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McGregor JN, Grassler AL, Jaffe PI, Jacob AL, Brainard MS, Sober SJ. Shared mechanisms of auditory and non-auditory vocal learning in the songbird brain. eLife 2022; 11:75691. [PMID: 36107757 PMCID: PMC9522248 DOI: 10.7554/elife.75691] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Accepted: 09/14/2022] [Indexed: 01/18/2023] Open
Abstract
Songbirds and humans share the ability to adaptively modify their vocalizations based on sensory feedback. Prior studies have focused primarily on the role that auditory feedback plays in shaping vocal output throughout life. In contrast, it is unclear how non-auditory information drives vocal plasticity. Here, we first used a reinforcement learning paradigm to establish that somatosensory feedback (cutaneous electrical stimulation) can drive vocal learning in adult songbirds. We then assessed the role of a songbird basal ganglia thalamocortical pathway critical to auditory vocal learning in this novel form of vocal plasticity. We found that both this circuit and its dopaminergic inputs are necessary for non-auditory vocal learning, demonstrating that this pathway is critical for guiding adaptive vocal changes based on both auditory and somatosensory signals. The ability of this circuit to use both auditory and somatosensory information to guide vocal learning may reflect a general principle for the neural systems that support vocal plasticity across species.
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Affiliation(s)
- James N McGregor
- Neuroscience Graduate Program, Graduate Division of Biological and Biomedical Sciences, Laney Graduate School, Emory University, Atlanta, United States
| | | | - Paul I Jaffe
- Center for Integrative Neuroscience, University of California, San Francisco, San Francisco, United States
| | | | - Michael S Brainard
- Center for Integrative Neuroscience, University of California, San Francisco, San Francisco, United States.,Howard Hughes Medical Institute, University of California, San Francisco, San Francisco, United States
| | - Samuel J Sober
- Department of Biology, Emory University, Atlanta, United States
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2
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Abram SJ, Poggensee KL, Sánchez N, Simha SN, Finley JM, Collins SH, Donelan JM. General variability leads to specific adaptation toward optimal movement policies. Curr Biol 2022; 32:2222-2232.e5. [PMID: 35537453 PMCID: PMC9504978 DOI: 10.1016/j.cub.2022.04.015] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2021] [Revised: 02/03/2022] [Accepted: 04/07/2022] [Indexed: 01/29/2023]
Abstract
Our nervous systems can learn optimal control policies in response to changes to our bodies, tasks, and movement contexts. For example, humans can learn to adapt their control policy in walking contexts where the energy-optimal policy is shifted along variables such as step frequency or step width. However, it is unclear how the nervous system determines which ways to adapt its control policy. Here, we asked how human participants explore through variations in their control policy to identify more optimal policies in new contexts. We created new contexts using exoskeletons that apply assistive torques to each ankle at each walking step. We analyzed four variables that spanned the levels of the whole movement, the joint, and the muscle: step frequency, ankle angle range, total soleus activity, and total medial gastrocnemius activity. We found that, across all of these analyzed variables, variability increased upon initial exposure to new contexts and then decreased with experience. This led to adaptive changes in the magnitude of specific variables, and these changes were correlated with reduced energetic cost. The timescales by which adaptive changes progressed and variability decreased were faster for some variables than others, suggesting a reduced search space within which the nervous system continues to optimize its policy. These collective findings support the principle that exploration through general variability leads to specific adaptation toward optimal movement policies.
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Affiliation(s)
- Sabrina J Abram
- School of Engineering Science, Simon Fraser University, Burnaby, BC V5A 1S6, Canada
| | | | - Natalia Sánchez
- Division of Biokinesiology and Physical Therapy, University of Southern California, Los Angeles, CA 90089, USA
| | - Surabhi N Simha
- Department of Biomedical Engineering, Emory University, Atlanta, GA 30322, USA
| | - James M Finley
- Division of Biokinesiology and Physical Therapy, University of Southern California, Los Angeles, CA 90089, USA; Department of Biomedical Engineering, University of Southern California, Los Angeles, CA 90089, USA; Neuroscience Graduate Program, University of Southern California, Los Angeles, CA 90089, USA
| | - Steven H Collins
- Department of Mechanical Engineering, Stanford University, Stanford, CA 94305, USA
| | - J Maxwell Donelan
- Department of Biomedical Physiology and Kinesiology, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.
