Enhancement of the diesel oil degradation ability of a marine bacterial strain by immobilization on a novel compound carrier material

Study on the Changes in Immobilized Petroleum-Degrading Bacteria Beads in a Continuous Bioreactor Related to Physicochemical Performance, Degradation Ability, and Microbial Community

Continuous bioreactors for petroleum degradation and the effect factors of these bioreactors have rarely been mentioned in studies. In addition, indigenous bacteria living in seawater could influence the performance of continuous bioreactors with respect to petroleum degradation in practice. In this paper, a bioreactor fitted with immobilized petroleum-degrading bacteria beads was designed for further research. The results indicated that the diesel degradation rate of the bioreactor could remain above 50% over 27 days, while degradation performance decreased with bioremediation time. Intriguingly, the diameters of immobilized petroleum-degrading bacteria beads were reduced by 32.49% after 45 days remediation compared with the initial size of the immobilized petroleum-degrading bacteria beads. Change in immobilized petroleum-degrading bacteria beads was considered to correlate remarkably with reduced degradation efficiency. Therefore, this paper will be helpful for further study and improvement of bioreactors in the practical context of oil-spill accident recovery.

Application of biochar immobilized microorganisms for pollutants removal from wastewater: A review

Microbial immobilization technology (MIT) has been rapidly developed and used to remove pollutants from water/wastewater in recent years, owing to its high stability, rapid reaction rate, and high activity. Microbial immobilization carrier with low cost and high removal efficiency is the key of MIT. Biochar is considered to be an efficient carrier for microbial immobilization because of its high porosity and good adsorption effect, which can provide a habitat for microorganisms. The use of biochar immobilized microorganisms to treat different pollutants in wastewater is a promising treatment method. Compared with the other biological treatment technology, biochar immobilized microorganisms can improve microbial abundance, repeated utilization ratio, microbial metabolic capacity, etc. However, current research on this method is still in its infancy. Little attention has been paid to the interaction mechanisms between biochar and microorganisms, and many studies are only carried out in the laboratory. There are still problems such as difficult recovery after use and secondary pollution caused by residual pollutants after biochar adsorption, which need further clarification. To have comprehensive digestion and an in-depth understanding of biochar immobilized microorganisms technology in wastewater treatment, the wastewater treatment methods based on biochar are firstly summarized in this review. Then the mechanisms of immobilized microorganisms were explored, and the applications of biochar immobilized microorganisms in wastewater were systematically reviewed. Finally, suggestions and perspectives for future research and practical application are put forward.

Immobilization of enzymes for bioremediation: A future remedial and mitigating strategy

Over the years, extensive urbanization and industrialization have led to xenobiotics contamination of the environment and also posed a severe threat to human health. Although there are multiple physical and chemical techniques for xenobiotic pollutants management, bioremediation seems to be a promising technology from the environmental perspective. It is an eco-friendly and low-cost method involving the application of microbes, plants, or their enzymes to degrade xenobiotics into less toxic or non-toxic forms. Moreover, bioremediation involving enzymes has gained an advantage over microorganisms or phytoremediation due to better activity for pollutant degradation with less waste generation. However, the significant disadvantages associated with the application of enzymes are low stability (storage, pH, and temperature) as well as the low possibility of reuse as it is hard to separate from reaction media. The immobilization of enzymes without affecting their activity provides a possible solution to the problems and allows reusability by easing the process of separation with improved stability to various environmental factors. The present communication provides an overview of the importance of enzyme immobilization in bioremediation, carrier selection, and immobilization methods, as well as the pros and cons of immobilization and its prospects.

Immobilization of Ochrobactrum sp. on Biochar/Clay Composite Particle: Optimization of Preparation and Performance for Nitrogen Removal

The objective of this study was to prepare biochar/clay composite particle (BCCP) as carrier to immobilize Ochrobactrum sp. to degrade ammonia nitrogen (NH₄ ⁺-N), and the effects of calcined program and immobilizing material were investigated. Results reflected that the parameters were as follows: calcined temperature 400°C, heating rate 20°C min^-1, and holding time 2 h, and the adsorption capacity could reach 0.492 mg g^-1. Sodium alginate/polyvinyl alcohol, as embedding material, jointed with NH₄ ⁺-N adsorption process and then degraded by Ochrobactrum sp. with 79.39% degradation efficiency at 168 h. Immobilizing Ochrobactrum sp. could protect strain from high salt concentration to achieve the exceeding degradation efficiency than free bacteria, but could not block the impact of low temperature.

