Technology, Shenyang, 110142, China
| | - Xian-Ping Liu
- College of Applied Chemistry, Shenyang University of Chemical Technology, Shenyang, 110142, China
| | - Xin Wang
- School of Pharmaceutical Sciences, Liaoning University, Shenyang, 110036, China
| | - Bin Liu
- School of Pharmaceutical Sciences, Liaoning University, Shenyang, 110036, China
| | - Xin Wang
- School of Pharmaceutical Sciences, Liaoning University, Shenyang, 110036, China
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36
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Chaturvedi SK, Ahmad E, Khan JM, Alam P, Ishtikhar M, Khan RH. Elucidating the interaction of limonene with bovine serum albumin: a multi-technique approach. MOLECULAR BIOSYSTEMS 2015; 11:307-16. [DOI: 10.1039/c4mb00548a] [Citation(s) in RCA: 191] [Impact Index Per Article: 21.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Mechanistic insight into the BSA–limonene interaction: biophysical and molecular docking approach.
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Affiliation(s)
| | - Ejaz Ahmad
- Interdisciplinary Biotechnology Unit
- Aligarh Muslim University
- Aligarh 202002
- India
| | - Javed Masood Khan
- Interdisciplinary Biotechnology Unit
- Aligarh Muslim University
- Aligarh 202002
- India
| | - Parvez Alam
- Interdisciplinary Biotechnology Unit
- Aligarh Muslim University
- Aligarh 202002
- India
| | - Mohd Ishtikhar
- Interdisciplinary Biotechnology Unit
- Aligarh Muslim University
- Aligarh 202002
- India
| | - Rizwan Hasan Khan
- Interdisciplinary Biotechnology Unit
- Aligarh Muslim University
- Aligarh 202002
- India
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37
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Manivel P, Anandakumar S, Ilanchelian M. Exploring the interaction of the photodynamic therapeutic agent thionine with bovine serum albumin: multispectroscopic and molecular docking studies. LUMINESCENCE 2014; 30:729-39. [DOI: 10.1002/bio.2812] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2014] [Revised: 09/24/2014] [Accepted: 10/06/2014] [Indexed: 01/02/2023]
Affiliation(s)
- Perumal Manivel
- Department of Chemistry; Bharathiar University; Coimbatore India
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38
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Tripathi KM, Sonker AK, Sonkar SK, Sarkar S. Pollutant soot of diesel engine exhaust transformed to carbon dots for multicoloured imaging of E. coli and sensing cholesterol. RSC Adv 2014. [DOI: 10.1039/c4ra03720k] [Citation(s) in RCA: 69] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
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39
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Kishikawa N, Ohyama K, Saiki A, Matsuo A, Ali MFB, Wada M, Nakashima K, Kuroda N. A novel lophine-based fluorescence probe and its binding to human serum albumin. Anal Chim Acta 2013; 780:1-6. [DOI: 10.1016/j.aca.2013.04.003] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2013] [Accepted: 04/02/2013] [Indexed: 11/16/2022]
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40
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Binding of serum albumins with bioactive substances – Nanoparticles to drugs. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY C-PHOTOCHEMISTRY REVIEWS 2013. [DOI: 10.1016/j.jphotochemrev.2012.09.001] [Citation(s) in RCA: 160] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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41
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Caruso IP, Vilegas W, Fossey MA, Cornélio ML. Exploring the binding mechanism of Guaijaverin to human serum albumin: fluorescence spectroscopy and computational approach. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2012; 97:449-455. [PMID: 22820048 DOI: 10.1016/j.saa.2012.06.043] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2012] [Revised: 06/22/2012] [Accepted: 06/25/2012] [Indexed: 06/01/2023]
Abstract
The Guaijaverin (Gua) is a polyphenolic substance which exhibits some pharmacological activities such as antibacterial and antioxidant activities. Here we have investigated the binding of Gua with human serum albumin (HSA) at physiological pH 7.0. In this study, the fluorescence spectroscopy, ab initio and molecular modeling calculations were applied. The Stern-Volmer quenching constant (K(SV)) and its modified form (K(a)) were calculated at 298, 303 and 308 K, with the corresponding thermodynamic parameters ΔH, ΔG and ΔS as well. The fluorescence quenching method was used to determine the number of binding sites (n) and binding constants (K(b)) values at 298, 303 and 308 K. The distance between donor (HSA) and acceptor (Gua) was estimated according to fluorescence resonance energy transfer. The geometry optimization of Gua was performed in its ground state by using ab initio DFT/B3LYP functional with a 6-31G(d,p) basis set used in calculations. Molecular modeling calculation indicated that the Gua is located within the hydrophobic pocket of the subdomain IIA of HSA. The theoretical results obtained by molecular modeling were corroborated by fluorescence spectroscopy data.
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Affiliation(s)
- Icaro P Caruso
- Instituto de Biociências, Letras e Ciências Exatas (IBILCE), UNESP, Rua Cristovão Colombo, 2265, CEP 15054-000, São José do Rio Preto, SP, Brazil.
