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Yi Y, Jin X, Chen M, Coldea TE, Zhao H. Surfactant-mediated bio-manufacture: A unique strategy for promoting microbial biochemicals production. Biotechnol Adv 2024; 73:108373. [PMID: 38704106 DOI: 10.1016/j.biotechadv.2024.108373] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 04/03/2024] [Accepted: 05/01/2024] [Indexed: 05/06/2024]
Abstract
Biochemicals are widely used in the medicine and food industries and are more efficient and safer than synthetic chemicals. The amphipathic surfactants can interact with the microorganisms and embed the extracellular metabolites, which induce microbial metabolites secretion and biosynthesis, performing an attractive prospect of promoting the biochemical production. However, the commonness and differences of surfactant-mediated bio-manufacture in various fields are largely unexplored. Accordingly, this review comprehensively summarized the properties of surfactants, different application scenarios of surfactant-meditated bio-manufacture, and the mechanism of surfactants increasing metabolites production. Various biochemical productions such as pigments, amino acids, and alcohols could be enhanced using the cloud point and the micelles of surfactants. Besides, the amphiphilicity of surfactants also promoted the utilization of fermentation substrates, especially lignocellulose and waste sludge, by microorganisms, indirectly increasing the metabolites production. The increase in target metabolites production was attributed to the surfactants changing the permeability and composition of the cell membrane, hence improving the secretion ability of microorganisms. Moreover, surfactants could regulate the energy metabolism, the redox state and metabolic flow in microorganisms, which induced target metabolites synthesis. This review aimed to broaden the application fields of surfactants and provide novel insights into the production of microbial biochemicals.
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Affiliation(s)
- Yunxin Yi
- School of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Xiaofan Jin
- School of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Moutong Chen
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China
| | - Teodora Emilia Coldea
- Faculty of Food Science and Technology, University of Agricultural Sciences and Veterinary Medicine of Cluj-Napoca, Cluj-Napoca 400372, Romania
| | - Haifeng Zhao
- School of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China; Research Institute for Food Nutrition and Human Health, Guangzhou 510640, China.
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2
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Zhou J, Pan Q, Xue Y, Dong Y, Chen Y, Huang L, Zhang B, Liu ZQ, Zheng Y. Synthetic biology for Monascus: From strain breeding to industrial production. Biotechnol J 2024; 19:e2400180. [PMID: 39014924 DOI: 10.1002/biot.202400180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Revised: 06/25/2024] [Accepted: 06/29/2024] [Indexed: 07/18/2024]
Abstract
Traditional Chinese food therapies often motivate the development of modern medicines, and learning from them will bring bright prospects. Monascus, a conventional Chinese fungus with centuries of use in the food industry, produces various metabolites, including natural pigments, lipid-lowering substances, and other bioactive ingredients. Recent Monascus studies focused on the metabolite biosynthesis mechanisms, strain modifications, and fermentation process optimizations, significantly advancing Monascus development on a lab scale. However, the advanced manufacture for Monascus is lacking, restricting its scale production. Here, the synthetic biology techniques and their challenges for engineering filamentous fungi were summarized, especially for Monascus. With further in-depth discussions of automatic solid-state fermentation manufacturing and prospects for combining synthetic biology and process intensification, the industrial scale production of Monascus will succeed with the help of Monascus improvement and intelligent fermentation control, promoting Monascus applications in food, cosmetic, agriculture, medicine, and environmental protection industries.
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Affiliation(s)
- Junping Zhou
- The National and Local Joint Engineering Research Center for Biomanufacturing of Chiral Chemicals, Zhejiang University of Technology, Hangzhou, China
| | - Qilu Pan
- The National and Local Joint Engineering Research Center for Biomanufacturing of Chiral Chemicals, Zhejiang University of Technology, Hangzhou, China
| | - Yinan Xue
- The National and Local Joint Engineering Research Center for Biomanufacturing of Chiral Chemicals, Zhejiang University of Technology, Hangzhou, China
| | - Yaping Dong
- The National and Local Joint Engineering Research Center for Biomanufacturing of Chiral Chemicals, Zhejiang University of Technology, Hangzhou, China
| | - Yihong Chen
- The National and Local Joint Engineering Research Center for Biomanufacturing of Chiral Chemicals, Zhejiang University of Technology, Hangzhou, China
| | - Lianggang Huang
- The National and Local Joint Engineering Research Center for Biomanufacturing of Chiral Chemicals, Zhejiang University of Technology, Hangzhou, China
| | - Bo Zhang
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, China
| | - Zhi-Qiang Liu
- The National and Local Joint Engineering Research Center for Biomanufacturing of Chiral Chemicals, Zhejiang University of Technology, Hangzhou, China
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, China
| | - Yuguo Zheng
- The National and Local Joint Engineering Research Center for Biomanufacturing of Chiral Chemicals, Zhejiang University of Technology, Hangzhou, China
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3
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Jia X, Song J, Wu Y, Feng S, Sun Z, Hu Y, Yu M, Han R, Zeng B. Strategies for the Enhancement of Secondary Metabolite Production via Biosynthesis Gene Cluster Regulation in Aspergillus oryzae. J Fungi (Basel) 2024; 10:312. [PMID: 38786667 PMCID: PMC11121810 DOI: 10.3390/jof10050312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2024] [Revised: 04/17/2024] [Accepted: 04/22/2024] [Indexed: 05/25/2024] Open
Abstract
The filamentous fungus Aspergillus oryzae (A. oryzae) has been extensively used for the biosynthesis of numerous secondary metabolites with significant applications in agriculture and food and medical industries, among others. However, the identification and functional prediction of metabolites through genome mining in A. oryzae are hindered by the complex regulatory mechanisms of secondary metabolite biosynthesis and the inactivity of most of the biosynthetic gene clusters involved. The global regulatory factors, pathway-specific regulatory factors, epigenetics, and environmental signals significantly impact the production of secondary metabolites, indicating that appropriate gene-level modulations are expected to promote the biosynthesis of secondary metabolites in A. oryzae. This review mainly focuses on illuminating the molecular regulatory mechanisms for the activation of potentially unexpressed pathways, possibly revealing the effects of transcriptional, epigenetic, and environmental signal regulation. By gaining a comprehensive understanding of the regulatory mechanisms of secondary metabolite biosynthesis, strategies can be developed to enhance the production and utilization of these metabolites, and potential functions can be fully exploited.
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Affiliation(s)
- Xiao Jia
- College of Pharmacy, Shenzhen Technology University, Shenzhen 518118, China; (X.J.); (J.S.); (Y.W.); (S.F.); (Z.S.); (Y.H.); (M.Y.); (R.H.)
- College of Materials and Energy, Jiangxi Science and Technology Normal University, Nanchang 330013, China
| | - Jiayi Song
- College of Pharmacy, Shenzhen Technology University, Shenzhen 518118, China; (X.J.); (J.S.); (Y.W.); (S.F.); (Z.S.); (Y.H.); (M.Y.); (R.H.)
- College of Life and Health Sciences, Northeastern University, No. 3-11, Wenhua Road, Shenyang 110819, China
| | - Yijian Wu
- College of Pharmacy, Shenzhen Technology University, Shenzhen 518118, China; (X.J.); (J.S.); (Y.W.); (S.F.); (Z.S.); (Y.H.); (M.Y.); (R.H.)
| | - Sai Feng
- College of Pharmacy, Shenzhen Technology University, Shenzhen 518118, China; (X.J.); (J.S.); (Y.W.); (S.F.); (Z.S.); (Y.H.); (M.Y.); (R.H.)
| | - Zeao Sun
- College of Pharmacy, Shenzhen Technology University, Shenzhen 518118, China; (X.J.); (J.S.); (Y.W.); (S.F.); (Z.S.); (Y.H.); (M.Y.); (R.H.)
| | - Yan Hu
- College of Pharmacy, Shenzhen Technology University, Shenzhen 518118, China; (X.J.); (J.S.); (Y.W.); (S.F.); (Z.S.); (Y.H.); (M.Y.); (R.H.)
| | - Mengxue Yu
- College of Pharmacy, Shenzhen Technology University, Shenzhen 518118, China; (X.J.); (J.S.); (Y.W.); (S.F.); (Z.S.); (Y.H.); (M.Y.); (R.H.)
| | - Rui Han
- College of Pharmacy, Shenzhen Technology University, Shenzhen 518118, China; (X.J.); (J.S.); (Y.W.); (S.F.); (Z.S.); (Y.H.); (M.Y.); (R.H.)
| | - Bin Zeng
- College of Pharmacy, Shenzhen Technology University, Shenzhen 518118, China; (X.J.); (J.S.); (Y.W.); (S.F.); (Z.S.); (Y.H.); (M.Y.); (R.H.)
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Qin X, Xu J, An X, Yang J, Wang Y, Dou M, Wang M, Huang J, Fu Y. Insight of endophytic fungi promoting the growth and development of woody plants. Crit Rev Biotechnol 2024; 44:78-99. [PMID: 36592988 DOI: 10.1080/07388551.2022.2129579] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Revised: 04/04/2022] [Accepted: 04/16/2022] [Indexed: 01/04/2023]
Abstract
Microorganisms play an important role in plant growth and development. In particular, endophytic fungi is one of the important kinds of microorganisms and has a mutually beneficial symbiotic relationship with host plants. Endophytic fungi have many substantial benefits to host plants, especially for woody plants, such as accelerating plant growth, enhancing stress resistance, promoting nutrient absorption, resisting pathogens and etc. However, the effects of endophytic fungi on the growth and development of woody plants have not been systematically summarized. In this review, the functions of endophytic fungi for the growth and development of woody plants have been mainly reviewed, including regulating plant growth (e.g., flowering, root elongation, etc.) by producing nutrients and plant hormones, and improving plant disease, insect resistance and heavy metal resistance by producing secondary metabolites. In addition, the diversity of endophytic fungi could improve the ability of woody plants to adapt to adverse environment. The components produced by endophytic fungi have excellent potential for the growth and development of woody plants. This review has systematically discussed the potential regulation mechanism of endophytic fungi regulating the growth and development of woody plants, it would be of great significance for the development and utilization of endophytic fungi resource from woody plants for the protection of forest resources.
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Affiliation(s)
- Xiangyu Qin
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin, PR China
- College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin, PR China
| | - Jian Xu
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin, PR China
- College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin, PR China
| | - Xiaoli An
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin, PR China
- College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin, PR China
| | - Jie Yang
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin, PR China
- College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin, PR China
| | - Yao Wang
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin, PR China
- College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin, PR China
| | - Meijia Dou
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin, PR China
- College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin, PR China
| | - Minggang Wang
- The College of Forestry, Beijing Forestry University, Beijing, PR China
| | - Jin Huang
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin, PR China
- College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin, PR China
| | - Yujie Fu
- The College of Forestry, Beijing Forestry University, Beijing, PR China
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Feng C, Zheng W, Han L, Wang JK, Zha XP, Xiao Q, He ZJ, Kang JC. AaLaeA targets AaFla1 to mediate the production of antitumor compound in Alternaria alstroemeria. J Basic Microbiol 2024; 64:68-80. [PMID: 37717245 DOI: 10.1002/jobm.202300319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Revised: 08/25/2023] [Accepted: 09/05/2023] [Indexed: 09/19/2023]
Abstract
Endophytic fungi are an important source of novel antitumor substances. Previously, we isolated an endophytic fungus, Alternaria alstroemeria, from the medicinal plant Artemisia artemisia, whose crude extracts strongly inhibited A549 tumor cells. We obtained a transformant, namely AaLaeAOE26 , which completely loses its antitumor activity due to overexpression of the global regulator AaLaeA. Re-sequencing analysis of the genome revealed that the insertion site was in the noncoding region and did not destroy any other genes. Metabolomics analysis revealed that the level of secondary antitumor metabolic substances was significantly lower in AaLaeAOE26 compared with the wild strain, in particular flavonoids were more downregulated according to the metabolomics analysis. A further comparative transcriptome analysis revealed that a gene encoding FAD-binding domain protein (Fla1) was significantly downregulated. On the other hand, overexpression of AaFla1 led to significant enhancement of antitumor activity against A549 with a sevenfold higher inhibition ratio than the wild strain. At the same time, we also found a significant increase in the accumulation of antitumor metabolites including quercetin, gitogenin, rhodioloside, liensinine, ginsenoside Rg2 and cinobufagin. Our data suggest that the global regulator AaLaeA negatively affects the production of antitumor compounds via controlling the transcription of AaFla1 in endophytic A. alstroemeria.