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3
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Hernández DG, Sober SJ, Nemenman I. Unsupervised Bayesian Ising Approximation for decoding neural activity and other biological dictionaries. eLife 2022; 11:e68192. [PMID: 35315769 PMCID: PMC8989415 DOI: 10.7554/elife.68192] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Accepted: 03/19/2022] [Indexed: 11/13/2022] Open
Abstract
The problem of deciphering how low-level patterns (action potentials in the brain, amino acids in a protein, etc.) drive high-level biological features (sensorimotor behavior, enzymatic function) represents the central challenge of quantitative biology. The lack of general methods for doing so from the size of datasets that can be collected experimentally severely limits our understanding of the biological world. For example, in neuroscience, some sensory and motor codes have been shown to consist of precisely timed multi-spike patterns. However, the combinatorial complexity of such pattern codes have precluded development of methods for their comprehensive analysis. Thus, just as it is hard to predict a protein's function based on its sequence, we still do not understand how to accurately predict an organism's behavior based on neural activity. Here, we introduce the unsupervised Bayesian Ising Approximation (uBIA) for solving this class of problems. We demonstrate its utility in an application to neural data, detecting precisely timed spike patterns that code for specific motor behaviors in a songbird vocal system. In data recorded during singing from neurons in a vocal control region, our method detects such codewords with an arbitrary number of spikes, does so from small data sets, and accounts for dependencies in occurrences of codewords. Detecting such comprehensive motor control dictionaries can improve our understanding of skilled motor control and the neural bases of sensorimotor learning in animals. To further illustrate the utility of uBIA, we used it to identify the distinct sets of activity patterns that encode vocal motor exploration versus typical song production. Crucially, our method can be used not only for analysis of neural systems, but also for understanding the structure of correlations in other biological and nonbiological datasets.
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Affiliation(s)
- Damián G Hernández
- Department of Medical Physics, Centro Atómico Bariloche and Instituto BalseiroBarilocheArgentina
- Department of Physics, Emory UniversityAtlantaUnited States
| | - Samuel J Sober
- Department of Biology, Emory UniversityAtlantaUnited States
| | - Ilya Nemenman
- Department of Physics, Emory UniversityAtlantaUnited States
- Department of Biology, Emory UniversityAtlantaUnited States
- Initiative in Theory and Modeling of Living SystemsAtlantaUnited States
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4
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Hughes S, Celikel T. Prominent Inhibitory Projections Guide Sensorimotor Computation: An Invertebrate Perspective. Bioessays 2019; 41:e1900088. [DOI: 10.1002/bies.201900088] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Revised: 07/17/2019] [Indexed: 12/17/2022]
Affiliation(s)
- Samantha Hughes
- HAN BioCentreHAN University of Applied Sciences Nijmegen 6525EM The Netherlands
| | - Tansu Celikel
- Department of Neurophysiology, Donders Institute for Brain Cognition and BehaviourRadboud University Nijmegen 6525AJ The Netherlands
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5
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Saravanan V, Hoffmann LA, Jacob AL, Berman GJ, Sober SJ. Dopamine Depletion Affects Vocal Acoustics and Disrupts Sensorimotor Adaptation in Songbirds. eNeuro 2019; 6:ENEURO.0190-19.2019. [PMID: 31126913 PMCID: PMC6565373 DOI: 10.1523/eneuro.0190-19.2019] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2019] [Accepted: 05/18/2019] [Indexed: 12/28/2022] Open
Abstract
Dopamine is hypothesized to convey error information in reinforcement learning tasks with explicit appetitive or aversive cues. However, during motor skill learning feedback signals arise from an animal's evaluation of sensory feedback resulting from its own behavior, rather than any external reward or punishment. It has previously been shown that intact dopaminergic signaling from the ventral tegmental area/substantia nigra pars compacta (VTA/SNc) complex is necessary for vocal learning when songbirds modify their vocalizations to avoid hearing distorted auditory feedback (playbacks of white noise). However, it remains unclear whether dopaminergic signaling underlies vocal learning in response to more naturalistic errors (pitch-shifted feedback delivered via headphones). We used male Bengalese finches (Lonchura striata var. domestica) to test the hypothesis that the necessity of dopamine signaling is shared between the two types of learning. We combined 6-hydroxydopamine (6-OHDA) lesions of dopaminergic terminals within Area X, a basal ganglia nucleus critical for song learning, with a headphones learning paradigm that shifted the pitch of auditory feedback and compared their learning to that of unlesioned controls. We found that 6-OHDA lesions affected song behavior in two ways. First, over a period of days lesioned birds systematically lowered their pitch regardless of the presence or absence of auditory errors. Second, 6-OHDA lesioned birds also displayed severe deficits in sensorimotor learning in response to pitch-shifted feedback. Our results suggest roles for dopamine in both motor production and auditory error processing, and a shared mechanism underlying vocal learning in response to both distorted and pitch-shifted auditory feedback.