Enhanced cadmium removal by growing Bacillus cereus RC-1 immobilized on different magnetic biochars through simultaneous adsorption and bioaccumulation

Biosorption of cadmium by growing bacteria immobilized on the three magnetic biochars derived from rice straw (MRSB-pellet), sewage sludge (MSSB-pellet), and chicken manure (MCMB-pellet) was investigated, respectively. Total biosorption capacity of the pellets was tested under varying range of pH, culture time, and initial Cd²⁺ concentration. The maximum biosorption capacity of 93.02 mg/g was obtained with MRSB-pellet, followed by MSSB-pellet (68.02 mg/g) and MCMB-pellet (63.95 mg/g). The biosorption by these immobilized bacterial pellets was more effective than free bacteria; this enhancement could be the result of simultaneous adsorption and bioaccumulation, mainly resulting from magnetic biochar carrier and active bacteria, respectively. The biosorption process by immobilized pellets was primarily driven by ion exchange and complexation, which jointly contributed 73.56% (MRSB-pellet) to 78.62% (MSSB-pellet) of the total adsorption, while the mechanisms of chemical precipitation and physical adsorption could averagely contribute 6.91% (MSSB-pellet) and 11.24% (MRSB-pellet), respectively. Intracellular accumulation was comparably tiny among these mechanisms accounting for 4.30-5.92% of total biosorption; in turn, it would keep intracellular Cd²⁺ concentration below a toxic threshold to maintain cell activity. These suggested that magnetic biochar immobilized bacteria, particularly MRSB-pellet, could be used as an effective biosorbent to remove the Cd²⁺ from the growth medium. This study further deepened our understanding of biosorption process by microorganism immobilized onto magnetic biochar for the metal removal.

Bioremediation of oily seawater by Bacteria immobilization on a novel carrier material containing nutrients

A novel carrier material was obtained by coating puffed rhubarb rice (PRR) with calcium alginate (CA) membrane. The carrier material was prepared to contain oil-degrading bacterial strains and inorganic nutrients through entrapping them in different locations. This formulation possessed floatability, biodegradability and nutrient slow-release properties. Therefore, it could be applied for oil biodegradation on seawater surfaces. For controlling the release rate of nutrients, the optimal preparation technique was established. The number of viable cells immobilized on the carrier material reached 2 × 10⁹ CFU/g. This formulation could be stored at -20 °C for three months without a significant decrease in the number of viable immobilized cells (4 × 10⁸ CFU/g). Scanning electron microscope (SEM) results showed that the cells were immobilized on the outer CA membrane, and the inorganic nutrients were entrapped in the inner PRR and CA membrane. The immobilized cells were able to remove 86% of the diesel oil at an initial diesel oil concentration of 1% (v/v), an incubation temperature of 37 °C, during three days of incubation. Gas chromatography-mass spectrometry (GC-MS) analysis results showed that most components of diesel oil were degraded by the formulations.

Bioremediation of Petroleum Hydrocarbons in Seawater: Prospects of Using Lyophilized Native Hydrocarbon-Degrading Bacteria

This work aimed to develop a bioremediation product of lyophilized native bacteria to respond to marine oil spills. Three oil-degrading bacterial strains (two strains of Rhodococcus erythropolis and one Pseudomonas sp.), isolated from the NW Portuguese coast, were selected for lyophilization after biomass growth optimization (tested with alternative carbon sources). Results indicated that the bacterial strains remained viable after the lyophilization process, without losing their biodegradation potential. The biomass/petroleum ratio was optimized, and the bioremediation efficiency of the lyophilized bacterial consortium was tested in microcosms with natural seawater and petroleum. An acceleration of the natural oil degradation process was observed, with an increased abundance of oil-degraders after 24 h, an emulsion of the oil/water layer after 7 days, and an increased removal of total petroleum hydrocarbons (47%) after 15 days. This study provides an insight into the formulation and optimization of lyophilized bacterial agents for application in autochthonous oil bioremediation.

