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Lu Y, Lin Y, Wang J. Progress on functions of intracellular domain of trimeric ligand-gated ion channels. Zhejiang Da Xue Xue Bao Yi Xue Ban 2024; 53:221-230. [PMID: 38310082 PMCID: PMC11057991 DOI: 10.3724/zdxbyxb-2023-0472] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2023] [Accepted: 11/11/2023] [Indexed: 02/05/2024]
Abstract
Ligand-gated ion channels are a large category of essential ion channels, modulating their state by binding to specific ligands to allow ions to pass through the cell membrane. Purinergic ligand-gated ion channel receptors (P2XRs) and acid-sensitive ion channels (ASICs) are representative members of trimeric ligand-gated ion channel. Recent studies have shown that structural differences in the intracellular domain of P2XRs may determine the desensitization process. The lateral fenestrations of P2XRs potentially serve as a pathway for ion conductance and play a decisive role in ion selectivity. Phosphorylation of numerous amino acid residues in the P2XRs are involved in regulating the activity of ion channels. Additionally, the P2XRs interact with other ligand-gated ion channels including N-methyl-D-aspartate receptors, γ-aminobutyric acid receptors, 5-hydroxytryptamin receptors and nicotinic acetylcholine receptors, mediating physiological processes such as synaptic plasticity. Conformational changes in the intracellular domain of the ASICs expose binding sites of intracellular signal partners, facilitating metabolic signal transduction. Amino acids such as Val16, Ser17, Ile18, Gln19 and Ala20 in the ASICs participate in channel opening and membrane expression. ASICs can also bind to intracellular proteins, such as CIPP and p11, to regulate channel function. Many phosphorylation sites at the C-terminus and N-terminus of ASICs are involved in the regulation of receptors. Furthermore, ASICs are involved in various physiological and pathophysiological processes, which include pain, ischemic stroke, psychiatric disorders, and neurodegenerative disease. In this article, we review the roles of the intracellular domains of these trimeric ligand-gated ion channels in channel gating as well as their physiological and pathological functions, in order to provide new insights into the discovery of related drugs.
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Affiliation(s)
- Yan Lu
- School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, Nanjing 210009, China.
| | - Yiyu Lin
- School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, Nanjing 210009, China
| | - Jin Wang
- School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, Nanjing 210009, China.
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2
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Mohamad FH, Mohamad Jamali MA, Che Has AT. Structure-function Studies of GABA (A) Receptors and Related computer-aided Studies. J Mol Neurosci 2023; 73:804-817. [PMID: 37750966 DOI: 10.1007/s12031-023-02158-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Accepted: 09/12/2023] [Indexed: 09/27/2023]
Abstract
The γ-aminobutyric acid type A receptor (GABA (A) receptor) is a membrane protein activated by the neurotransmitter GABA. Structurally, this major inhibitory neurotransmitter receptor in the human central nervous system is a pentamer that can be built from a selection of 19 subunits consisting of α(1,2,3,4,5 or 6), β (1,2 or 3), γ (1,2 or 3), ρ (1,2 or 3), and δ, π, θ, and ε. This creates several possible pentameric arrangements, which also influence the pharmacological and physiological properties of the receptor. The complexity and heterogeneity of the receptors are further increased by the addition of short and long splice variants in several subunits and the existence of multiple allosteric binding sites and expansive ligands that can bind to the receptors. Therefore, a comprehensive understanding of the structure and function of the receptors is required to gain novel insights into the consequences of receptor dysfunction and subsequent drug development studies. Notably, advancements in computational-aided studies have facilitated the elucidation of residual interactions and exploring energy binding, which may otherwise be challenging to investigate. In this review, we aim to summarize the current understanding of the structure and function of GABA (A) receptors obtained from advancements in computational-aided applications.