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Affiliation(s)
- Varun Saravanan
- Neuroscience Graduate Program, Graduate Division of Biological and Biomedical Sciences, Laney Graduate School, Emory University, Atlanta, GA 30322
| | - Lukas A Hoffmann
- Neuroscience Graduate Program, Graduate Division of Biological and Biomedical Sciences, Laney Graduate School, Emory University, Atlanta, GA 30322
| | - Amanda L Jacob
- Department of Biology, Emory University, Atlanta, GA 30322
| | - Gordon J Berman
- Department of Biology, Emory University, Atlanta, GA 30322
- Department of Physics, Emory University, Atlanta, GA 30322
| | - Samuel J Sober
- Department of Biology, Emory University, Atlanta, GA 30322
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6
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Chance, long tails, and inference in a non-Gaussian, Bayesian theory of vocal learning in songbirds. Proc Natl Acad Sci U S A 2018; 115:E8538-E8546. [PMID: 30127024 DOI: 10.1073/pnas.1713020115] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
Traditional theories of sensorimotor learning posit that animals use sensory error signals to find the optimal motor command in the face of Gaussian sensory and motor noise. However, most such theories cannot explain common behavioral observations, for example, that smaller sensory errors are more readily corrected than larger errors and large abrupt (but not gradually introduced) errors lead to weak learning. Here, we propose a theory of sensorimotor learning that explains these observations. The theory posits that the animal controls an entire probability distribution of motor commands rather than trying to produce a single optimal command and that learning arises via Bayesian inference when new sensory information becomes available. We test this theory using data from a songbird, the Bengalese finch, that is adapting the pitch (fundamental frequency) of its song following perturbations of auditory feedback using miniature headphones. We observe the distribution of the sung pitches to have long, non-Gaussian tails, which, within our theory, explains the observed dynamics of learning. Further, the theory makes surprising predictions about the dynamics of the shape of the pitch distribution, which we confirm experimentally.
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Nicholson DA, Roberts TF, Sober SJ. Thalamostriatal and cerebellothalamic pathways in a songbird, the Bengalese finch. J Comp Neurol 2018; 526:1550-1570. [PMID: 29520771 PMCID: PMC5899675 DOI: 10.1002/cne.24428] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2017] [Revised: 01/29/2018] [Accepted: 02/02/2018] [Indexed: 12/20/2022]
Abstract
The thalamostriatal system is a major network in the mammalian brain, originating principally from the intralaminar nuclei of thalamus. Its functions remain unclear, but a subset of these projections provides a pathway through which the cerebellum communicates with the basal ganglia. Both the cerebellum and basal ganglia play crucial roles in motor control. Although songbirds have yielded key insights into the neural basis of vocal learning, it is unknown whether a thalamostriatal system exists in the songbird brain. Thalamic nucleus DLM is an important part of the song system, the network of nuclei required for learning and producing song. DLM receives output from song system basal ganglia nucleus Area X and sits within dorsal thalamus, the proposed avian homolog of the mammalian intralaminar nuclei that also receives projections from the cerebellar nuclei. Using a viral vector that specifically labels presynaptic axon segments, we show in Bengalese finches that dorsal thalamus projects to Area X, the basal ganglia nucleus of the song system, and to surrounding medial striatum. To identify the sources of thalamic input to Area X, we map DLM and cerebellar-recipient dorsal thalamus (DTCbN ). Surprisingly, we find both DLM and dorsal anterior DTCbN adjacent to DLM project to Area X. In contrast, the ventral medial subregion of DTCbN projects to medial striatum outside Area X. Our results suggest the basal ganglia in the song system, like the mammalian basal ganglia, integrate feedback from the thalamic region to which they project as well as thalamic regions that receive cerebellar output.
