1
|
Li Y, Tao C, Fu D, Jafvert CT, Zhu T. Integrating molecular descriptors for enhanced prediction: Shedding light on the potential of pH to model hydrated electron reaction rates for organic compounds. CHEMOSPHERE 2024; 349:140984. [PMID: 38122944 DOI: 10.1016/j.chemosphere.2023.140984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2023] [Revised: 12/13/2023] [Accepted: 12/14/2023] [Indexed: 12/23/2023]
Abstract
Hydrated electron reaction rate constant (ke-aq) is an important parameter to determine reductive degradation efficiency and to mitigate the ecological risk of organic compounds (OCs). However, OC species morphology and the concentration of hydrated electrons (e-aq) in water vary with pH, complicating OC fate assessment. This study introduced the environmental variable of pH, to develop models for ke-aq for 701 data points using 3 descriptor types: (i) molecular descriptors (MD), (ii) quantum chemical descriptors (QCD), and (iii) the combination of both (MD + QCD). Models were screened using 2 descriptor screening methods (MLR and RF) and 14 machine learning (ML) algorithms. The introduction of QCDs that characterized the electronic structure of OCs greatly improved the performance of models while ensuring the need for fewer descriptors. The optimal model MLR-XGBoost(MD + QCD), which included pH, achieved the most satisfactory prediction: R2tra = 0.988, Q2boot = 0.861, R2test = 0.875 and Q2test = 0.873. The mechanistic interpretation using the SHAP method further revealed that QCDs, polarizability, volume, and pH had a great influence on the reductive degradation of OCs by e-aq. Overall, the electrochemical parameters (QCDs, pH) related to the solvent and solute are of significance and should be considered in any future ML modeling that assesses the fate of OCs in aquatic environment.
Collapse
Affiliation(s)
- Yi Li
- School of Environmental Science and Engineering, Yangzhou University, Yangzhou, 225127, Jiangsu, China
| | - Cuicui Tao
- School of Environmental Science and Engineering, Yangzhou University, Yangzhou, 225127, Jiangsu, China
| | - Dafang Fu
- School of Civil Engineering, Southeast University, Nanjing, 210096, China
| | - Chad T Jafvert
- Lyles School of Civil Engineering, and Environmental & Ecological Engineering, Purdue University, West Lafayette, IN, 47907, USA
| | - Tengyi Zhu
- School of Environmental Science and Engineering, Yangzhou University, Yangzhou, 225127, Jiangsu, China.
| |
Collapse
|
2
|
Solvent-free mechanochemical synthesis, hirshfeld surface analysis, crystal structure, spectroscopic characterization and NBO analysis of Bis(ammonium) Bis((4-methoxyphenyl) phosphonodithioato)-nickel (II) dihydrate with DFT studies. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127254] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
|
3
|
Nibila T, Ahamed TS, Soufeena P, Muraleedharan K, Periyat P, Aravindakshan K. Synthesis, structural characterization, Hirshfeld surface and DFT based reactivity, UV filter and NLO studies of Schiff base analogue of 4-aminoantipyrine. RESULTS IN CHEMISTRY 2020. [DOI: 10.1016/j.rechem.2020.100062] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
|
4
|
Ajayi TJ, Shapi M. Hirshfeld surface analysis and DFT studies on molecular structure, vibrational spectra, NMR chemical shifts and NBO analysis of Bis(2-hydroxyethyl(phenyl)carbamodithioate) nickel (II). J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.07.060] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
|
5
|
Zafar MN, Perveen F, Naz A, Mughal EU, Gul-e-Saba, Hina K. Synthesis, Characterization, and Catalytic Activity of Heteroleptic Rhodium Complex for C–N Couplings. RUSS J COORD CHEM+ 2019. [DOI: 10.1134/s1070328419010135] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
6
|
pH-Dependent Antibiotic Gatifloxacin Interacting with Cationic Surfactant: Insights from Spectroscopic and Chromatographic Measurements. J SOLUTION CHEM 2018. [DOI: 10.1007/s10953-018-0811-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
|
7
|
Nazar MF, Azeem W, Rana UA, Ashfaq M, Lashin A, Al-Arifi N, Rahman HMAU, Lazim AM, Mahmood A. pH-dependent probing of levofloxacin assimilated in surfactant mediated assemblies: Insights from photoluminescent and chromatographic measurements. J Mol Liq 2016. [DOI: 10.1016/j.molliq.2016.04.044] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
