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Lin CY, Wu JCH, Kuan YM, Liu YC, Chang PY, Chen JP, Lu HHS, Lee OKS. Precision Identification of Locally Advanced Rectal Cancer in Denoised CT Scans Using EfficientNet and Voting System Algorithms. Bioengineering (Basel) 2024; 11:399. [PMID: 38671820 PMCID: PMC11048699 DOI: 10.3390/bioengineering11040399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Revised: 04/11/2024] [Accepted: 04/16/2024] [Indexed: 04/28/2024] Open
Abstract
BACKGROUND AND OBJECTIVE Local advanced rectal cancer (LARC) poses significant treatment challenges due to its location and high recurrence rates. Accurate early detection is vital for treatment planning. With magnetic resonance imaging (MRI) being resource-intensive, this study explores using artificial intelligence (AI) to interpret computed tomography (CT) scans as an alternative, providing a quicker, more accessible diagnostic tool for LARC. METHODS In this retrospective study, CT images of 1070 T3-4 rectal cancer patients from 2010 to 2022 were analyzed. AI models, trained on 739 cases, were validated using two test sets of 134 and 197 cases. By utilizing techniques such as nonlocal mean filtering, dynamic histogram equalization, and the EfficientNetB0 algorithm, we identified images featuring characteristics of a positive circumferential resection margin (CRM) for the diagnosis of locally advanced rectal cancer (LARC). Importantly, this study employs an innovative approach by using both hard and soft voting systems in the second stage to ascertain the LARC status of cases, thus emphasizing the novelty of the soft voting system for improved case identification accuracy. The local recurrence rates and overall survival of the cases predicted by our model were assessed to underscore its clinical value. RESULTS The AI model exhibited high accuracy in identifying CRM-positive images, achieving an area under the curve (AUC) of 0.89 in the first test set and 0.86 in the second. In a patient-based analysis, the model reached AUCs of 0.84 and 0.79 using a hard voting system. Employing a soft voting system, the model attained AUCs of 0.93 and 0.88, respectively. Notably, AI-identified LARC cases exhibited a significantly higher five-year local recurrence rate and displayed a trend towards increased mortality across various thresholds. Furthermore, the model's capability to predict adverse clinical outcomes was superior to those of traditional assessments. CONCLUSION AI can precisely identify CRM-positive LARC cases from CT images, signaling an increased local recurrence and mortality rate. Our study presents a swifter and more reliable method for detecting LARC compared to traditional CT or MRI techniques.
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Affiliation(s)
- Chun-Yu Lin
- Institute of Clinical Medicine, National Yang Ming Chiao Tung University, Taipei 11221, Taiwan;
- Division of Colorectal Surgery, Department of Surgery, Taichung Veterans General Hospital, Taichung 40705, Taiwan
- School of Medicine, National Defense Medical Center, Taipei 11490, Taiwan
| | - Jacky Chung-Hao Wu
- Institute of Statistics, National Yang Ming Chiao Tung University, Hsinchu 300093, Taiwan;
| | - Yen-Ming Kuan
- Institute of Multimedia Engineering, National Yang Ming Chiao Tung University, Hsinchu 300093, Taiwan;
| | - Yi-Chun Liu
- Department of Post-Baccalaureate Medicine, College of Medicine, National Chung Hsing University, Taichung 402202, Taiwan;
- Department of Radiation Oncology, Taichung Veterans General Hospital, Taichung 40705, Taiwan
| | - Pi-Yi Chang
- Department of Radiology, Taichung Veterans General Hospital, Taichung 40705, Taiwan;
| | - Jun-Peng Chen
- Biostatistics Task Force, Taichung Veterans General Hospital, Taichung 40705, Taiwan;
| | - Henry Horng-Shing Lu
- Institute of Statistics, National Yang Ming Chiao Tung University, Hsinchu 300093, Taiwan;
- Department of Statistics and Data Science, Cornell University, Ithaca, NY 14853, USA
| | - Oscar Kuang-Sheng Lee
- Institute of Clinical Medicine, National Yang Ming Chiao Tung University, Taipei 11221, Taiwan;
- Stem Cell Research Center, National Yang Ming Chiao Tung University, Taipei 11221, Taiwan
- Department of Medical Research, Taipei Veterans General Hospital, Taipei 112201, Taiwan
- Department of Orthopedics, China Medical University Hospital, Taichung 40402, Taiwan
- Center for Translational Genomics & Regenerative Medicine Research, China Medical University Hospital, Taichung 40402, Taiwan
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Li Y, Fu Y, Liu Y, Zhao D, Liu L, Bourouis S, Algarni AD, Zhong C, Wu P. An optimized machine learning method for predicting wogonin therapy for the treatment of pulmonary hypertension. Comput Biol Med 2023; 164:107293. [PMID: 37591162 DOI: 10.1016/j.compbiomed.2023.107293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2023] [Revised: 06/25/2023] [Accepted: 07/28/2023] [Indexed: 08/19/2023]
Abstract
Human health is at risk from pulmonary hypertension (PH), characterized by decreased pulmonary vascular resistance and constriction of the pulmonary vessels, resulting in right heart failure and dysfunction. Thus, preventing PH and monitoring its progression before treating it is vital. Wogonin, derived from the leaves of Scutellaria baicalensis Georgi, exhibits remarkable pharmacological activity. In this study, we examined the effectiveness of wogonin in mitigating the progression of PH in mice using right heart catheterization and hematoxylin-eosin (HE) staining. As an alternative to minimize the possibility of harming small animals, we present a scientifically effective feature selection method (BSCDWOA-KELM) that will allow us to develop a novel simpler noninvasive prediction method for wogonin in treating PH. In this method, we use the proposed enhanced whale optimizer (SCDWOA) in conjunction with the kernel extreme learning machine (KELM). Initially, we let SCDWOA perform global optimization experiments on the IEEE CEC2014 benchmark function set to verify its core advantages. Lastly, 12 public and PH datasets are examined for feature selection experiments using BSCDWOA-KELM. As shown in the experimental results for global optimization, the proposed SCDWOA has better convergence performance. Meanwhile, the proposed binary SCDWOA (BSCDWOA) significantly improves the ability of KELM to classify data. By utilizing the BSCDWOA-KELM, key indicators such as the Red blood cell (RBC), the Haemoglobin (HGB), the Lymphocyte percentage (LYM%), the Hematocrit (HCT), and the Red blood cell distribution width-size distribution (RDW-SD) can be efficiently screened in the Pulmonary hypertension dataset, and one of its most essential points is its accuracy of greater than 0.98. Consequently, the BSCDWOA-KELM introduced in this study can be used to predict wogonin therapy for treating pulmonary hypertension in a simple and noninvasive manner.
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Affiliation(s)
- Yupeng Li
- College of Computer Science and Technology, Changchun Normal University, Changchun, Jilin 130032, China.
| | - Yujie Fu
- Department of Pulmonary and Critical Care Medicine, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou 325000, China.
| | - Yining Liu
- Department of Pulmonary and Critical Care Medicine, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou 325000, China.
| | - Dong Zhao
- College of Computer Science and Technology, Changchun Normal University, Changchun, Jilin 130032, China.
| | - Lei Liu
- College of Computer Science, Sichuan University, Chengdu, Sichuan 610065, China.
| | - Sami Bourouis
- Department of Information Technology, College of Computers and Information Technology, Taif University, P.O.Box 11099, Taif 21944, Saudi Arabia.
| | - Abeer D Algarni
- Department of Information Technology, College of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia.
| | - Chuyue Zhong
- The First Clinical College, Wenzhou Medical University, Wenzhou 325000, China.
| | - Peiliang Wu
- Department of Pulmonary and Critical Care Medicine, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou 325000, China.
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Santosh KC, GhoshRoy D, Nakarmi S. A Systematic Review on Deep Structured Learning for COVID-19 Screening Using Chest CT from 2020 to 2022. Healthcare (Basel) 2023; 11:2388. [PMID: 37685422 PMCID: PMC10486542 DOI: 10.3390/healthcare11172388] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Revised: 08/16/2023] [Accepted: 08/22/2023] [Indexed: 09/10/2023] Open
Abstract
The emergence of the COVID-19 pandemic in Wuhan in 2019 led to the discovery of a novel coronavirus. The World Health Organization (WHO) designated it as a global pandemic on 11 March 2020 due to its rapid and widespread transmission. Its impact has had profound implications, particularly in the realm of public health. Extensive scientific endeavors have been directed towards devising effective treatment strategies and vaccines. Within the healthcare and medical imaging domain, the application of artificial intelligence (AI) has brought significant advantages. This study delves into peer-reviewed research articles spanning the years 2020 to 2022, focusing on AI-driven methodologies for the analysis and screening of COVID-19 through chest CT scan data. We assess the efficacy of deep learning algorithms in facilitating decision making processes. Our exploration encompasses various facets, including data collection, systematic contributions, emerging techniques, and encountered challenges. However, the comparison of outcomes between 2020 and 2022 proves intricate due to shifts in dataset magnitudes over time. The initiatives aimed at developing AI-powered tools for the detection, localization, and segmentation of COVID-19 cases are primarily centered on educational and training contexts. We deliberate on their merits and constraints, particularly in the context of necessitating cross-population train/test models. Our analysis encompassed a review of 231 research publications, bolstered by a meta-analysis employing search keywords (COVID-19 OR Coronavirus) AND chest CT AND (deep learning OR artificial intelligence OR medical imaging) on both the PubMed Central Repository and Web of Science platforms.
