Application of breast cancer diagnosis based on a combination of convolutional neural networks, ridge regression and linear discriminant analysis using invasive breast cancer images processed with autoencoders

Real-time brain tumour diagnoses using a novel lightweight deep learning model

Brain tumours continue to be a primary cause of worldwide death, highlighting the critical need for effective and accurate diagnostic tools. This article presents MK-YOLOv8, an innovative lightweight deep learning framework developed for the real-time detection and categorization of brain tumours from MRI images. Based on the YOLOv8 architecture, the proposed model incorporates Ghost Convolution, the C3Ghost module, and the SPPELAN module to improve feature extraction and substantially decrease computational complexity. An x-small object detection layer has been added, supporting precise detection of small and x-small tumours, which is crucial for early diagnosis. Trained on the Figshare Brain Tumour (FBT) dataset comprising (3,064) MRI images, MK-YOLOv8 achieved a mean Average Precision (mAP) of 99.1% at IoU (0.50) and 88.4% at IoU (0.50-0.95), outperforming YOLOv8 (98% and 78.8%, respectively). Glioma recall improved by 26%, underscoring the enhanced sensitivity to challenging tumour types. With a computational footprint of only 96.9 GFLOPs (representing 37.5% of YOYOLOv8x'sFLOPs) and utilizing 12.6 million parameters, a mere 18.5% of YOYOLOv8's parameters, MK-YOLOv8 delivers high efficiency with reduced resource demands. Also, it trained on the Br35H dataset (801 images) to guarantee the model's robustness and generalization; it achieved a mAP of 98.6% at IoU (0.50). The suggested model operates at 62 frames per second (FPS) and is suited for real-time clinical processes. These developments establish MK-YOLOv8 as an innovative framework, overcoming challenges in tiny tumour identification and providing a generalizable, adaptable, and precise detection approach for brain tumour diagnostics in clinical settings.

Detection of Aspergilloma Disease Using Feature-Selection-Based Vision Transformers

Background: Aspergilloma disease is a fungal mass found in organs such as the sinuses and lungs, caused by the fungus Aspergillus. This disease occurs due to the accumulation of mucus, inflamed cells, and altered blood elements. Various surgical methods are used in clinical settings for the treatment of aspergilloma disease. Expert opinion is crucial for the diagnosis of the disease. Recent advancements in next-generation technologies have made them crucial for disease detection. Deep-learning models, which benefit from continuous technological advancements, are already integrated into current early diagnosis systems. Methods: This study is distinguished by the use of vision transformers (ViTs) rather than traditional deep-learning models. The data used in this study were obtained from patients treated at the Department of Thoracic Surgery at Fırat University. The dataset consists of two class types: aspergilloma disease images and non-aspergilloma disease images. The proposed approach consists of pre-processing, model training, feature extraction, efficient feature selection, feature fusion, and classification processes. In the pre-processing step, unnecessary regions of the images were cropped and data augmentation techniques were applied for model training. Three types of ViT models (vit_base_patch16, vit_large_patch16, and vit_base_resnet50) were used for model training. The feature sets obtained from training the models were merged, and the combined feature set was processed using feature selection methods (Chi2, mRMR, and Relief). Efficient features selected by these methods (Chi2 and mRMR, Chi2 and Relief, and mRMR and Relief) were combined in certain proportions to obtain more effective feature sets. Machine-learning methods were used in the classification process. Results: The most successful result in the detection of aspergilloma disease was achieved using Support Vector Machines (SVMs). The SVM method achieved a 99.70% overall accuracy with the cross-validation technique in classification. Conclusions: These results highlight the benefits of the suggested method for identifying aspergilloma.

