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For: Da Q, Huang X, Li Z, Zuo Y, Zhang C, Liu J, Chen W, Li J, Xu D, Hu Z, Yi H, Guo Y, Wang Z, Chen L, Zhang L, He X, Zhang X, Mei K, Zhu C, Lu W, Shen L, Shi J, Li J, S S, Krishnamurthi G, Yang J, Lin T, Song Q, Liu X, Graham S, Bashir RMS, Yang C, Qin S, Tian X, Yin B, Zhao J, Metaxas DN, Li H, Wang C, Zhang S. DigestPath: A benchmark dataset with challenge review for the pathological detection and segmentation of digestive-system. Med Image Anal 2022;80:102485. [DOI: 10.1016/j.media.2022.102485] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2021] [Revised: 04/08/2022] [Accepted: 05/20/2022] [Indexed: 12/19/2022]
Number Cited by Other Article(s)
1
Kang H, Kim M, Ko YS, Cho Y, Yi MY. WISE: Efficient WSI selection for active learning in histopathology. Comput Med Imaging Graph 2024;118:102455. [PMID: 39481146 DOI: 10.1016/j.compmedimag.2024.102455] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2024] [Revised: 10/06/2024] [Accepted: 10/18/2024] [Indexed: 11/02/2024]
2
Nunes JD, Montezuma D, Oliveira D, Pereira T, Cardoso JS. A survey on cell nuclei instance segmentation and classification: Leveraging context and attention. Med Image Anal 2024;99:103360. [PMID: 39383642 DOI: 10.1016/j.media.2024.103360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Revised: 08/26/2024] [Accepted: 09/27/2024] [Indexed: 10/11/2024]
3
Pan N, Mi X, Li H, Ge X, Sui X, Jiang Y. WSSS-CRAM: precise segmentation of histopathological images via class region activation mapping. Front Microbiol 2024;15:1483052. [PMID: 39421560 PMCID: PMC11484024 DOI: 10.3389/fmicb.2024.1483052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2024] [Accepted: 09/18/2024] [Indexed: 10/19/2024]  Open
4
Boulogne LH, Lorenz J, Kienzle D, Schön R, Ludwig K, Lienhart R, Jégou S, Li G, Chen C, Wang Q, Shi D, Maniparambil M, Müller D, Mertes S, Schröter N, Hellmann F, Elia M, Dirks I, Bossa MN, Berenguer AD, Mukherjee T, Vandemeulebroucke J, Sahli H, Deligiannis N, Gonidakis P, Huynh ND, Razzak I, Bouadjenek R, Verdicchio M, Borrelli P, Aiello M, Meakin JA, Lemm A, Russ C, Ionasec R, Paragios N, van Ginneken B, Revel MP. The STOIC2021 COVID-19 AI challenge: Applying reusable training methodologies to private data. Med Image Anal 2024;97:103230. [PMID: 38875741 DOI: 10.1016/j.media.2024.103230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Revised: 01/11/2024] [Accepted: 06/03/2024] [Indexed: 06/16/2024]
5
Fiorin A, López Pablo C, Lejeune M, Hamza Siraj A, Della Mea V. Enhancing AI Research for Breast Cancer: A Comprehensive Review of Tumor-Infiltrating Lymphocyte Datasets. JOURNAL OF IMAGING INFORMATICS IN MEDICINE 2024:10.1007/s10278-024-01043-8. [PMID: 38806950 DOI: 10.1007/s10278-024-01043-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Revised: 01/19/2024] [Accepted: 02/07/2024] [Indexed: 05/30/2024]
6
Yan F, Da Q, Yi H, Deng S, Zhu L, Zhou M, Liu Y, Feng M, Wang J, Wang X, Zhang Y, Zhang W, Zhang X, Lin J, Zhang S, Wang C. Artificial intelligence-based assessment of PD-L1 expression in diffuse large B cell lymphoma. NPJ Precis Oncol 2024;8:76. [PMID: 38538739 PMCID: PMC10973523 DOI: 10.1038/s41698-024-00577-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Accepted: 03/13/2024] [Indexed: 11/12/2024]  Open
7