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Affiliation(s)
- KC Santosh
- 2AI: Applied Artificial Intelligence Research Lab, Vermillion, SD 57069, USA
| | - Debasmita GhoshRoy
- School of Automation, Banasthali Vidyapith, Tonk 304022, Rajasthan, India;
| | - Suprim Nakarmi
- Department of Computer Science, University of South Dakota, Vermillion, SD 57069, USA;
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Wang X, Cheng L, Zhang D, Liu Z, Jiang L. Broad learning solution for rapid diagnosis of COVID-19. Biomed Signal Process Control 2023; 83:104724. [PMID: 36811035 PMCID: PMC9935280 DOI: 10.1016/j.bspc.2023.104724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Revised: 01/27/2023] [Accepted: 02/14/2023] [Indexed: 02/19/2023]
Abstract
COVID-19 has put all of humanity in a health dilemma as it spreads rapidly. For many infectious diseases, the delay of detection results leads to the spread of infection and an increase in healthcare costs. COVID-19 diagnostic methods rely on a large number of redundant labeled data and time-consuming data training processes to obtain satisfactory results. However, as a new epidemic, obtaining large clinical datasets is still challenging, which will inhibit the training of deep models. And a model that can really rapidly diagnose COVID-19 at all stages of the model has still not been proposed. To address these limitations, we combine feature attention and broad learning to propose a diagnostic system (FA-BLS) for COVID-19 pulmonary infection, which introduces a broad learning structure to address the slow diagnosis speed of existing deep learning methods. In our network, transfer learning is performed with ResNet50 convolutional modules with fixed weights to extract image features, and the attention mechanism is used to enhance feature representation. After that, feature nodes and enhancement nodes are generated by broad learning with random weights to adaptly select features for diagnosis. Finally, three publicly accessible datasets were used to evaluate our optimization model. It was determined that the FA-BLS model had a 26-130 times faster training speed than deep learning with a similar level of accuracy, which can achieve a fast and accurate diagnosis, achieve effective isolation from COVID-19 and the proposed method also opens up a new method for other types of chest CT image recognition problems.
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Affiliation(s)
- Xiaowei Wang
- School of Physical Science and Technology, Shenyang Normal University, Shenyang, 110034, China
| | - Liying Cheng
- School of Physical Science and Technology, Shenyang Normal University, Shenyang, 110034, China
| | - Dan Zhang
- Navigation College, Dalian Maritime University, Dalian, 116026, China
| | - Zuchen Liu
- School of Physical Science and Technology, Shenyang Normal University, Shenyang, 110034, China
| | - Longtao Jiang
- School of Physical Science and Technology, Shenyang Normal University, Shenyang, 110034, China
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Emara HM, Shoaib MR, El-Shafai W, Elwekeil M, Hemdan EED, Fouda MM, Taha TE, El-Fishawy AS, El-Rabaie ESM, El-Samie FEA. Simultaneous Super-Resolution and Classification of Lung Disease Scans. Diagnostics (Basel) 2023; 13:diagnostics13071319. [PMID: 37046537 PMCID: PMC10093568 DOI: 10.3390/diagnostics13071319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Revised: 03/17/2023] [Accepted: 03/20/2023] [Indexed: 04/05/2023] Open
Abstract
Acute lower respiratory infection is a leading cause of death in developing countries. Hence, progress has been made for early detection and treatment. There is still a need for improved diagnostic and therapeutic strategies, particularly in resource-limited settings. Chest X-ray and computed tomography (CT) have the potential to serve as effective screening tools for lower respiratory infections, but the use of artificial intelligence (AI) in these areas is limited. To address this gap, we present a computer-aided diagnostic system for chest X-ray and CT images of several common pulmonary diseases, including COVID-19, viral pneumonia, bacterial pneumonia, tuberculosis, lung opacity, and various types of carcinoma. The proposed system depends on super-resolution (SR) techniques to enhance image details. Deep learning (DL) techniques are used for both SR reconstruction and classification, with the InceptionResNetv2 model used as a feature extractor in conjunction with a multi-class support vector machine (MCSVM) classifier. In this paper, we compare the proposed model performance to those of other classification models, such as Resnet101 and Inceptionv3, and evaluate the effectiveness of using both softmax and MCSVM classifiers. The proposed system was tested on three publicly available datasets of CT and X-ray images and it achieved a classification accuracy of 98.028% using a combination of SR and InceptionResNetv2. Overall, our system has the potential to serve as a valuable screening tool for lower respiratory disorders and assist clinicians in interpreting chest X-ray and CT images. In resource-limited settings, it can also provide a valuable diagnostic support.
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Affiliation(s)
- Heba M. Emara
- Department of Electronics and Communications Engineering, High Institute of Electronic Engineering, Ministry of Higher Education, Bilbis-Sharqiya 44621, Egypt
| | - Mohamed R. Shoaib
- School of Computer Science and Engineering (SCSE), Nanyang Technological University (NTU), Singapore 639798, Singapore
| | - Walid El-Shafai
- Security Engineering Lab, Computer Science Department, Prince Sultan University, Riyadh 11586, Saudi Arabia
- Department of Electronics and Electrical Communications Engineering, Faculty of Electronic Engineering, Menoufia University, Menouf 32952, Egypt
| | - Mohamed Elwekeil
- Department of Electronics and Electrical Communications Engineering, Faculty of Electronic Engineering, Menoufia University, Menouf 32952, Egypt
| | - Ezz El-Din Hemdan
- Department of Computer Science and Engineering, Faculty of Electronic Engineering, Menoufia University, Menouf 32952, Egypt
| | - Mostafa M. Fouda
- Department of Electrical and Computer Engineering, Idaho State University, Pocatello, ID 83209, USA
| | - Taha E. Taha
- Department of Electronics and Electrical Communications Engineering, Faculty of Electronic Engineering, Menoufia University, Menouf 32952, Egypt
| | - Adel S. El-Fishawy
- Department of Electronics and Electrical Communications Engineering, Faculty of Electronic Engineering, Menoufia University, Menouf 32952, Egypt
| | - El-Sayed M. El-Rabaie
- Department of Electronics and Electrical Communications Engineering, Faculty of Electronic Engineering, Menoufia University, Menouf 32952, Egypt
| | - Fathi E. Abd El-Samie
- Department of Electronics and Electrical Communications Engineering, Faculty of Electronic Engineering, Menoufia University, Menouf 32952, Egypt
- Department of Information Technology, College of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, Riyadh 11564, Saudi Arabia
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Lan Y, Guo Y, Chen Q, Lin S, Chen Y, Deng X. Visual question answering model for fruit tree disease decision-making based on multimodal deep learning. FRONTIERS IN PLANT SCIENCE 2023; 13:1064399. [PMID: 36684756 PMCID: PMC9849817 DOI: 10.3389/fpls.2022.1064399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Accepted: 12/02/2022] [Indexed: 06/17/2023]
Abstract
Visual Question Answering (VQA) about diseases is an essential feature of intelligent management in smart agriculture. Currently, research on fruit tree diseases using deep learning mainly uses single-source data information, such as visible images or spectral data, yielding classification and identification results that cannot be directly used in practical agricultural decision-making. In this study, a VQA model for fruit tree diseases based on multimodal feature fusion was designed. Fusing images and Q&A knowledge of disease management, the model obtains the decision-making answer by querying questions about fruit tree disease images to find relevant disease image regions. The main contributions of this study were as follows: (1) a multimodal bilinear factorized pooling model using Tucker decomposition was proposed to fuse the image features with question features: (2) a deep modular co-attention architecture was explored to simultaneously learn the image and question attention to obtain richer graphical features and interactivity. The experiments showed that the proposed unified model combining the bilinear model and co-attentive learning in a new network architecture obtained 86.36% accuracy in decision-making under the condition of limited data (8,450 images and 4,560k Q&A pairs of data), outperforming existing multimodal methods. The data augmentation is adopted on the training set to avoid overfitting. Ten runs of 10-fold cross-validation are used to report the unbiased performance. The proposed multimodal fusion model achieved friendly interaction and fine-grained identification and decision-making performance. Thus, the model can be widely deployed in intelligent agriculture.