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Affiliation(s)
- Can Feng
- College of Pharmacy, Guizhou University, Guiyang, People's Republic of China
- Southwest Biomedical Resources of the Ministry of Education, Guizhou University, Guiyang, People's Republic of China
| | - Wen Zheng
- Southwest Biomedical Resources of the Ministry of Education, Guizhou University, Guiyang, People's Republic of China
| | - Long Han
- Southwest Biomedical Resources of the Ministry of Education, Guizhou University, Guiyang, People's Republic of China
| | - Jian-Kang Wang
- Southwest Biomedical Resources of the Ministry of Education, Guizhou University, Guiyang, People's Republic of China
| | - Xing-Ping Zha
- Southwest Biomedical Resources of the Ministry of Education, Guizhou University, Guiyang, People's Republic of China
| | - Qing Xiao
- Southwest Biomedical Resources of the Ministry of Education, Guizhou University, Guiyang, People's Republic of China
| | - Zhang-Jiang He
- College of Pharmacy, Guizhou University, Guiyang, People's Republic of China
- Southwest Biomedical Resources of the Ministry of Education, Guizhou University, Guiyang, People's Republic of China
| | - Ji-Chuan Kang
- College of Pharmacy, Guizhou University, Guiyang, People's Republic of China
- Southwest Biomedical Resources of the Ministry of Education, Guizhou University, Guiyang, People's Republic of China
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Ahmad N, Ritz M, Calchera A, Otte J, Schmitt I, Brueck T, Mehlmer N. Biosynthetic gene cluster synteny: Orthologous polyketide synthases in Hypogymnia physodes, Hypogymnia tubulosa, and Parmelia sulcata. Microbiologyopen 2023; 12:e1386. [PMID: 37877655 PMCID: PMC10582450 DOI: 10.1002/mbo3.1386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 09/15/2023] [Accepted: 09/26/2023] [Indexed: 10/26/2023] Open
Abstract
Lichens are symbiotic associations consisting of a photobiont (algae or cyanobacteria) and a mycobiont (fungus), which together generate a variety of unique secondary metabolites. To access this biosynthetic potential for biotechnological applications, deeper insights into the biosynthetic pathways and corresponding gene clusters are necessary. Here, we provide a comparative view of the biosynthetic gene clusters of three lichen mycobionts derived from Hypogymnia physodes, Hypogymnia tubulosa, and Parmelia sulcata. In addition, we present a high-quality PacBio metagenome of Parmelia sulcata, from which we extracted the mycobiont bin containing 214 biosynthetic gene clusters. Most biosynthetic gene clusters in these genomes were associated with T1PKSs, followed by NRPSs and terpenes. This study focused on biosynthetic gene clusters related to polyketide synthesis. Based on ketosynthase homology, we identified nine highly syntenic clusters present in all three species. Among the four clusters belonging to nonreducing PKSs, two are putatively linked to lichen substances derived from orsellinic acid (orcinol depsides and depsidones, e.g., lecanoric acid, physodic acid, lobaric acid), one to compounds derived from methylated forms of orsellinic acid (beta orcinol depsides, e.g., atranorin), and one to melanins. Five clusters with orthologs in all three species are linked to reducing PKSs. Our study contributes to sorting and dereplicating the vast PKS diversity found in lichenized fungi. High-quality sequences of biosynthetic gene clusters of these three common species provide a foundation for further exploration into biotechnological applications and the molecular evolution of lichen substances.
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Affiliation(s)
- Nadim Ahmad
- Department of Chemistry, Werner Siemens Chair of Synthetic Biotechnology, TUM School of Natural SciencesTechnical University of Munich (TUM)GarchingGermany
| | - Manfred Ritz
- Department of Chemistry, Werner Siemens Chair of Synthetic Biotechnology, TUM School of Natural SciencesTechnical University of Munich (TUM)GarchingGermany
| | - Anjuli Calchera
- Senckenberg Biodiversity and Climate Research Centre (SBiK‐F)Frankfurt am MainGermany
| | - Jürgen Otte
- Senckenberg Biodiversity and Climate Research Centre (SBiK‐F)Frankfurt am MainGermany
| | - Imke Schmitt
- Senckenberg Biodiversity and Climate Research Centre (SBiK‐F)Frankfurt am MainGermany
- Institute of Ecology, Evolution and DiversityGoethe University FrankfurtFrankfurt am MainGermany
| | - Thomas Brueck
- Department of Chemistry, Werner Siemens Chair of Synthetic Biotechnology, TUM School of Natural SciencesTechnical University of Munich (TUM)GarchingGermany
| | - Norbert Mehlmer
- Department of Chemistry, Werner Siemens Chair of Synthetic Biotechnology, TUM School of Natural SciencesTechnical University of Munich (TUM)GarchingGermany
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Schniertshauer D, Bergemann J. A Novel Method for Measuring Mitochondrial Respiratory Parameters in Wheat Paleae (Paleae Superior) Using the XF24 Analyzer. Bio Protoc 2023; 13:e4767. [PMID: 37575392 PMCID: PMC10415212 DOI: 10.21769/bioprotoc.4767] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Revised: 04/20/2023] [Accepted: 06/04/2023] [Indexed: 08/15/2023] Open
Abstract
Understanding the influence of secondary metabolites from fungi on the mitochondria of the host plant during infection is of great importance for the knowledge of fungus-plant interactions in general; it could help generate resistant plants in the future and in the development of specifically acting plant protection products. For this purpose, it must first be possible to record the mitochondrial parameters in the host plant. As of the date of this protocol, no measurements of mitochondrial respiration parameters have been performed in wheat paleae. The protocol shown here describes the measurements using the XF24 analyzer, which measures the rate of oxygen consumption in the sample by changes in the fluorescence of solid-state fluorophores. This procedure covers the preparation of samples for the XF24 analyzer and the measurement of mitochondrial parameters by adding specific mitochondrial inhibitors. It also shows the necessary approach and steps to be followed to obtain reliable, reproducible results. This is a robust protocol that allows the analysis of mitochondrial respiration directly in the wheat paleae. It demonstrates an important add-on method to existing screenings and also offers the possibility to test the effects of early infection of plants by harmful fungi (e.g., Fusarium graminearum) on mitochondrial respiration parameters. Key features This protocol offers the possibility of testing the effects of early infection of plants by pathogens on mitochondrial respiration parameters. This protocol requires a Seahorse XF24 Flux Analyzer with Islet Capture Microplates and the Seahorse Capture Screen Insert Tool. Graphical overview.
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Affiliation(s)
- Daniel Schniertshauer
- Department of Life Sciences, Albstadt-Sigmaringen University of Applied Sciences, Sigmaringen, Germany
| | - Jörg Bergemann
- Department of Life Sciences, Albstadt-Sigmaringen University of Applied Sciences, Sigmaringen, Germany
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Song LS, Huo J, Wan L, Pan L, Jiang N, Fu J, Wei S, He L. Differences and biocontrol potential of haustorial endophytic fungi from Taxillus Chinensis on different host plants. BMC Microbiol 2023; 23:128. [PMID: 37173641 PMCID: PMC10182615 DOI: 10.1186/s12866-023-02878-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 05/03/2023] [Indexed: 05/15/2023] Open
Abstract
BACKGROUND To explore the community composition and diversity of the endophytic fungi in Taxillus chinensis, samples of the parasites growing on seven different hosts, Morus alba, Prunus salicina, Phellodendron chinense, Bauhinia purpurea, Dalbergia odorifera, Diospyros kaki and Dimocarpus longan, were isolated. The strains were identified by their morphological characteristics and their internal transcribed spacer (ITS) sequences. RESULTS 150 different endophytic fungi were isolated from the haustorial roots of the seven hosts with a total isolation rate of 61.24%. These endophytic fungi were found to belong to 1 phylum, 2 classes, 7 orders, 9 families, 11 genera and 8 species. Among of them, Pestalotiopsis, Neopestalotiopsis and Diaporthe were the dominant genera, accounting for 26.67, 17.33 and 31.33% of the total number of strains, respectively. Diversity and similarity analyses showed that the endophytic fungi isolated from D. longan (H'=1.60) had the highest diversity index. The highest richness indexes were found in M. alba and D. odorifera (both 2.23). The evenness index of D. longan was the highest (0.82). The similarity coefficient of D. odorifera was the most similar to D. longan and M. alba (33.33%), while the similarity coefficient of P. chinense was the lowest (7.69%) with M. alba and D. odorifera. Nine strains showed antimicrobial activities. Among them, Pestalotiopsis sp., N. parvum and H. investiens showed significant antifungal activity against three fungal phytopathogens of medicinal plants. At the same time, the crude extracts from the metabolites of the three endophytic fungi had strong inhibitory effects on the three pathogens. Pestalotiopsis sp., N. parvum and H. investiens had the strongest inhibitory effects of S. cucurbitacearum, with inhibitory rates of 100%, 100% and 81.51%, respectively. In addition, N. parvum had a strong inhibitory effect on D. glomerata and C. cassicola, with inhibitory rates of 82.35% and 72.80%, respectively. CONCLUSIONS These results indicate that the species composition and diversity of endophytic fungi in the branches of T. chinensis were varied in the different hosts and showed good antimicrobial potential in the control of plant pathogens.
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Affiliation(s)
- Li-Sha Song
- Guangxi Botanical Garden of Medicinal Plants, Nanning, 530023, China
- Guangxi Key Laboratory for High-Quality Formation and Utilization of Dao-di Herbs, Nanning, China
| | - Juan Huo
- Guangxi Botanical Garden of Medicinal Plants, Nanning, 530023, China
- Guangxi Key Laboratory for High-Quality Formation and Utilization of Dao-di Herbs, Nanning, China
| | - Lingyun Wan
- Guangxi Botanical Garden of Medicinal Plants, Nanning, 530023, China
- Guangxi Key Laboratory for High-Quality Formation and Utilization of Dao-di Herbs, Nanning, China
| | - Limei Pan
- Guangxi Botanical Garden of Medicinal Plants, Nanning, 530023, China
- Guangxi Key Laboratory for High-Quality Formation and Utilization of Dao-di Herbs, Nanning, China
| | - Ni Jiang
- Guangxi Botanical Garden of Medicinal Plants, Nanning, 530023, China
- Guangxi Key Laboratory for High-Quality Formation and Utilization of Dao-di Herbs, Nanning, China
| | - Jine Fu
- Guangxi Botanical Garden of Medicinal Plants, Nanning, 530023, China
- Guangxi Key Laboratory for High-Quality Formation and Utilization of Dao-di Herbs, Nanning, China
| | - Shugen Wei
- Guangxi Botanical Garden of Medicinal Plants, Nanning, 530023, China.
- Guangxi Key Laboratory for High-Quality Formation and Utilization of Dao-di Herbs, Nanning, China.
| | - Lili He
- Guangxi Botanical Garden of Medicinal Plants, Nanning, 530023, China.
- Guangxi Key Laboratory for High-Quality Formation and Utilization of Dao-di Herbs, Nanning, China.
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Ahmad N, Ritz M, Calchera A, Otte J, Schmitt I, Brueck T, Mehlmer N. Biosynthetic Potential of Hypogymnia Holobionts: Insights into Secondary Metabolite Pathways. J Fungi (Basel) 2023; 9:546. [PMID: 37233257 PMCID: PMC10219277 DOI: 10.3390/jof9050546] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 04/21/2023] [Accepted: 04/25/2023] [Indexed: 05/27/2023] Open
Abstract
Lichens are symbiotic associations consisting of a photobiont (algae or cyanobacteria) and a mycobiont (fungus). They are known to produce a variety of unique secondary metabolites. To access this biosynthetic potential for biotechnological applications, deeper insights into the biosynthetic pathways and corresponding gene clusters are necessary. Here we provide a comprehensive view of the biosynthetic gene clusters of all organisms comprising a lichen thallus: fungi, green algae, and bacteria. We present two high-quality PacBio metagenomes, in which we identified a total of 460 biosynthetic gene clusters. Lichen mycobionts yielded 73-114 clusters, other lichen associated ascomycetes 8-40, green algae of the genus Trebouxia 14-19, and lichen-associated bacteria 101-105 clusters. The mycobionts contained mainly T1PKSs, followed by NRPSs, and terpenes; Trebouxia reads harbored mainly clusters linked to terpenes, followed by NRPSs and T3PKSs. Other lichen-associated ascomycetes and bacteria contained a mix of diverse biosynthetic gene clusters. In this study, we identified for the first time the biosynthetic gene clusters of entire lichen holobionts. The yet untapped biosynthetic potential of two species of the genus Hypogymnia is made accessible for further research.