Luna M, Chikontwe P, Park SH. Enhanced Nuclei Segmentation and Classification via Category Descriptors in the SAM Model. Bioengineering (Basel) 2024;11:294. [PMID: 38534568 DOI: 10.3390/bioengineering11030294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Revised: 03/13/2024] [Accepted: 03/19/2024] [Indexed: 03/28/2024]  Open
8
Mahbod A, Polak C, Feldmann K, Khan R, Gelles K, Dorffner G, Woitek R, Hatamikia S, Ellinger I. NuInsSeg: A fully annotated dataset for nuclei instance segmentation in H&E-stained histological images. Sci Data 2024;11:295. [PMID: 38486039 PMCID: PMC10940572 DOI: 10.1038/s41597-024-03117-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Accepted: 03/04/2024] [Indexed: 03/18/2024]  Open
9
Lu MY, Chen B, Williamson DFK, Chen RJ, Liang I, Ding T, Jaume G, Odintsov I, Le LP, Gerber G, Parwani AV, Zhang A, Mahmood F. A visual-language foundation model for computational pathology. Nat Med 2024;30:863-874. [PMID: 38504017 PMCID: PMC11384335 DOI: 10.1038/s41591-024-02856-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 02/05/2024] [Indexed: 03/21/2024]
10
Chelebian E, Avenel C, Ciompi F, Wählby C. DEPICTER: Deep representation clustering for histology annotation. Comput Biol Med 2024;170:108026. [PMID: 38308865 DOI: 10.1016/j.compbiomed.2024.108026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Revised: 01/24/2024] [Accepted: 01/24/2024] [Indexed: 02/05/2024]
11
Graham S, Vu QD, Jahanifar M, Weigert M, Schmidt U, Zhang W, Zhang J, Yang S, Xiang J, Wang X, Rumberger JL, Baumann E, Hirsch P, Liu L, Hong C, Aviles-Rivero AI, Jain A, Ahn H, Hong Y, Azzuni H, Xu M, Yaqub M, Blache MC, Piégu B, Vernay B, Scherr T, Böhland M, Löffler K, Li J, Ying W, Wang C, Snead D, Raza SEA, Minhas F, Rajpoot NM. CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting. Med Image Anal 2024;92:103047. [PMID: 38157647 DOI: 10.1016/j.media.2023.103047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Revised: 09/19/2023] [Accepted: 11/29/2023] [Indexed: 01/03/2024]
12
Bashir RMS, Qaiser T, Raza SEA, Rajpoot NM. Consistency regularisation in varying contexts and feature perturbations for semi-supervised semantic segmentation of histology images. Med Image Anal 2024;91:102997. [PMID: 37866169 DOI: 10.1016/j.media.2023.102997] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Revised: 10/05/2023] [Accepted: 10/06/2023] [Indexed: 10/24/2023]
13
Zhang S, Metaxas D. On the challenges and perspectives of foundation models for medical image analysis. Med Image Anal 2024;91:102996. [PMID: 37857067 DOI: 10.1016/j.media.2023.102996] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Revised: 09/24/2023] [Accepted: 10/04/2023] [Indexed: 10/21/2023]
14
Zhao T, Fu C, Song W, Sham CW. RGGC-UNet: Accurate Deep Learning Framework for Signet Ring Cell Semantic Segmentation in Pathological Images. Bioengineering (Basel) 2023;11:16. [PMID: 38247893 PMCID: PMC10813712 DOI: 10.3390/bioengineering11010016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Revised: 12/20/2023] [Accepted: 12/22/2023] [Indexed: 01/23/2024]  Open
15
Wang D, Wang X, Wang L, Li M, Da Q, Liu X, Gao X, Shen J, He J, Shen T, Duan Q, Zhao J, Li K, Qiao Y, Zhang S. A Real-world Dataset and Benchmark For Foundation Model Adaptation in Medical Image Classification. Sci Data 2023;10:574. [PMID: 37660106 PMCID: PMC10475041 DOI: 10.1038/s41597-023-02460-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Accepted: 08/09/2023] [Indexed: 09/04/2023]  Open
