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For: Deepa P, Kolandaivel P, Senthilkumar K. Theoretical investigation of interaction between psoralen and altretamine with stacked DNA base pairs. Materials Science and Engineering: C 2012;32:423-31. [DOI: 10.1016/j.msec.2011.11.014] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Number Cited by Other Article(s)
1
Woźniczka M, Sutradhar M, Chmiela M, Gonciarz W, Pająk M. Equilibria in the aqueous system of cobalt(II) based on 2-picolinehydroxamic acid and N-(2-hydroxybenzyl)phenylalanine and its ability to inhibit the propagation of cancer cells. J Inorg Biochem 2023;249:112389. [PMID: 37806005 DOI: 10.1016/j.jinorgbio.2023.112389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 09/15/2023] [Accepted: 09/25/2023] [Indexed: 10/10/2023]
2
Deepa P, Thirumeignanam D. Understanding the impact of halogen functional group (Br, Cl, F, OH) in amprenavir ligand of the HIV protease. J Biomol Struct Dyn 2023;41:12157-12170. [PMID: 36645135 DOI: 10.1080/07391102.2023.2166121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Accepted: 01/01/2023] [Indexed: 01/17/2023]
3
Alirezapour F, Bamdad K, Khanmohammadi A, Ebrahimi N. A computational study on acetaminophen drug complexed with Mn+, Fe2+, Co+, Ni2+, and Cu+ ions: structural analysis, electronic properties, and solvent effects. J Mol Model 2022;28:302. [PMID: 36066774 DOI: 10.1007/s00894-022-05305-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2022] [Accepted: 08/30/2022] [Indexed: 11/24/2022]
4
Sánchez-González Á, Grenut P, Gil A. Influence of conventional hydrogen bonds in the intercalation of phenanthroline derivatives with DNA: The important role of the sugar and phosphate backbone. J Comput Chem 2022;43:804-821. [PMID: 35297513 PMCID: PMC9313584 DOI: 10.1002/jcc.26836] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Accepted: 02/28/2022] [Indexed: 12/14/2022]
5
Sánchez-González Á, Bandeira NAG, Ortiz de Luzuriaga I, Martins FF, Elleuchi S, Jarraya K, Lanuza J, Lopez X, Calhorda MJ, Gil A. New Insights on the Interaction of Phenanthroline Based Ligands and Metal Complexes and Polyoxometalates with Duplex DNA and G-Quadruplexes. Molecules 2021;26:4737. [PMID: 34443326 PMCID: PMC8397986 DOI: 10.3390/molecules26164737] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2021] [Revised: 07/28/2021] [Accepted: 07/29/2021] [Indexed: 12/24/2022]  Open
6
Alirezapour F, Khanmohammadi A. Theoretical study on the interaction of phenylalaninal with group IA (Li + , Na + , K + ) and IIA (Be 2+ , Mg 2+ , Ca 2+ ) metal cations. J CHIN CHEM SOC-TAIP 2021. [DOI: 10.1002/jccs.202000383] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
7
Alirezapour F, Khanmohammadi A. The effect of cation-π interactions on the stability and electronic properties of anticancer drug Altretamine: a theoretical study. Acta Crystallogr C Struct Chem 2020;76:982-991. [PMID: 33016269 DOI: 10.1107/s2053229620012589] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Accepted: 09/15/2020] [Indexed: 11/10/2022]  Open
8
Thomaz DV, de Oliveira MG, Rodrigues ESB, da Silva VB, dos Santos PA. Physicochemical Investigation of Psoralen Binding to Double Stranded DNA through Electroanalytical and Cheminformatic Approaches. Pharmaceuticals (Basel) 2020;13:ph13060108. [PMID: 32481669 PMCID: PMC7344847 DOI: 10.3390/ph13060108] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Revised: 05/13/2020] [Accepted: 05/24/2020] [Indexed: 02/05/2023]  Open
9
Understanding the potency of malarial ligand (D44) in plasmodium FKBP35 and modelled halogen atom (Br, Cl, F) functional groups. J Mol Graph Model 2020;97:107553. [PMID: 32035313 DOI: 10.1016/j.jmgm.2020.107553] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2019] [Revised: 01/10/2020] [Accepted: 01/27/2020] [Indexed: 11/21/2022]
10