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Affiliation(s)
- Nadim Ahmad
- Werner Siemens Chair of Synthetic Biotechnology, Department of Chemistry, Technical University of Munich (TUM), 85748 Garching, Germany
| | - Manfred Ritz
- Werner Siemens Chair of Synthetic Biotechnology, Department of Chemistry, Technical University of Munich (TUM), 85748 Garching, Germany
| | - Anjuli Calchera
- Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Senckenberganlage 25, 60325 Frankfurt am Main, Germany
| | - Jürgen Otte
- Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Senckenberganlage 25, 60325 Frankfurt am Main, Germany
| | - Imke Schmitt
- Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Senckenberganlage 25, 60325 Frankfurt am Main, Germany
- Institute of Ecology, Evolution and Diversity, Goethe University Frankfurt, Max-von-Laue-Straße 13, 60438 Frankfurt am Main, Germany
| | - Thomas Brueck
- Werner Siemens Chair of Synthetic Biotechnology, Department of Chemistry, Technical University of Munich (TUM), 85748 Garching, Germany
| | - Norbert Mehlmer
- Werner Siemens Chair of Synthetic Biotechnology, Department of Chemistry, Technical University of Munich (TUM), 85748 Garching, Germany
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Gasparek M, Steel H, Papachristodoulou A. Deciphering mechanisms of production of natural compounds using inducer-producer microbial consortia. Biotechnol Adv 2023; 64:108117. [PMID: 36813010 DOI: 10.1016/j.biotechadv.2023.108117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Revised: 02/03/2023] [Accepted: 02/06/2023] [Indexed: 02/22/2023]
Abstract
Living organisms produce a wide range of metabolites. Because of their potential antibacterial, antifungal, antiviral, or cytostatic properties, such natural molecules are of high interest to the pharmaceutical industry. In nature, these metabolites are often synthesized via secondary metabolic biosynthetic gene clusters that are silent under the typical culturing conditions. Among different techniques used to activate these silent gene clusters, co-culturing of "producer" species with specific "inducer" microbes is a particularly appealing approach due to its simplicity. Although several "inducer-producer" microbial consortia have been reported in the literature and hundreds of different secondary metabolites with attractive biopharmaceutical properties have been described as a result of co-cultivating inducer-producer consortia, less attention has been devoted to the understanding of the mechanisms and possible means of induction for production of secondary metabolites in co-cultures. This lack of understanding of fundamental biological functions and inter-species interactions significantly limits the diversity and yield of valuable compounds using biological engineering tools. In this review, we summarize and categorize the known physiological mechanisms of production of secondary metabolites in inducer-producer consortia, and then discuss approaches that could be exploited to optimize the discovery and production of secondary metabolites.
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Affiliation(s)
- Miroslav Gasparek
- Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, United Kingdom.
| | - Harrison Steel
- Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, United Kingdom
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11
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Mohamed NZ, Shaban L, Safan S, El-Sayed ASA. Physiological and metabolic traits of Taxol biosynthesis of endophytic fungi inhabiting plants: Plant-microbial crosstalk, and epigenetic regulators. Microbiol Res 2023; 272:127385. [PMID: 37141853 DOI: 10.1016/j.micres.2023.127385] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Revised: 04/08/2023] [Accepted: 04/09/2023] [Indexed: 05/06/2023]
Abstract
Attenuating the Taxol productivity of fungi with the subculturing and storage under axenic conditions is the challenge that halts the feasibility of fungi to be an industrial platform for Taxol production. This successive weakening of Taxol productivity by fungi could be attributed to the epigenetic down-regulation and molecular silencing of most of the gene clusters encoding Taxol biosynthetic enzymes. Thus, exploring the epigenetic regulating mechanisms controlling the molecular machinery of Taxol biosynthesis could be an alternative prospective technology to conquer the lower accessibility of Taxol by the potent fungi. The current review focuses on discussing the different molecular approaches, epigenetic regulators, transcriptional factors, metabolic manipulators, microbial communications and microbial cross-talking approaches on restoring and enhancing the Taxol biosynthetic potency of fungi to be industrial platform for Taxol production.
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Affiliation(s)
- Nabil Z Mohamed
- Enzymology and Fungal Biotechnology Lab, Botany and Microbiology Department, Faculty of Science, Zagazig University, Zagazig 44519, Egypt
| | - Lamis Shaban
- Enzymology and Fungal Biotechnology Lab, Botany and Microbiology Department, Faculty of Science, Zagazig University, Zagazig 44519, Egypt.
| | - Samia Safan
- Enzymology and Fungal Biotechnology Lab, Botany and Microbiology Department, Faculty of Science, Zagazig University, Zagazig 44519, Egypt
| | - Ashraf S A El-Sayed
- Enzymology and Fungal Biotechnology Lab, Botany and Microbiology Department, Faculty of Science, Zagazig University, Zagazig 44519, Egypt.
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12
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Atanasoff‐Kardjalieff AK, Seidl B, Steinert K, Daniliuc CG, Schuhmacher R, Humpf H, Kalinina S, Studt‐Reinhold L. Biosynthesis of the Isocoumarin Derivatives Fusamarins is Mediated by the PKS8 Gene Cluster in Fusarium. Chembiochem 2023; 24:e202200342. [PMID: 36137261 PMCID: PMC10947347 DOI: 10.1002/cbic.202200342] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 09/19/2022] [Indexed: 11/11/2022]
Abstract
Fusarium mangiferae causes the mango malformation disease (MMD) on young mango trees and seedlings resulting in economically significant crop losses. In addition, F. mangiferae produces a vast array of secondary metabolites (SMs), including mycotoxins that may contaminate the harvest. Their production is tightly regulated at the transcriptional level. Here, we show that lack of the H3 K9-specific histone methyltransferase, FmKmt1, influences the expression of the F. mangiferae polyketide synthase (PKS) 8 (FmPKS8), a so far cryptic PKS. By a combination of reverse genetics, untargeted metabolomics, bioinformatics and chemical analyses including structural elucidation, we determined the FmPKS8 biosynthetic gene cluster (BGC) and linked its activity to the production of fusamarins (FMN), which can be structurally classified as dihydroisocoumarins. Functional characterization of the four FMN cluster genes shed light on the biosynthetic pathway. Cytotoxicity assays revealed moderate toxicities with IC50 values between 1 and 50 μM depending on the compound.
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Affiliation(s)
- Anna K. Atanasoff‐Kardjalieff
- Institute of Microbial GeneticsDepartment of Applied Genetics and Cell BiologyUniversity of Natural Resources and Life SciencesViennaKonrad-Lorenz Strasse 243430Tulln an der DonauAustria
| | - Bernhard Seidl
- Institute of Bioanalytics and Agro-MetabolomicsDepartment of Agrobiotechnology (IFA-Tulln)University of Natural Resources and Life SciencesViennaKonrad-Lorenz Strasse 203430Tulln an der DonauAustria
| | - Katharina Steinert
- Institute of Food ChemistryWestfälische Wilhelms-Universität MünsterCorrensstraße 4548149MünsterGermany
| | - Constantin G. Daniliuc
- Organisch-Chemisches InstitutWestfälische Wilhelms-Universität MünsterCorrensstraße 4048149MünsterGermany
| | - Rainer Schuhmacher
- Institute of Bioanalytics and Agro-MetabolomicsDepartment of Agrobiotechnology (IFA-Tulln)University of Natural Resources and Life SciencesViennaKonrad-Lorenz Strasse 203430Tulln an der DonauAustria
| | - Hans‐Ulrich Humpf
- Institute of Food ChemistryWestfälische Wilhelms-Universität MünsterCorrensstraße 4548149MünsterGermany
| | - Svetlana Kalinina
- Institute of Food ChemistryWestfälische Wilhelms-Universität MünsterCorrensstraße 4548149MünsterGermany
| | - Lena Studt‐Reinhold
- Institute of Microbial GeneticsDepartment of Applied Genetics and Cell BiologyUniversity of Natural Resources and Life SciencesViennaKonrad-Lorenz Strasse 243430Tulln an der DonauAustria
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13
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Abramczyk B, Pecio Ł, Kozachok S, Kowalczyk M, Marzec-Grządziel A, Król E, Gałązka A, Oleszek W. Pioneering Metabolomic Studies on Diaporthe eres Species Complex from Fruit Trees in the South-Eastern Poland. Molecules 2023; 28:molecules28031175. [PMID: 36770841 PMCID: PMC9920373 DOI: 10.3390/molecules28031175] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 01/19/2023] [Accepted: 01/22/2023] [Indexed: 01/26/2023] Open
Abstract
Fungi from the genus Diaporthe have been reported as plant pathogens, endophytes, and saprophytes on a wide range of host plants worldwide. Their precise identification is problematic since many Diaporthe species can colonize a single host plant, whereas the same Diaporthe species can inhabit many hosts. Recently, Diaporthe has been proven to be a rich source of bioactive secondary metabolites. In our initial study, 40 Diaporthe isolates were analyzed for their metabolite production. A total of 153 compounds were identified based on their spectroscopic properties-Ultraviolet-visible and mass spectrometry. From these, 43 fungal metabolites were recognized as potential chemotaxonomic markers, mostly belonging to the drimane sesquiterpenoid-phthalide hybrid class. This group included mainly phytotoxic compounds such as cyclopaldic acid, altiloxin A, B, and their derivatives. To the best of our knowledge, this is the first report on the metabolomic studies on Diaporthe eres species complex from fruit trees in the South-Eastern Poland. The results from our study may provide the basis for the future research on the isolation of identified metabolites and on their bioactive potential for agricultural applications as biopesticides or biofertilizers.
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Affiliation(s)
- Barbara Abramczyk
- Department of Agricultural Microbiology, Institute of Soil Science and Plant Cultivation—State Research Institute, Czartoryskich 8, 24-100 Puławy, Poland
- Correspondence:
| | - Łukasz Pecio
- Department of Biochemistry and Crop Quality, Institute of Soil Science and Plant Cultivation—State Research Institute, Czartoryskich 8, 24-100 Puławy, Poland
- Department of Natural Products Chemistry, Medical University of Lublin, 20-093 Lublin, Poland
| | - Solomiia Kozachok
- Department of Biochemistry and Crop Quality, Institute of Soil Science and Plant Cultivation—State Research Institute, Czartoryskich 8, 24-100 Puławy, Poland
| | - Mariusz Kowalczyk
- Department of Biochemistry and Crop Quality, Institute of Soil Science and Plant Cultivation—State Research Institute, Czartoryskich 8, 24-100 Puławy, Poland
| | - Anna Marzec-Grządziel
- Department of Agricultural Microbiology, Institute of Soil Science and Plant Cultivation—State Research Institute, Czartoryskich 8, 24-100 Puławy, Poland
| | - Ewa Król
- Department of Plant Protection, University of Life Sciences in Lublin, Leszczyńskiego 7, 20-069 Lublin, Poland
| | - Anna Gałązka
- Department of Agricultural Microbiology, Institute of Soil Science and Plant Cultivation—State Research Institute, Czartoryskich 8, 24-100 Puławy, Poland
| | - Wiesław Oleszek
- Department of Biochemistry and Crop Quality, Institute of Soil Science and Plant Cultivation—State Research Institute, Czartoryskich 8, 24-100 Puławy, Poland
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Gab-Allah MA, Choi K, Kim B. Type B Trichothecenes in Cereal Grains and Their Products: Recent Advances on Occurrence, Toxicology, Analysis and Post-Harvest Decontamination Strategies. Toxins (Basel) 2023; 15:85. [PMID: 36828399 PMCID: PMC9963506 DOI: 10.3390/toxins15020085] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 01/11/2023] [Accepted: 01/12/2023] [Indexed: 01/19/2023] Open
Abstract
Type B trichothecenes (deoxynivalenol, nivalenol, 3-acetyldeoxynivalenol, 15-acetyldeoxynivalenol) and deoxynivalenol-3-glucoside (DON-3G) are secondary toxic metabolites produced mainly by mycotoxigenic Fusarium fungi and have been recognized as natural contaminants in cereals and cereal-based foods. The latest studies have proven the various negative effects of type B trichothecenes on human health. Due to the widespread occurrence of Fusarium species, contamination by these mycotoxins has become an important aspect for public health and agro-food systems worldwide. Hence, their monitoring and surveillance in various foods have received a significant deal of attention in recent years. In this review, an up-to-date overview of the occurrence profile of major type B trichothecenes and DON-3G in cereal grains and their toxicological implications are outlined. Furthermore, current trends in analytical methodologies for their determination are overviewed. This review also covers the factors affecting the production of these mycotoxins, as well as the management strategies currently employed to mitigate their contamination in foods. Information presented in this review provides good insight into the progress that has been achieved in the last years for monitoring type B trichothecenes and DON-3G, and also would help the researchers in their further investigations on metabolic pathway analysis and toxicological studies of these Fusarium mycotoxins.