Synergistic adsorption and biodegradation of heavy crude oil by a novel hybrid matrix containing immobilized Bacillus licheniformis: Aqueous phase and soil bioremediation

Recently, slurry phase bioremediation as a simple and economical method is shown to be a successful technique for remediation of clayey soils. Besides, the use of microbial cell immobilization as a promising technique has drawn the attention of some researchers. The primary objective of this survey is to examine the synergistic adsorption and biodegradation performance of heavy crude oil by an isolated Bacillus licheniformis immobilized in a novel hybrid matrix (PUF/alginate/microbial cell) in aqueous phase. Isotherm studies and adsorption kinetics of crude oil on PUF matrix were carried out and their results revealed a good correlation between experimental data and Langmuir's isotherm and maximum monolayer coverage was found out to be 1.25 g/g PUF. The other objective of this research is examination of hybrid matrix in slurry phase bioremediation of heavy crude oil polluted clayey soil as a reluctant model soil. In order to model, optimize, and investigate the factors affecting the total organic carbon (TOC) reduction, response surface methodology (RSM) was applied. For this purpose, the effect of three variables including crude oil concentration (5000-25,000 mg/kg dry soil), soil salinity (0-10%), and water to soil ratio (WSR: 2-10) have been studied. In this study, TOC reduction was achieved in ranging from 39% to 80% in crude oil polluted soil after 21 days. Additionally, experiments by polyurethane foam (PUF)-immobilized cell, alginate-immobilized cell, and freely cell suspended systems were conducted to compare the performance of hybrid-immobilized cell with other systems. Our results showed the superiority of immobilized cells in hybrid matrix of PUF/alginate compared to other immobilized cell (IC) and free cell (FC) systems. Overall, the results indicated that the hybrid matrix with simultaneous adsorption-biodegradation capacity is potentially suitable for further development for oil spill treatment and it can be used as an efficient cleaning method in TOC removal from actual polluted soils.

Biotechnological applications of marine bacteria in bioremediation of environments polluted with hydrocarbons and plastics

Marine ecosystems are some of the most adverse environments on Earth and contain a considerable portion of the global bacterial population, and some of these bacterial species play pivotal roles in several biogeochemical cycles. Marine bacteria have developed different molecular mechanisms to address fluctuating environmental conditions, such as changes in nutrient availability, salinity, temperature, pH, and pressure, making them attractive for use in diverse biotechnology applications. Although more than 99% of marine bacteria cannot be cultivated with traditional microbiological techniques, several species have been successfully isolated and grown in the laboratory, facilitating investigations of their biotechnological potential. Some of these applications may contribute to addressing some current global problems, such as environmental contamination by hydrocarbons and synthetic plastics. In this review, we first summarize and analyze recently published information about marine bacterial diversity. Then, we discuss new literature regarding the isolation and characterization of marine bacterial strains able to degrade hydrocarbons and petroleum-based plastics, and species able to produce biosurfactants. We also describe some current limitations for the implementation of these biotechnological tools, but also we suggest some strategies that may contribute to overcoming them. KEY POINTS: • Marine bacteria have a great metabolic capacity to degrade hydrocarbons in harsh conditions. • Marine environments are an important source of new bacterial plastic-degrading enzymes. • Secondary metabolites from marine bacteria have diverse potential applications in biotechnology.

Efficient biotransformation of sulfide in anaerobic sequencing batch reactor by composite microbial agent: performance optimization and microbial community analysis

Sulfur-containing wastewater is very common as an industrial waste, yet a high-efficiency composite microbial agent for sulfur-containing wastewater treatment is still lacking. In this work, three novel and efficient desulfurizing bacteria were isolated from the sewage treatment tank of Zhejiang Satellite Energy Co., Ltd. They were identified as Brucella melitensis (S1), Ochrobactrum oryzae (S8), and Achromobacter xylosoxidans (S9). These three strains of bacteria were responsible for the oxidative metabolism of sodium sulfide via a similar polythionate pathway, which could be expressed as follows: S^2-→S₂O₃^2-/S⁰→SO₃^2-→SO₄^2-. Activated carbon, wheat bran, and diatomite at 1:1:1 ratio are used as carriers to construct a composite microbial agent containing the three bacteria. The desulfurization efficiency of 95% was predicted by response surface methodology under the following optimum conditions: the dosage of the inoculum was 3 g/L, pH 7.86, and temperature of 39 °C. Additionally, the impact resistance was studied in the anaerobic sequencing batch reactor. The removal capacity of microbial agent reached 98%. High-throughput analysis showed that composite microbial agent increased bacterial evenness and diversity, and the relative abundance of Brucellaceae increased from 5.04 to 8.79% in the reactor. In the process of industrial wastewater transformation, the transformation rate of sulfide by composite microbial agent was maintained between 70 and 81%. The composite microbial agent had potential for the treatment of sulfur-containing wastewater.