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Affiliation(s)
- Yubin Lan
- College of Electronic Engineering, College of Artificial Intelligence, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
- National Center for International Collaboration Research on Precision Agricultural Aviation Pesticide Spraying Technology, Guangzhou, China
- Guangdong Engineering Technology Research Center of Smart Agriculture, Guangzhou, China
| | - Yaqi Guo
- College of Electronic Engineering, College of Artificial Intelligence, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Qizhen Chen
- College of Electronic Engineering, College of Artificial Intelligence, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Shaoming Lin
- College of Electronic Engineering, College of Artificial Intelligence, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Yuntong Chen
- College of Electronic Engineering, College of Artificial Intelligence, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Xiaoling Deng
- College of Electronic Engineering, College of Artificial Intelligence, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
- National Center for International Collaboration Research on Precision Agricultural Aviation Pesticide Spraying Technology, Guangzhou, China
- Guangdong Engineering Technology Research Center of Smart Agriculture, Guangzhou, China
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Wang X, Yu G, Yan Z, Wan L, Wang W, Cui L. Lung Cancer Subtype Diagnosis by Fusing Image-Genomics Data and Hybrid Deep Networks. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2023; 20:512-523. [PMID: 34855599 DOI: 10.1109/tcbb.2021.3132292] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Accurate diagnosis of cancer subtypes is crucial for precise treatment, because different cancer subtypes are involved with different pathology and require different therapies. Although deep learning techniques have made great success in computer vision and other fields, they do not work well on Lung cancer subtype diagnosis, due to the distinction of slide images between different cancer subtypes is ambiguous. Furthermore, they often over-fit to high-dimensional genomics data with limited samples, and do not fuse the image and genomics data in a sensible way. In this paper, we propose a hybrid deep network based approach LungDIG for Lung cancer subtype Diagnosis by fusing Image-Genomics data. LungDIG first tiles the tissue slide image into small patches and extracts the patch-level features by fine-tuning an Inception-V3 model. Since the patches may contain some false positives in non-diagnostic regions, it further designs a patch-level feature combination strategy to integrate the extracted patch features and maintain the diversity between different cancer subtypes. At the same time, it extracts the genomics features from Copy Number Variation data by an attention based nonlinear extractor. Next, it fuses the image and genomics features by an attention based multilayer perceptron (MLP) to diagnose cancer subtype. Experiments on TCGA lung cancer data show that LungDIG can not only achieve higher accuracy for cancer subtype diagnosis than state-of-the-art methods, but also have a high authenticity and good interpretability.
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Wang W, Pei Y, Wang SH, Gorrz JM, Zhang YD. PSTCNN: Explainable COVID-19 diagnosis using PSO-guided self-tuning CNN. BIOCELL 2023; 47:373-384. [PMID: 36570878 PMCID: PMC7613982 DOI: 10.32604/biocell.2021.0xxx] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Since 2019, the coronavirus disease-19 (COVID-19) has been spreading rapidly worldwide, posing an unignorable threat to the global economy and human health. It is a disease caused by severe acute respiratory syndrome coronavirus 2, a single-stranded RNA virus of the genus Betacoronavirus. This virus is highly infectious and relies on its angiotensin-converting enzyme 2-receptor to enter cells. With the increase in the number of confirmed COVID-19 diagnoses, the difficulty of diagnosis due to the lack of global healthcare resources becomes increasingly apparent. Deep learning-based computer-aided diagnosis models with high generalisability can effectively alleviate this pressure. Hyperparameter tuning is essential in training such models and significantly impacts their final performance and training speed. However, traditional hyperparameter tuning methods are usually time-consuming and unstable. To solve this issue, we introduce Particle Swarm Optimisation to build a PSO-guided Self-Tuning Convolution Neural Network (PSTCNN), allowing the model to tune hyperparameters automatically. Therefore, the proposed approach can reduce human involvement. Also, the optimisation algorithm can select the combination of hyperparameters in a targeted manner, thus stably achieving a solution closer to the global optimum. Experimentally, the PSTCNN can obtain quite excellent results, with a sensitivity of 93.65%±1.86%, a specificity of 94.32%±2.07%, a precision of 94.30%±2.04%, an accuracy of 93.99%±1.78%, an F1-score of 93.97%±1.78%, Matthews Correlation Coefficient of 87.99%±3.56%, and Fowlkes-Mallows Index of 93.97%±1.78%. Our experiments demonstrate that compared to traditional methods, hyperparameter tuning of the model using an optimisation algorithm is faster and more effective.
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Affiliation(s)
- Wei Wang
- School of Computing and Mathematical, University of Leicester, Leicester, LE1 7RH, UK
| | - Yanrong Pei
- Huai’an Tongji Hospital, Huai’an, Jiangsu 223000, China
| | - Shui-Hua Wang
- School of Computing and Mathematical, University of Leicester, Leicester, LE1 7RH, UK
| | - Juan manuel Gorrz
- Department of Signal Theory, Networking and Communications, University of Granada, Granada, 52005, Spain
| | - Yu-Dong Zhang
- School of Computing and Mathematical, University of Leicester, Leicester, LE1 7RH, UK,Address correspondence to: Yu-Dong Zhang,
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Takateyama Y, Haruishi T, Hashimoto M, Otake Y, Akashi T, Shimizu A. Attention induction for a CT volume classification of COVID-19. Int J Comput Assist Radiol Surg 2023; 18:289-301. [PMID: 36251150 PMCID: PMC9574825 DOI: 10.1007/s11548-022-02769-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Accepted: 09/29/2022] [Indexed: 02/03/2023]
Abstract
PURPOSE This study proposes a method to draw attention toward the specific radiological findings of coronavirus disease 2019 (COVID-19) in CT images, such as bilaterality of ground glass opacity (GGO) and/or consolidation, in order to improve the classification accuracy of input CT images. METHODS We propose an induction mask that combines a similarity and a bilateral mask. A similarity mask guides attention to regions with similar appearances, and a bilateral mask induces attention to the opposite side of the lung to capture bilaterally distributed lesions. An induction mask for pleural effusion is also proposed in this study. ResNet18 with nonlocal blocks was trained by minimizing the loss function defined by the induction mask. RESULTS The four-class classification accuracy of the CT images of 1504 cases was 0.6443, where class 1 was the typical appearance of COVID-19 pneumonia, class 2 was the indeterminate appearance of COVID-19 pneumonia, class 3 was the atypical appearance of COVID-19 pneumonia, and class 4 was negative for pneumonia. The four classes were divided into two subgroups. The accuracy of COVID-19 and pneumonia classifications was evaluated, which were 0.8205 and 0.8604, respectively. The accuracy of the four-class and COVID-19 classifications improved when attention was paid to pleural effusion. CONCLUSION The proposed attention induction method was effective for the classification of CT images of COVID-19 patients. Improvement of the classification accuracy of class 3 by focusing on features specific to the class remains a topic for future work.
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Affiliation(s)
- Yusuke Takateyama
- grid.136594.c0000 0001 0689 5974Institute of Engineering, Tokyo University of Agriculture and Technology, Koganei, Tokyo, Japan
| | - Takahito Haruishi
- grid.136594.c0000 0001 0689 5974Institute of Engineering, Tokyo University of Agriculture and Technology, Koganei, Tokyo, Japan
| | - Masahiro Hashimoto
- grid.26091.3c0000 0004 1936 9959Department of Radiology, Keio University school of Medicine, Shinjuku-ku, Tokyo, Japan
| | - Yoshito Otake
- grid.260493.a0000 0000 9227 2257Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma-shi, Nara, Japan
| | - Toshiaki Akashi
- grid.258269.20000 0004 1762 2738Department of Radiology, Juntendo University, Bunkyo-ku, Tokyo, Japan
| | - Akinobu Shimizu
- grid.136594.c0000 0001 0689 5974Institute of Engineering, Tokyo University of Agriculture and Technology, Koganei, Tokyo, Japan
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Saad MH, Hashima S, Sayed W, El-Shazly EH, Madian AH, Fouda MM. Early Diagnosis of COVID-19 Images Using Optimal CNN Hyperparameters. Diagnostics (Basel) 2022; 13:diagnostics13010076. [PMID: 36611368 PMCID: PMC9818649 DOI: 10.3390/diagnostics13010076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Revised: 12/13/2022] [Accepted: 12/19/2022] [Indexed: 12/29/2022] Open
Abstract
Coronavirus disease (COVID-19) is a worldwide epidemic that poses substantial health hazards. However, COVID-19 diagnostic test sensitivity is still restricted due to abnormalities in specimen processing. Meanwhile, optimizing the highly defined number of convolutional neural network (CNN) hyperparameters (hundreds to thousands) is a useful direction to improve its overall performance and overcome its cons. Hence, this paper proposes an optimization strategy for obtaining the optimal learning rate and momentum of a CNN's hyperparameters using the grid search method to improve the network performance. Therefore, three alternative CNN architectures (GoogleNet, VGG16, and ResNet) were used to optimize hyperparameters utilizing two different COVID-19 radiography data sets (Kaggle (X-ray) and China national center for bio-information (CT)). These architectures were tested with/without optimizing the hyperparameters. The results confirm effective disease classification using the CNN structures with optimized hyperparameters. Experimental findings indicate that the new technique outperformed the previous in terms of accuracy, sensitivity, specificity, recall, F-score, false positive and negative rates, and error rate. At epoch 25, the optimized Resnet obtained high classification accuracy, reaching 98.98% for X-ray images and 98.78% for CT images.