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Affiliation(s)
- Mohamed A. Gab-Allah
- Organic Metrology Group, Division of Chemical and Biological Metrology, Korea Research Institute of Standards and Science, Daejeon 34113, Republic of Korea
- Department of Bio-Analytical Science, University of Science and Technology, Daejeon 34113, Republic of Korea
- Reference Materials Lab, National Institute of Standards, P.O. Box 136, Giza 12211, Egypt
| | - Kihwan Choi
- Organic Metrology Group, Division of Chemical and Biological Metrology, Korea Research Institute of Standards and Science, Daejeon 34113, Republic of Korea
- Graduate School of Analytical Science and Technology, Chungnam National University, Daejeon 34134, Republic of Korea
| | - Byungjoo Kim
- Organic Metrology Group, Division of Chemical and Biological Metrology, Korea Research Institute of Standards and Science, Daejeon 34113, Republic of Korea
- Department of Bio-Analytical Science, University of Science and Technology, Daejeon 34113, Republic of Korea
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15
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Castell A, Arroyo-Manzanares N, Campillo N, Torres C, Fenoll J, Viñas P. Bioaccumulation of mycotoxins in human forensic liver and animal liver samples using a green sample treatment. Microchem J 2022. [DOI: 10.1016/j.microc.2022.108192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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16
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Yin X, Han L, Zheng W, Cai L, Qin M, He Z, Kang J. Global regulatory factor AaLaeA upregulates the production of antitumor substances in the endophytic fungus Alternaria alstroemeria. J Basic Microbiol 2022; 62:1402-1414. [PMID: 36041052 DOI: 10.1002/jobm.202200391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Revised: 07/30/2022] [Accepted: 08/11/2022] [Indexed: 11/08/2022]
Abstract
The global regulatory factor LaeA has been shown to be involved in the biosynthesis of secondary metabolites in various fungi. In a previous work, we isolated an endophytic fungus from Artemisia annua, and its extract had a significant inhibitory effect on the A549 cancer cell line. Phylogenetic analysis further identified the strain as Alternaria alstroemeria. Overexpression of AalaeA gene resulted in significantly increased antitumor activity of this strain's extract. The 3-(4, 5- dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide assay results showed that the inhibition rate of the AalaeAOE29 mutant extract on A549 cancer cells was significantly higher than that of the WT extract, as the IC50 decreased from 195.0 to 107.4 μg/ml, and the total apoptosis rate was enhanced. Overexpression of the AalaeA gene significantly increased the contents of myricetin, geraniol, ergosterol, and 18 other antitumor compounds as determined by metabolomic analysis. Transcriptomic analysis revealed significant changes in 95 genes in the mutant strain, including polyketide synthases, nonribosomal peptide synthases, cytochrome P450s, glycosyltransferases, acetyl-CoA acetyltransferases, and others. These results suggested that AaLaeA mediated the antitumor activity of the metabolites in A. alstroemeria by regulating multiple metabolic pathways.
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Affiliation(s)
- Xuemin Yin
- College of Pharmacy, Guizhou University, Guiyang, The People's Republic of China.,Southwest Biomedical Resources of the Ministry of Education, Guizhou University, Guiyang, The People's Republic of China
| | - Long Han
- College of Pharmacy, Guizhou University, Guiyang, The People's Republic of China.,Southwest Biomedical Resources of the Ministry of Education, Guizhou University, Guiyang, The People's Republic of China
| | - Wen Zheng
- College of Pharmacy, Guizhou University, Guiyang, The People's Republic of China.,Southwest Biomedical Resources of the Ministry of Education, Guizhou University, Guiyang, The People's Republic of China
| | - Lu Cai
- College of Pharmacy, Guizhou University, Guiyang, The People's Republic of China.,Southwest Biomedical Resources of the Ministry of Education, Guizhou University, Guiyang, The People's Republic of China
| | - Min Qin
- College of Pharmacy, Guizhou University, Guiyang, The People's Republic of China.,Southwest Biomedical Resources of the Ministry of Education, Guizhou University, Guiyang, The People's Republic of China
| | - Zhangjiang He
- College of Pharmacy, Guizhou University, Guiyang, The People's Republic of China.,Southwest Biomedical Resources of the Ministry of Education, Guizhou University, Guiyang, The People's Republic of China
| | - Jichuan Kang
- College of Pharmacy, Guizhou University, Guiyang, The People's Republic of China.,Southwest Biomedical Resources of the Ministry of Education, Guizhou University, Guiyang, The People's Republic of China
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17
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Yuan XY, Li JY, Zhi QQ, Chi SD, Qu S, Luo YF, He ZM. SfgA Renders Aspergillus flavus More Stable to the External Environment. J Fungi (Basel) 2022; 8:jof8060638. [PMID: 35736121 PMCID: PMC9224668 DOI: 10.3390/jof8060638] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2022] [Revised: 06/07/2022] [Accepted: 06/08/2022] [Indexed: 02/04/2023] Open
Abstract
sfgA is known as a key negative transcriptional regulator gene of asexual sporulation and sterigmatocystin production in Aspergillus nidulans. However, here, we found that the homolog sfgA gene shows a broad and complex regulatory role in governing growth, conidiation, sclerotia formation, secondary metabolism, and environmental stress responses in Aspergillus flavus. When sfgA was deleted in A. flavus, the fungal growth was slowed, but the conidiation was significantly increased, and the sclerotia formation displayed different behavior at different temperatures, which increased at 30 °C but decreased at 36 °C. In addition, sfgA regulated aflatoxin biosynthesis in a complex way that was associated with the changes in cultured conditions, and the increased production of aflatoxin in the ∆sfgA mutant was associated with a decrease in sclerotia size. Furthermore, the ∆sfgA mutant exhibited sensitivity to osmotic, oxidative, and cell wall stresses but still produced dense conidia. Transcriptome data indicated that numerous development- and secondary-metabolism-related genes were expressed differently when sfgA was deleted. Additionally, we also found that sfgA functions downstream of fluG in A. flavus, which is consistent with the genetic position in FluG-mediated conidiation in A. nidulans. Collectively, sfgA plays a critical role in the development, secondary metabolism, and stress responses of A. flavus, and sfgA renders A. flavus more stable to the external environment.
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Affiliation(s)
- Xiao-Yu Yuan
- The Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Science, Sun Yat-sen University, Guangzhou 510275, China; (X.-Y.Y.); (J.-Y.L.); (Q.-Q.Z.); (S.-D.C.); (S.Q.)
| | - Jie-Ying Li
- The Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Science, Sun Yat-sen University, Guangzhou 510275, China; (X.-Y.Y.); (J.-Y.L.); (Q.-Q.Z.); (S.-D.C.); (S.Q.)
| | - Qing-Qing Zhi
- The Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Science, Sun Yat-sen University, Guangzhou 510275, China; (X.-Y.Y.); (J.-Y.L.); (Q.-Q.Z.); (S.-D.C.); (S.Q.)
- College of Agriculture and Biology, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, China
| | - Sheng-Da Chi
- The Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Science, Sun Yat-sen University, Guangzhou 510275, China; (X.-Y.Y.); (J.-Y.L.); (Q.-Q.Z.); (S.-D.C.); (S.Q.)
| | - Su Qu
- The Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Science, Sun Yat-sen University, Guangzhou 510275, China; (X.-Y.Y.); (J.-Y.L.); (Q.-Q.Z.); (S.-D.C.); (S.Q.)
| | - Yan-Feng Luo
- Guangdong Jinyinshan Environmental Protection Technology Co., Ltd., Guangzhou 510705, China;
| | - Zhu-Mei He
- The Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Science, Sun Yat-sen University, Guangzhou 510275, China; (X.-Y.Y.); (J.-Y.L.); (Q.-Q.Z.); (S.-D.C.); (S.Q.)
- Correspondence:
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18
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Sedaghatjoo S, Mishra B, Forster MK, Becker Y, Keilwagen J, Killermann B, Thines M, Karlovsky P, Maier W. Comparative genomics reveals low levels of inter- and intraspecies diversity in the causal agents of dwarf and common bunt of wheat and hint at conspecificity of Tilletia caries and T. laevis. IMA Fungus 2022; 13:11. [PMID: 35672841 PMCID: PMC9172201 DOI: 10.1186/s43008-022-00098-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Accepted: 05/27/2022] [Indexed: 11/10/2022] Open
Abstract
AbstractTilletia caries and T. laevis, which are the causal agents of common bunt, as well as T. controversa, which causes dwarf bunt of wheat, threaten especially organic wheat farming. The three closely related fungal species differ in their teliospore morphology and partially in their physiology and infection biology. The gene content as well as intraspecies variation in these species and the genetic basis of their separation is unknown. We sequenced the genome of four T. caries, five T. controversa, and two T. laevis and extended this dataset with five publicly available ones. The genomes of the three species displayed microsynteny with up to 94.3% pairwise aligned regions excluding repetitive regions. The majority of functionally characterized genes involved in pathogenicity, life cycle, and infection of corn smut, Ustilago maydis, were found to be absent or poorly conserved in the draft genomes and the biosynthetic pathway for trimethylamine in Tilletia spp. could be different from bacteria. Overall, 75% of the identified protein-coding genes comprising 84% of the total predicted carbohydrate utilizing enzymes, 72.5% putatively secreted proteins, and 47.4% of effector-like proteins were conserved and shared across all 16 isolates. We predicted nine highly identical secondary metabolite biosynthesis gene clusters comprising in total 62 genes in all species and none were species-specific. Less than 0.1% of the protein-coding genes were species-specific and their function remained mostly unknown. Tilletia controversa had the highest intraspecies genetic variation, followed by T. caries and the lowest in T. laevis. Although the genomes of the three species are very similar, employing 241 single copy genes T. controversa was phylogenetically distinct from T. caries and T. laevis, however these two could not be resolved as individual monophyletic groups. This was in line with the genome-wide number of single nucleotide polymorphisms and small insertions and deletions. Despite the conspicuously different teliospore ornamentation of T. caries and T. laevis, a high degree of genomic identity and scarcity of species-specific genes indicate that the two species could be conspecific.
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19
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Qin M, Li Y, Cai L, Yin X, He Z, Kang J. Overexpression of the global regulator FnVeA up-regulates antitumor substances in endophytic Fusarium nematophilum. Can J Microbiol 2022; 68:531-541. [PMID: 35649283 DOI: 10.1139/cjm-2022-0067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The special niche of endophytic fungi promotes their potential to produce antitumor compounds with novel structure and significant bio-activity for screening of new antitumor drugs. In our previous studies, we isolated a Fusarium strain from the roots of the medicinal plant Nothapodytes pittosporoides and identified it as Fusarium nematophilum. We found that the crude extract of F. nematophilum had significant anti-tumor activity, and overexpressing the global regulatory factor FnVeA resulted in a significant increase in the anti-tumor activity, which was approximately 5-fold higher than wild strain for relative inhibition rate. In FnVeAOE, the accumulation of indole, alkene, alkaloid, steroid and flavonoid metabolites with potential anti-tumor activity were significantly up-regulated as compared with WT via metabolomic analysis. Moreover, the transcriptome analysis showed that 134 differential genes were considered to be closely related to the biosynthesis of anti-tumor substances, of which 59 differential genes were considered as candidate key genes, and related to tryptophan dimethylallyltransferase, cytochrome P450 monooxygenase, polyketide synthases and transcription factor. Taken together, we suggest that FnVeA may regulate the biosynthesis of anti-tumor substances by mediating the expression of genes related to secondary metabolic pathways in F. nematophilum. Key words: Endophytic Fusarium nematophilum; global regulator VeA; anti-tumor; metabolome; transcriptome.
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Affiliation(s)
- Min Qin
- Guizhou University, 71206, Guiyang, Guizhou, China;
| | - Yongjie Li
- Guizhou University, 71206, Guiyang, Guizhou, China;
| | - Lu Cai
- Guizhou University, 71206, Guiyang, Guizhou, China;
| | - Xuemin Yin
- Guizhou University, 71206, Guiyang, Guizhou, China;
| | | | - Jichuan Kang
- Guizhou University, 71206, Guiyang, Guizhou, China;
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20
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Pillay LC, Nekati L, Makhwitine PJ, Ndlovu SI. Epigenetic Activation of Silent Biosynthetic Gene Clusters in Endophytic Fungi Using Small Molecular Modifiers. Front Microbiol 2022; 13:815008. [PMID: 35237247 PMCID: PMC8882859 DOI: 10.3389/fmicb.2022.815008] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2021] [Accepted: 01/19/2022] [Indexed: 11/29/2022] Open
Abstract
The discovery of silent biosynthetic gene clusters (BGCs) in fungi provides unlimited prospects to harness the secondary metabolites encoded by gene clusters for various applications, including pharmaceuticals. Amplifying these prospects is the new interest in exploring fungi living in the extremes, such as those associated with plants (fungal endophytes). Fungal species in endosymbiosis relationship with plants are recognized as the future factories of clinically relevant agents since discovering that they can produce similar metabolites as their plant host. The endophytes produce these compounds in natural environments as a defense mechanism against pathogens that infect the plant host or as a strategy for mitigating competitors. The signaling cascades leading to the expression of silent biosynthetic gene clusters in the natural environment remain unknown. Lack of knowledge on regulatory circuits of biosynthetic gene clusters limits the ability to exploit them in the laboratory. They are often silent and require tailor-designed strategies for activation. Epigenetic modification using small molecular compounds that alter the chromatin network, leading to the changes in secondary metabolites profile, has achieved considerable success. This review aims to comprehensively analyze the secondary metabolite profiles expressed after treatment with various epigenetic modifiers. We first describe the regulatory circuits governing the expression of secondary metabolites in fungi. Following this, we provide a detailed review of the small molecular modifiers, their mechanism(s) of action, and the diverse chemistries resulting from epigenetic modification. We further show that genetic deletion or epigenetic inhibition of histone deacetylases does not always lead to the overexpression or induction of silent secondary metabolites. Instead, the response is more complex and often leads to differential expression of secondary metabolites. Finally, we propose using this strategy as an initial screening tool to dereplicate promising fungal species.