Ultrasonic Weld Quality Inspection Involving Strength Prediction and Defect Detection in Data-Constrained Training Environments

Welding is an extensively used technique in manufacturing, and as for every other process, there is the potential for defects in the weld joint that could be catastrophic to the manufactured products. Different welding processes use different parameter settings, which greatly impact the quality of the final welded products. The focus of research in weld defect detection is to develop a non-destructive testing method for weld quality assessment based on observing the weld with an RGB camera. Deep learning techniques have been widely used in the domain of weld defect detection in recent times, but the majority of them use, for example, X-ray images. An RGB image-based solution is attractive, as RGB cameras are comparatively inexpensive compared to X-ray image solutions. However, the number of publicly available RGB image datasets for weld defect detection is comparatively lower than that of X-ray image datasets. This work achieves a complete weld quality assessment involving lap shear strength prediction and visual weld defect detection from an extremely limited dataset. First, a multimodal dataset is generated by the fusion of image data features extracted using a convolutional autoencoder (CAE) designed in this experiment and input parameter settings data. The fusion of the dataset reduced lap shear strength (LSS) prediction errors by 34% compared to prediction errors using only input parameter settings data. This is a promising result, considering the extremely small dataset size. This work also achieves visual weld defect detection on the same limited dataset with the help of an ultrasonic weld defect dataset generated using offline and online data augmentation. The weld defect detection achieves an accuracy of 74%, again a promising result that meets standard requirements. The combination of lap shear strength prediction and visual defect detection leads to a complete inspection to avoid premature failure of the ultrasonic weld joints. The weld defect detection was compared against the publicly available image dataset for surface defect detection.

Auto-BCS: A Hybrid System for Real-Time Breast Cancer Screening from Pathological Images

Breast cancer is recognized as a prominent cause of cancer-related mortality among women globally, emphasizing the critical need for early diagnosis resulting improvement in survival rates. Current breast cancer diagnostic procedures depend on manual assessments of pathological images by medical professionals. However, in remote or underserved regions, the scarcity of expert healthcare resources often compromised the diagnostic accuracy. Machine learning holds great promise for early detection, yet existing breast cancer screening algorithms are frequently characterized by significant computational demands, rendering them unsuitable for deployment on low-processing-power mobile devices. In this paper, a real-time automated system "Auto-BCS" is introduced that significantly enhances the efficiency of early breast cancer screening. The system is structured into three distinct phases. In the initial phase, images undergo a pre-processing stage aimed at noise reduction. Subsequently, feature extraction is carried out using a lightweight and optimized deep learning model followed by extreme gradient boosting classifier, strategically employed to optimize the overall performance and prevent overfitting in the deep learning model. The system's performance is gauged through essential metrics, including accuracy, precision, recall, F1 score, and inference time. Comparative evaluations against state-of-the-art algorithms affirm that Auto-BCS outperforms existing models, excelling in both efficiency and processing speed. Computational efficiency is prioritized by Auto-BCS, making it particularly adaptable to low-processing-power mobile devices. Comparative assessments confirm the superior performance of Auto-BCS, signifying its potential to advance breast cancer screening technology.

A systematic review on deep learning-based automated cancer diagnosis models

Deep learning is gaining importance due to its wide range of applications. Many researchers have utilized deep learning (DL) models for the automated diagnosis of cancer patients. This paper provides a systematic review of DL models for automated diagnosis of cancer patients. Initially, various DL models for cancer diagnosis are presented. Five major categories of cancers such as breast, lung, liver, brain and cervical cancer are considered. As these categories of cancers have a very high percentage of occurrences with high mortality rate. The comparative analysis of different types of DL models is drawn for the diagnosis of cancer at early stages by considering the latest research articles from 2016 to 2022. After comprehensive comparative analysis, it is found that most of the researchers achieved appreciable accuracy with implementation of the convolutional neural network model. These utilized the pretrained models for automated diagnosis of cancer patients. Various shortcomings with the existing DL-based automated cancer diagnosis models are also been presented. Finally, future directions are discussed to facilitate further research for automated diagnosis of cancer patients.