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Affiliation(s)
- Mohamed H. Saad
- Radiation Engineering Department, National Center for Radiation Research and Technology (NCRRT), Egyptian Atomic Energy Authority, Cairo 11787, Egypt
| | - Sherief Hashima
- Engineering Department, Nuclear Research Center (NRC), Egyptian Atomic Energy Authority, Cairo 13759, Egypt
- Correspondence: ; Tel.: +20-10-94230077
| | - Wessam Sayed
- Radiation Engineering Department, National Center for Radiation Research and Technology (NCRRT), Egyptian Atomic Energy Authority, Cairo 11787, Egypt
| | - Ehab H. El-Shazly
- Radiation Engineering Department, National Center for Radiation Research and Technology (NCRRT), Egyptian Atomic Energy Authority, Cairo 11787, Egypt
| | - Ahmed H. Madian
- Radiation Engineering Department, National Center for Radiation Research and Technology (NCRRT), Egyptian Atomic Energy Authority, Cairo 11787, Egypt
| | - Mostafa M. Fouda
- Department of Electrical and Computer Engineering, Idaho State University, Pocatello, ID 83209, USA
- Department of Electrical Engineering, Faculty of Engineering at Shoubra, Benha University, Cairo 11672, Egypt
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Dubey AK, Mohbey KK. Combined Cloud-Based Inference System for the Classification of COVID-19 in CT-Scan and X-Ray Images. NEW GENERATION COMPUTING 2022; 41:61-84. [PMID: 36439302 PMCID: PMC9676871 DOI: 10.1007/s00354-022-00195-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Accepted: 11/09/2022] [Indexed: 06/16/2023]
Abstract
In the past few years, most of the work has been done around the classification of covid-19 using different images like CT-scan, X-ray, and ultrasound. But none of that is capable enough to deal with each of these image types on a single common platform and can identify the possibility that a person is suffering from COVID or not. Thus, we realized there should be a platform to identify COVID-19 in CT-scan and X-ray images on the fly. So, to fulfill this need, we proposed an AI model to identify CT-scan and X-ray images from each other and then use this inference to classify them of COVID positive or negative. The proposed model uses the inception architecture under the hood and trains on the open-source extended covid-19 dataset. The dataset consists of plenty of images for both image types and is of size 4 GB. We achieved an accuracy of 100%, average macro-Precision of 100%, average macro-Recall of 100%, average macro f1-score of 100%, and AUC score of 99.6%. Furthermore, in this work, cloud-based architecture is proposed to massively scale and load balance as the Number of user requests rises. As a result, it will deliver a service with minimal latency to all users.
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Affiliation(s)
- Ankit Kumar Dubey
- Department of Computer Science, Central University of Rajasthan, Ajmer, India
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12
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Dar JA, Srivastava KK, Ahmed Lone S. Design and development of hybrid optimization enabled deep learning model for COVID-19 detection with comparative analysis with DCNN, BIAT-GRU, XGBoost. Comput Biol Med 2022; 150:106123. [PMID: 36228465 PMCID: PMC9527202 DOI: 10.1016/j.compbiomed.2022.106123] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Revised: 09/03/2022] [Accepted: 09/17/2022] [Indexed: 11/03/2022]
Abstract
The recent investigation has started for evaluating the human respiratory sounds, like voice recorded, cough, and breathing from hospital confirmed Covid-19 tools, which differs from healthy person's sound. The cough-based detection of Covid-19 also considered with non-respiratory and respiratory sounds data related with all declared situations. Covid-19 is respiratory disease, which is usually produced by Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2). However, it is more indispensable to detect the positive cases for reducing further spread of virus, and former treatment of affected patients. With constant rise in the COVID-19 cases, there has been a constant rise in the need of efficient and safe ways to detect an infected individual. With the cases multiplying constantly, the current detecting devices like RT-PCR and fast testing kits have become short in supply. An effectual Covid-19 detection model using devised hybrid Honey Badger Optimization-based Deep Neuro Fuzzy Network (HBO-DNFN) is developed in this paper. Here, the audio signal is considered as input for detecting Covid-19. The gaussian filter is applied to input signal for removing the noises and then feature extraction is performed. The substantial features, like spectral roll-off, spectral bandwidth, Mel frequency cepstral coefficients (MFCC), spectral flatness, zero crossing rate, spectral centroid, mean square energy and spectral contract are extracted for further processing. Finally, DNFN is applied for detecting Covid-19 and the deep leaning model is trained by designed hybrid HBO algorithm. Accordingly, the developed Hybrid HBO method is newly designed by incorporating Honey Badger optimization Algorithm (HBA) and Jaya algorithm. The performance of developed Covid-19 detection model is evaluated using three metrics, like testing accuracy, sensitivity and specificity. The developed Hybrid HBO-based DNFN is outpaced than other existing approaches in terms of testing accuracy, sensitivity and specificity of "0.9176, 0.9218 and 0. 9219". All the test results are validated with the k-fold cross validation method in order to make an assessment of the generalizability of these results. When k-fold value is 9, sensitivity of existing techniques and developed JHBO-based DNFN is 0.8982, 0.8816, 0.8938, and 0.9207. The sensitivity of developed approach is improved by means of gaussian filtering model. The specificity of DCNN is 0.9125, BI-AT-GRU is 0.8926, and XGBoost is 0.9014, while developed JHBO-based DNFN is 0.9219 in k-fold value 9.
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Affiliation(s)
- Jawad Ahmad Dar
- Department of Computer Science and Engineering, Mansarovar Global University, Madhya Pradesh, India.
| | - Kamal Kr Srivastava
- Department of Computer Science and Engineering, Mansarovar Global University, Madhya Pradesh, India.
| | - Sajaad Ahmed Lone
- Department of Computer Science and Engineering, Islamic University of Science and Technology, Kashmir, India.
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13
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Liu J, Tian Y, Duzgol C, Akin O, Ağıldere AM, Haberal KM, Coşkun M. Virtual contrast enhancement for CT scans of abdomen and pelvis. Comput Med Imaging Graph 2022; 100:102094. [PMID: 35914340 PMCID: PMC10227907 DOI: 10.1016/j.compmedimag.2022.102094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Revised: 06/07/2022] [Accepted: 06/16/2022] [Indexed: 11/19/2022]
Abstract
Contrast agents are commonly used to highlight blood vessels, organs, and other structures in magnetic resonance imaging (MRI) and computed tomography (CT) scans. However, these agents may cause allergic reactions or nephrotoxicity, limiting their use in patients with kidney dysfunctions. In this paper, we propose a generative adversarial network (GAN) based framework to automatically synthesize contrast-enhanced CTs directly from the non-contrast CTs in the abdomen and pelvis region. The respiratory and peristaltic motion can affect the pixel-level mapping of contrast-enhanced learning, which makes this task more challenging than other body parts. A perceptual loss is introduced to compare high-level semantic differences of the enhancement areas between the virtual contrast-enhanced and actual contrast-enhanced CT images. Furthermore, to accurately synthesize the intensity details as well as remain texture structures of CT images, a dual-path training schema is proposed to learn the texture and structure features simultaneously. Experiment results on three contrast phases (i.e. arterial, portal, and delayed phase) show the potential to synthesize virtual contrast-enhanced CTs directly from non-contrast CTs of the abdomen and pelvis for clinical evaluation.
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Affiliation(s)
- Jingya Liu
- The City College of New York, New York, NY 10031, USA
| | - Yingli Tian
- The City College of New York, New York, NY 10031, USA.
| | - Cihan Duzgol
- Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA
| | - Oguz Akin
- Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
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14
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Aiadi O, Khaldi B. A fast lightweight network for the discrimination of COVID-19 and pulmonary diseases. Biomed Signal Process Control 2022; 78:103925. [PMID: 35755317 PMCID: PMC9212881 DOI: 10.1016/j.bspc.2022.103925] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2022] [Revised: 05/17/2022] [Accepted: 06/18/2022] [Indexed: 11/23/2022]
Abstract
With the outbreak of COVID-19 and the increasing number of infections worldwide, there has been a noticeable deficiency in healthcare provided by medical professionals. To cope with this situation, computational methods can be used in different steps of COVID-19 handling. The first step is to accurately and rapidly diagnose infected persons, because the time taken for the diagnosis is among the crucial factors to save human lives. This paper proposes a computationally fast network for the diagnosis of COVID-19 and pulmonary diseases, which can be used in telemedicine. The proposed network is called DLNet because it jointly encodes local binary patterns along with filter outputs of discrete cosine transform (DCT). The first layer in DLNet is the convolution layer in which the input image is convolved using DCT filters. Then, to avoid over-fitting, a binary hashing procedure is performed by fusing responses of different filters into a unique feature map. This map is used to generate block-wise histograms by binding local binary codes of the input image and the map values. We normalize these histograms to improve the robustness of the network against illumination changes. Experiments conducted on a public dataset demonstrate the rapidity and effectiveness of DLNet, where an average accuracy, sensitivity, and specificity of 98.86%, 98.06, and 99.24% have been achieved, respectively. Moreover, the proposed network has shown high tolerance to the missing parts in the medical image, which makes it suitable for the telemedicine scenario.