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Affiliation(s)
| | | | | | - Sizwe I. Ndlovu
- Discipline of Medical Microbiology, School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa
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21
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Relation of shear stress and KLa on bikaverin production by Fusarium oxysporum CCT7620 in a bioreactor. Bioprocess Biosyst Eng 2022; 45:733-740. [DOI: 10.1007/s00449-022-02693-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Accepted: 01/13/2022] [Indexed: 11/02/2022]
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22
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Yan Y, Xiang B, Xie Q, Lin Y, Shen G, Hao X, Zhu X. A Putative C 2H 2 Transcription Factor CgTF6, Controlled by CgTF1, Negatively Regulates Chaetoglobosin A Biosynthesis in Chaetomium globosum. FRONTIERS IN FUNGAL BIOLOGY 2021; 2:756104. [PMID: 37744158 PMCID: PMC10512409 DOI: 10.3389/ffunb.2021.756104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Accepted: 09/22/2021] [Indexed: 09/26/2023]
Abstract
Gα signaling pathway as well as the global regulator LaeA were demonstrated to positively regulate the biosynthesis of chaetoglobosin A (ChA), a promising biotic pesticide produced by Chaetomium globosum. Recently, the regulatory function of Zn2Cys6 binuclear finger transcription factor CgcheR that lies within the ChA biosynthesis gene cluster has been confirmed. However, CgcheR was not merely a pathway specific regulator. In this study, we showed that the homologs gene of CgcheR (designated as Cgtf1) regulate ChA biosynthesis and sporulation in C. globosum NK102. More importantly, RNA-seq profiling demonstrated that 1,388 genes were significant differentially expressed as Cgtf1 deleted. Among them, a putative C2H2 transcription factor, named Cgtf6, showed the highest gene expression variation in zinc-binding proteins encoding genes as Cgtf1 deleted. qRT-PCR analysis confirmed that expression of Cgtf6 was significantly reduced in CgTF1 null mutants. Whereas, deletion of Cgtf6 resulted in the transcriptional activation and consequent increase in the expression of ChA biosynthesis gene cluster and ChA production in C. globosum. These data suggested that CgTF6 probably acted as an end product feedback effector, and interacted with CgTF1 to maintain a tolerable concentration of ChA for cell survival.
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Affiliation(s)
- Yu Yan
- Beijing Key Laboratory of Genetic Engineering Drug and Biotechnology, College of Life Sciences, Beijing Normal University, Beijing, China
| | - Biyun Xiang
- Beijing Key Laboratory of Genetic Engineering Drug and Biotechnology, College of Life Sciences, Beijing Normal University, Beijing, China
| | - Qiaohong Xie
- Beijing Key Laboratory of Genetic Engineering Drug and Biotechnology, College of Life Sciences, Beijing Normal University, Beijing, China
- Xiamen No. 1 High School of Fujian, Xiamen, China
| | - Yamin Lin
- Beijing Key Laboratory of Genetic Engineering Drug and Biotechnology, College of Life Sciences, Beijing Normal University, Beijing, China
- Shenzhen Senior High School Group, Shenzhen, China
| | - Guangya Shen
- Beijing Key Laboratory of Genetic Engineering Drug and Biotechnology, College of Life Sciences, Beijing Normal University, Beijing, China
| | - Xiaoran Hao
- National Experimental Teaching Demonstrating Center, College of Life Sciences, Beijing Normal University, Beijing, China
| | - Xudong Zhu
- Beijing Key Laboratory of Genetic Engineering Drug and Biotechnology, College of Life Sciences, Beijing Normal University, Beijing, China
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23
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Rai N, Kumari Keshri P, Verma A, Kamble SC, Mishra P, Barik S, Kumar Singh S, Gautam V. Plant associated fungal endophytes as a source of natural bioactive compounds. Mycology 2021; 12:139-159. [PMID: 34552808 PMCID: PMC8451683 DOI: 10.1080/21501203.2020.1870579] [Citation(s) in RCA: 46] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
Endophytes are a potent source of bioactive compounds that mimic plant-based metabolites. The relationship of host plant and endophyte is significantly associated with alteration in fungal colonisation and the extraction of endophyte-derived bioactive compounds. Screening of fungal endophytes and their relationship with host plants is essential for the isolation of bioactive compounds. Numerous bioactive compounds with antioxidant, antimicrobial, anticancer, and immunomodulatory properties are known to be derived from fungal endophytes. Bioinformatics tools along with the latest techniques such as metabolomics, next-generation sequencing, and metagenomics multilocus sequence typing can potentially fill the gaps in fungal endophyte research. The current review article focuses on bioactive compounds derived from plant-associated fungal endophytes and their pharmacological importance. We conclude with the challenges and opportunities in the research area of fungal endophytes.
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Affiliation(s)
- Nilesh Rai
- Centre of Experimental Medicine and Surgery, Institute of Medical Sciences, Banaras Hindu University, Varanasi, India
| | - Priyanka Kumari Keshri
- Centre of Experimental Medicine and Surgery, Institute of Medical Sciences, Banaras Hindu University, Varanasi, India
| | - Ashish Verma
- Centre of Experimental Medicine and Surgery, Institute of Medical Sciences, Banaras Hindu University, Varanasi, India
| | - Swapnil C Kamble
- Department of Technology, Savitribai Phule Pune University, Ganeshkhind, Pune, India
| | - Pradeep Mishra
- Division of Biochemistry, Department of Medical Biochemistry and Biophysics, Karolinska Institute, Stockholm, Sweden
| | - Suvakanta Barik
- Chemical Engineering Discipline, Indian Institute of Technology Gandhinagar, Palaj, Gandhinagar, Gujarat, India
| | - Santosh Kumar Singh
- Centre of Experimental Medicine and Surgery, Institute of Medical Sciences, Banaras Hindu University, Varanasi, India
| | - Vibhav Gautam
- Centre of Experimental Medicine and Surgery, Institute of Medical Sciences, Banaras Hindu University, Varanasi, India
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24
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Exploring Endophytes Using “Omics”: An Approach for Sustainable Production of Bioactive Metabolites. Fungal Biol 2021. [DOI: 10.1007/978-3-030-54422-5_15] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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25
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Alam B, Lǐ J, Gě Q, Khan MA, Gōng J, Mehmood S, Yuán Y, Gǒng W. Endophytic Fungi: From Symbiosis to Secondary Metabolite Communications or Vice Versa? FRONTIERS IN PLANT SCIENCE 2021; 12:791033. [PMID: 34975976 PMCID: PMC8718612 DOI: 10.3389/fpls.2021.791033] [Citation(s) in RCA: 54] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Accepted: 11/29/2021] [Indexed: 05/08/2023]
Abstract
Endophytic fungi (EF) are a group of fascinating host-associated fungal communities that colonize the intercellular or intracellular spaces of host tissues, providing beneficial effects to their hosts while gaining advantages. In recent decades, accumulated research on endophytic fungi has revealed their biodiversity, wide-ranging ecological distribution, and multidimensional interactions with host plants and other microbiomes in the symbiotic continuum. In this review, we highlight the role of secondary metabolites (SMs) as effectors in these multidimensional interactions, and the biosynthesis of SMs in symbiosis via complex gene expression regulation mechanisms in the symbiotic continuum and via the mimicry or alteration of phytochemical production in host plants. Alternative biological applications of SMs in modern medicine, agriculture, and industry and their major classes are also discussed. This review recapitulates an introduction to the research background, progress, and prospects of endophytic biology, and discusses problems and substantive challenges that need further study.
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Affiliation(s)
- Beena Alam
- State Key Laboratory of Cotton Biology, Key Laboratory of Biological and Genetic Breeding of Cotton, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
| | - Jùnwén Lǐ
- State Key Laboratory of Cotton Biology, Key Laboratory of Biological and Genetic Breeding of Cotton, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
| | - Qún Gě
- State Key Laboratory of Cotton Biology, Key Laboratory of Biological and Genetic Breeding of Cotton, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
| | - Mueen Alam Khan
- Department of Plant Breeding & Genetics, University College of Agriculture and Environmental Sciences, The Islamia University of Bahawalpur (IUB), Bahawalpur, Pakistan
| | - Jǔwǔ Gōng
- State Key Laboratory of Cotton Biology, Key Laboratory of Biological and Genetic Breeding of Cotton, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
| | - Shahid Mehmood
- Biotechnology Research Institute (BRI), Chinese Academy of Agricultural Sciences, Beijing, China
| | - Yǒulù Yuán
- State Key Laboratory of Cotton Biology, Key Laboratory of Biological and Genetic Breeding of Cotton, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
- *Correspondence: Wànkuí Gǒng,
| | - Wànkuí Gǒng
- State Key Laboratory of Cotton Biology, Key Laboratory of Biological and Genetic Breeding of Cotton, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
- Yǒulù Yuán,
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26
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Bioprospecting for Biomolecules from Different Fungal Communities: An Introduction. Fungal Biol 2021. [DOI: 10.1007/978-3-030-85603-8_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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27
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Cheng M, Zhao S, Lin C, Song J, Yang Q. Requirement of LaeA for sporulation, pigmentation and secondary metabolism in Chaetomium globosum. Fungal Biol 2020; 125:305-315. [PMID: 33766309 DOI: 10.1016/j.funbio.2020.11.008] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Revised: 10/22/2020] [Accepted: 11/24/2020] [Indexed: 10/22/2022]
Abstract
The global regulator LaeA has been confirmed to govern the production of secondary metabolites in fungi. Herein, we examined the role of LaeA in Chaetomium globosum. Similarly as observed in other filamentous, CgLaeA had a significant effect on the secondary metabolism. The ΔCglaeA mutant strain did not exhibit chaetoglobosin A, whereas its production was restored in the CglaeAC strain. In addition, CglaeA overexpression led to an increase in chaetoglobosin A production. Transcriptional examination of the mutants indicated that CgLaeA positively regulated the expression of pathway-specific transcription factor CgcheR, while another global regulator CgvelB was negatively regulated by CgLaeA. Furthermore, CgLaeA also affected the morphological phenotypes of fungi. The ΔCglaeA mutant strains exhibited decreased sporulation and pigmentation compared with the wild-type strain, whereas the phenotypes were restored in the CglaeAC strain. Moreover, OE::CglaeA exhibited increased levels of sporulation and pigmentation. Moreover, inhibition activity against phytopathogenic fungi affected by decreased mycotoxin production of the ΔCglaeA mutant strain.
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Affiliation(s)
- Ming Cheng
- School of Life Sciences and Technology, Harbin Institute of Technology, Harbin, 150000, China
| | - Shanshan Zhao
- School of Life Sciences and Technology, Harbin Institute of Technology, Harbin, 150000, China
| | - Congyu Lin
- School of Life Sciences and Technology, Harbin Institute of Technology, Harbin, 150000, China
| | - Jinzhu Song
- School of Life Sciences and Technology, Harbin Institute of Technology, Harbin, 150000, China
| | - Qian Yang
- School of Life Sciences and Technology, Harbin Institute of Technology, Harbin, 150000, China.
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28
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Jun SC, Kim JH, Han KH. The Conserved MAP Kinase MpkB Regulates Development and Sporulation without Affecting Aflatoxin Biosynthesis in Aspergillus flavus. J Fungi (Basel) 2020; 6:jof6040289. [PMID: 33207581 PMCID: PMC7711526 DOI: 10.3390/jof6040289] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Revised: 11/12/2020] [Accepted: 11/13/2020] [Indexed: 12/20/2022] Open
Abstract
In eukaryotes, the MAP kinase signaling pathway plays pivotal roles in regulating the expression of genes required for growth, development, and stress response. Here, we deleted the mpkB gene (AFLA_034170), an ortholog of the Saccharomyces cerevisiae FUS3 gene, to characterize its function in Aspergillus flavus, a cosmopolitan, pathogenic, and aflatoxin-producing fungus. Previous studies revealed that MpkB positively regulates sexual and asexual differentiation in Aspergillus nidulans. In A. flavus, mpkB deletion resulted in an approximately 60% reduction in conidia production compared to the wild type without mycelial growth defects. Moreover, the mutant produced immature and abnormal conidiophores exhibiting vesicular dome-immaturity in the conidiophore head, decreased phialide numbers, and very short stalks. Interestingly, the ΔmpkB mutant could not produce sclerotia but produced aflatoxin B1 normally. Taken together, these results suggest that the A. flavus MpkB MAP kinase positively regulates conidiation and sclerotia formation but is not involved in the production of secondary metabolites such as aflatoxin B1.
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Affiliation(s)
| | - Jong-Hwa Kim
- Correspondence: (J.-H.K.); (K.-H.H.); Tel.: +82-63-290-1439 (J.-H.K.); +82-63-290-1427 (K.-H.H.)
| | - Kap-Hoon Han
- Correspondence: (J.-H.K.); (K.-H.H.); Tel.: +82-63-290-1439 (J.-H.K.); +82-63-290-1427 (K.-H.H.)