ML-DSTnet: A Novel Hybrid Model for Breast Cancer Diagnosis Improvement Based on Image Processing Using Machine Learning and Dempster-Shafer Theory

Medical intelligence detection systems have changed with the help of artificial intelligence and have also faced challenges. Breast cancer diagnosis and classification are part of this medical intelligence system. Early detection can lead to an increase in treatment options. On the other hand, uncertainty is a case that has always been with the decision-maker. The system's parameters cannot be accurately estimated, and the wrong decision is made. To solve this problem, we have proposed a method in this article that reduces the ignorance of the problem with the help of Dempster-Shafer theory so that we can make a better decision. This research on the MIAS dataset, based on image processing machine learning and Dempster-Shafer mathematical theory, tries to improve the diagnosis and classification of benign, malignant masses. We first determine the results of the diagnosis of mass type with MLP by using the texture feature and CNN. We combine the results of the two classifications with Dempster-Shafer theory and improve its accuracy. The obtained results show that the proposed approach has better performance than others based on evaluation criteria such as accuracy of 99.10%, sensitivity of 98.4%, and specificity of 100%.

A transfer learning‐based system for grading breast invasive ductal carcinoma

Breast carcinoma is a sort of malignancy that begins in the breast. Breast malignancy cells generally structure a tumour that can routinely be seen on an x‐ray or felt like a lump. Despite advances in screening, treatment, and observation that have improved patient endurance rates, breast carcinoma is the most regularly analyzed malignant growth and the subsequent driving reason for malignancy mortality among ladies. Invasive ductal carcinoma is the most boundless breast malignant growth with about 80% of all analyzed cases. It has been found from numerous types of research that artificial intelligence has tremendous capabilities, which is why it is used in various sectors, especially in the healthcare domain. In the initial phase of the medical field, mammography is used for diagnosis, and finding cancer in the case of a dense breast is challenging. The evolution of deep learning and applying the same in the findings are helpful for earlier tracking and medication. The authors have tried to utilize the deep learning concepts for grading breast invasive ductal carcinoma using Transfer Learning in the present work. The authors have used five transfer learning approaches here, namely VGG16, VGG19, InceptionReNetV2, DenseNet121, and DenseNet201 with 50 epochs in the Google Colab platform which has a single 12GB NVIDIA Tesla K80 graphical processing unit (GPU) support that can be used up to 12 h continuously. The dataset used for this work can be openly accessed from http://databiox.com. The experimental results that the authors have received regarding the algorithm's accuracy are as follows: VGG16 with 92.5%, VGG19 with 89.77%, InceptionReNetV2 with 84.46%, DenseNet121 with 92.64%, DenseNet201 with 85.22%. From the experimental results, it is clear that the DenseNet121 gives the maximum accuracy in terms of cancer grading, whereas the InceptionReNetV2 has minimal accuracy.

A new approach based on convolutional neural network and feature selection for recognizing vehicle types

The number of vehicles used in traffic life has reached enormous dimensions today. The increase in the number of vehicles day by day causes some traffic problems along with it; such as traffic congestion, accidents, pollution, and safety. To overcome all these problems, convolutional neural networks (CNN) methods are one of the trend methods used in recent years due to their success. In this study, a new approach is proposed to use this power of CNN in low-power devices. First of all, MobileNetv1, MobileNetv2, and NASNetMobile models were optimized to increase accuracy performance. Then, an approach is proposed in which these optimized mobile CNN approaches are used only as feature extractors, and methods such as combining, selecting, and classifying the obtained features are used together. As a result of the classification made with this approach, the classification accuracy has increased by approximately 5%.

Diagnostic Strategies for Breast Cancer Detection: From Image Generation to Classification Strategies Using Artificial Intelligence Algorithms

Breast cancer is one the main death causes for women worldwide, as 16% of the diagnosed malignant lesions worldwide are its consequence. In this sense, it is of paramount importance to diagnose these lesions in the earliest stage possible, in order to have the highest chances of survival. While there are several works that present selected topics in this area, none of them present a complete panorama, that is, from the image generation to its interpretation. This work presents a comprehensive state-of-the-art review of the image generation and processing techniques to detect Breast Cancer, where potential candidates for the image generation and processing are presented and discussed. Novel methodologies should consider the adroit integration of artificial intelligence-concepts and the categorical data to generate modern alternatives that can have the accuracy, precision and reliability expected to mitigate the misclassifications.