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Affiliation(s)
- Oussama Aiadi
- Artifcial Intelligence and Information Technology Laboratory (LINATI), Department of Computer Science and Information Technology, Faculty of Sciences and Technology, University of Kasdi Merbah, Ouargla 3000, Algeria
| | - Belal Khaldi
- Artifcial Intelligence and Information Technology Laboratory (LINATI), Department of Computer Science and Information Technology, Faculty of Sciences and Technology, University of Kasdi Merbah, Ouargla 3000, Algeria
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15
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Oğuz Ç, Yağanoğlu M. Detection of COVID-19 using deep learning techniques and classification methods. Inf Process Manag 2022; 59:103025. [PMID: 35821878 PMCID: PMC9263717 DOI: 10.1016/j.ipm.2022.103025] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Revised: 07/01/2022] [Accepted: 07/02/2022] [Indexed: 01/07/2023]
Abstract
Since the patient is not quarantined during the conclusion of the Polymerase Chain Reaction (PCR) test used in the diagnosis of COVID-19, the disease continues to spread. In this study, it was aimed to reduce the duration and amount of transmission of the disease by shortening the diagnosis time of COVID-19 patients with the use of Computed Tomography (CT). In addition, it is aimed to provide a decision support system to radiologists in the diagnosis of COVID-19. In this study, deep features were extracted with deep learning models such as ResNet-50, ResNet-101, AlexNet, Vgg-16, Vgg-19, GoogLeNet, SqueezeNet, Xception on 1345 CT images obtained from the radiography database of Siirt Education and Research Hospital. These deep features are given to classification methods such as Support Vector Machine (SVM), k Nearest Neighbor (kNN), Random Forest (RF), Decision Trees (DT), Naive Bayes (NB), and their performance is evaluated with test images. Accuracy value, F1-score and ROC curve were considered as success criteria. According to the data obtained as a result of the application, the best performance was obtained with ResNet-50 and SVM method. The accuracy was 96.296%, the F1-score was 95.868%, and the AUC value was 0.9821. The deep learning model and classification method examined in this study and found to be high performance can be used as an auxiliary decision support system by preventing unnecessary tests for COVID-19 disease.
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Affiliation(s)
- Çinare Oğuz
- Department of Computer Engineering, Faculty of Engineering, Ataturk University, Erzurum, Turkey
| | - Mete Yağanoğlu
- Department of Computer Engineering, Faculty of Engineering, Ataturk University, Erzurum, Turkey
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16
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Learning Discriminated Features Based on Feature Pyramid Networks and Attention for Multi-scale Object Detection. Cognit Comput 2022. [DOI: 10.1007/s12559-022-10052-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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17
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Avuçlu E. A novel method using Covid-19 dataset and machine learning algorithms FOR THE MOST ACCURATE DIAGNOSIS that can be obtained in medical diagnosis. Biomed Signal Process Control 2022; 77:103836. [PMID: 35663432 PMCID: PMC9148930 DOI: 10.1016/j.bspc.2022.103836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Revised: 05/05/2022] [Accepted: 05/27/2022] [Indexed: 11/25/2022]
Abstract
Pandemics and many other diseases threaten human life, health and quality of life by affecting many aspects. For this reason, the medical diagnosis to be applied for any disease is important in terms of the most accurate determination by the doctors and the appropriate treatment for the determined diagnosis. The COVID-19 pandemic that started in China in December 2019 spread all over the world in a short time. Researchers have begun to do different studies to make the most accurate diagnosis of COVID-19. Due to the rapid spread of COVID-19, doctors in the health sector of many countries were also caught off guard. Machine Learning Algorithms (MLAs) are of great importance in the development of computer-aided early and accurate diagnosis systems in today's medical field, as they greatly assist doctors in the medical diagnosis process. In this study, a method was proposed for the most accurate diagnosis of COVID-19 patients using the COVID-19 image data. Images were first standardized and features extracted using RGB values of 800x800 images, and these features were used in train and test processes for MLAs. 5 different MLAs were used in experimental studies using statistical measurements (k Nearest Neighbor (k-NN), Decision Tree (DT), Multinominal Logistic Regression (MLR), Naive Bayes (NB) and Support Vector Machine (SVM)). A method was proposed that automatically finds the highest classification success that these algorithms can achieve. In experimental studies, the following accuracy rates were obtained in train operations for MLAs, respectively; 1, 1, 1, 0.69565, 0.92753. Accuracy results in test operations were obtained as follows; 0.85714, 0.79591, 0.91836, 0.61224, 0.89795. After the application of the proposed method, the test success rate for MLR increased from 0.91 to 0.98. As a result of applying the proposed algorithm, more accurate results were obtained. The results obtained were given in the experimental studies section in detail. The results obtained proved to be very promising. According to the results, it was seen that the proposed method could be used effectively in future studies.
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18
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Sharma A, Singh K, Koundal D. A novel fusion based convolutional neural network approach for classification of COVID-19 from chest X-ray images. Biomed Signal Process Control 2022; 77:103778. [PMID: 35530169 PMCID: PMC9057938 DOI: 10.1016/j.bspc.2022.103778] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Revised: 04/09/2022] [Accepted: 04/27/2022] [Indexed: 01/31/2023]
Abstract
Coronavirus disease is a viral infection caused by a novel coronavirus (CoV) which was first identified in the city of Wuhan, China somewhere in the early December 2019. It affects the human respiratory system by causing respiratory infections with symptoms (mild to severe) like fever, cough, and weakness but can further lead to other serious diseases and has resulted in millions of deaths until now. Therefore, an accurate diagnosis for such types of diseases is highly needful for the current healthcare system. In this paper, a state of the art deep learning method is described. We propose COVDC-Net, a Deep Convolutional Network-based classification method which is capable of identifying SARS-CoV-2 infected amongst healthy and/or pneumonia patients from their chest X-ray images. The proposed method uses two modified pre-trained models (on ImageNet) namely MobileNetV2 and VGG16 without their classifier layers and fuses the two models using the Confidence fusion method to achieve better classification accuracy on the two currently publicly available datasets. It is observed through exhaustive experiments that the proposed method achieved an overall classification accuracy of 96.48% for 3-class (COVID-19, Normal and Pneumonia) classification tasks. For 4-class classification (COVID-19, Normal, Pneumonia Viral, and Pneumonia Bacterial) COVDC-Net method delivered 90.22% accuracy. The experimental results demonstrate that the proposed COVDC-Net method has shown better overall classification accuracy as compared to the existing deep learning methods proposed for the same task in the current COVID-19 pandemic.
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Affiliation(s)
- Anubhav Sharma
- Computer Science and Engineering Department, Thapar Institute of Engineering and Technology, Patiala, Punjab, India,Corresponding authors
| | - Karamjeet Singh
- Computer Science and Engineering Department, Thapar Institute of Engineering and Technology, Patiala, Punjab, India,Corresponding authors
| | - Deepika Koundal
- Department of Virtualization, School of Computer Science, University of Petroleum & Energy Studies, Dehradun, Uttrakhand, India
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19
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Huang ML, Liao YC. A lightweight CNN-based network on COVID-19 detection using X-ray and CT images. Comput Biol Med 2022; 146:105604. [PMID: 35576824 PMCID: PMC9090861 DOI: 10.1016/j.compbiomed.2022.105604] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Revised: 05/03/2022] [Accepted: 05/08/2022] [Indexed: 01/17/2023]
Abstract
BACKGROUND AND OBJECTIVES The traditional method of detecting COVID-19 disease mainly rely on the interpretation of computer tomography (CT) or X-ray images (X-ray) by doctors or professional researchers to identify whether it is COVID-19 disease, which is easy to cause identification mistakes. In this study, the technology of convolutional neural network is expected to be able to efficiently and accurately identify the COVID-19 disease. METHODS This study uses and fine-tunes seven convolutional neural networks including InceptionV3, ResNet50V2, Xception, DenseNet121, MobileNetV2, EfficientNet-B0, and EfficientNetV2 on COVID-19 detection. In addition, we proposes a lightweight convolutional neural network, LightEfficientNetV2, on small number of chest X-ray and CT images. Five-fold cross-validation was used to evaluate the performance of each model. To confirm the performance of the proposed model, LightEfficientNetV2 was carried out on three different datasets (NIH Chest X-rays, SARS-CoV-2 and COVID-CT). RESULTS On chest X-ray image dataset, the highest accuracy 96.50% was from InceptionV3 before fine-tuning; and the highest accuracy 97.73% was from EfficientNetV2 after fine-tuning. The accuracy of the LightEfficientNetV2 model proposed in this study is 98.33% on chest X-ray image. On CT images, the best transfer learning model before fine-tuning is MobileNetV2, with an accuracy of 94.46%; the best transfer learning model after fine-tuning is Xception, with an accuracy of 96.78%. The accuracy of the LightEfficientNetV2 model proposed in this study is 97.48% on CT image. CONCLUSIONS Compared with the SOTA, LightEfficientNetV2 proposed in this study demonstrates promising performance on chest X-ray images, CT images and three different datasets.