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29
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Comparative Genomics Analyses of Lifestyle Transitions at the Origin of an Invasive Fungal Pathogen in the Genus Cryphonectria. mSphere 2020; 5:5/5/e00737-20. [PMID: 33055257 PMCID: PMC7565894 DOI: 10.1128/msphere.00737-20] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
Forest and agroecosystems, as well as animal and human health, are threatened by emerging pathogens. Following decimation of chestnuts in the United States, the fungal pathogen Cryphonectria parasitica colonized Europe. After establishment, the pathogen population gave rise to a highly successful lineage that spread rapidly across the continent. Core to our understanding of what makes a successful pathogen is the genetic repertoire enabling the colonization and exploitation of host species. Here, we have assembled >100 genomes across two related genera to identify key genomic determinants leading to the emergence of chestnut blight. We found subtle yet highly specific changes in the transition from saprotrophy to latent pathogenicity mostly determined by enzymes involved in carbohydrate metabolism. Large-scale genomic analyses of genes underlying key nutrition modes can facilitate the detection of species with the potential to emerge as pathogens. Emerging fungal pathogens are a threat to forest and agroecosystems, as well as animal and human health. How pathogens evolve from nonpathogenic ancestors is still poorly understood, making the prediction of future outbreaks challenging. Most pathogens have evolved lifestyle adaptations, which were enabled by specific changes in the gene content of the species. Hence, understanding transitions in the functions encoded by genomes gives valuable insight into the evolution of pathogenicity. Here, we studied lifestyle evolution in the genus Cryphonectria, including the prominent invasive pathogen Cryphonectria parasitica, the causal agent of chestnut blight on Castanea species. We assembled and compared the genomes of pathogenic and putatively nonpathogenic Cryphonectria species, as well as sister group pathogens in the family Cryphonectriaceae (Diaporthales, Ascomycetes), to investigate the evolution of genome size and gene content. We found a striking loss of genes associated with carbohydrate metabolism (CAZymes) in C. parasitica compared to other Cryphonectriaceae. Despite substantial CAZyme gene loss, experimental data suggest that C. parasitica has retained wood colonization abilities shared with other Cryphonectria species. Putative effectors substantially varied in number, cysteine content, and protein length among species. In contrast, secondary metabolite gene clusters show a high degree of conservation within the genus. Overall, our results underpin the recent lifestyle transition of C. parasitica toward a more pathogenic lifestyle. Our findings suggest that a CAZyme loss may have promoted pathogenicity of C. parasitica on Castanea species. Analyzing gene complements underlying key nutrition modes can facilitate the detection of species with the potential to emerge as pathogens. IMPORTANCE Forest and agroecosystems, as well as animal and human health, are threatened by emerging pathogens. Following decimation of chestnuts in the United States, the fungal pathogen Cryphonectria parasitica colonized Europe. After establishment, the pathogen population gave rise to a highly successful lineage that spread rapidly across the continent. Core to our understanding of what makes a successful pathogen is the genetic repertoire enabling the colonization and exploitation of host species. Here, we have assembled >100 genomes across two related genera to identify key genomic determinants leading to the emergence of chestnut blight. We found subtle yet highly specific changes in the transition from saprotrophy to latent pathogenicity mostly determined by enzymes involved in carbohydrate metabolism. Large-scale genomic analyses of genes underlying key nutrition modes can facilitate the detection of species with the potential to emerge as pathogens.
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30
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Durán-Aranguren D, Chiriví-Salomón J, Anaya L, Durán-Sequeda D, Cruz L, Serrano J, Sarmiento L, Restrepo S, Sanjuan T, Sierra R. Effect of bioactive compounds extracted from Cordyceps nidus ANDES-F1080 on laccase activity of Pleurotus ostreatus ANDES-F515. BIOTECHNOLOGY REPORTS (AMSTERDAM, NETHERLANDS) 2020; 26:e00466. [PMID: 32617265 PMCID: PMC7322798 DOI: 10.1016/j.btre.2020.e00466] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Revised: 04/21/2020] [Accepted: 05/04/2020] [Indexed: 06/11/2023]
Abstract
Laccases are ligninolytic enzymes produced by different microorganisms, especially by fungi such as the white-rot fungus Pleurotus ostreatus. Chemical inductors have been used to promote laccase secretion due to the application of these enzymes in lignocellulosic biomass pretreatment. Cordyceps nidus ANDES-F1080 was previously described as a source of bioactive compounds that could influence the enzymatic production system of other fungi. For that reason, this study evaluates the effect of C. nidus' ANDES-F1080 extracts on the laccase activity of P. ostreatus ANDES-F515. To achieve this objective, C. nidus ANDES-F1080 was grown in four different substrates: two artificial-based and two natural-based culture media. Metabolites were extracted from C. nidus ANDES-F1080 using water and methanol as solvents. Biochemical characterization of these extracts was performed to complement the analysis of their effect on laccase activity. Our results revealed an enhancement on the laccase activity of P. ostreatus ANDES-F515 grown in natural-based cultures when C. nidus' ANDES-F1080 extracts were supplemented. The best laccase activities registered values around 10,575 ± 813 U·L-1.
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Affiliation(s)
- D. Durán-Aranguren
- Product and Processes Design Group, Department of Chemical Engineering, Universidad de Los Andes, Bogotá, Colombia
| | - J.S. Chiriví-Salomón
- Product and Processes Design Group, Department of Chemical Engineering, Universidad de Los Andes, Bogotá, Colombia
- Conservación, Bioprospección y Desarrollo Sostenible, Escuela de Ciencias Agrícolas, Pecuarias y del Medio Ambiente, Universidad Nacional Abierta y a Distancia, Bogotá, Colombia
| | - L. Anaya
- Product and Processes Design Group, Department of Chemical Engineering, Universidad de Los Andes, Bogotá, Colombia
| | - D. Durán-Sequeda
- Product and Processes Design Group, Department of Chemical Engineering, Universidad de Los Andes, Bogotá, Colombia
| | - L.J. Cruz
- Product and Processes Design Group, Department of Chemical Engineering, Universidad de Los Andes, Bogotá, Colombia
| | - J.D. Serrano
- Product and Processes Design Group, Department of Chemical Engineering, Universidad de Los Andes, Bogotá, Colombia
| | - L. Sarmiento
- Product and Processes Design Group, Department of Chemical Engineering, Universidad de Los Andes, Bogotá, Colombia
| | - S. Restrepo
- Laboratory of Mycology and Plant Diseases, Department of Biological Sciences, Universidad de Los Andes, Bogotá, Colombia
| | - T. Sanjuan
- Product and Processes Design Group, Department of Chemical Engineering, Universidad de Los Andes, Bogotá, Colombia
| | - R. Sierra
- Product and Processes Design Group, Department of Chemical Engineering, Universidad de Los Andes, Bogotá, Colombia
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31
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Lodens S, Roelants SLKW, Luyten G, Geys R, Coussement P, De Maeseneire SL, Soetaert W. Unraveling the regulation of sophorolipid biosynthesis in Starmerella bombicola. FEMS Yeast Res 2020; 20:5824630. [DOI: 10.1093/femsyr/foaa021] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Accepted: 04/22/2020] [Indexed: 01/18/2023] Open
Abstract
ABSTRACTStarmerella bombicola very efficiently produces the secondary metabolites sophorolipids (SLs). Their biosynthesis is not-growth associated and highly upregulated in the stationary phase. Despite high industrial and academic interest, the underlying regulation of SL biosynthesis remains unknown. In this paper, potential regulation of SL biosynthesis through the telomere positioning effect (TPE) was investigated, as the SL gene cluster is located adjacent to a telomere. An additional copy of this gene cluster was introduced elsewhere in the genome to investigate if this results in a decoy of regulation. Indeed, for the new strain, the onset of SL production was shifted to the exponential phase. This result was confirmed by RT-qPCR analysis. The TPE effect was further investigated by developing and applying a suitable reporter system for this non-conventional yeast, enabling non-biased comparison of gene expression between the subtelomeric CYP52M1- and the URA3 locus. This was done with a constitutive endogenous promotor (pGAPD) and one of the endogenous promotors of the SL biosynthetic gene cluster (pCYP52M1). A clear positioning effect was observed for both promotors with significantly higher GFP expression levels at the URA3 locus. No clear GFP upregulation was observed in the stationary phase for any of the new strains.
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Affiliation(s)
- Sofie Lodens
- Centre for Industrial Biotechnology and Biocatalysis (InBio.be), Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| | - Sophie L K W Roelants
- Centre for Industrial Biotechnology and Biocatalysis (InBio.be), Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| | - Goedele Luyten
- Centre for Industrial Biotechnology and Biocatalysis (InBio.be), Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| | - Robin Geys
- Centre for Industrial Biotechnology and Biocatalysis (InBio.be), Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| | - Pieter Coussement
- Centre for Industrial Biotechnology and Biocatalysis (InBio.be), Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| | - Sofie L De Maeseneire
- Centre for Industrial Biotechnology and Biocatalysis (InBio.be), Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| | - Wim Soetaert
- Centre for Industrial Biotechnology and Biocatalysis (InBio.be), Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
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32
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Overexpression of global regulator LaeA increases secondary metabolite production in Monascus purpureus. Appl Microbiol Biotechnol 2020; 104:3049-3060. [DOI: 10.1007/s00253-020-10379-4] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Revised: 01/05/2020] [Accepted: 01/14/2020] [Indexed: 12/25/2022]
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33
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Lukito Y, Chujo T, Hale TK, Mace W, Johnson LJ, Scott B. Regulation of subtelomeric fungal secondary metabolite genes by H3K4me3 regulators CclA and KdmB. Mol Microbiol 2019; 112:837-853. [DOI: 10.1111/mmi.14320] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/30/2019] [Indexed: 11/28/2022]
Affiliation(s)
- Yonathan Lukito
- Institute of Fundamental Sciences Massey University Palmerston North New Zealand
- Grasslands Research Centre AgResearch Limited Palmerston North New Zealand
| | - Tetsuya Chujo
- Institute of Fundamental Sciences Massey University Palmerston North New Zealand
| | - Tracy K. Hale
- Institute of Fundamental Sciences Massey University Palmerston North New Zealand
| | - Wade Mace
- Grasslands Research Centre AgResearch Limited Palmerston North New Zealand
| | - Linda J. Johnson
- Grasslands Research Centre AgResearch Limited Palmerston North New Zealand
| | - Barry Scott
- Institute of Fundamental Sciences Massey University Palmerston North New Zealand
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34
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Genetic regulation of aflatoxin, ochratoxin A, trichothecene, and fumonisin biosynthesis: A review. Int Microbiol 2019; 23:89-96. [DOI: 10.1007/s10123-019-00084-2] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2019] [Revised: 05/08/2019] [Accepted: 05/13/2019] [Indexed: 01/09/2023]
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35
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Oh HK, Joung HA, Jung M, Lee H, Kim MG. Rapid and Simple Detection of Ochratoxin A using Fluorescence Resonance Energy Transfer on Lateral Flow Immunoassay (FRET-LFI). Toxins (Basel) 2019; 11:E292. [PMID: 31126081 PMCID: PMC6563163 DOI: 10.3390/toxins11050292] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2019] [Revised: 05/22/2019] [Accepted: 05/23/2019] [Indexed: 11/16/2022] Open
Abstract
The detection of mycotoxins is crucial because of their toxicity in plants, animals, and humans. It is very important to determine whether food products are contaminated with mycotoxins such as ochratoxin A (OTA), as mycotoxins can survive heat treatments and hydrolysis. In this study, we designed a fluorescence resonance energy transfer (FRET)-based system that exploits antibody-antigen binding to detect mycotoxins more rapidly and easily than other currently available methods. In addition, we were able to effectively counteract the matrix effect in the sample by using a nitrocellulose membrane that enabled fluorescence measurement in coffee samples. The developed FRET on lateral flow immunoassay (FRET-LFI) system was used to detect OTA at a limit of detection (LOD) of 0.64 ng∙mL-1, and the test can be completed in only 30 min. Moreover, OTA in coffee samples was successfully detected at a LOD of 0.88 ng∙mL-1, overcoming the matrix effect, owing to the chromatographic properties of the capillary force of the membrane. We believe that the developed system can be used as a powerful tool for the sensitive diagnosis of harmful substances such as mycotoxins and pesticides for environmental and food quality control monitoring.
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Affiliation(s)
- Hyun-Kyung Oh
- Department of Chemistry, Gwangju Institute of Science and Technology, 123 Cheomdangawgi-ro, Buk-gu, Gwangju 61005, Korea.
| | - Hyou-Arm Joung
- Electrical & Computer Engineering Department, University of California, Los Angeles, CA 90095, USA.
| | - Minhyuk Jung
- Department of Chemistry, Gwangju Institute of Science and Technology, 123 Cheomdangawgi-ro, Buk-gu, Gwangju 61005, Korea.
| | - Hohjai Lee
- Department of Chemistry, Gwangju Institute of Science and Technology, 123 Cheomdangawgi-ro, Buk-gu, Gwangju 61005, Korea.
| | - Min-Gon Kim
- Department of Chemistry, Gwangju Institute of Science and Technology, 123 Cheomdangawgi-ro, Buk-gu, Gwangju 61005, Korea.
- INGIbio Co. Ltd., R&D Center, 206, APRI, 123 Cheomdangawgi-ro, Buk-gu, Gwangju 61005, Korea.
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36
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Baldeweg F, Warncke P, Fischer D, Gressler M. Fungal Biosurfactants from Mortierella alpina. Org Lett 2019; 21:1444-1448. [PMID: 30789272 DOI: 10.1021/acs.orglett.9b00193] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
The zygomycete Mortierella alpina is a well-known producer of polyunsaturated fatty acids in the food industry. Two series of its secondary metabolites are reported: Malpinins, a family of amphiphilic acetylated hexapeptides, were chemically characterized and serve as natural emulsifiers during lipid secretion. Additionally, hydrophobic cyclopentapeptides, malpibaldins, were structurally elucidated by NMR experiments, and their absolute stereochemistry was elucidated through chemical derivatization and synthesis. This work highlights lower fungi as a novel reservoir for natural products.