FWLICM-Deep Learning: Fuzzy Weighted Local Information C-Means Clustering-Based Lung Lobe Segmentation with Deep Learning for COVID-19 Detection

Coronavirus (COVID-19) creates an extensive range of respiratory contagions, and it is a kind of ribonucleic acid (RNA) virus, which affects both animals and humans. Moreover, COVID-19 is a new disease, which produces contamination in upper respiration alterritory and lungs. The new COVID is a rapidly spreading pathogen globally, and it threatens billions of humans' lives. However, it is significant to identify positive cases in order to avoid the spread of plague and to speedily treat infected patients. Hence, in this paper, the WSCA-based RMDL approach is devised for COVID-19 prediction by means of chest X-ray images. Moreover, Fuzzy Weighted Local Information C-Means (FWLICM) approach is devised in order to segment lung lobes. The developed FWLICM method is designed by modifying the Fuzzy Local Information C-Means (FLICM) technique. Additionally, random multimodel deep learning (RMDL) classifier is utilized for the COVID-19 prediction process. The new optimization approach, named water sine cosine algorithm (WSCA), is devised in order to obtain an effective prediction. The developed WSCA is newly designed by incorporating sine cosine algorithm (SCA) and water cycle algorithm (WCA). The developed WSCA-driven RMDL approach outperforms other COVID-19 prediction techniques with regard to accuracy, specificity, sensitivity, and dice score of 92.41%, 93.55%, 92.14%, and 90.02%.

Illumination invariant face recognition using contourlet transform and convolutional neural network

The face is a dominant biometric for recognizing a person. However, face recognition becomes challenging when there are severe changes in lighting conditions, i.e., illumination variations, which have been shown to have a more severe effect on recognition performance than the inherent differences between individuals. Most of the existing methods for tackling the problem of illumination variation assume that illumination lies in the large-scale component of a facial image; as such, the large-scale component is discarded, and features are extracted from small-scale components. Recently, it has been shown that large-scale component is also important; in addition, small-scale component contains detrimental noise features. Keeping this in view, we introduce a method for illumination invariant face recognition that exploits large-scale and small-scale components by discarding the illumination artifacts and detrimental noise using ContourletDS. After discarding the unwanted components, local and global features are extracted using a convolutional neural network (CNN) model; we examined three widely employed CNN models: VGG-16, GoogLeNet, and ResNet152. To reduce the dimensions of local and global features and fuse them, we employ linear discriminant analysis (LDA). Finally, ridge regression is used for recognition. The method was evaluated on three benchmark datasets; it achieved accuracies of 99.7%, 100%, and 79.76% on Extended Yale B, AR, and M-PIE, respectively. The comparison reveals that it outperforms the state-of-the-art methods.

Breast cancer diagnosis in an early stage using novel deep learning with hybrid optimization technique

Breast cancer is one of the primary causes of death that is occurred in females around the world. So, the recognition and categorization of initial phase breast cancer are necessary to help the patients to have suitable action. However, mammography images provide very low sensitivity and efficiency while detecting breast cancer. Moreover, Magnetic Resonance Imaging (MRI) provides high sensitivity than mammography for predicting breast cancer. In this research, a novel Back Propagation Boosting Recurrent Wienmed model (BPBRW) with Hybrid Krill Herd African Buffalo Optimization (HKH-ABO) mechanism is developed for detecting breast cancer in an earlier stage using breast MRI images. Initially, the MRI breast images are trained to the system, and an innovative Wienmed filter is established for preprocessing the MRI noisy image content. Moreover, the projected BPBRW with HKH-ABO mechanism categorizes the breast cancer tumor as benign and malignant. Additionally, this model is simulated using Python, and the performance of the current research work is evaluated with prevailing works. Hence, the comparative graph shows that the current research model produces improved accuracy of 99.6% with a 0.12% lower error rate.

A Comprehensive Survey on Deep-Learning-Based Breast Cancer Diagnosis

Breast cancer is now the most frequently diagnosed cancer in women, and its percentage is gradually increasing. Optimistically, there is a good chance of recovery from breast cancer if identified and treated at an early stage. Therefore, several researchers have established deep-learning-based automated methods for their efficiency and accuracy in predicting the growth of cancer cells utilizing medical imaging modalities. As of yet, few review studies on breast cancer diagnosis are available that summarize some existing studies. However, these studies were unable to address emerging architectures and modalities in breast cancer diagnosis. This review focuses on the evolving architectures of deep learning for breast cancer detection. In what follows, this survey presents existing deep-learning-based architectures, analyzes the strengths and limitations of the existing studies, examines the used datasets, and reviews image pre-processing techniques. Furthermore, a concrete review of diverse imaging modalities, performance metrics and results, challenges, and research directions for future researchers is presented.

