An improved 3-D Look--Locker imaging method for T(1) parameter estimation

Analysis Protocols for MRI Mapping of Renal T1

The computation of T₁ maps from MR datasets represents an important step toward the precise characterization of kidney disease models in small animals. Here the main strategies to analyze renal T₁ mapping datasets derived from small rodents are presented. Suggestions are provided with respect to essential software requirements, and advice is provided as to how dataset completeness and quality may be evaluated. The various fitting models applicable to T₁ mapping are presented and discussed. Finally, some methods are proposed for validating the obtained results.This chapter is based upon work from the COST Action PARENCHIMA, a community-driven network funded by the European Cooperation in Science and Technology (COST) program of the European Union, which aims to improve the reproducibility and standardization of renal MRI biomarkers. This analysis protocol chapter is complemented by two separate chapters describing the basic concept and experimental procedure.

Flip angle mapping with the accelerated 3D look-locker sequence

PURPOSE

A new approach to mapping the flip angle quickly and efficiently in 3D based on the Look-Locker technique is presented.

METHODS

We modified the accelerated 3D Look-Locker T1 measurement technique to allow rapid measurement of flip angle. By removing the inversion pulses and interleaving two radio frequency pulses with different amplitude, it is possible to fit directly for the true flip angle using a reduced number of parameters. This technique, non-inverted Double Angle Look-Locker, allows quick and efficient mapping of the flip angle in 3D.

RESULTS

non-inverted Double Angle Look-Locker is validated in vitro against the actual flip angle imaging technique for a range of flip angles and T1 values. Flip angle maps produced with non-inverted Double Angle Look-Locker can be acquired in approximately 1 min, and are accurate to within 10% of the actual flip angle imaging measurement. It is shown to accurately measure the excited slab profile of several different pulses. An application to correcting in vivo DESPOT T1 data is presented.

CONCLUSION

The presented technique is a rapid method for mapping flip angles across a 3D volume, capable of producing a flip angle map in approximately 1 min.

Optimizing the magnetization-prepared rapid gradient-echo (MP-RAGE) sequence

The three-dimension (3D) magnetization-prepared rapid gradient-echo (MP-RAGE) sequence is one of the most popular sequences for structural brain imaging in clinical and research settings. The sequence captures high tissue contrast and provides high spatial resolution with whole brain coverage in a short scan time. In this paper, we first computed the optimal k-space sampling by optimizing the contrast of simulated images acquired with the MP-RAGE sequence at 3.0 Tesla using computer simulations. Because the software of our scanner has only limited settings for k-space sampling, we then determined the optimal k-space sampling for settings that can be realized on our scanner. Subsequently we optimized several major imaging parameters to maximize normal brain tissue contrasts under the optimal k-space sampling. The optimal parameters are flip angle of 12°, effective inversion time within 900 to 1100 ms, and delay time of 0 ms. In vivo experiments showed that the quality of images acquired with our optimal protocol was significantly higher than that of images obtained using recommended protocols in prior publications. The optimization of k-spacing sampling and imaging parameters significantly improved the quality and detection sensitivity of brain images acquired with MP-RAGE.

Improved three-dimensional Look-Locker acquisition scheme and angle map filtering procedure for T1 estimation

The three-dimensional (3D) Look-Locker (LL) acquisition is a widely used fast and efficient T1 mapping method. However, the multi-shot approach of 3D LL acquisition can introduce reconstruction artifacts that result in intensity distortions. Traditional 3D LL acquisition generally utilizes a centric encoding scheme that is limited to a single phase-encoding direction in k space. To optimize k-space segmentation, an elliptical scheme with two phase-encoding directions is implemented for the LL acquisition. This elliptical segmentation can reduce the intensity errors in the reconstructed images and improve the final T1 estimation. One of the major sources of error in LL-based T1 estimation is a lack of accurate knowledge of the actual flip angle. A multi-parameter curve-fitting procedure can account for some of the variability in the flip angle. However, curve fitting can also introduce errors in the estimated flip angle that can result in incorrect T1 values. A filtering procedure based on goodness of fit (GOF) is proposed to reduce the effect of false flip angle estimates. Filtering based on GOF weighting can remove probable incorrect angles that result in bad curve fitting. Simulation, phantom and in vivo studies have demonstrated that these techniques can improve the accuracy of 3D LL T1 estimation.

Myocardial T1 mapping with MRI: comparison of look-locker and MOLLI sequences

PURPOSE

To evaluate the relationship between "Look-Locker" (LL) and modified Look-Locker Inversion recovery (MOLLI) approaches for T1 mapping of the myocardium.

MATERIALS AND METHODS

A total of 168 myocardial T1 maps using MOLLI and 165 maps using LL were obtained in human subjects at 1.5 Tesla. The T1 values of the myocardium were calculated before and at five time points after gadolinium administration. All time and heart rate normalizations were done. The T1 values obtained were compared to determine the absolute and bias agreement.