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Affiliation(s)
- Fatin H Mohamad
- Department of Neurosciences, School of Medical Sciences, Universiti Sains Malaysia, Health Campus, Kubang Kerian, 16150 Kota Bharu, Kelantan, Malaysia
| | - Muhamad Arif Mohamad Jamali
- Faculty of Science and Technology, Universiti Sains Islam Malaysia, Bandar Baru Nilai, 71800, Nilai, Negeri Sembilan, Malaysia
| | - Ahmad Tarmizi Che Has
- Department of Neurosciences, School of Medical Sciences, Universiti Sains Malaysia, Health Campus, Kubang Kerian, 16150 Kota Bharu, Kelantan, Malaysia.
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3
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Kłopotowski K, Michałowski MA, Gos M, Mosiądz D, Czyżewska MM, Mozrzymas JW. Mutation of valine 53 at the interface between extracellular and transmembrane domains of the β 2 principal subunit affects the GABA A receptor gating. Eur J Pharmacol 2023; 947:175664. [PMID: 36934960 DOI: 10.1016/j.ejphar.2023.175664] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Revised: 02/09/2023] [Accepted: 03/16/2023] [Indexed: 03/21/2023]
Abstract
GABAA receptors (gamma-aminobutyric acid type A receptors) are pentameric ligand-gated ion channels mediating inhibition in adult mammalian brains. Their static structure has been intensely studied in the past years but the underlying molecular activatory mechanisms remain obscure. The interface between extracellular and transmembrane domains has been recognized as a key player in the receptor gating. However, the role of the valine 53 in the β1-β2 loop of the principal subunit (β2) remains controversial showing differences compared to homologous residues in some cys-loop counterparts such as nAChR. To address the role of the β2V53 residue in the α1β2γ2L receptor gating, we performed high resolution macroscopic and single-channel recordings. To explore underlying molecular mechanisms a variety of substituting amino acids were investigated: Glutamate and Lysine (different electric charge), Alanine (aliphatic, larger than Valine) and Histidine (same residue as in homologous α1H55). We report that mutation of the β2V53 residue results in alterations of nearly all gating transitions including opening/closing, preactivation and desensitization. A dramatic gating impairment was observed for glutamate substitution (β2V53E) but β2V53K mutation had a weak effect. The impact of histidine substitution was also small while β2V53A markedly affected the receptor but to a smaller extent than β2V53E. Considering available structures in desensitized and bicuculline blocked shut states we propose that strongly detrimental effect of β2V53E mutation on receptor activation results from electrostatic interaction between the glutamate and β2K274 on the loop M2-M3 which stabilizes the receptor in the shut state. We conclude that β2V53 is strongly involved in mechanisms underlying the receptor gating.
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Affiliation(s)
- Karol Kłopotowski
- Wroclaw Medical University, Department of Biophysics and Neuroscience, Chałubińskiego 3a, Wrocław, Dolnośląskie, PL 50-368, Poland.
| | - Michał A Michałowski
- Wroclaw Medical University, Department of Biophysics and Neuroscience, Chałubińskiego 3a, Wrocław, Dolnośląskie, PL 50-368, Poland
| | - Michalina Gos
- Wroclaw Medical University, Department of Biophysics and Neuroscience, Chałubińskiego 3a, Wrocław, Dolnośląskie, PL 50-368, Poland; University of Wroclaw, Department of Molecular Physiology and Neurobiology, Sienkiewicza 21, Wrocław, Dolnośląskie, Pl 50-335, Poland
| | - Daniela Mosiądz
- Wroclaw Medical University, Department of Biophysics and Neuroscience, Chałubińskiego 3a, Wrocław, Dolnośląskie, PL 50-368, Poland
| | - Marta M Czyżewska
- Wroclaw Medical University, Department of Biophysics and Neuroscience, Chałubińskiego 3a, Wrocław, Dolnośląskie, PL 50-368, Poland
| | - Jerzy W Mozrzymas
- Wroclaw Medical University, Department of Biophysics and Neuroscience, Chałubińskiego 3a, Wrocław, Dolnośląskie, PL 50-368, Poland; University of Wroclaw, Department of Molecular Physiology and Neurobiology, Sienkiewicza 21, Wrocław, Dolnośląskie, Pl 50-335, Poland.