|
8
|
Nazar MF, Badshah A, Mahmood A, Zafar MN, Janjua MRSA, Raza MA, Hussain R. Synthesis, spectroscopic characterization, and computed optical analysis of green fluorescent cyclohexenone derivatives. J PHYS ORG CHEM 2015. [DOI: 10.1002/poc.3512] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
| | - Amir Badshah
- National Center for Nanoscience and Technology; Beiyitiao No. 11, Zhongguancun Beijing 100190 China
| | - Asif Mahmood
- Department of Chemistry; University of Sargodha; Sargodha 40100 Pakistan
| | | | | | | | - Riaz Hussain
- Physics Division (PD); PINSTECH; P.O. Nilore 45650 Islamabad Pakistan
| |
Collapse
|
9
|
Spectral-luminescent properties of pH-sensitive azo fluorophore in complexes with quaternary ammonium disinfectants. Colloid Polym Sci 2015. [DOI: 10.1007/s00396-015-3687-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
10
|
Li Y, Liu YY, Chen NQ, Lü KZ, Xiong XH, Li J. One-Pot Regioselective Synthesis of Novel Oximino Ester-Containing 1-Aryl-4-chloro-3-oxypyrazoles as Potential Fungicides. Helv Chim Acta 2014. [DOI: 10.1002/hlca.201300407] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
|
11
|
Kart HH, Ozdemir Kart S, Karakuş M, Kurt M. Ab initio/DFT calculations of butyl ammonium salt of O,O'-dibornyl dithiophosphate. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 129:421-428. [PMID: 24747929 DOI: 10.1016/j.saa.2014.03.076] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2014] [Revised: 03/05/2014] [Accepted: 03/23/2014] [Indexed: 06/03/2023]
Abstract
O,O'-dibornyl dithiophosphete has been synthesized by the reaction of P2S5 and borneol in toluene. Fourier Transform Infrared spectra (FT-IR) of the title compound are measured. The molecular geometry, vibrational frequencies, infrared intensities and NMR spectrum of the title compound in the ground state have been calculated by using the density functional theory (DFT) and ab initio Hartree-Fock (HF) methods with the basis set of 6-31G(d). The computed bond lengths and bond angles show the good agreement with the experimental data. Moreover, the vibrational frequencies are calculated and the scaled values have been compared with experimental FT-IR spectra. Assignments of the vibrational modes are made on the basis of total energy distribution (TED) calculated with scaled quantum mechanical (SQM) method. The observed and calculated FT-IR and NMR spectra are in good agreement with each other.
Collapse
Affiliation(s)
- H H Kart
- Department of Physics, Pamukkale University, Kinikli, 20017 Denizli, Turkey.
| | - S Ozdemir Kart
- Department of Physics, Pamukkale University, Kinikli, 20017 Denizli, Turkey
| | - M Karakuş
- Department of Chemistry, Pamukkale University, Kinikli, 20017 Denizli, Turkey
| | - M Kurt
- Department of Physics, Ahi Evran University, 40100 Kırşehir, Turkey
| |
Collapse
|
12
|
Kumru M, Bardakçı T, Güner S. DFT calculations and experimental FT-IR, dispersive-Raman and EPR spectral studies of Copper (II) chloride complex with 3-amino-1-methylbenzene. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 123:187-193. [PMID: 24394534 DOI: 10.1016/j.saa.2013.12.068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2013] [Revised: 12/09/2013] [Accepted: 12/11/2013] [Indexed: 06/03/2023]
Abstract
In this study, we present the synthesis and the characterization of Copper (II) chloride complex with 3-amino-1-methylbenzene (3A1MB). This complex was characterized by vibrational and EPR spectroscopic techniques and elemental analysis. The molecular structure and spectrometry of this complex: Cu(3A1MB)2Cl2 and its ligand: 3A1MB have been investigated theoretically by performing DFT/B3LYP calculations. Cu(3A1MB)2Cl2 has been optimized as two conformers and the more stable conformer is determined. The optimized geometries and calculated vibrational frequencies have been evaluated via comparison with experimental values, and the normal modes were assigned on the basis of the percent potential energy distribution (PED). A good agreement between calculated and experimental data is observed.