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20
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Bao Z, Zheng Y, Li X, Huo Y, Zhao G, Zhang F, Li X, Xu P, Liu W, Han H. A simple pre-disease state prediction method based on variations of gene vector features. Comput Biol Med 2022; 148:105890. [DOI: 10.1016/j.compbiomed.2022.105890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 06/27/2022] [Accepted: 07/16/2022] [Indexed: 11/24/2022]
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21
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Aiadi O, Khaldi B, Saadeddine C. MDFNet: an unsupervised lightweight network for ear print recognition. JOURNAL OF AMBIENT INTELLIGENCE AND HUMANIZED COMPUTING 2022; 14:1-14. [PMID: 35757492 PMCID: PMC9206135 DOI: 10.1007/s12652-022-04028-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Accepted: 05/30/2022] [Indexed: 06/15/2023]
Abstract
In this paper, we propose an unsupervised lightweight network with a single layer for ear print recognition. We refer to this method by MDFNet because it relies on gradient Magnitude and Direction alongside with responses of data-driven Filters. At first, we align ear using Convolution Neural Network (CNN) and Principal Component Analysis (PCA). MDFNet starts by generating a filter bank from training images using PCA. This is followed by a twofold layer, which comprises two operations namely convolution using learned filters and computation of gradient image. To prevent over-fitting, a binary hashing process is done by combining different filter responses into a single feature map. Then, we separately construct histograms for each of gradient magnitude and direction according to the feature map. These histograms are then normalized, using power-L2 rule, to cope with illumination disparity. Several fusion rules are evaluated to combine the two histograms. The main novelty of MDFNet lies in its simple architecture, effectiveness, the good compromise between processing time and performance it provides along with its high robustness to occlusion. We conduct extensive experiments on three public datasets namely AWE, AMI and IIT Delhi II. Experimental results demonstrate the effectiveness of MDFNet, which achieves high recognition rates (82.5%, 97.67% and 98.96%, respectively), and outperformed several state of the art methods with a high robustness to occlusion. Experiments revealed also the actual need for considering ear alignment.
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Affiliation(s)
- Oussama Aiadi
- LINATI Laboratory, Department of Computer Science and Information Technology, University of Kasdi Merbah, 30000 Ouargla, Algeria
| | - Belal Khaldi
- LINATI Laboratory, Department of Computer Science and Information Technology, University of Kasdi Merbah, 30000 Ouargla, Algeria
| | - Cheraa Saadeddine
- LINATI Laboratory, Department of Computer Science and Information Technology, University of Kasdi Merbah, 30000 Ouargla, Algeria
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22
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COVLIAS 2.0-cXAI: Cloud-Based Explainable Deep Learning System for COVID-19 Lesion Localization in Computed Tomography Scans. Diagnostics (Basel) 2022; 12:diagnostics12061482. [PMID: 35741292 PMCID: PMC9221733 DOI: 10.3390/diagnostics12061482] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Revised: 06/07/2022] [Accepted: 06/13/2022] [Indexed: 02/07/2023] Open
Abstract
Background: The previous COVID-19 lung diagnosis system lacks both scientific validation and the role of explainable artificial intelligence (AI) for understanding lesion localization. This study presents a cloud-based explainable AI, the “COVLIAS 2.0-cXAI” system using four kinds of class activation maps (CAM) models. Methodology: Our cohort consisted of ~6000 CT slices from two sources (Croatia, 80 COVID-19 patients and Italy, 15 control patients). COVLIAS 2.0-cXAI design consisted of three stages: (i) automated lung segmentation using hybrid deep learning ResNet-UNet model by automatic adjustment of Hounsfield units, hyperparameter optimization, and parallel and distributed training, (ii) classification using three kinds of DenseNet (DN) models (DN-121, DN-169, DN-201), and (iii) validation using four kinds of CAM visualization techniques: gradient-weighted class activation mapping (Grad-CAM), Grad-CAM++, score-weighted CAM (Score-CAM), and FasterScore-CAM. The COVLIAS 2.0-cXAI was validated by three trained senior radiologists for its stability and reliability. The Friedman test was also performed on the scores of the three radiologists. Results: The ResNet-UNet segmentation model resulted in dice similarity of 0.96, Jaccard index of 0.93, a correlation coefficient of 0.99, with a figure-of-merit of 95.99%, while the classifier accuracies for the three DN nets (DN-121, DN-169, and DN-201) were 98%, 98%, and 99% with a loss of ~0.003, ~0.0025, and ~0.002 using 50 epochs, respectively. The mean AUC for all three DN models was 0.99 (p < 0.0001). The COVLIAS 2.0-cXAI showed 80% scans for mean alignment index (MAI) between heatmaps and gold standard, a score of four out of five, establishing the system for clinical settings. Conclusions: The COVLIAS 2.0-cXAI successfully showed a cloud-based explainable AI system for lesion localization in lung CT scans.
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Zhao H, Fang Z, Ren J, MacLellan C, Xia Y, Li S, Sun M, Ren K. SC2Net: A Novel Segmentation-based Classification Network for Detection of COVID-19 in Chest X-ray Images. IEEE J Biomed Health Inform 2022; 26:4032-4043. [PMID: 35613061 DOI: 10.1109/jbhi.2022.3177854] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
The pandemic of COVID-19 has become a global crisis in public health, which has led to a massive number of deaths and severe economic degradation. To suppress the spread of COVID-19, accurate diagnosis at an early stage is crucial. As the popularly used real-time reverse transcriptase polymerase chain reaction (RT-PCR) swab test can be lengthy and inaccurate, chest screening with radiography imaging is still preferred. However, due to limited image data and the difficulty of the early-stage diagnosis, existing models suffer from ineffective feature extraction and poor network convergence and optimisation. To tackle these issues, a segmentation-based COVID-19 classification network, namely SC2Net, is proposed for effective detection of the COVID-19 from chest x-ray (CXR) images. The SC2Net consists of two subnets: a COVID-19 lung segmentation network (CLSeg), and a spatial attention network (SANet). In order to supress the interference from the background, the CLSeg is first applied to segment the lung region from the CXR. The segmented lung region is then fed to the SANet for classification and diagnosis of the COVID-19. As a shallow yet effective classifier, SANet takes the ResNet-18 as the feature extractor and enhances highlevel feature via the proposed spatial attention module. For performance evaluation, the COVIDGR 1.0 dataset is used, which is a high-quality dataset with various severity levels of the COVID-19. Experimental results have shown that, our SC2Net has an average accuracy of 84.23% and an average F1 score of 81.31% in detection of COVID-19, outperforming several state-of-the-art approaches.
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Lei J, Huang X, Huang H, Chu H, Wang J, Jiang X. The Internet of things technology in the rehabilitation for the disabled in China: A survey. EAI ENDORSED TRANSACTIONS ON INTERNET OF THINGS 2022. [DOI: 10.4108/eetiot.v8i29.988] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
According to the WORLD Disabled Persons federation (WPF), there are a large number of disabled people in the world, accounting for over 400 million in the Asia-Pacific region alone. This paper discusses the application of the Internet of Things technology in the rehabilitation of special populations, aiming at achieving high allocation of resources without changing personnel allocation, realizing innovation to improve economic benefits without changing personnel allocation, and rationally optimizing resource allocation to achieve maximum. Firstly, we give an overview of the Internet of Things technology and its application, and introduce the sensor, RFID, embedded system and other technologies. Then, we discuss the application of Internet of Things technology in the rehabilitation of disabled people, from the rehabilitation needs of disabled people and the application of Internet of Things technology in the field of rehabilitation. Then, from the statistical analysis of the application of Internet of Things technology in the rehabilitation field in the past 10 years, we obtained the shortcomings of the application of Internet of Things technology in the rehabilitation field and some space for further exploration. Finally, we believe that the application of Internet of Things technology to the rehabilitation management of persons with disabilities will be a breakthrough in the rehabilitation management of persons with disabilities, and have important reference value for the rehabilitation management of persons with disabilities worldwide. We also hope that understanding, respecting, caring and helping people with disabilities will increasingly become a global consensus and action.