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4
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Kaczor PT, Michałowski MA, Mozrzymas JW. α 1 Proline 277 Residues Regulate GABA AR Gating through M2-M3 Loop Interaction in the Interface Region. ACS Chem Neurosci 2022; 13:3044-3056. [PMID: 36219829 PMCID: PMC9634794 DOI: 10.1021/acschemneuro.2c00401] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023] Open
Abstract
Cys-loop receptors are a superfamily of transmembrane, pentameric receptors that play a crucial role in mammalian CNS signaling. Physiological activation of these receptors is typically initiated by neurotransmitter binding to the orthosteric binding site, located at the extracellular domain (ECD), which leads to the opening of the channel pore (gate) at the transmembrane domain (TMD). Whereas considerable knowledge on molecular mechanisms of Cys-loop receptor activation was gathered for the acetylcholine receptor, little is known with this respect about the GABAA receptor (GABAAR), which mediates cellular inhibition. Importantly, several static structures of GABAAR were recently described, paving the way to more in-depth molecular functional studies. Moreover, it has been pointed out that the TMD-ECD interface region plays a crucial role in transduction of conformational changes from the ligand binding site to the channel gate. One of the interface structures implicated in this transduction process is the M2-M3 loop with a highly conserved proline (P277) residue. To address this issue specifically for α1β2γ2L GABAAR, we choose to substitute proline α1P277 with amino acids with different physicochemical features such as electrostatic charge or their ability to change the loop flexibility. To address the functional impact of these mutations, we performed macroscopic and single-channel patch-clamp analyses together with modeling. Our findings revealed that mutation of α1P277 weakly affected agonist binding but was critical for all transitions of GABAAR gating: opening/closing, preactivation, and desensitization. In conclusion, we provide evidence that conservative α1P277 at the interface is strongly involved in regulating the receptor gating.
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5
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GABA A receptor proline 273 at the interdomain interface of the β 2 subunit regulates entry into desensitization and opening/closing transitions. Life Sci 2022; 308:120943. [PMID: 36096246 DOI: 10.1016/j.lfs.2022.120943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 08/29/2022] [Accepted: 09/06/2022] [Indexed: 11/23/2022]
Abstract
AIMS GABAA receptors belong to Cys-loop ion channel family and mediate inhibition in the brain. Despite the abundance of structural data on receptor structure, the molecular scenarios of activation are unknown. In this study we investigated the role of a β2P273 residue in channel gating transitions. This residue is located in a central position of the M2-M3 linker of the interdomain interface, expected to be predisposed to interact with another interfacial element, the β1-β2 loop of the extracellular side. The interactions occurring on this interface have been reported to couple agonist binding to channel gating. MAIN METHODS We recorded micro- and macroscopic current responses of recombinant GABAA receptors mutated at the β2P273 residue (to A, K, E) to saturating GABA. Electrophysiological data served as basis to kinetic modeling, used to decipher which gating transition were affected by mutations. KEY FINDINGS Mutations of this residue impaired macroscopic desensitization and accelerated current deactivation with P273E mutant showing greatest deviation from wild-type. Single-channel analysis revealed alterations mainly in short-lived shut times and shortening of openings, resulting in dramatic changes in intraburst open probability. Kinetic modeling indicated that β2P273 mutants show diminished entry into desensitized and open states as well as faster channel closing transitions. SIGNIFICANCE In conclusion, we demonstrate that β2P273 of the M2-M3 linker is a crucial element of the ECD-TMD interface regulating the receptor's ability to undergo late gating transitions. Henceforth, this region could be an important target for new pharmacological tools affecting GABAAR-mediated inhibition.