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Affiliation(s)
- Florian Baldeweg
- Pharmaceutical Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans-Knöll-Institute , Friedrich-Schiller-University Jena , Winzerlaer Strasse 2 , 07745 Jena , Germany
| | - Paul Warncke
- Pharmaceutical Technology and Biopharmacy , Friedrich-Schiller-University Jena , Lessingstrasse 8 , 07743 Jena , Germany
| | - Dagmar Fischer
- Pharmaceutical Technology and Biopharmacy , Friedrich-Schiller-University Jena , Lessingstrasse 8 , 07743 Jena , Germany
| | - Markus Gressler
- Pharmaceutical Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans-Knöll-Institute , Friedrich-Schiller-University Jena , Winzerlaer Strasse 2 , 07745 Jena , Germany
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Van Court RC, Robinson SC. Stimulating Production of Pigment-Type Secondary Metabolites from Soft Rotting Wood Decay Fungi ("Spalting" Fungi). ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2019; 169:109-124. [PMID: 30891625 DOI: 10.1007/10_2019_93] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
A small group of soft rotting wood decay fungi produce extracellular pigments as secondary metabolites in response to stress and as a means of resource capture. These fungi are collectively known as "spalting fungi" and have been used in wood art for centuries. The pigments produced by these fungi are finding increasing usage in industrial dye applications and green energy but remain problematic to grow in batch culture. Additionally problematic is that the pigments, especially the blue-green pigment known as xylindein, produced by Chlorociboria species, have yet to be fully synthesized. In order to further research development of these pigments and find success in areas such as textile and paint dyeing, wood UV protection, and organic photovoltaic cells, methods must be developed to mass produce the pigments. To date, three distinct methods have been developed, with varying degrees of success depending upon the fungal species (amended malt agar plates, shake liquid culture, and stationary liquid culture). This chapter details these three methods, their history, advantages and disadvantages, as well as their potential for industrial scale-up in the future. Graphical Abstract.
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Affiliation(s)
- R C Van Court
- Wood Science & Engineering, Oregon State University, Corvallis, OR, USA
| | - Seri C Robinson
- Wood Science & Engineering, Oregon State University, Corvallis, OR, USA.
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Diversity and evolution of polyketide biosynthesis gene clusters in the Ceratocystidaceae. Fungal Biol 2018; 122:856-866. [PMID: 30115319 DOI: 10.1016/j.funbio.2018.04.011] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2017] [Revised: 03/30/2018] [Accepted: 04/25/2018] [Indexed: 01/26/2023]
Abstract
Polyketides are secondary metabolites with diverse biological activities. Polyketide synthases (PKS) are often encoded from genes clustered in the same genomic region. Functional analyses and genomic studies show that most fungi are capable of producing a repertoire of polyketides. We considered the potential of Ceratocystidaceae for producing polyketides using a comparative genomics approach. Our aims were to identify the putative polyketide biosynthesis gene clusters, to characterize them and predict the types of polyketide compounds they might produce. We used sequences from nineteen species in the genera, Ceratocystis, Endoconidiophora, Davidsoniella, Huntiella, Thielaviopsis and Bretziella, to identify and characterize PKS gene clusters, by employing a range of bioinformatics and phylogenetic tools. We showed that the genomes contained putative clusters containing a non-reducing type I PKS and a type III PKS. Phylogenetic analyses suggested that these genes were already present in the ancestor of the Ceratocystidaceae. By contrast, the various reducing type I PKS-containing clusters identified in these genomes appeared to have distinct evolutionary origins. Although one of the identified clusters potentially allows for the production of melanin, their functional characterization will undoubtedly reveal many novel and important compounds implicated in the biology of the Ceratocystidaceae.
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Gil-Serna J, García-Díaz M, González-Jaén MT, Vázquez C, Patiño B. Description of an orthologous cluster of ochratoxin A biosynthetic genes in Aspergillus and Penicillium species. A comparative analysis. Int J Food Microbiol 2018; 268:35-43. [PMID: 29324288 DOI: 10.1016/j.ijfoodmicro.2017.12.028] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2017] [Revised: 12/22/2017] [Accepted: 12/29/2017] [Indexed: 11/26/2022]
Abstract
Ochratoxin A (OTA) is one of the most important mycotoxins due to its toxic properties and worldwide distribution which is produced by several Aspergillus and Penicillium species. The knowledge of OTA biosynthetic genes and understanding of the mechanisms involved in their regulation are essential. In this work, we obtained a clear picture of biosynthetic genes organization in the main OTA-producing Aspergillus and Penicillium species (A. steynii, A. westerdijkiae, A. niger, A. carbonarius and P. nordicum) using complete genome sequences obtained in this work or previously available on databases. The results revealed a region containing five ORFs which predicted five proteins: halogenase, bZIP transcription factor, cytochrome P450 monooxygenase, non-ribosomal peptide synthetase and polyketide synthase in all the five species. Genetic synteny was conserved in both Penicillium and Aspergillus species although genomic location seemed to be different since the clusters presented different flanking regions (except for A. steynii and A. westerdijkiae); these observations support the hypothesis of the orthology of this genomic region and that it might have been acquired by horizontal transfer. New real-time RT-PCR assays for quantification of the expression of these OTA biosynthetic genes were developed. In all species, the five genes were consistently expressed in OTA-producing strains in permissive conditions. These protocols might favour futures studies on the regulation of biosynthetic genes in order to develop new efficient control methods to avoid OTA entering the food chain.
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Affiliation(s)
- Jessica Gil-Serna
- Department of Microbiology III, Faculty of Biology, University Complutense of Madrid, Jose Antonio Novais 12, 28040 Madrid, Spain.
| | - Marta García-Díaz
- Department of Microbiology III, Faculty of Biology, University Complutense of Madrid, Jose Antonio Novais 12, 28040 Madrid, Spain
| | - María Teresa González-Jaén
- Department of Genetics, Faculty of Biology, University Complutense of Madrid, Jose Antonio Novais 12, 28040 Madrid, Spain
| | - Covadonga Vázquez
- Department of Microbiology III, Faculty of Biology, University Complutense of Madrid, Jose Antonio Novais 12, 28040 Madrid, Spain
| | - Belén Patiño
- Department of Microbiology III, Faculty of Biology, University Complutense of Madrid, Jose Antonio Novais 12, 28040 Madrid, Spain
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Ostachowska A, Stepnowski P, Gołębiowski M. Dicarboxylic acids and hydroxy fatty acids in different species of fungi. CHEMICAL PAPERS 2017. [DOI: 10.1007/s11696-016-0008-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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41
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Wu L, Qiu L, Zhang H, Sun J, Hu X, Wang B. Optimization for the Production of Deoxynivalenoland Zearalenone by Fusarium graminearum UsingResponse Surface Methodology. Toxins (Basel) 2017; 9:toxins9020057. [PMID: 28208576 PMCID: PMC5331436 DOI: 10.3390/toxins9020057] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2016] [Revised: 01/26/2017] [Accepted: 02/04/2017] [Indexed: 11/16/2022] Open
Abstract
Fusarium mycotoxins deoxynivalenol (DON) and zearalenone (ZEN) are the most common contaminants in cereals worldwide, causing a wide range of adverse health effects on animals and humans. Many environmental factors can affect the production of these mycotoxins. Here, we have used response surface methodology (RSM) to optimize the Fusarium graminearum strain 29 culture conditions for maximal toxin production. Three factors, medium pH, incubation temperature and time, were optimized using a Box-Behnken design (BBD). The optimized conditions for DON production were pH 4.91 and an incubation temperature of 23.75 °C for 28 days, while maximal ZEN production required pH 9.00 and an incubation temperature of 15.05 °C for 28 days. The maximum levels of DON and ZEN production were 2811.17 ng/mL and 23789.70 ng/mL, respectively. Considering the total level of DON and ZEN, desirable yields of the mycotoxins were still obtained with medium pH of 6.86, an incubation temperature of 17.76 °C and a time of 28 days. The corresponding experimental values, from the validation experiments, fitted well with these predictions. This suggests that RSM could be used to optimize Fusarium mycotoxin levels, which are further purified for use as potential mycotoxin standards. Furthermore, it shows that acidic pH is a determinant for DON production, while an alkaline environment and lower temperature (approximately 15 °C) are favorable for ZEN accumulation. After extraction, separation and purification processes, the isolated mycotoxins were obtained through a simple purification process, with desirable yields, and acceptable purity. The mycotoxins could be used as potential analytical standards or chemical reagents for routine analysis.
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Affiliation(s)
- Li Wu
- Institute of Crop Science, Chinese Academy of Agricultural Sciences, No.12 Zhongguancun South St., Haidian District, Beijing 100081, China.
- Laboratory of Quality and Safety Risk Assessment for Cereal Products (Beijing), Ministry of Agriculture, Beijing 100081, China.
| | - Lijuan Qiu
- Institute of Crop Science, Chinese Academy of Agricultural Sciences, No.12 Zhongguancun South St., Haidian District, Beijing 100081, China.
| | - Huijie Zhang
- Institute of Crop Science, Chinese Academy of Agricultural Sciences, No.12 Zhongguancun South St., Haidian District, Beijing 100081, China.
- Laboratory of Quality and Safety Risk Assessment for Cereal Products (Beijing), Ministry of Agriculture, Beijing 100081, China.
| | - Juan Sun
- Institute of Crop Science, Chinese Academy of Agricultural Sciences, No.12 Zhongguancun South St., Haidian District, Beijing 100081, China.
- Laboratory of Quality and Safety Risk Assessment for Cereal Products (Beijing), Ministry of Agriculture, Beijing 100081, China.
| | - Xuexu Hu
- Institute of Crop Science, Chinese Academy of Agricultural Sciences, No.12 Zhongguancun South St., Haidian District, Beijing 100081, China.
- Laboratory of Quality and Safety Risk Assessment for Cereal Products (Beijing), Ministry of Agriculture, Beijing 100081, China.
| | - Bujun Wang
- Institute of Crop Science, Chinese Academy of Agricultural Sciences, No.12 Zhongguancun South St., Haidian District, Beijing 100081, China.
- Laboratory of Quality and Safety Risk Assessment for Cereal Products (Beijing), Ministry of Agriculture, Beijing 100081, China.
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42
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Enniatin and Beauvericin Biosynthesis in Fusarium Species: Production Profiles and Structural Determinant Prediction. Toxins (Basel) 2017; 9:toxins9020045. [PMID: 28125067 PMCID: PMC5331425 DOI: 10.3390/toxins9020045] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2016] [Revised: 01/16/2017] [Accepted: 01/18/2017] [Indexed: 11/17/2022] Open
Abstract
Members of the fungal genus Fusarium can produce numerous secondary metabolites, including the nonribosomal mycotoxins beauvericin (BEA) and enniatins (ENNs). Both mycotoxins are synthesized by the multifunctional enzyme enniatin synthetase (ESYN1) that contains both peptide synthetase and S-adenosyl-l-methionine-dependent N-methyltransferase activities. Several Fusarium species can produce ENNs, BEA or both, but the mechanism(s) enabling these differential metabolic profiles is unknown. In this study, we analyzed the primary structure of ESYN1 by sequencing esyn1 transcripts from different Fusarium species. We measured ENNs and BEA production by ultra-performance liquid chromatography coupled with photodiode array and Acquity QDa mass detector (UPLC-PDA-QDa) analyses. We predicted protein structures, compared the predictions by multivariate analysis methods and found a striking correlation between BEA/ENN-producing profiles and ESYN1 three-dimensional structures. Structural differences in the β strand's Asn789-Ala793 and His797-Asp802 portions of the amino acid adenylation domain can be used to distinguish BEA/ENN-producing Fusarium isolates from those that produce only ENN.
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43
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Targeting Other Mycotoxin Biosynthetic Genes. Methods Mol Biol 2016. [PMID: 27924541 DOI: 10.1007/978-1-4939-6707-0_14] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
Abstract
Real-time PCR (qPCR) methods are adequate tools for sensitive and rapid detection and quantification of toxigenic molds contaminating food commodities. Methods of qPCR for quantifying zearalenone (ZEA)-, sterigmatocystin (ST)-, cyclopiazonic acid (CPA)-, and patulin (PAT)-producing molds have been designed on the basis of specific target genes involved in the biosynthesis of these mycotoxins. In this chapter reliable qPCR protocols to detect and quantify such toxigenic molds are described. All of these methods are suitable when working with mold pure cultures and mold contaminated foods. For ZEA-producing molds, two qPCR using the SYBR Green fluorochrome and based on two polyketide synthase (PKS) genes are detailed. qPCR protocols relied on the fluG and the idh genes able to quantify ST- and PAT-producing molds, respectively, which can be performed by both SYBR Green and TaqMan methodologies are described. Regarding CPA-producing molds a TaqManq PCR method including a competitive internal amplification control is detailed. Since DNA extraction is a critical step in the detection and quantification of toxigenic molds by qPCR, a protocol for extracting DNA from mold pure cultures and food is also described.