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25
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Song D, Zhang W, Ren T, Chang X. Editorial paper for Pattern Recognition Letters VSI on Multi-view Representation Learning and Multi-modal Information Representation. Pattern Recognit Lett 2022. [DOI: 10.1016/j.patrec.2022.05.012] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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26
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Xu W, Cloutier RS. A facial expression recognizer using modified ResNet-152. EAI ENDORSED TRANSACTIONS ON INTERNET OF THINGS 2022. [DOI: 10.4108/eetiot.v7i28.685] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
In this age of artificial intelligence, facial expression recognition is an essential pool to describe emotion and psychology. In recent studies, many researchers have not achieved satisfactory results. This paper proposed an expression recognition system based on ResNet-152. Statistical analysis showed our method achieved 96.44% accuracy. Comparative experiments show that the model is better than mainstream models. In addition, we briefly described the application of facial expression recognition technology in the IoT (Internet of things).
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Zheng X, Cloutier RS. A Review of Image Classification Algorithms in IoT. EAI ENDORSED TRANSACTIONS ON INTERNET OF THINGS 2022. [DOI: 10.4108/eetiot.v7i28.562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
With the advent of big data era and the enhancement of computing power, Deep Learning has swept the world. Based on Convolutional Neural Network (CNN) image classification technique broke the restriction of classical image classification methods, becoming the dominant algorithm of image classification. How to use CNN for image classification has turned into a hot spot. After systematically studying convolutional neural network and in-depth research of the application of CNN in computer vision, this research briefly introduces the mainstream structural models, strengths and shortcomings, time/space complexity, challenges that may be suffered during model training and associated solutions for image classification. This research also compares and analyzes the differences between different methods and their performance on commonly used data sets. Finally, the shortcomings of Deep Learning methods in image classification and possible future research directions are discussed.
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Dual attention based network for skin lesion classification with auxiliary learning. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103549] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Asif S, Zhao M, Tang F, Zhu Y. A deep learning-based framework for detecting COVID-19 patients using chest X-rays. MULTIMEDIA SYSTEMS 2022; 28:1495-1513. [PMID: 35341212 PMCID: PMC8939400 DOI: 10.1007/s00530-022-00917-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Accepted: 03/09/2022] [Indexed: 06/02/2023]
Abstract
Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has caused outbreaks of new coronavirus disease (COVID-19) around the world. Rapid and accurate detection of COVID-19 coronavirus is an important step in limiting the spread of the COVID-19 epidemic. To solve this problem, radiography techniques (such as chest X-rays and computed tomography (CT)) can play an important role in the early prediction of COVID-19 patients, which will help to treat patients in a timely manner. We aimed to quickly develop a highly efficient lightweight CNN architecture for detecting COVID-19-infected patients. The purpose of this paper is to propose a robust deep learning-based system for reliably detecting COVID-19 from chest X-ray images. First, we evaluate the performance of various pre-trained deep learning models (InceptionV3, Xception, MobileNetV2, NasNet and DenseNet201) recently proposed for medical image classification. Second, a lightweight shallow convolutional neural network (CNN) architecture is proposed for classifying X-ray images of a patient with a low false-negative rate. The data set used in this work contains 2,541 chest X-rays from two different public databases, which have confirmed COVID-19 positive and healthy cases. The performance of the proposed model is compared with the performance of pre-trained deep learning models. The results show that the proposed shallow CNN provides a maximum accuracy of 99.68% and more importantly sensitivity, specificity and AUC of 99.66%, 99.70% and 99.98%. The proposed model has fewer parameters and low complexity compared to other deep learning models. The experimental results of our proposed method show that it is superior to the existing state-of-the-art methods. We believe that this model can help healthcare professionals to treat COVID-19 patients through improved and faster patient screening.
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Affiliation(s)
- Sohaib Asif
- School of Computer Science and Engineering, Central South University, Changsha, China
| | - Ming Zhao
- School of Computer Science and Engineering, Central South University, Changsha, China
| | - Fengxiao Tang
- School of Computer Science and Engineering, Central South University, Changsha, China
| | - Yusen Zhu
- School of Mathematics, Hunan University, Changsha, China
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Mary Shyni H, Chitra E. A COMPARATIVE STUDY OF X-RAY AND CT IMAGES IN COVID-19 DETECTION USING IMAGE PROCESSING AND DEEP LEARNING TECHNIQUES. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE UPDATE 2022; 2:100054. [PMID: 35281724 PMCID: PMC8898857 DOI: 10.1016/j.cmpbup.2022.100054] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
The deadly coronavirus has not just devastated the lives of millions but has put the entire healthcare system under tremendous pressure. Early diagnosis of COVID-19 plays a significant role in isolating the positive cases and preventing the further spread of the disease. The medical images along with deep learning models provided faster and more accurate results in the detection of COVID-19. This article extensively reviews the recent deep learning techniques for COVID-19 diagnosis. The research articles discussed reveal that Convolutional Neural Network (CNN) is the most popular deep learning algorithm in detecting COVID-19 from medical images. An overview of the necessity of pre-processing the medical images, transfer learning and data augmentation techniques to deal with data scarcity problems, use of pre-trained models to save time and the role of medical images in the automatic detection of COVID-19 are summarized. This article also provides a sensible outlook for the young researchers to develop highly effective CNN models coupled with medical images in the early detection of the disease.
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Affiliation(s)
- H Mary Shyni
- Department of Electronics and Communication Engineering, SRM Institute of Science and Technology, Kattankulathur, Chennai, Tamil Nadu, India
| | - E Chitra
- Department of Electronics and Communication Engineering, SRM Institute of Science and Technology, Kattankulathur, Chennai, Tamil Nadu, India
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Ali Ahmed SA, Yavuz MC, Şen MU, Gülşen F, Tutar O, Korkmazer B, Samancı C, Şirolu S, Hamid R, Eryürekli AE, Mammadov T, Yanikoglu B. Comparison and Ensemble of 2D and 3D Approaches for COVID-19 Detection in CT Images. Neurocomputing 2022; 488:457-469. [PMID: 35345875 PMCID: PMC8942080 DOI: 10.1016/j.neucom.2022.02.018] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Revised: 11/06/2021] [Accepted: 02/03/2022] [Indexed: 12/31/2022]
Abstract
Detecting COVID-19 in computed tomography (CT) or radiography images has been proposed as a supplement to the RT-PCR test. We compare slice-based (2D) and volume-based (3D) approaches to this problem and propose a deep learning ensemble, called IST-CovNet, combining the best 2D and 3D systems with novel preprocessing and attention modules and the use of a bidirectional Long Short-Term Memory model for combining slice-level decisions. The proposed ensemble obtains 90.80% accuracy and 0.95 AUC score overall on the newly collected IST-C dataset in detecting COVID-19 among normal controls and other types of lung pathologies; and 93.69% accuracy and 0.99 AUC score on the publicly available MosMedData dataset that consists of COVID-19 scans and normal controls only. The system also obtains state-of-art results (90.16% accuracy and 0.94 AUC) on the COVID-CT-MD dataset which is only used for testing. The system is deployed at Istanbul University Cerrahpaşa School of Medicine where it is used to automatically screen CT scans of patients, while waiting for RT-PCR tests or radiologist evaluation.