RESULTS

The precontrast global T1 values were similar when measured by the LL and by MOLLI technique (mean, 1004.9 ms ± 120.3 versus 1034.1 ms ± 53.1, respectively, P = 0.26). Postcontrast myocardial T1 time from LL was significantly longer than MOLLI from 5 to 25 min (mean difference, LL - MOLLI was +61.8 ± 46.4 ms, P < 0.001). No significant differences in T1 values were noted between long and short axis measurements for either MOLLI or LL.

CONCLUSION

Postcontrast LL and MOLLI showed very good agreement, although LL values are higher than MOLLI. Precontrast T1 values showed good agreement, however LL has greater limits of agreement. Short and long axis planes can reliably assess T1 values.

An oxygen-consuming phantom simulating perfused tissue to explore oxygen dynamics and (19)F MRI oximetry

OBJECTIVE

This study presents a reproducible phantom which mimics oxygen-consuming tissue and can be used for the validation of (19)F MRI oximetry.

MATERIALS AND METHODS

The phantom consists of a haemodialysis filter of which the outer compartment is filled with a gelatin matrix containing viable yeast cells. Perfluorocarbon emulsions can be added to the gelatin matrix to simulate sequestered perfluorocarbons. A blood-substituting perfluorocarbon fluid is pumped through the lumen of the fibres in the filter. (19)F relaxometry MRI is performed with a fast 2D Look-Locker imaging sequence on a clinical 3T scanner.

RESULTS

Acute and perfusion-related hypoxia were simulated and imaged spatially and temporally using the phantom.

CONCLUSIONS

The presented experimental setup can be used to simulate oxygen consumption by somatic cells in vivo and for validating computational biophysical models of hypoxia, as measured with (19)F MRI oximetry.

Uncertainty and bias in contrast concentration measurements using spoiled gradient echo pulse sequences

Dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) is a widely used technique for assessing tissue physiology. Spoiled gradient echo (SPGR) pulse sequences are one of the most common methods for acquisition of DCE-MRI data, providing high temporal and spatial resolution with strong T(1)-weighting. Conversion of SPGR signal to concentration is briefly reviewed, and a new closed-form expression for concentration measurement uncertainty for finite signal-to-noise ratio (SNR) and baseline scan time is derived. This result is applicable to arbitrary concentration-dependent relaxation rate and is valid over the same domain as the theoretical SPGR signal equation. Expressions for the lower and upper bounds on measurable concentration are also derived. The existence of a concentration- and tissue-dependent optimal flip angle that minimizes concentration uncertainty is demonstrated and it is shown that, for clinically relevant pulse sequence parameters, this optimal flip angle is significantly larger than the corresponding Ernst angle. Analysis of three pulse sequences from the DCE-MRI literature shows that optimization of flip angle using the methods discussed here leads to potential improvements of 10-1166% in effective SNR over the 0.5-5.0 mM concentration range with minimal or no loss of measurement accuracy down to 0.1 mM. In vivo data from three study patients provide further support for our theoretical expression for concentration measurement uncertainty, with predicted and experimental estimates agreeing to within +/- 30%. Equations for concentration bias resulting from biases in flip angle and from pre-contrast relaxation time and contrast relaxivity (both longitudinal and transverse) are also derived in closed-form. The resulting equations show the potential for significant contributions to bias in concentration measurement arising from even relatively small mis-specification of flip angle and/or pre-contrast longitudinal relaxation time, particularly at high contrast concentrations.

Phase-encoding strategies for optimal spatial resolution and T1 accuracy in 3D Look-Locker imaging

The Look-Locker (LL) imaging method provides an accurate and efficient approach for mapping the spin-lattice relaxation time, T(1). However, the same recovery of signal during LL image acquisition required to estimate T(1) also results in unwanted modulation of k-space. This is particularly problematic with 3D LL imaging as the number of phase-encoding steps during the recovery interval (e.g., 16) increases in an effort to reduce imaging times. This modulation of k-space has the effect of introducing a point spread function (PSF), which can lead to either image blurring (if the earlier tip angles are assigned to the centre of k-space) or edge enhancement (if the earlier tip angles are assigned to the edges of k-space), thus corrupting T(1) estimation, particularly for small objects. In this study, the PSF and its effect on the acquired images for four different interleaved phase-encode schemes (centric-in, centric-out, sequential and hybrid-sequential) are simulated for a range of T(1), tip angle and 3D LL acquisition parameters expected in practice. It is shown by simulation and confirmed experimentally in phantoms that a hybrid sequential phase-encoding scheme reduces image blurring while maintaining T(1) accuracy ( approximately 2%) and precision (2%) over a range of object sizes down to 2 pixels (2 mm).