Advanced materials for immobilization of purple phototrophic bacteria in bioremediation of oil-polluted wastewater

Oil pollution which results from industrial activities, especially oil and gas industry, has become a serious issue. Cinder beats (CB), coconut fiber (CF) and polyurethane foam (PUF) are promising immobilization carriers for crude oil biodegradation because they are inexpensive, nontoxic, and non-polluting. The present investigation was aimed to evaluate this advanced technology and compare the efficiency of these immobilization carriers on supporting purple phototrophic bacterial (PPB) strains in hydrocarbon biodegradation of crude oil contaminated seawater. The surface of these biocarriers was supplemented with crude oil polluted seawater and immobilized by PPB strains, Rhodopseudomonas sp. DD4, DQ41 and FO2. Through scanning electron microscopy (SEM), the bacterial cells were shown to colonize and attach strongly to these biocarriers. The bacteria-driven carrier systems degraded over 84.2% supplemented single polycyclic aromatic hydrocarbons (PAHs). The aliphatic and aromatic components in crude oil that treated with carrier-immobilized consortia were degraded remarkably after 14 day-incubation. Among the three biocarriers, removal of the crude oil by CF-bacteria system was the highest (nearly 100%), followed by PUF-bacteria (89.5%) and CB-bacteria (86.3%) with the initial crude oil concentration was 20 g/L. Efficiency of crude oil removal by CB-bacteria and PUF-bacteria were 86.3 and 89.5%, respectively. Till now, the studies on crude oil degradation by mixture species biofilms formed by PPB on different carriers are limited. The present study showed that the biocarriers of an oil-degrading consortium could be made up of waste materials that are cheap and eco-friendly as well as augment the biodegradation of oil-contaminated seawater.

Biodegradation of crude oil using self-immobilized hydrocarbonoclastic deep sea bacterial consortium

Hydrocarbonoclastic bacterial consortium that utilizes crude oil as carbon and energy source was isolated from marine sediment collected at a depth of 2100 m. Molecular characterization by 16S rRNA gene sequences confirmed that these isolates as Oceanobacillus sp., Nesiotobacter sp., Ruegeria sp., Photobacterium sp., Enterobacter sp., Haererehalobacter sp., Exiguobacterium sp., Acinetobacter sp. and Pseudoalteromonas sp. Self-immobilized consortium degraded more than 85% of total hydrocarbons after 10 days of incubation with 1% (v/v) of crude oil and 0.05% (v/v) of Tween 80 (non-ionic surfactant) at 28 ± 2 °C. The addition of nitrogen and phosphorus sources separately i.e. 0.1% (v/v) of CO (NH₂)₂ or K₂HPO₄ enhanced the hydrocarbon utilization percentage. The pathways of microbial degradation of hydrocarbons were confirmed by FTIR, GC-MS, ¹H and ¹³C NMR spectroscopy analyses. These results demonstrated a novel approach using hydrocarbonoclastic self-immobilized deep sea bacterial consortium for eco-friendly bioremediation.

New nano-biomaterials for the removal of malachite green from aqueous solution via a response surface methodology

The development of new biomaterials for the remove of organic contaminants from wastewater has attracted much attention over the few past years. One of the most cost-effective approaches is to produce new high value biomaterials from low value solid agricultural biowastes. In this work, sugarcane bagasse and agricultural waste rich in reducing sugars, acted as both a green bioreductant for graphene oxide (GO) and a sustainable supporter for the immobilization of Burkholderia cepacia. Therefore, this new biomaterial which contained both reduced graphene oxide (RGO) and Burkholderia cepacia, was cable of initial adsorption of malachite green (MG) and its subsequent biodegradation. After 60 h, immobilized Burkholderia cepacia degraded more MG (98.5%) than a cell cultured Burkholderia cepacia (87.7%) alone. Raman spectroscopy confirmed that GO was successfully reduced by bagasse and that consequently a composite (B-RGO) was prepared. SEM indicated that Burkholderia cepacia was well immobilized and kinetics studies showed that the adsorption of MG onto the developed composite fitted a pseudo-second order kinetics model (R² > 0.99). Biodegradation of MG, was confirmed by the detection of appropriate degradation products such as N, N-dimethylaniline and 4-(Dimethylamino) benzophenone using GC-MS, UV and FT-IR, and via best fit first-order biodegration kinetics. Furthermore, a response surface methodology (RSM) was applied to the removal process by varying four independent parameters using a Box-Behnken design (BBD). Optimum MG removal (99.3%) was achieved at 31.5 °C, with an initial MG concentration of 114.5 mg L^-1, initial pH of 5.85, and an adsorbent dosage of 0.11 g L ^-1. The excellent removal efficiency indicated that agricultural waste derived reduced graphene oxide bio-adsorbents have significant potential for the removal of dyes such as MG from industrial wastewaters.