Automated detection of colon cancer using genomic signal processing

Background

Disorders in deoxyribonucleic acid (DNA) mutations are the common cause of colon cancer. Detection of these mutations is the first step in colon cancer diagnosis. Differentiation among normal and cancerous colon gene sequences is a method used for mutation identification. Early detection of this type of disease can avoid complications that can lead to death. In this study, 55 healthy and 55 cancerous genes for colon cells obtained from the national center for biotechnology information GenBank are used. After applying the electron–ion interaction pseudopotential (EIIP) numbering representation method for the sequences, single-level discrete wavelet transform (DWT) is applied using Haar wavelet. Then, some statistical features are obtained from the wavelet domain. These features are mean, variance, standard deviation, autocorrelation, entropy, skewness, and kurtosis. The resulting values are applied to the k-nearest neighbor (KNN) and support vector machine (SVM) algorithms to obtain satisfactory classification results.

Results

Four important parameters are calculated to evaluate the performance of the classifiers. Accuracy (ACC), F1 score, and Matthews correlation coefficient (MCC) are 95%, 94.74%, and 0.9045%, respectively, for SVM and 97.5%, 97.44%, and 0.9512%, respectively, for KNN.

Conclusion

This study has created a novel successful system for colorectal cancer classification and detection with the well-satisfied results. The K-nearest network results are the best with low error for the generated classification system, even though the results of the SVM network are acceptable.

Recurrent Neural Network and Reinforcement Learning Model for COVID-19 Prediction

Detection and prediction of the novel Coronavirus present new challenges for the medical research community due to its widespread across the globe. Methods driven by Artificial Intelligence can help predict specific parameters, hazards, and outcomes of such a pandemic. Recently, deep learning-based approaches have proven a novel opportunity to determine various difficulties in prediction. In this work, two learning algorithms, namely deep learning and reinforcement learning, were developed to forecast COVID-19. This article constructs a model using Recurrent Neural Networks (RNN), particularly the Modified Long Short-Term Memory (MLSTM) model, to forecast the count of newly affected individuals, losses, and cures in the following few days. This study also suggests deep learning reinforcement to optimize COVID-19's predictive outcome based on symptoms. Real-world data was utilized to analyze the success of the suggested system. The findings show that the established approach promises prognosticating outcomes concerning the current COVID-19 pandemic and outperformed the Long Short-Term Memory (LSTM) model and the Machine Learning model, Logistic Regresion (LR) in terms of error rate.

Artificial Intelligence Algorithm-Based Ultrasound Image Segmentation Technology in the Diagnosis of Breast Cancer Axillary Lymph Node Metastasis

This paper aimed to investigate the application of ultrasound image segmentation technology based on the back propagation neural network (BPNN) artificial intelligence algorithm in the diagnosis of breast cancer axillary lymph node metastasis, thereby providing a theoretical basis for clinical diagnosis. In this study, 90 breast cancer patients with axillary lymph node metastasis were selected as the research objects and rolled randomly into an experimental group and a control group. Besides, all of them were examined by ultrasound. The BPNN algorithm for the ultrasound image segmentation diagnosis method was applied to the patiens from the experimental group, while the control group was given routine ultrasound diagnosis. Thus, the value of this algorithm in ultrasonic diagnosis was compared and explored. The results showed that when the number of hidden layer nodes based on the BPNN artificial intelligence algorithm was 2, 3, 4, 5, 6, 7, and 8, the corresponding segmentation accuracy was 97.3%, 96.5%, 94.8%, 94.8%, and 94.1% in turn. Among them, the segmentation accuracy was the highest when the number of hidden layer nodes was 2. The correlation of independent variable bubble plot analysis showed that the presence or absence of capsules, the presence of crab feet or burrs in breast cancer lesions was critical influencing factors for the occurrence of axillary lymph node metastasis, and the standardized importance was 99.7% and 70.8%, respectively. Besides, the area under the two-dimensional receiver operating characteristic (ROC) curve of the BPNN artificial intelligence algorithm model classification was always greater than the area under the curve of manual segmentation, and the segmentation accuracy was 90.31%, 94.88%, 95.48%, 95.44%, and 97.65% in sequence. In addition, the segmentation specificity of different running times was higher than that of manual segmentation. In conclusion, the BPNN artificial intelligence algorithm had high accuracy, sensitivity, and specificity for ultrasound image segmentation, with a better segmentation effect. Therefore, it had a better diagnostic effect for breast cancer axillary lymph node metastasis.