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42
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Yang GD, Li C, Zeng AG, Zhao Y, Yang R, Bian XL. Fluorescence spectroscopy of osthole binding to human serum albumin. J Pharm Anal 2012; 3:200-204. [PMID: 29403817 PMCID: PMC5760984 DOI: 10.1016/j.jpha.2012.10.002] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2012] [Accepted: 10/13/2012] [Indexed: 12/02/2022] Open
Abstract
The interaction of human serum albumin (HSA) with osthole was investigated by fluorescence spectroscopy. Osthole can quench the fluorescence of HSA and the quenching mechanism is a static process. The binding site number n and apparent binding constant K were measured at different temperatures. The thermodynamic parameters ΔH0, ΔG0 and ΔS0 were calculated at different temperatures. The results indicated that electrostatic forces played a major role in the interaction of osthole with HSA. Results of osthole synchronous fluorescence and UV absorption spectra showed that the microenvironment and conformation of HSA were changed.
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Affiliation(s)
- Guang-De Yang
- School of Medicine, Xi'an Jiaotong University, No. 76 Yanta Westroad, Shaanxi Province, Xi'an 710061, PR China
| | - Cong Li
- School of Medicine, Xi'an Jiaotong University, No. 76 Yanta Westroad, Shaanxi Province, Xi'an 710061, PR China
| | - Ai-Guo Zeng
- School of Medicine, Xi'an Jiaotong University, No. 76 Yanta Westroad, Shaanxi Province, Xi'an 710061, PR China
| | - Yuan Zhao
- Xi'an Tuberculosis and Thoracic Tumor Hospital, Shaanxi 710061, PR China
| | - Rong Yang
- School of Medicine, Xi'an Jiaotong University, No. 76 Yanta Westroad, Shaanxi Province, Xi'an 710061, PR China
| | - Xiao-Li Bian
- School of Medicine, Xi'an Jiaotong University, No. 76 Yanta Westroad, Shaanxi Province, Xi'an 710061, PR China
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43
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Jiang H, Chen R, Wang H, Pu H. Interaction of cyproheptadine hydrochloride with human serum albumin using spectroscopy and molecular modeling methods. LUMINESCENCE 2012; 28:244-52. [DOI: 10.1002/bio.2374] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2011] [Revised: 03/06/2012] [Accepted: 03/09/2012] [Indexed: 11/11/2022]
Affiliation(s)
- Hua Jiang
- Bio‐engineering Institute, College of Life Science and TechnologyJinan University Guangzhou 510632 China
| | - Rongrong Chen
- Bio‐engineering Institute, College of Life Science and TechnologyJinan University Guangzhou 510632 China
| | - Hongcui Wang
- Bio‐engineering Institute, College of Life Science and TechnologyJinan University Guangzhou 510632 China
| | - Hanlin Pu
- Bio‐engineering Institute, College of Life Science and TechnologyJinan University Guangzhou 510632 China
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44
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Bracchitta G, Catalfo A, De Guidi G. Photoinduced protein modifications by methylene blue and naproxen. Photochem Photobiol Sci 2012; 11:1886-96. [DOI: 10.1039/c2pp25067e] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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45
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Sheng L, Li L, Zhou J, Song G. Application of Cationic Gemini Surfactant 12-3-12 and Methylene Blue in Simple Detection of DNA and Investigation of Interaction Mechanism. J DISPER SCI TECHNOL 2011. [DOI: 10.1080/01932691.2010.488481] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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46
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Dong S, Yu Z, Li Z, Huang T. The Interaction of HIV-1 Inhibitor 3,3',3",3‴-Ethylenetetrakis-4-Hydroxycoumarin with Bovine Serum Albumin at Different pH. B KOREAN CHEM SOC 2011. [DOI: 10.5012/bkcs.2011.32.6.2063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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47
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Study of the Binding of Herbacetin to Bovine Serum Albumin by Fluorescence Spectroscopy. J SOLUTION CHEM 2011. [DOI: 10.1007/s10953-011-9684-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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48
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Hu X, Cui S, Liu JQ. Fluorescence studies of interaction between flavonol p-coumaroylglucoside tiliroside and bovine serum albumin. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2010; 77:548-553. [PMID: 20615751 DOI: 10.1016/j.saa.2010.06.016] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2010] [Accepted: 06/11/2010] [Indexed: 05/29/2023]
Abstract
In this paper, the interaction between flavonol p-coumaroylglucoside tiliroside and BSA was investigated by fluorescence quenching spectra, synchronous fluorescence spectra, and three-dimensional fluorescence spectra under simulative physiological conditions. It was proved that the fluorescence quenching of BSA by tiliroside was mainly a result of the formation of a tiliroside-BSA complex. The modified Stern-Volmer quenching constant and the corresponding thermodynamic parameters DeltaH, DeltaG and DeltaS at different temperatures were calculated. The results indicated that electrostatic interactions were the predominant intermolecular forces in stabilizing the complex. The distance r=3.95 nm between the donor (BSA) and acceptor (tiliroside) was obtained according to Förster's nonradioactive energy transfer theory. The synchronous fluorescence and three-dimensional fluorescence spectra results showed the microenvironment and conformation of BSA were changed in the binding reaction.
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Affiliation(s)
- Xiaoli Hu
- College of Chemistry and Chemical Engineering, Mianyang Normal University, No. 30, Xianren Road, Youxian District, Mianyang, PR China
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49
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Moyon NS, Mitra S. On the interaction of luminol with human serum albumin: Nature and thermodynamics of ligand binding. Chem Phys Lett 2010. [DOI: 10.1016/j.cplett.2010.08.029] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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50
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Andrade-Eiroa Á, de-Armas G, Estela JM, Cerdà V. Critical approach to synchronous spectrofluorimetry. II. Trends Analyt Chem 2010. [DOI: 10.1016/j.trac.2010.05.002] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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