Efficient degradation of chlorimuron-ethyl by a bacterial consortium and shifts in the aboriginal microorganism community during the bioremediation of contaminated-soil

Excessive application of chlorimuron-ethyl has led to soil contamination and limited crop rotation; therefore, tactics to decrease and eliminate residual chlorimuron-ethyl in the environment have attracted increasing attention. In this study, two chlorimuron-ethyl-degrading bacterial strains (Rhodococcus sp. D310-1; Enterobacter sp. D310-5) were used to ferment and prepare a chlorimuron-ethyl-degrading bacterial consortium. To improve the degradation efficiency of the bacterial consortium, the cultivation conditions were optimized using response surface methodology (RSM). The maximum biodegradation rate (87.42%) was obtained under optimal conditions (carbon concentration, 9.21gL^-1; temperature, 26.15°C; pH, 6.95). The rate of chlorimuron-ethyl degradation by the bacterial consortium in the chlorimuron-ethyl-contaminated soil was monitored and reached 80.02% at the end of a 60-d incubation period. Illumina MiSeq sequencing results showed that microbial diversity was high, and 33 phyla were identified in the analyzed samples. Proteobacteria, Acidobacteria, Acidobacteria, Firmicutes and Bacteroidetes were present in relatively high abundances in the samples. The bacterial consortium made a positive impact on the remediation of chlorimuron-ethyl-contaminated soil and somewhat altered the composition of the bacterial community in the chlorimuron-ethyl-contaminated soil. These findings provide highly valuable information on the production of bacterial consortium for the remediation of chlorimuron-ethyl and other sulfonylurea-herbicide-contaminated soil.

Pyrene biodegradation with layer-by-layer assembly bio-microcapsules

Biotechnology is considered as a promising technology for the removal of polycyclic aromatic hydrocarbons from the environment. Free bacteria are often sensitive to some biotic and abiotic factors in the environment to the extent that their ability to effect biodegradation of organic pollutants, such as polycyclic aromatic hydrocarbons, is hampered. Consequently, it is imperative to carry out investigations into biological systems that will obviate or aid tolerance of bacteria to harsh environmental conditions. Chitosan/alginate bio-microcapsules produced using layer-by-layer (LBL) assembly method were tested for pyrene (PYR) biodegradation under harsh environmental conditions. Morphology observation indicated that the flake bio-microcapsules could be successfully prepared through LBL assembly method. Surface analysis showed that the bio-microcapsules had large fractions of mesopores. The results of the biodegradation experiments revealed that the 95% of 10mgL^-1 PYR could be removed by the bacteria encapsulated chitosan/alginate bio-microcapsules in 3 days, which was higher than that of the free bacteria (59%). Compared to the free cells, the bacteria encapsulated chitosan/alginate bio-microcapsules produced 1-6 times higher PYR biodegradation rates at a high initial PYR concentration (50mgL^-1) and extremely low pH values (pH =3) or temperatures (10°C or 40°C), as well as high salt stress. The results indicated that bacteria in microcapsules treatment gained a much higher tolerance to environmental stress and LBL bio-microcapsule could be promising candidate for remediating the organic pollutants.

Breaking down polystyrene through the application of a two-step thermal degradation and bacterial method to produce usable byproducts

In this work, the objective is to examine a novel approach on the biodegradability of polystyrene is examined. A two-step method for the degradation of polystyrene to chemically useful products has been devised. Initially, polystyrene is liquefied via a thermal degradation procedure predominantly into styrene monomers at low temperatures and left to cool down. Application of microorganisms in a second step targets the breaking of the polymer into smaller organic molecules. Microorganisms tested were Rhodococcus zopfii stoecker, Enterococcus faecalis, Pseudomonas putida and Salmonella with the last two being the most effective. A third step is required to treat the organic products accordingly. The suggested method exhibits total conversion of polystyrene. While the method has only been examined on a small scale, its potential advantages for the recycling of polystyrene waste, are minimized energy costs due to low temperatures of thermal treatment used and the extremely fast degradation kinetics observed.