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Bavo F, de-Jong H, Petersen J, Falk-Petersen CB, Löffler R, Sparrow E, Rostrup F, Eliasen JN, Wilhelmsen KS, Barslund K, Bundgaard C, Nielsen B, Kristiansen U, Wellendorph P, Bogdanov Y, Frølund B. Structure-Activity Studies of 3,9-Diazaspiro[5.5]undecane-Based γ-Aminobutyric Acid Type A Receptor Antagonists with Immunomodulatory Effect. J Med Chem 2021; 64:17795-17812. [PMID: 34908407 DOI: 10.1021/acs.jmedchem.1c00290] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The 3,9-diazaspiro[5.5]undecane-based compounds 2027 and 018 have previously been reported to be potent competitive γ-aminobutyric acid type A receptor (GABAAR) antagonists showing low cellular membrane permeability. Given the emerging peripheral application of GABAAR ligands, we hypothesize 2027 analogs as promising lead structures for peripheral GABAAR inhibition. We herein report a study on the structural determinants of 2027 in order to suggest a potential binding mode as a basis for rational design. The study identified the importance of the spirocyclic benzamide, compensating for the conventional acidic moiety, for GABAAR ligands. The structurally simplified m-methylphenyl analog 1e displayed binding affinity in the high-nanomolar range (Ki = 180 nM) and was superior to 2027 and 018 regarding selectivity for the extrasynaptic α4βδ subtype versus the α1- and α2- containing subtypes. Importantly, 1e was shown to efficiently rescue inhibition of T cell proliferation, providing a platform to explore the immunomodulatory potential for this class of compounds.
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Affiliation(s)
- Francesco Bavo
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark
| | - Heleen de-Jong
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark
| | - Jonas Petersen
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark
- Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, DK-2200 Copenhagen, Denmark
| | - Christina Birkedahl Falk-Petersen
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark
| | - Rebekka Löffler
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark
| | - Emma Sparrow
- Antibody and Vaccine Group, Centre for Cancer Immunology, MP127, University of Southampton Faculty of Medicine, Southampton, Hants SO16 6YD, United Kingdom
| | - Frederik Rostrup
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark
| | - Jannik Nicklas Eliasen
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark
| | - Kristine S Wilhelmsen
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark
| | - Kasper Barslund
- Translational DMPK, H. Lundbeck A/S, Ottiliavej 9, 2500 Valby, Denmark
| | | | - Birgitte Nielsen
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark
| | - Uffe Kristiansen
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark
| | - Petrine Wellendorph
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark
| | - Yury Bogdanov
- Antibody and Vaccine Group, Centre for Cancer Immunology, MP127, University of Southampton Faculty of Medicine, Southampton, Hants SO16 6YD, United Kingdom
| | - Bente Frølund
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark
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7
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Terejko K, Michałowski MA, Iżykowska I, Dominik A, Brzóstowicz A, Mozrzymas JW. Mutations at the M2 and M3 Transmembrane Helices of the GABA ARs α 1 and β 2 Subunits Affect Primarily Late Gating Transitions Including Opening/Closing and Desensitization. ACS Chem Neurosci 2021; 12:2421-2436. [PMID: 34101432 PMCID: PMC8291490 DOI: 10.1021/acschemneuro.1c00151] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
Abstract
![]()
GABA type A receptors
(GABAARs) belong to the pentameric
ligand-gated ion channel (pLGIC) family and play a crucial role in
mediating inhibition in the adult mammalian brain. Recently, a major
progress in determining the static structure of GABAARs
was achieved, although precise molecular scenarios underlying conformational
transitions remain unclear. The ligand binding sites (LBSs) are located
at the extracellular domain (ECD), very distant from the receptor
gate at the channel pore. GABAAR gating is complex, comprising
three major categories of transitions: openings/closings, preactivation,
and desensitization. Interestingly, mutations at, e.g., the ligand
binding site affect not only binding but often also more than one
gating category, suggesting that structural determinants for distinct
conformational transitions are shared. Gielen and co-workers (2015)
proposed that the GABAAR desensitization gate is located
at the second and third transmembrane segment. However, studies of
our and others’ groups indicated that other parts of the GABAAR macromolecule might be involved in this process. In the
present study, we asked how selected point mutations (β2G254V, α1G258V, α1L300V,
and β2L296V) at the M2 and M3 transmembrane segments
affect gating transitions of the α1β2γ2 GABAAR. Using high resolution macroscopic
and single-channel recordings and analysis, we report that these substitutions,
besides affecting desensitization, also profoundly altered openings/closings,
having some minor effect on preactivation and agonist binding. Thus,
the M2 and M3 segments primarily control late gating transitions of
the receptor (desensitization, opening/closing), providing a further
support for the concept of diffuse gating mechanisms for conformational
transitions of GABAAR.