Collapse
Affiliation(s)
- Mustafa Kumru
- Department of Physics, Faculty of Arts and Sciences, Fatih University, Istanbul, Turkey
| | - Tayyibe Bardakçı
- Department of Physics, Faculty of Arts and Sciences, Fatih University, Istanbul, Turkey.
| | - Sadik Güner
- Department of Physics, Faculty of Arts and Sciences, Fatih University, Istanbul, Turkey
| |
Collapse
|
13
|
Karakus M, Solak S, Hökelek T, Dal H, Bayrakdar A, Özdemir Kart S, Karabacak M, Kart HH. Synthesis, crystal structure and ab initio/DFT calculations of a derivative of dithiophosphonates. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 122:582-590. [PMID: 24334059 DOI: 10.1016/j.saa.2013.11.094] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2012] [Revised: 03/07/2013] [Accepted: 11/14/2013] [Indexed: 06/03/2023]
Abstract
The compound 2 has been synthesized from the reaction of 2,4-Bis(4-methoxyphenyl)-1,3,2,4-dithiadiphosphetane-2,4-disulfide and (R)-1-[3,5-Bis(trifloromethyl)phenyl]ethanol in toluene. The obtained crude dithiophosphonic acid 1 has been treated with the excess of N(C2H5)3 to give rise to 2, [(+HN(C2H5)3][O-CH3CH-C6H3(CF3)2)(CH3OC6H4)PS2(-)]. The compound 2 has been characterized by using the spectroscopic methods such as IR, (1)H, (13)C, (31)P NMR and structural analysing method such as X-ray crystallography. It crystallizes in the orthorhombic system, whose space group is P212121. It consists of a dithiophosphonate bridged methoxyphenyl and bis(triflorophenylethyl) groups and a triethylammonium moiety linked by N-H⋯S and C-H⋯F hydrogen bonds. In the crystal structure, the C17H14F6O2PS2 molecule is elongated along the b-axis and stacked along the a-axis. The triethylammonium, N(CH2CH3)3, molecule fill in the cavities between the C17H14F6O2PS2 molecule. Moreover, ab initio methods based on Hartree-Fock (HF) and Density Functional Theory (DFT) calculations with the basis set of 6-31G(d) are also carried out to determine the molecular structural properties and to calculate FT-IR and NMR spectrum of the compound 2. The experimental results and theoretical calculations have been compared, and they are found to be in good agreement.
Collapse
Affiliation(s)
- M Karakus
- Department of Chemistry, Faculty of Arts and Sciences, Pamukkale University, Kinikli, 20017 Denizli, Turkey
| | - S Solak
- Department of Chemistry, Faculty of Arts and Sciences, Pamukkale University, Kinikli, 20017 Denizli, Turkey
| | - T Hökelek
- Department of Physics, Hacettepe University, 06800 Beytepe, Ankara, Turkey
| | - H Dal
- Department of Chemistry, Faculty of Science, Anadolu University, 26470 Eskisehir, Turkey
| | - A Bayrakdar
- Department of Physics, Faculty of Arts and Sciences, Pamukkale University, Kinikli, 20017 Denizli, Turkey
| | - S Özdemir Kart
- Department of Physics, Faculty of Arts and Sciences, Pamukkale University, Kinikli, 20017 Denizli, Turkey
| | - M Karabacak
- Department of Mechatronics Engineering, H.F.T. Technology Faculty, Celal Bayar University, 45400 Turgutlu, Manisa, Turkey
| | - H H Kart
- Department of Physics, Faculty of Arts and Sciences, Pamukkale University, Kinikli, 20017 Denizli, Turkey.