Biodegradation of aliphatic and aromatic hydrocarbons using the filamentous fungus Penicillium sp. CHY-2 and characterization of its manganese peroxidase activity

A novel fungal strain, Penicillium sp. CHY-2, isolated from Antarctic soils, was effective for the degradation of decane at lower (20 °C) and medium (30 °C) temperatures.

Enrichment and immobilization of sulfide removal microbiota applied for environmental biological remediation of aquaculture area

To remove sulfide in the deteriorating aquaculture sediment and water, sulfide-oxidizing microbiota was enriched from Jiaozhou Bay, China, by using sulfide-rich medium. Composition and structure of microbial communities in the enrichments were investigated by 16S rDNA molecular biotechniques. Results showed that microbial community structure continuously shifted and the abundance of sulfate reducing bacteria, i.e., Desulfobacterium, Desulfococcus and Desulfobacca apparently declined. Several halophile genera, Vibrio, Marinobacter, Pseudomonas, Prochlorococcus, Pediococcus and Thiobacillus predominated finally in the microbiota. The enriched microbiota was capable of removing a maximum of 1000 mg/L sulfide within 12 h with 10% inoculum at pH 7.0, 20-30 °C. After immobilized, the microbiota presented excellent resistance to impact and could completely remove 600 mg/L sulfide in 12 h. Moreover, the immobilized microbiota recovered well even recycled for five times. In conclusion, the immobilized sulfide-removing microbiota showed a quite promising application for biological restoring of sulfide-rich aquaculture environment.

Response and resilience of soil microbial communities inhabiting in edible oil stress/contamination from industrial estates

Background

Gauging the microbial community structures and functions become imperative to understand the ecological processes. To understand the impact of long-term oil contamination on microbial community structure soil samples were taken from oil fields located in different industrial regions across Kadi, near Ahmedabad, India. Soil collected was hence used for metagenomic DNA extraction to study the capabilities of intrinsic microbial community in tolerating the oil perturbation.

Results

Taxonomic profiling was carried out by two different complementary approaches i.e. 16S rDNA and lowest common ancestor. The community profiling revealed the enrichment of phylum “Proteobacteria” and genus “Chromobacterium,” respectively for polluted soil sample. Our results indicated that soil microbial diversity (Shannon diversity index) decreased significantly with contamination. Further, assignment of obtained metagenome reads to Clusters of Orthologous Groups (COG) of protein and Kyoto Encyclopedia of Genes and Genomes (KEGG) hits revealed metabolic potential of indigenous microbial community. Enzymes were mapped on fatty acid biosynthesis pathway to elucidate their roles in possible catalytic reactions.

Conclusion

To the best of our knowledge this is first study for influence of edible oil on soil microbial communities via shotgun sequencing. The results indicated that long-term oil contamination significantly affects soil microbial community structure by acting as an environmental filter to decrease the regional differences distinguishing soil microbial communities.

Electronic supplementary material

The online version of this article (doi:10.1186/s12866-016-0669-8) contains supplementary material, which is available to authorized users.

Biodegradation of different petroleum hydrocarbons by free and immobilized microbial consortia

The efficiencies of free and immobilized microbial consortia in the degradation of different types of petroleum hydrocarbons were investigated. In this study, the biodegradation rates of naphthalene, phenanthrene, pyrene and crude oil reached about 80%, 30%, 56% and 48% under the optimum environmental conditions of free microbial consortia after 7 d. We evaluated five unique co-metabolic substances with petroleum hydrocarbons, α-lactose was the best co-metabolic substance among glucose, α-lactose, soluble starch, yeast powder and urea. The orthogonal biodegradation analysis results showed that semi-coke was the best immobilized carrier followed by walnut shell and activated carbon. Meanwhile, the significance of various factors that contribute to the biodegradation of semi-coke immobilized microbial consortia followed the order of: α-lactose > semi-coke > sodium alginate > CaCl2. Moreover, the degradation rate of the immobilized microbial consortium (47%) was higher than that of a free microbial consortium (26%) under environmental conditions such as the crude oil concentration of 3 g L(-1), NaCl concentration of 20 g L(-1), pH at 7.2-7.4 and temperature of 25 °C after 5 d. SEM and FTIR analyses revealed that the structure of semi-coke became more porous and easily adhered to the microbial consortium; the functional groups (e.g., hydroxy and phosphate) were identified in the microbial consortium and were changed by immobilization. This study demonstrated that the ability of microbial adaptation to the environment can be improved by immobilization which expands the application fields of microbial remediation.