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44
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Nai C, Magrini B, Offe J. Let microorganisms do the talking, let us talk more about microorganisms. Fungal Biol Biotechnol 2016; 3:5. [PMID: 28955464 PMCID: PMC5611652 DOI: 10.1186/s40694-016-0023-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2016] [Accepted: 06/21/2016] [Indexed: 01/05/2023] Open
Abstract
Microorganisms are of uttermost importance, yet in the eyes of the general public they are often associated with dirt and diseases. At the same time, microbiologists have access to and comprehensive knowledge of just a tiny minority of the microbial diversity existing in nature. In this commentary, we present these issues of public misconception and scientific limitations and their possible consequences, and propose ways to overcome them. A particular interest is directed toward the secondary metabolism of filamentous fungi as well as novel outreach activities, including so-called “science slams” and interactions between the arts and the sciences, to raise awareness about the relevance of microorganisms.
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Affiliation(s)
- Corrado Nai
- Department Applied and Molecular Microbiology, Institute of Biotechnology, Technical University of Berlin, Gustav-Meyer-Allee 25, 13355 Berlin, Germany.,Federation of the European Microbiological Societies (FEMS), Delftechpark 37a, 2628 XJ Delft, The Netherlands
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45
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Jia M, Chen L, Xin HL, Zheng CJ, Rahman K, Han T, Qin LP. A Friendly Relationship between Endophytic Fungi and Medicinal Plants: A Systematic Review. Front Microbiol 2016; 7:906. [PMID: 27375610 PMCID: PMC4899461 DOI: 10.3389/fmicb.2016.00906] [Citation(s) in RCA: 267] [Impact Index Per Article: 33.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2015] [Accepted: 05/26/2016] [Indexed: 11/13/2022] Open
Abstract
Endophytic fungi or endophytes exist widely inside the healthy tissues of living plants, and are important components of plant micro-ecosystems. Over the long period of evolution, some co-existing endophytes and their host plants have established a special relationship with one and another, which can significantly influence the formation of metabolic products in plants, then affect quality and quantity of crude drugs derived from medicinal plants. This paper will focus on the increasing knowledge of relationships between endophytic fungi and medicinal plants through reviewing of published research data obtained from the last 30 years. The analytical results indicate that the distribution and population structure of endophytes can be considerably affected by factors, such as the genetic background, age, and environmental conditions of their hosts. On the other hand, the endophytic fungi can also confer profound impacts on their host plants by enhancing their growth, increasing their fitness, strengthening their tolerances to abiotic and biotic stresses, and promoting their accumulation of secondary metabolites. All the changes are very important for the production of bioactive components in their hosts. Hence, it is essential to understand such relationships between endophytic fungi and their host medicinal plants. Such knowledge can be well exploited and applied for the production of better and more drugs from medicinal plants.
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Affiliation(s)
- Min Jia
- Department of Pharmacognosy, School of Pharmacy, Second Military Medical UniversityShanghai, China
| | - Ling Chen
- Department of Pharmacognosy, School of Pharmacy, Second Military Medical UniversityShanghai, China
| | - Hai-Liang Xin
- Department of Pharmacognosy, School of Pharmacy, Second Military Medical UniversityShanghai, China
| | - Cheng-Jian Zheng
- Department of Pharmacognosy, School of Pharmacy, Second Military Medical UniversityShanghai, China
| | - Khalid Rahman
- Department of Physiological Biochemistry, School of Pharmacy and Biomolecular Sciences, Liverpool John Moores UniversityLiverpool, UK
| | - Ting Han
- Department of Pharmacognosy, School of Pharmacy, Second Military Medical UniversityShanghai, China
| | - Lu-Ping Qin
- Department of Pharmacognosy, School of Pharmacy, Second Military Medical UniversityShanghai, China
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46
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Wang Y, Wang L, Liu F, Wang Q, Selvaraj JN, Xing F, Zhao Y, Liu Y. Ochratoxin A Producing Fungi, Biosynthetic Pathway and Regulatory Mechanisms. Toxins (Basel) 2016; 8:E83. [PMID: 27007394 PMCID: PMC4810228 DOI: 10.3390/toxins8030083] [Citation(s) in RCA: 92] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2016] [Revised: 02/28/2016] [Accepted: 03/14/2016] [Indexed: 11/16/2022] Open
Abstract
Ochratoxin A (OTA), mainly produced by Aspergillus and Penicillum species, is one of the most important mycotoxin contaminants in agricultural products. It is detrimental to human health because of its nephrotoxicity, hepatotoxicity, carcinogenicity, teratogenicity, and immunosuppression. OTA structurally consists of adihydrocoumarin moiety linked with l-phenylalanine via an amide bond. OTA biosynthesis has been putatively hypothesized, although several contradictions exist on some processes of the biosynthetic pathway. We discuss recent information on molecular studies of OTA biosynthesis despite insufficient genetic background in detail. Accordingly, genetic regulation has also been explored with regard to the interaction between the regulators and the environmental factors. In this review, we focus on three aspects of OTA: OTA-producing strains, OTA biosynthetic pathway and the regulation mechanisms of OTA production. This can pave the way to assist in protecting food and feed from OTA contamination by understanding OTA biosynthetic pathway and regulatory mechanisms.
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Affiliation(s)
- Yan Wang
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, 1 Nongda South Road, Xibeiwang Town, Haidian District, Beijing 100193, China.
- Key Laboratory of Agro-products Processing, Ministry of Agriculture, 1 Nongda South Road, Xibeiwang Town, Haidian District, Beijing 100193, China.
| | - Liuqing Wang
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, 1 Nongda South Road, Xibeiwang Town, Haidian District, Beijing 100193, China.
| | - Fei Liu
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, 1 Nongda South Road, Xibeiwang Town, Haidian District, Beijing 100193, China.
| | - Qi Wang
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, 1 Nongda South Road, Xibeiwang Town, Haidian District, Beijing 100193, China.
| | - Jonathan Nimal Selvaraj
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, 1 Nongda South Road, Xibeiwang Town, Haidian District, Beijing 100193, China.
| | - Fuguo Xing
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, 1 Nongda South Road, Xibeiwang Town, Haidian District, Beijing 100193, China.
- Key Laboratory of Agro-products Processing, Ministry of Agriculture, 1 Nongda South Road, Xibeiwang Town, Haidian District, Beijing 100193, China.
| | - Yueju Zhao
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, 1 Nongda South Road, Xibeiwang Town, Haidian District, Beijing 100193, China.
- Key Laboratory of Agro-products Processing, Ministry of Agriculture, 1 Nongda South Road, Xibeiwang Town, Haidian District, Beijing 100193, China.
| | - Yang Liu
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, 1 Nongda South Road, Xibeiwang Town, Haidian District, Beijing 100193, China.
- Key Laboratory of Agro-products Processing, Ministry of Agriculture, 1 Nongda South Road, Xibeiwang Town, Haidian District, Beijing 100193, China.
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47
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Evaluation of kojic acid production in a repeated-batch PCS biofilm reactor. J Biotechnol 2016; 218:41-8. [DOI: 10.1016/j.jbiotec.2015.11.023] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2015] [Revised: 11/17/2015] [Accepted: 11/30/2015] [Indexed: 01/09/2023]
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48
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Deepika VB, Murali TS, Satyamoorthy K. Modulation of genetic clusters for synthesis of bioactive molecules in fungal endophytes: A review. Microbiol Res 2015; 182:125-40. [PMID: 26686621 DOI: 10.1016/j.micres.2015.10.009] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2015] [Revised: 10/21/2015] [Accepted: 10/26/2015] [Indexed: 11/26/2022]
Abstract
Novel drugs with unique and targeted mode of action are very much need of the hour to treat and manage severe multidrug infections and other life-threatening complications. Though natural molecules have proved to be effective and environmentally safe, the relative paucity of discovery of new drugs has forced us to lean towards synthetic chemistry for developing novel drug molecules. Plants and microbes are the major resources that we rely upon in our pursuit towards discovery of novel compounds of pharmacological importance with less toxicity. Endophytes, an eclectic group of microbes having the potential to chemically bridge the gap between plants and microbes, have attracted the most attention due to their relatively high metabolic versatility. Since continuous large scale supply of major metabolites from microfungi and especially endophytes is severely impeded by the phenomenon of attenuation in axenic cultures, the major challenge is to understand the regulatory mechanisms in operation that drive the expression of metabolic gene clusters of pharmaceutical importance. This review is focused on the major regulatory elements that operate in filamentous fungi and various combinatorial multi-disciplinary approaches involving bioinformatics, molecular biology, and metabolomics that could aid in large scale synthesis of important lead molecules.
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Affiliation(s)
- V B Deepika
- Division of Biotechnology, School of Life Sciences, Manipal University, Manipal 576104, India
| | - T S Murali
- Division of Biotechnology, School of Life Sciences, Manipal University, Manipal 576104, India.
| | - K Satyamoorthy
- Division of Biotechnology, School of Life Sciences, Manipal University, Manipal 576104, India
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49
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Nirlane da Costa Souza P, Luiza Bim Grigoletto T, Alberto Beraldo de Moraes L, Abreu LM, Henrique Souza Guimarães L, Santos C, Ribeiro Galvão L, Gomes Cardoso P. Production and chemical characterization of pigments in filamentous fungi. MICROBIOLOGY-SGM 2015; 162:12-22. [PMID: 26341482 DOI: 10.1099/mic.0.000168] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Production of pigments by filamentous fungi is gaining interest owing to their use as food colourants, in cosmetics and textiles, and because of the important biological activities of these compounds. In this context, the objectives of this study were to select pigment-producing fungi, identify these fungi based on internal transcribed spacer sequences, evaluate the growth and pigment production of the selected strains on four different media, and characterize the major coloured metabolites in their extracts. Of the selected fungal strains, eight were identified as Aspergillus sydowii (CML2967), Aspergillus aureolatus (CML2964), Aspergillus keveii (CML2968), Penicillium flavigenum (CML2965), Penicillium chermesinum (CML2966), Epicoccum nigrum (CML2971), Lecanicillium aphanocladii (CML2970) and Fusarium sp. (CML2969). Fungal pigment production was influenced by medium composition. Complex media, such as potato dextrose and malt extract, favoured increased pigment production. The coloured compounds oosporein, orevactaene and dihydrotrichodimerol were identified in extracts of L. aphanocladii (CML2970), E. nigrum (CML2971), and P. flavigenum (CML2965), respectively. These results indicate that the selected fungal strains can serve as novel sources of pigments that have important industrial applications.
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Affiliation(s)
| | - Tahuana Luiza Bim Grigoletto
- Department of Chemistry, Faculty of Philosophy, Sciences and Letters of Ribeirão Preto - USP, Ribeirão Preto, SP, Brazil
| | - Luiz Alberto Beraldo de Moraes
- Department of Chemistry, Faculty of Philosophy, Sciences and Letters of Ribeirão Preto - USP, Ribeirão Preto, SP, Brazil
| | - Lucas M Abreu
- Department of Phytopathology, Federal University of Lavras, MG, Brazil
| | - Luís Henrique Souza Guimarães
- Department of Biology, Faculty of Philosophy, Sciences and Letters of Ribeirão Preto - USP, Ribeirão Preto, SP, Brazil
| | - Cledir Santos
- Department of Biology, Post-Graduate Program in Agriculture Microbiology, Federal University of Lavras, MG, Brazil.,Department of Chemical Sciences and Natural Resources, Faculty of Engineering and Sciences, Universidad de La Frontera, Temuco, Chile
| | | | - Patrícia Gomes Cardoso
- Department of Biology, Post-Graduate Program in Agriculture Microbiology, Federal University of Lavras, MG, Brazil
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50
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Jal S, Khora SS. An overview on the origin and production of tetrodotoxin, a potent neurotoxin. J Appl Microbiol 2015; 119:907-16. [PMID: 26178523 DOI: 10.1111/jam.12896] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2015] [Revised: 05/26/2015] [Accepted: 06/20/2015] [Indexed: 12/18/2022]
Abstract
Tetrodotoxin (TTX) is a deadly neurotoxin which selectively inhibits Na(+) activation mechanism of nerve impulse, without affecting the permeability of K(+) ions. Because of this sodium channel blocking action, it is majorly being studied for biomedical applications. TTX is present in taxonomically diverse groups of animals inhabiting terrestrial, marine, fresh water and brackish water environments, still its origin remains unclear. The extensive study of the toxin has revealed a few possibilities of its origin. This review reports on the aspects of the origin of TTX, where the primary focus is on its exogenous origin. The significance of bacterial, cellular and environmental factors in its biogenesis and accumulation is also discussed. The possible facets for engineering the bacterial genomics to modulate the gene expression for TTX production are also outlined.
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Affiliation(s)
- S Jal
- Medical Biotechnology Lab, School of Biosciences & Technology, VIT University, Vellore, India
| | - S S Khora
- Medical Biotechnology Lab, School of Biosciences & Technology, VIT University, Vellore, India
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