16
Huang Z, Bianchi F, Yuksekgonul M, Montine TJ, Zou J. A visual-language foundation model for pathology image analysis using medical Twitter. Nat Med 2023;29:2307-2316. [PMID: 37592105 DOI: 10.1038/s41591-023-02504-3] [Citation(s) in RCA: 23] [Impact Index Per Article: 23.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2023] [Accepted: 07/18/2023] [Indexed: 08/19/2023]
17
Zheng Y, Li J, Shi J, Xie F, Huai J, Cao M, Jiang Z. Kernel Attention Transformer for Histopathology Whole Slide Image Analysis and Assistant Cancer Diagnosis. IEEE TRANSACTIONS ON MEDICAL IMAGING 2023;42:2726-2739. [PMID: 37018112 DOI: 10.1109/tmi.2023.3264781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
18
Zhao T, Fu C, Tie M, Sham CW, Ma H. RGSB-UNet: Hybrid Deep Learning Framework for Tumour Segmentation in Digital Pathology Images. Bioengineering (Basel) 2023;10:957. [PMID: 37627842 PMCID: PMC10452008 DOI: 10.3390/bioengineering10080957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 08/06/2023] [Accepted: 08/09/2023] [Indexed: 08/27/2023]  Open
19
Wu Y, Li Y, Xiong X, Liu X, Lin B, Xu B. Recent advances of pathomics in colorectal cancer diagnosis and prognosis. Front Oncol 2023;13:1094869. [PMID: 37538112 PMCID: PMC10396402 DOI: 10.3389/fonc.2023.1094869] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Accepted: 06/13/2023] [Indexed: 08/05/2023]  Open
20
A scale and region-enhanced decoding network for nuclei classification in histology image. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2023.104626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
21
Wang Y, Xia W, Yan Z, Zhao L, Bian X, Liu C, Qi Z, Zhang S, Tang Z. Root canal treatment planning by automatic tooth and root canal segmentation in dental CBCT with deep multi-task feature learning. Med Image Anal 2023;85:102750. [PMID: 36682153 DOI: 10.1016/j.media.2023.102750] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Revised: 10/16/2022] [Accepted: 01/10/2023] [Indexed: 01/21/2023]
22
Tourniaire P, Ilie M, Hofman P, Ayache N, Delingette H. MS-CLAM: Mixed supervision for the classification and localization of tumors in Whole Slide Images. Med Image Anal 2023;85:102763. [PMID: 36764037 DOI: 10.1016/j.media.2023.102763] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 01/30/2023] [Accepted: 01/31/2023] [Indexed: 02/08/2023]
23
Graham S, Vu QD, Jahanifar M, Raza SEA, Minhas F, Snead D, Rajpoot N. One model is all you need: Multi-task learning enables simultaneous histology image segmentation and classification. Med Image Anal 2023;83:102685. [PMID: 36410209 DOI: 10.1016/j.media.2022.102685] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Revised: 10/20/2022] [Accepted: 11/03/2022] [Indexed: 11/13/2022]
24
Kim I, Kang K, Song Y, Kim TJ. Application of Artificial Intelligence in Pathology: Trends and Challenges. Diagnostics (Basel) 2022;12:2794. [PMID: 36428854 PMCID: PMC9688959 DOI: 10.3390/diagnostics12112794] [Citation(s) in RCA: 28] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Revised: 11/03/2022] [Accepted: 11/11/2022] [Indexed: 11/16/2022]  Open
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