Hrivnák T, Budzák Š, Reis H, Zaleśny R, Carbonnière P, Medveď M. Electric properties of hydrated uracil: From micro- to macrohydration. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2018.11.044] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
11
Deepa P, Thirumeignanam D, Kolandaivel P. An overview about the impact of hinge region towards the anticancer binding affinity of the Ck2 ligands: a quantum chemical analysis. J Biomol Struct Dyn 2018;37:3859-3876. [DOI: 10.1080/07391102.2018.1533498] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
12
Palanisamy D, Pandiyan BV, Duraisamy T, Kolandaivel P. Understanding the potency of fatty acids with the amino acid side chains of bovine β lactoglobulin—A quantum chemical approach. J Mol Graph Model 2017;74:105-116. [DOI: 10.1016/j.jmgm.2017.03.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2016] [Revised: 03/11/2017] [Accepted: 03/15/2017] [Indexed: 10/19/2022]
13
Galliot A, Gil A, Calhorda MJ. Effects of oxygenation on the intercalation of 1,10-phenanthroline-5,6/4,7-dione between DNA base pairs: a computational study. Phys Chem Chem Phys 2017. [PMID: 28621352 DOI: 10.1039/c7cp00532f] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
14
Salehzadeh S, Maleki F. New equation for calculating total interaction energy in one noncyclic ABC triad and new insights into cooperativity of noncovalent bonds. J Comput Chem 2016;37:2799-2807. [PMID: 27753119 DOI: 10.1002/jcc.24505] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2016] [Revised: 09/02/2016] [Accepted: 09/07/2016] [Indexed: 11/10/2022]
15
Gil A, Branchadell V, Calhorda MJ. A theoretical study of methylation and CH/π interactions in DNA intercalation: methylated 1,10-phenanthroline in adenine–thymine base pairs. RSC Adv 2016. [DOI: 10.1039/c6ra15495f] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]  Open
16
Gil A, Melle-Franco M, Branchadell V, Calhorda MJ. How the Intercalation of Phenanthroline Affects the Structure, Energetics, and Bond Properties of DNA Base Pairs: Theoretical Study Applied to Adenine–Thymine and Guanine–Cytosine Tetramers. J Chem Theory Comput 2015;11:2714-28. [DOI: 10.1021/ct5006104] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
17
Hokmabady L, Raissi H, Khanmohammadi A. Interactions of the 5-fluorouracil anticancer drug with DNA pyrimidine bases: a detailed computational approach. Struct Chem 2015. [DOI: 10.1007/s11224-015-0578-8] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
18
Wang L, Tao M, Zhang G, Li S, Gong D. Partial intercalative binding of the food colorant erythrosine to herring sperm DNA. RSC Adv 2015. [DOI: 10.1039/c5ra19626d] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
19
Azadbakht A, Gholivand MB. polyethyleneimine wrapped carbon nanotubes in situ formed gold nanoparticles decorated with DNA and NAD+ as a novel bioeletrochemical sensing platform. Electrochim Acta 2014. [DOI: 10.1016/j.electacta.2014.04.046] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
20
Zhou X, Zhang G, Wang L. Probing the binding mode of psoralen to calf thymus DNA. Int J Biol Macromol 2014;67:228-37. [DOI: 10.1016/j.ijbiomac.2014.03.038] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2014] [Revised: 03/13/2014] [Accepted: 03/14/2014] [Indexed: 01/31/2023]
21
Mirmoghtadaie L, Ensafi AA, Kadivar M, Norouzi P. Highly selective electrochemical biosensor for the determination of folic acid based on DNA modified-pencil graphite electrode using response surface methodology. MATERIALS SCIENCE & ENGINEERING. C, MATERIALS FOR BIOLOGICAL APPLICATIONS 2013;33:1753-8. [PMID: 23827633 DOI: 10.1016/j.msec.2012.12.090] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2012] [Revised: 11/21/2012] [Accepted: 12/28/2012] [Indexed: 11/30/2022]
22
Alparone A. Linear and nonlinear optical properties of nucleic acid bases. Chem Phys 2013. [DOI: 10.1016/j.chemphys.2012.11.005] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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