BCDnet: Parallel heterogeneous eight-class classification model of breast pathology

Breast cancer is the cancer with the highest incidence of malignant tumors in women, which seriously endangers women's health. With the help of computer vision technology, it has important application value to automatically classify pathological tissue images to assist doctors in rapid and accurate diagnosis. Breast pathological tissue images have complex and diverse characteristics, and the medical data set of breast pathological tissue images is small, which makes it difficult to automatically classify breast pathological tissues. In recent years, most of the researches have focused on the simple binary classification of benign and malignant, which cannot meet the actual needs for classification of pathological tissues. Therefore, based on deep convolutional neural network, model ensembleing, transfer learning, feature fusion technology, this paper designs an eight-class classification breast pathology diagnosis model BCDnet. A user inputs the patient's breast pathological tissue image, and the model can automatically determine what the disease is (Adenosis, Fibroadenoma, Tubular Adenoma, Phyllodes Tumor, Ductal Carcinoma, Lobular Carcinoma, Mucinous Carcinoma or Papillary Carcinoma). The model uses the VGG16 convolution base and Resnet50 convolution base as the parallel convolution base of the model. Two convolutional bases (VGG16 convolutional base and Resnet50 convolutional base) obtain breast tissue image features from different fields of view. After the information output by the fully connected layer of the two convolutional bases is fused, it is classified and output by the SoftMax function. The model experiment uses the publicly available BreaKHis data set. The number of samples of each class in the data set is extremely unevenly distributed. Compared with the binary classification, the number of samples in each class of the eight-class classification is also smaller. Therefore, the image segmentation method is used to expand the data set and the non-repeated random cropping method is used to balance the data set. Based on the balanced data set and the unbalanced data set, the BCDnet model, the pre-trained model Resnet50+ fine-tuning, and the pre-trained model VGG16+ fine-tuning are used for multiple comparison experiments. In the comparison experiment, the BCDnet model performed outstandingly, and the correct recognition rate of the eight-class classification model is higher than 98%. The results show that the model proposed in this paper and the method of improving the data set are reasonable and effective.

Classification of Homo sapiens gene behavior using linear discriminant analysis fused with minimum entropy mapping

Classification of Homo sapiens gene behavior employing computational biology is a recent research trend. But monitoring gene activity profile and genetic behavior from the alphabetic DNA sequence using a non-invasive method is a tremendous challenge in functional genomics. The present paper addresses such issue and attempts to differentiate Homo sapiens genes using linear discriminant analysis (LDA) method. Annotated protein coding sequences of Homo sapiens genes, collected from NCBI, are taken as test samples. Minimum entropy-based mapping (MEM) technique assists to extract highest information from the numerical DNA sequences. The proposed LDA technique has successfully classified Homo sapiens genes based on the following features: composition of hydrophilic amino acids, dominance of arginine amino acid, and magnitude and size of individual amino acids. The proposed algorithm is successfully tested on 84 Homo sapiens healthy and cancer genes of the prostate and breast cells. Classification performance of the proposed LDA technique is judged by sensitivity (89.12%), specificity (91.9%), accuracy (90.87%), F1 score (92.03%), Matthews' correlation coefficients (81.04%), and miss rate (9.12%), and it outperforms other four existing classifiers. The results are cross-validated through Rayleigh PDF and mutual information technique. Fisher test, 2-sample T-test, and relative entropy test are considered to verify the efficacy of the present classifier.