Isolation and characterization of a novel hydrocarbon-degrading bacterium Achromobacter sp. HZ01 from the crude oil-contaminated seawater at the Daya Bay, southern China

Microorganisms play an important role in the biodegradation of petroleum contaminants, which have attracted great concern due to their persistent toxicity and difficult biodegradation. In this paper, a novel hydrocarbon-degrading bacterium HZ01 was isolated from the crude oil-contaminated seawater at the Daya Bay, South China Sea, and identified as Achromobacter sp. Under the conditions of pH 7.0, NaCl 3% (w/v), temperature 28 °C and rotary speed 150 rpm, its degradability of the total n-alkanes reached up to 96.6% after 10 days of incubation for the evaporated diesel oil. Furthermore, Achromobacter sp. HZ01 could effectively utilize polycyclic aromatic hydrocarbons (PAHs) as its sole carbon source, and could remove anthracene, phenanthrene and pyrence about 29.8%, 50.6% and 38.4% respectively after 30 days of incubation. Therefore, Achromobacter sp. HZ01 may employed as an excellent degrader to develop one cost-effective and eco-friendly method for the bioremediation of marine environments polluted by crude oil.

Isolation and characterization of broad spectrum coaggregating bacteria from different water systems for potential use in bioaugmentation

The bridging bacteria with broad-spectrum coaggregation ability play an important role during multispecies-biofilm development. In this study, through a visual and semi-quantitative assay, twenty-two bacterial strains with aggregation ability were obtained from 8 different water environments, and these strains were assigned to 7 genera according to their 16S rDNA and they were Aeromonas, Bacillus, Comamonas, Exiguobacterium, Pseudomonas, Shewanella and Comamonas. Furthermore, all possible 231 pairwise combinations among these 22 strains were explored for coaggregation ability by spectrophotometric assay. Among all these strains, it was found that Bacillus cereus G5 and Bacillus megaterium T1 coaggregated with themajority of assayed other strains, 90.5% (19 of 21 strains) and 76.2% respectively (17 of 21 strains) at a higher coaggregation rates (A.I. greater than 50%), indicating they have a broad-spectrum coaggregation property. The images of coaggregates also confirmed the coexistence of G5 and T1 with their partner strains. Biofilm biomass development of G5 cocultured with each of its partner strains were further evaluateded. The results showed that 15 of 21 strains, when paired with G5, developed greater biofilm biomass than the monocultures. Furthermore, the images from both fluorescence microscopy and scanning electron microscopy (SEM) demonstrated that G5 and A3-GFP (a 3,5-dinitrobenzoic acid-degrading strain, staining with gfp),could develop a typical spatial structure of dual-species biofilm when cocultured. These results suggested that bridging-bacteria with a broad spectrum coaggregating ability, such as G5,could mediate the integration of exogenous degrading bacteria into biofilms and contribute to the bioaugmentation treatment.

Preparation of petroleum-degrading bacterial agent and its application in remediation of contaminated soil in Shengli Oil Field, China

Two petroleum-degrading strains were screened from oil fields and denoted as SWH-1 (Bacillus subtilis) and SWH-2 (Sphingobacterium multivorum), which were used to ferment and prepare bacterial agent to remediate petroleum-contaminated sites in Shengli Oil Field in China. The optimal liquid fermentation medium and conditions were MgSO₄·7H₂O (0.5%), NaCl (0.5%), soybean dregs (3%), pH 7.0, culturing at 30 °C, and 220 r/min for 16 h. Peat was chosen as the bacterial carrier due to its ability of keeping microbial activity. Mixed fermented liquid was added into peat (1:2) and air-dried, and the bacterial agent was obtained. It was applied to the petroleum-contaminated soil, which was irrigated, tilled, and fertilized. The removal rate reached 67.7% after 2 months of remediation. During remediation, the quantity of indigenous bacteria varied a lot, while the inoculated bacteria remained stable; the dehydrogenase activity was at high levels and then decreased. Indigenous microorganisms, inoculated bacterial agent, nutrients, water, and soil permeability all played important roles. The study prepared an environment-friendly bacterial agent and established a set of bioremediation technique, which provided further insights into integration of fermentation engineering and soil remediation engineering.