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Affiliation(s)
- Katarzyna Terejko
- Department of Biophysics and Neuroscience, Wrocław Medical University, ul. Chałubińskiego 3A, 50-368 Wrocław, Poland
| | - Michał A. Michałowski
- Department of Biophysics and Neuroscience, Wrocław Medical University, ul. Chałubińskiego 3A, 50-368 Wrocław, Poland
- Department of Molecular Physiology and Neurobiology, University of Wrocław, ul. Sienkiewicza 21, 50-335 Wrocław, Poland
| | - Ilona Iżykowska
- Department of Biophysics and Neuroscience, Wrocław Medical University, ul. Chałubińskiego 3A, 50-368 Wrocław, Poland
| | - Anna Dominik
- Department of Biophysics and Neuroscience, Wrocław Medical University, ul. Chałubińskiego 3A, 50-368 Wrocław, Poland
| | - Aleksandra Brzóstowicz
- Department of Biophysics and Neuroscience, Wrocław Medical University, ul. Chałubińskiego 3A, 50-368 Wrocław, Poland
| | - Jerzy W. Mozrzymas
- Department of Biophysics and Neuroscience, Wrocław Medical University, ul. Chałubińskiego 3A, 50-368 Wrocław, Poland
- Department of Molecular Physiology and Neurobiology, University of Wrocław, ul. Sienkiewicza 21, 50-335 Wrocław, Poland
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Kłopotowski K, Czyżewska MM, Mozrzymas JW. Glycine substitution of α1F64 residue at the loop D of GABA A receptor impairs gating - Implications for importance of binding site-channel gate linker rigidity. Biochem Pharmacol 2021; 192:114668. [PMID: 34216603 DOI: 10.1016/j.bcp.2021.114668] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Revised: 06/27/2021] [Accepted: 06/28/2021] [Indexed: 12/29/2022]
Abstract
GABAA receptors (GABAARs) play a crucial role in mediating inhibition in adult mammalian brains. In the recent years, an impressive progress in revealing the static structure of GABAARs was achieved but the molecular mechanisms underlying their conformational transitions remain elusive. Phenylalanine 64 (α1F64) is located at the loop D of the orthosteric binding site of GABAAR and was found to directly interact with GABA molecule. Mutations of α1F64 were demonstrated to affect not only binding but also some gating properties. Loop D is a rigid β strand which seems to be particularly suitable to convey activatory signaling from the ligand binding site (LBS) to the gate at the channel pore. To test this scenario, we have investigated the substitution of α1F64 with glycine, the smallest amino acid, widely recognized as a rigidity "reducer" of protein structures. To this end, we assessed the impact of the α1F64G mutation in the α1β2γ2L type of GABAARs on gating properties by analyzing both macroscopic responses to rapid agonist applications and single-channel currents. We found that this substitution dramatically altered all gating features of the receptor (opening/closing, preactivation and desensitization) which contrasts with markedly weaker effects of previously considered substitutions (α1F64L and α1F64A). In particular, α1F64G mutation practically abolished the desensitization process. At the same time, the α1F64G mutant maintained gating integrity manifested as single-channel activity in the form of clusters. We conclude that rigidity of the loop D plays a crucial role in conveying the activation signal from the LBS to the channel gate.