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Affiliation(s)
- David A Nicholson
- Graduate Program in Neuroscience, Emory University, Atlanta, 30322, Georgia
- Department of Biology, Emory University, Atlanta, 30322, Georgia
| | - Todd F Roberts
- Department of Neuroscience, UT Southwestern Medical Center, Dallas, Texas, 75390-9111
| | - Samuel J Sober
- Department of Biology, Emory University, Atlanta, 30322, Georgia
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Zollinger SA, Slater PJB, Nemeth E, Brumm H. Higher songs of city birds may not be an individual response to noise. Proc Biol Sci 2018; 284:rspb.2017.0602. [PMID: 28794216 DOI: 10.1098/rspb.2017.0602] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2017] [Accepted: 07/03/2017] [Indexed: 12/17/2022] Open
Abstract
It has been observed in many songbird species that populations in noisy urban areas sing with a higher minimum frequency than do matched populations in quieter, less developed areas. However, why and how this divergence occurs is not yet understood. We experimentally tested whether chronic noise exposure during vocal learning results in songs with higher minimum frequencies in great tits (Parus major), the first species for which a correlation between anthropogenic noise and song frequency was observed. We also tested vocal plasticity of adult great tits in response to changing background noise levels by measuring song frequency and amplitude as we changed noise conditions. We show that noise exposure during ontogeny did not result in songs with higher minimum frequencies. In addition, we found that adult birds did not make any frequency or song usage adjustments when their background noise conditions were changed after song crystallization. These results challenge the common view of vocal adjustments by city birds, as they suggest that either noise itself is not the causal force driving the divergence of song frequency between urban and forest populations, or that noise induces population-wide changes over a time scale of several generations rather than causing changes in individual behaviour.
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Affiliation(s)
- Sue Anne Zollinger
- Communication and Social Behaviour Group, Max Planck Institute for Ornithology, 82319 Seewiesen, Germany
| | - Peter J B Slater
- School of Biology, University of St Andrews, St Andrews KY16 9TH, UK
| | - Erwin Nemeth
- Communication and Social Behaviour Group, Max Planck Institute for Ornithology, 82319 Seewiesen, Germany.,BirdLife Austria, 1070 Vienna, Austria
| | - Henrik Brumm
- Communication and Social Behaviour Group, Max Planck Institute for Ornithology, 82319 Seewiesen, Germany
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9
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Echoes on the motor network: how internal motor control structures afford sensory experience. Brain Struct Funct 2017; 222:3865-3888. [DOI: 10.1007/s00429-017-1484-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2017] [Accepted: 07/25/2017] [Indexed: 01/10/2023]
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Konopka G, Roberts TF. Insights into the Neural and Genetic Basis of Vocal Communication. Cell 2016; 164:1269-1276. [PMID: 26967292 DOI: 10.1016/j.cell.2016.02.039] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2015] [Indexed: 12/11/2022]
Abstract
The use of vocalizations to communicate information and elaborate social bonds is an adaptation seen in many vertebrate species. Human speech is an extreme version of this pervasive form of communication. Unlike the vocalizations exhibited by the majority of land vertebrates, speech is a learned behavior requiring early sensory exposure and auditory feedback for its development and maintenance. Studies in humans and a small number of other species have provided insights into the neural and genetic basis for learned vocal communication and are helping to delineate the roles of brain circuits across the cortex, basal ganglia, and cerebellum in generating vocal behaviors. This Review provides an outline of the current knowledge about these circuits and the genes implicated in vocal communication, as well as a perspective on future research directions in this field.
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Affiliation(s)
- Genevieve Konopka
- Department of Neuroscience, UT Southwestern Medical Center, Dallas, TX 75390-9111, USA.
| | - Todd F Roberts
- Department of Neuroscience, UT Southwestern Medical Center, Dallas, TX 75390-9111, USA.
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