Transfer Learning to Detect COVID-19 Automatically from X-Ray Images Using Convolutional Neural Networks

The novel coronavirus disease 2019 (COVID-19) is a contagious disease that has caused thousands of deaths and infected millions worldwide. Thus, various technologies that allow for the fast detection of COVID-19 infections with high accuracy can offer healthcare professionals much-needed help. This study is aimed at evaluating the effectiveness of the state-of-the-art pretrained Convolutional Neural Networks (CNNs) on the automatic diagnosis of COVID-19 from chest X-rays (CXRs). The dataset used in the experiments consists of 1200 CXR images from individuals with COVID-19, 1345 CXR images from individuals with viral pneumonia, and 1341 CXR images from healthy individuals. In this paper, the effectiveness of artificial intelligence (AI) in the rapid and precise identification of COVID-19 from CXR images has been explored based on different pretrained deep learning algorithms and fine-tuned to maximise detection accuracy to identify the best algorithms. The results showed that deep learning with X-ray imaging is useful in collecting critical biological markers associated with COVID-19 infections. VGG16 and MobileNet obtained the highest accuracy of 98.28%. However, VGG16 outperformed all other models in COVID-19 detection with an accuracy, F1 score, precision, specificity, and sensitivity of 98.72%, 97.59%, 96.43%, 98.70%, and 98.78%, respectively. The outstanding performance of these pretrained models can significantly improve the speed and accuracy of COVID-19 diagnosis. However, a larger dataset of COVID-19 X-ray images is required for a more accurate and reliable identification of COVID-19 infections when using deep transfer learning. This would be extremely beneficial in this pandemic when the disease burden and the need for preventive measures are in conflict with the currently available resources.

A Novel Medical Diagnosis model for COVID-19 infection detection based on Deep Features and Bayesian Optimization

A pneumonia of unknown causes, which was detected in Wuhan, China, and spread rapidly throughout the world, was declared as Coronavirus disease 2019 (COVID-19). Thousands of people have lost their lives to this disease. Its negative effects on public health are ongoing. In this study, an intelligence computer-aided model that can automatically detect positive COVID-19 cases is proposed to support daily clinical applications. The proposed model is based on the convolution neural network (CNN) architecture and can automatically reveal discriminative features on chest X-ray images through its convolution with rich filter families, abstraction, and weight-sharing characteristics. Contrary to the generally used transfer learning approach, the proposed deep CNN model was trained from scratch. Instead of the pre-trained CNNs, a novel serial network consisting of five convolution layers was designed. This CNN model was utilized as a deep feature extractor. The extracted deep discriminative features were used to feed the machine learning algorithms, which were k-nearest neighbor, support vector machine (SVM), and decision tree. The hyperparameters of the machine learning models were optimized using the Bayesian optimization algorithm. The experiments were conducted on a public COVID-19 radiology database. The database was divided into two parts as training and test sets with 70% and 30% rates, respectively. As a result, the most efficient results were ensured by the SVM classifier with an accuracy of 98.97%, a sensitivity of 89.39%, a specificity of 99.75%, and an F-score of 96.72%. Consequently, a cheap, fast, and reliable intelligence tool has been provided for COVID-19 infection detection. The developed model can be used to assist field specialists, physicians, and radiologists in the decision-making process. Thanks to the proposed tool, the misdiagnosis rates can be reduced, and the proposed model can be used as a retrospective evaluation tool to validate positive COVID-19 infection cases.

Quantitative assessment of distant recurrence risk in early stage breast cancer using a nonlinear combination of pathological, clinical and imaging variables

Use of genomic assays to determine distant recurrence risk in patients with early stage breast cancer has expanded and is now included in the American Joint Committee on Cancer staging manual. Algorithmic alternatives using standard clinical and pathology information may provide equivalent benefit in settings where genomic tests, such as OncotypeDx, are unavailable. We developed an artificial neural network (ANN) model to nonlinearly estimate risk of distant cancer recurrence. In addition to clinical and pathological variables, we enhanced our model using intraoperatively determined global mammographic breast density (MBD) and local breast density (LBD). LBD was measured with optical spectral imaging capable of sensing regional concentrations of tissue constituents. A cohort of 56 ER+ patients with an OncotypeDx score was evaluated. We demonstrated that combining MBD/LBD measurements with clinical and pathological variables improves distant recurrence risk prediction accuracy, with high correlation (r = 0.98) to the OncotypeDx recurrence score.