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Affiliation(s)
- Karol Kłopotowski
- Wroclaw Medical University, Department of Biophysics and Neuroscience, Chalubinskiego 3A, Wroclaw, Dolnośląskie PL 50-368, +48 71 784 15 51, Poland.
| | - Marta M Czyżewska
- Wroclaw Medical University, Department of Biophysics and Neuroscience, Chalubinskiego 3A, Wroclaw, Dolnośląskie PL 50-368, +48 71 784 15 51, Poland
| | - Jerzy W Mozrzymas
- Wroclaw Medical University, Department of Biophysics and Neuroscience, Chalubinskiego 3A, Wroclaw, Dolnośląskie PL 50-368, +48 71 784 15 51, Poland.
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The β 2 subunit E155 residue as a proton sensor at the binding site on GABA type A receptors. Eur J Pharmacol 2021; 906:174293. [PMID: 34214584 DOI: 10.1016/j.ejphar.2021.174293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Revised: 06/22/2021] [Accepted: 06/28/2021] [Indexed: 11/22/2022]
Abstract
GABA type A receptor plays a key role in inhibitory signaling in the adult central nervous system. This receptor can be modulated by protons but the underlying molecular mechanisms have not been fully explored. To find possible pH-sensor residues, a comparative study for proton-activated GLIC channel and α1β2γ2 GABA receptor was performed and pK 's of respective residues were estimated by numerical algorithms which consider local interactions. β E155, located at the GABA binding site, showed pKa values close to physiological values and dependence on the receptor state and ligation, suggesting a role in modulation by pH. To validate this prediction, pH sensitivity of current responses to GABA was investigated using patch-clamp technique for WT and mutated (β2E155[C, S, Q, L]) GABA receptors. Cysteine mutation preserved pH sensitivity. However, for remaining mutants, the sensitivity to acidification (pH = 6.0) was reduced becoming not statistically significant. The effect of alkaline pH (8.0) was maintained for all mutants with exception for β2E155L for which it was nearly abolished. To further explore the impact of considered mutations, molecular docking was performed which indicated that pH modulation is probably affected by interplay between binding site residues, zwitterion GABA and protons. These data, altogether, indicate that mutation of β2E155 to hydrophobic residue (L) maximally impaired pH modulation while for polar substitutions the effect was smaller. In conclusion, our data provide evidence that a key binding site residue β2E155 plays an important role in proton sensitivity of GABA receptor.
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Golani LK, Platt DM, Rüedi-Bettschen D, Edwanker C, Huang S, Poe MM, Furtmüller R, Sieghart W, Cook JM, Rowlett JK. 8-Substituted Triazolobenzodiazepines: In Vitro and In Vivo Pharmacology in Relation to Structural Docking at the α1 Subunit-Containing GABA A Receptor. Front Pharmacol 2021; 12:625233. [PMID: 33959005 PMCID: PMC8094182 DOI: 10.3389/fphar.2021.625233] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Accepted: 02/26/2021] [Indexed: 11/25/2022] Open
Abstract
In order to develop improved anxiolytic drugs, 8-substituted analogs of triazolam were synthesized in an effort to discover compounds with selectivity for α2/α3 subunit-containing GABAA subtypes. Two compounds in this series, XLi-JY-DMH (6-(2-chlorophenyl)-8-ethynyl-1-methyl-4H-benzo [f][1,2,4]triazolo[4,3-a][1,4]diazepine) and SH-TRI-108 [(E)-8-ethynyl-1-methyl-6-(pyridin-2-yl)-4H-benzo [f][1,2,4]triazolo[4,3-a][1,4]diazepine], were evaluated for in vitro and in vivo properties associated with GABAA subtype-selective ligands. In radioligand binding assays conducted in transfected HEK cells containing rat αXβ3γ2 subtypes (X = 1,2,3,5), no evidence of selectivity was obtained, although differences in potency relative to triazolam were observed overall (triazolam > XLi-JY-DMH > SH-TRI-108). In studies with rat αXβ3γ2 subtypes (X = 1,2,3,5) using patch-clamp electrophysiology, no differences in maximal potentiation of GABA-mediated Cl- current was obtained across subtypes for any compound. However, SH-TRI-108 demonstrated a 25-fold difference in functional potency between α1β3γ2 vs. α2β3γ2 subtypes. We evaluated the extent to which this potency difference translated into behavioral pharmacological differences in monkeys. In a rhesus monkey conflict model of anxiolytic-like effects, triazolam, XLi-JY-DMH, and SH-TR-108 increased rates of responding attenuated by shock (anti-conflict effect) but also attenuated non-suppressed responding. In a squirrel monkey observation procedure, both analogs engendered a profile of sedative-motor effects similar to that reported previously for triazolam. In molecular docking studies, we found that the interactions of the 8-ethynyl triazolobenzodiazepines with the C-loop of the α1GABAA site was stronger than that of imidazodiazepines XHe-II-053 and HZ-166, which may account for the non-sedating yet anxiolytic profile of these latter compounds when evaluated in previous studies.
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Affiliation(s)
- Lalit K. Golani
- Department of Chemistry and Biochemistry, University of Wisconsin-Milwaukee, Milwaukee, WI, United States
| | - Donna M. Platt
- Department of Psychiatry and Human Behavior, University of Mississippi Medical Center, Jackson, MS, United States
- Harvard Medical School, New England Primate Research Center, Southborough, MA, United States
| | - Daniela Rüedi-Bettschen
- Department of Psychiatry and Human Behavior, University of Mississippi Medical Center, Jackson, MS, United States
- Harvard Medical School, New England Primate Research Center, Southborough, MA, United States
| | - Chitra Edwanker
- Department of Chemistry and Biochemistry, University of Wisconsin-Milwaukee, Milwaukee, WI, United States
| | - Shenming Huang
- Department of Chemistry and Biochemistry, University of Wisconsin-Milwaukee, Milwaukee, WI, United States
| | - Michael M. Poe
- Department of Chemistry and Biochemistry, University of Wisconsin-Milwaukee, Milwaukee, WI, United States
| | | | - Werner Sieghart
- Brain Research Institute, Medical University, Vienna, Austria
| | - James M. Cook
- Department of Chemistry and Biochemistry, University of Wisconsin-Milwaukee, Milwaukee, WI, United States
| | - James K. Rowlett
- Department of Psychiatry and Human Behavior, University of Mississippi Medical Center, Jackson, MS, United States
- Harvard Medical School, New England Primate Research Center, Southborough, MA, United States
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Gibbs E, Chakrapani S. Structure, Function and Physiology of 5-Hydroxytryptamine Receptors Subtype 3. Subcell Biochem 2021; 96:373-408. [PMID: 33252737 DOI: 10.1007/978-3-030-58971-4_11] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
5-hydroxytryptamine receptor subtype 3 (5-HT3R) is a pentameric ligand-gated ion channel (pLGIC) involved in neuronal signaling. It is best known for its prominent role in gut-CNS signaling though there is growing interest in its other functions, particularly in modulating non-serotonergic synaptic activity. Recent advances in structural biology have provided mechanistic understanding of 5-HT3R function and present new opportunities for the field. This chapter gives a broad overview of 5-HT3R from a physiological and structural perspective and then discusses the specific details of ion permeation, ligand binding and allosteric coupling between these two events. Biochemical evidence is summarized and placed within a physiological context. This perspective underscores the progress that has been made as well as outstanding challenges and opportunities for future 5-HT3R research.