| |
Collapse
|
14
|
Li Y, Liu YY, Chen XJ, Xiong XH, Li FS. Synthesis, spectroscopic characterization, X-ray structure, and DFT calculations of some new 1,4-dihydro-2,6-dimethyl-3,5-pyridinedicarboxamides. PLoS One 2014; 9:e91361. [PMID: 24625887 PMCID: PMC3953339 DOI: 10.1371/journal.pone.0091361] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2014] [Accepted: 02/11/2014] [Indexed: 11/30/2022] Open
Abstract
A series of novel 1,4-dihydro-2,6- dimethyl-3,5-pyridinedicarboxamides were synthesized and characterized by infrared absorption spectrum (IR), proton nuclear magnetic resonance (1H NMR), elemental analysis, ultraviolet spectrum (UV), and fluorescence techniques, together with X-ray single crystal diffraction. The results of density functional theory (DFT) and time-dependent density functional theory (TDDFT) calculations provided a reasonable explanation on the molecular structures, the molecular frontier orbital, and the spectra of electronic absorption and emission. The present work will be helpful to systematically understanding of the structures and the optical properties of 1,4-dihydropyridines for studying the structure-activity relationship and to develop new drugs and their analytical methods.
Collapse
Affiliation(s)
- Yi Li
- College of Food Science and Light Industry, Nanjing Tech University, Nanjing, China
| | - Yuan-Yuan Liu
- Department of Chemical and Pharmaceutical Engineering, Southeast University ChengXian College, Nanjing, China
- * E-mail: (YYL); (FSL)
| | - Xue-Jun Chen
- College of Science, Nanjing Tech University, Nanjing, China
| | - Xiao-Hui Xiong
- College of Food Science and Light Industry, Nanjing Tech University, Nanjing, China
| | - Fang-Shi Li
- College of Science, Nanjing Tech University, Nanjing, China
- * E-mail: (YYL); (FSL)
| |
Collapse
|
15
|
Crystal structures, vibrational spectra, and fungicidal activity of 1,5-diaryl-3-oxypyrazoles. Molecules 2014; 19:1302-16. [PMID: 24451250 PMCID: PMC6271540 DOI: 10.3390/molecules19011302] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2013] [Revised: 01/09/2014] [Accepted: 01/14/2014] [Indexed: 11/17/2022] Open
Abstract
The aryloxypyrazole structure is present in a number of bioactive molecules. Four 1,5-diaryl-3-oxypyrazoles containing benzoyl (I), thiazolidinethione (II and III) or per-O-acetylated glucopyranosyl (IV) moieties were characterized by single-crystal X-ray diffraction. Compounds I and II crystallize in a triclinic P-1 system, whereas III and IV crystallize in an orthorhombic Pbca and a monoclinic P21 space groups, respectively. The dihedral angles between the two benzene rings of the pyrazole are 61.33° (I), 62.87° (II), 57.09° (III) and 70.25° (IV). The structures were stabilized by classical intra- (C-H···S for II and III, C-H···O for IV) and intermolecular (C-H···O for I and IV) H-bonds, as well as intermolecular C-H···π stacking interactions. The theoretical FTIR results showed good agreement with the experimental data. Compounds IV, II and III showed moderate fungicidal activity against Sclerotinia sclerotiorum and Gibberella zeae. The structure-activity relationships were discussed.
Collapse
|
16
|
Yang XL, Feng ZQ, Hao LY. 3-Methyl-benzene-1,2-diamine. Acta Crystallogr Sect E Struct Rep Online 2012; 68:o3346. [PMID: 23476183 PMCID: PMC3588947 DOI: 10.1107/s1600536812046120] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2012] [Accepted: 11/08/2012] [Indexed: 11/30/2022]
Abstract
The title compound, C7H10N2, was synthesized from 2-methyl-6-nitroaniline by a reduction reaction. In the crystal, molecules are linked via N—H⋯N hydrogen bonds, forming two-dimensional networks lying parallel to (100). These networks are stabilized by C—H⋯π and N—H⋯π interactions.
Collapse
Affiliation(s)
- Xiao-Li Yang
- School of Material Engineering, Jinling Institute of Technology, Nanjing 211169, People's Republic of China
| | | | | |
Collapse
|