Detection of Malignant and Benign Breast Cancer Using the ANOVA-BOOTSTRAP-SVM

Purpose

The aim of this research is to propose a modification of the ANOVA-SVM method that can increase accuracy when detecting benign and malignant breast cancer.

Methodology

We proposed a new method ANOVA-BOOTSTRAP-SVM. It involves applying the analysis of variance (ANOVA) to support vector machines (SVM) but we use the bootstrap instead of cross validation as a train/test splitting procedure. We have tuned the kernel and the C parameter and tested our algorithm on a set of breast cancer datasets.

Findings

By using the new method proposed, we succeeded in improving accuracy ranging from 4.5 percentage points to 8 percentage points depending on the dataset.

Research limitations

The algorithm is sensitive to the type of kernel and value of the optimization parameter C.

Practical implications

We believe that the ANOVA-BOOTSTRAP-SVM can be used not only to recognize the type of breast cancer but also for broader research in all types of cancer.

Originality/value

Our findings are important as the algorithm can detect various types of cancer with higher accuracy compared to standard versions of the Support Vector Machines.

COVID-19 detection using deep learning models to exploit Social Mimic Optimization and structured chest X-ray images using fuzzy color and stacking approaches

Coronavirus causes a wide variety of respiratory infections and it is an RNA-type virus that can infect both humans and animal species. It often causes pneumonia in humans. Artificial intelligence models have been helpful for successful analyses in the biomedical field. In this study, Coronavirus was detected using a deep learning model, which is a sub-branch of artificial intelligence. Our dataset consists of three classes namely: coronavirus, pneumonia, and normal X-ray imagery. In this study, the data classes were restructured using the Fuzzy Color technique as a preprocessing step and the images that were structured with the original images were stacked. In the next step, the stacked dataset was trained with deep learning models (MobileNetV2, SqueezeNet) and the feature sets obtained by the models were processed using the Social Mimic optimization method. Thereafter, efficient features were combined and classified using Support Vector Machines (SVM). The overall classification rate obtained with the proposed approach was 99.27%. With the proposed approach in this study, it is evident that the model can efficiently contribute to the detection of COVID-19 disease.

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Chest data obtained from patients infected with the new Coronavirus (COVID-19) were used.

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It was detected with deep learning models using COVID-19, normal, and pneumonia chest data.

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The original dataset was restructured with the Fuzzy Color technique and two datasets were stacked.

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Efficient features were selected by applying Social Mimic optimization to feature sets extracted from CNN models.

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The efficient features obtained were combined, and classified with a success rate of 99.27% with SVM method.

BrainMRNet: Brain tumor detection using magnetic resonance images with a novel convolutional neural network model

A brain tumor is a mass that grows unevenly in the brain and directly affects human life. This mass occurs spontaneously because of the tissues surrounding the brain or the skull. Surgical methods are generally preferred for the treatment of the brain tumor. Recently, models of deep learning in the diagnosis and treatment of diseases in the biomedical field have gained intense interest. In this study, we propose a new convolutional neural network model named BrainMRNet. This architecture is built on attention modules and hypercolumn technique; it has a residual network. Firstly, image is preprocessed in BrainMRNet. Then, this step is transferred to attention modules using image augmentation techniques for each image. Attention modules select important areas of the image and the image is transferred to convolutional layers. One of the most important techniques that the BrainMRNet model uses in the convolutional layers is hypercolumn. With the help of this technique, the features extracted from each layer of the BrainMRNet model are retained by the array structure in the last layer. The aim is to select the best and the most efficient features among the features maintained in the array. Accessible magnetic resonance images were used to detect brain tumor with the BrainMRNet model. BrainMRNet model is more successful than the pre-trained convolutional neural network models (AlexNet, GoogleNet, VGG-16) used in this study. The classification success achieved with the BrainMRNet model was 96.05%.