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Affiliation(s)
- Eric Gibbs
- Department of Physiology and Biophysics, Case Western Reserve University, Cleveland, OH, 44106-4970, USA.
| | - Sudha Chakrapani
- Department of Physiology and Biophysics, Case Western Reserve University, Cleveland, OH, 44106-4970, USA. .,Department of Neuroscience, School of Medicine, Case Western Reserve University, Cleveland, OH, 44106-4970, USA.
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Kaczor PT, Wolska AD, Mozrzymas JW. α 1 Subunit Histidine 55 at the Interface between Extracellular and Transmembrane Domains Affects Preactivation and Desensitization of the GABA A Receptor. ACS Chem Neurosci 2021; 12:562-572. [PMID: 33471498 PMCID: PMC7875458 DOI: 10.1021/acschemneuro.0c00781] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
Abstract
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The
GABAA receptor is a member of the Cys-loop family
and plays a crucial role in the adult mammalian brain inhibition.
Although the static structure of this receptor is emerging, the molecular
mechanisms underlying its conformational transitions remain elusive.
It is known that in the Cys-loop receptors, the interface between
extracellular and transmembrane domains plays a key role in transmitting
the “activation wave” down to the channel gate in the
pore. It has been previously reported that histidine 55 (H55), located
centrally at the interfacial β1−β2 loop of the
α1 subunit, is important in the receptor activation,
but it is unknown which specific gating steps it is affecting. In
the present study, we addressed this issue by taking advantage of
the state-of-the-art macroscopic and single-channel recordings together
with extensive modeling. Considering that H55 is known to affect the
local electrostatic landscape and because it is neighbored by two
negatively charged aspartates, a well conserved feature in the α
subunits, we considered substitution with negative (E) and positive
(K) residues. We found that these mutations markedly affected the
receptor gating, altering primarily preactivation and desensitization
transitions. Importantly, opposite effects were observed for these
two mutations strongly suggesting involvement of electrostatic interactions.
Single-channel recordings suggested also a minor effect on opening/closing
transitions which did not depend on the electric charge of the substituting
amino acid. Altogether, we demonstrate that H55 mutations affect primarily
preactivation and desensitization most likely by influencing local
electrostatic interactions at the receptor interface.
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Affiliation(s)
- Przemyslaw T. Kaczor
- Department of Biophysics and Neuroscience, Wroclaw Medical University, Chalubinskiego 3a, Wroclaw, Dolnoślaskie 50-368, Poland
| | - Aleksandra D. Wolska
- Department of Biophysics and Neuroscience, Wroclaw Medical University, Chalubinskiego 3a, Wroclaw, Dolnoślaskie 50-368, Poland
| | - Jerzy W. Mozrzymas
- Department of Biophysics and Neuroscience, Wroclaw Medical University, Chalubinskiego 3a, Wroclaw, Dolnoślaskie 50-368, Poland
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Interaction between GABA A receptor α 1 and β 2 subunits at the N-terminal peripheral regions is crucial for receptor binding and gating. Biochem Pharmacol 2020; 183:114338. [PMID: 33189674 DOI: 10.1016/j.bcp.2020.114338] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2020] [Revised: 11/09/2020] [Accepted: 11/09/2020] [Indexed: 01/08/2023]
Abstract
Pentameric ligand gated ion channels (pLGICs) are crucial in electrochemical signaling but exact molecular mechanisms of their activation remain elusive. So far, major effort focused on the top-down molecular pathway between the ligand binding site and the channel gate. However, recent studies revealed that pLGIC activation is associated with coordinated subunit twisting in the membrane plane. This suggests a key role of intersubunit interactions but the underlying mechanisms remain largely unknown. Herein, we investigated a "peripheral" subunit interface region of GABAA receptor where structural modeling indicated interaction between N-terminal α1F14 and β2F31 residues. Our experiments underscored a crucial role of this interaction in ligand binding and gating, especially preactivation and opening, showing that the intersubunit cross-talk taking place outside (above) the top-down pathway can be strongly involved in receptor activation. Thus, described here intersubunit interaction appears to operate across a particularly long distance, affecting vast portions of the macromolecule.
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