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Affiliation(s)
- Sara Atito Ali Ahmed
- Faculty of Engineering and Natural Sciences, Sabancı University, Istanbul 34956, Turkey
- Centre for Vision, Speech and Signal Processing, University of Surrey, Guildford GU2 7XH, U.K.7XH, UK
| | - Mehmet Can Yavuz
- Faculty of Engineering and Natural Sciences, Sabancı University, Istanbul 34956, Turkey
| | - Mehmet Umut Şen
- Faculty of Engineering and Natural Sciences, Sabancı University, Istanbul 34956, Turkey
| | - Fatih Gülşen
- Istanbul University-Cerrahpaşa, Cerrahpaşa Faculty of Medicine, Istanbul 34096, Turkey
| | - Onur Tutar
- Istanbul University-Cerrahpaşa, Cerrahpaşa Faculty of Medicine, Istanbul 34096, Turkey
| | - Bora Korkmazer
- Istanbul University-Cerrahpaşa, Cerrahpaşa Faculty of Medicine, Istanbul 34096, Turkey
| | - Cesur Samancı
- Istanbul University-Cerrahpaşa, Cerrahpaşa Faculty of Medicine, Istanbul 34096, Turkey
| | - Sabri Şirolu
- Istanbul University-Cerrahpaşa, Cerrahpaşa Faculty of Medicine, Istanbul 34096, Turkey
| | - Rauf Hamid
- Istanbul University-Cerrahpaşa, Cerrahpaşa Faculty of Medicine, Istanbul 34096, Turkey
| | - Ali Ergun Eryürekli
- Istanbul University-Cerrahpaşa, Cerrahpaşa Faculty of Medicine, Istanbul 34096, Turkey
| | - Toghrul Mammadov
- Istanbul University-Cerrahpaşa, Cerrahpaşa Faculty of Medicine, Istanbul 34096, Turkey
| | - Berrin Yanikoglu
- Faculty of Engineering and Natural Sciences, Sabancı University, Istanbul 34956, Turkey
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Balaha HM, El-Gendy EM, Saafan MM. A complete framework for accurate recognition and prognosis of COVID-19 patients based on deep transfer learning and feature classification approach. Artif Intell Rev 2022; 55:5063-5108. [PMID: 35125606 PMCID: PMC8799451 DOI: 10.1007/s10462-021-10127-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The sudden appearance of COVID-19 has put the world in a serious situation. Due to the rapid spread of the virus and the increase in the number of infected patients and deaths, COVID-19 was declared a pandemic. This pandemic has its destructive effect not only on humans but also on the economy. Despite the development and availability of different vaccines for COVID-19, scientists still warn the citizens of new severe waves of the virus, and as a result, fast diagnosis of COVID-19 is a critical issue. Chest imaging proved to be a powerful tool in the early detection of COVID-19. This study introduces an entire framework for the early detection and early prognosis of COVID-19 severity in the diagnosed patients using laboratory test results. It consists of two phases (1) Early Diagnostic Phase (EDP) and (2) Early Prognostic Phase (EPP). In EDP, COVID-19 patients are diagnosed using CT chest images. In the current study, 5, 159 COVID-19 and 10, 376 normal computed tomography (CT) images of Egyptians were used as a dataset to train 7 different convolutional neural networks using transfer learning. Data augmentation normal techniques and generative adversarial networks (GANs), CycleGAN and CCGAN, were used to increase the images in the dataset to avoid overfitting issues. 28 experiments were applied and multiple performance metrics were captured. Classification with no augmentation yielded \documentclass[12pt]{minimal}
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\begin{document}$$99.61\%$$\end{document}99.61% accuracy by EfficientNetB7 architecture. By applying CycleGAN and CC-GAN Augmentation, the maximum reported accuracies were \documentclass[12pt]{minimal}
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\begin{document}$$99.57\%$$\end{document}99.57% and \documentclass[12pt]{minimal}
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\begin{document}$$99.14\%$$\end{document}99.14% by MobileNetV1 and VGG-16 architectures respectively. In EPP, the prognosis of the severity of COVID-19 in patients is early determined using laboratory test results. In this study, 25 different classification techniques were applied and from the different results, the highest accuracies were \documentclass[12pt]{minimal}
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\begin{document}$$98.70\%$$\end{document}98.70% and \documentclass[12pt]{minimal}
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\begin{document}$$97.40\%$$\end{document}97.40% reported by the Ensemble Bagged Trees and Tree (Fine, Medium, and Coarse) techniques respectively.
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Affiliation(s)
- Hossam Magdy Balaha
- Computers and Control Systems Department, Faculty of Engineering, Mansoura University, Mansoura, Egypt
| | - Eman M. El-Gendy
- Computers and Control Systems Department, Faculty of Engineering, Mansoura University, Mansoura, Egypt
| | - Mahmoud M. Saafan
- Computers and Control Systems Department, Faculty of Engineering, Mansoura University, Mansoura, Egypt
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Islam MK, Habiba SU, Khan TA, Tasnim F. COV-RadNet: A Deep Convolutional Neural Network for Automatic Detection of COVID-19 from Chest X-Rays and CT Scans. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE UPDATE 2022; 2:100064. [PMID: 36039092 PMCID: PMC9404230 DOI: 10.1016/j.cmpbup.2022.100064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2021] [Revised: 08/19/2022] [Accepted: 08/23/2022] [Indexed: 05/07/2023]
Abstract
With the increase in severity of COVID-19 pandemic situation, the world is facing a critical fight to cope up with the impacts on human health, education and economy. The ongoing battle with the novel corona virus, is showing much priority to diagnose and provide rapid treatment to the patients. The rapid growth of COVID-19 has broken the healthcare system of the affected countries, creating a shortage in ICUs, test kits, ventilation support system. etc. This paper aims at finding an automatic COVID-19 detection approach which will assist the medical practitioners to diagnose the disease quickly and effectively. In this paper, a deep convolutional neural network, 'COV-RadNet' is proposed to detect COVID positive, viral pneumonia, lung opacity and normal, healthy people by analyzing their Chest Radiographic (X-ray and CT scans) images. Data augmentation technique is applied to balance the dataset 'COVID 19 Radiography Dataset' to make the classifier more robust to the classification task. We have applied transfer learning approach using four deep learning based models: VGG16, VGG19, ResNet152 and ResNext 101 to detect COVID-19 from chest X-ray images. We have achieved 97% classification accuracy using our proposed COV-RadNet model for COVID/Viral Pneumonia/Lungs Opacity/Normal, 99.5% accuracy to detect COVID/Viral Pneumonia/Normal and 99.72% accuracy to detect COVID and non-COVID people. Using chest CT scan images, we have found 99.25% accuracy to classify between COVID and non-COVID classes. Among the performance of the pre-trained models, ResNext 101 has shown the highest accuracy of 98.5% for multiclass classification (COVID, viral pneumonia, Lungs opacity and normal).
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Affiliation(s)
- Md Khairul Islam
- Khulna University of Engineering & Technology, Khulna, 9203, Khulna, Bangladesh
| | - Sultana Umme Habiba
- Khulna University of Engineering & Technology, Khulna, 9203, Khulna, Bangladesh
| | - Tahsin Ahmed Khan
- Khulna University of Engineering & Technology, Khulna, 9203, Khulna, Bangladesh
| | - Farzana Tasnim
- International Islamic University Chittagong, Kumira, 4318, Chittagong, Bangladesh
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34
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Bargshady G, Zhou X, Barua PD, Gururajan R, Li Y, Acharya UR. Application of CycleGAN and transfer learning techniques for automated detection of COVID-19 using X-ray images. Pattern Recognit Lett 2022; 153:67-74. [PMID: 34876763 PMCID: PMC8641403 DOI: 10.1016/j.patrec.2021.11.020] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2021] [Revised: 10/15/2021] [Accepted: 11/18/2021] [Indexed: 12/02/2022]
Abstract
Coronavirus (which is also known as COVID-19) is severely impacting the wellness and lives of many across the globe. There are several methods currently to detect and monitor the progress of the disease such as radiological image from patients' chests, measuring the symptoms and applying polymerase chain reaction (RT-PCR) test. X-ray imaging is one of the popular techniques used to visualise the impact of the virus on the lungs. Although manual detection of this disease using radiology images is more popular, it can be time-consuming, and is prone to human errors. Hence, automated detection of lung pathologies due to COVID-19 utilising deep learning (Bowles et al.) techniques can assist with yielding accurate results for huge databases. Large volumes of data are needed to achieve generalizable DL models; however, there are very few public databases available for detecting COVID-19 disease pathologies automatically. Standard data augmentation method can be used to enhance the models' generalizability. In this research, the Extensive COVID-19 X-ray and CT Chest Images Dataset has been used and generative adversarial network (GAN) coupled with trained, semi-supervised CycleGAN (SSA- CycleGAN) has been applied to augment the training dataset. Then a newly designed and finetuned Inception V3 transfer learning model has been developed to train the algorithm for detecting COVID-19 pandemic. The obtained results from the proposed Inception-CycleGAN model indicated Accuracy = 94.2%, Area under Curve = 92.2%, Mean Squared Error = 0.27, Mean Absolute Error = 0.16. The developed Inception-CycleGAN framework is ready to be tested with further COVID-19 X-Ray images of the chest.
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Affiliation(s)
- Ghazal Bargshady
- School of Business, University of Southern Queensland, 37 Sinnathamby Blvd, Springfield Central, QLD 4300, Australia
| | - Xujuan Zhou
- School of Business, University of Southern Queensland, 37 Sinnathamby Blvd, Springfield Central, QLD 4300, Australia
| | - Prabal Datta Barua
- School of Business, University of Southern Queensland, 37 Sinnathamby Blvd, Springfield Central, QLD 4300, Australia
| | - Raj Gururajan
- School of Business, University of Southern Queensland, 37 Sinnathamby Blvd, Springfield Central, QLD 4300, Australia
| | - Yuefeng Li
- School of Computer Science, Queensland University of Technology, Australia
| | - U Rajendra Acharya
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
- Department Bioinformatics and Medical Engineering, Asia University, Taiwan
- International Research Organization for Advanced Science and Technology (IROAST) Kumamoto University, Kumamoto, Japan
- School of Science and Technology, Singapore University of Social Sciences, Singapore
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35
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Balaha HM, El-Gendy EM, Saafan MM. CovH2SD: A COVID-19 detection approach based on Harris Hawks Optimization and stacked deep learning. EXPERT SYSTEMS WITH APPLICATIONS 2021; 186:115805. [PMID: 34511738 PMCID: PMC8418701 DOI: 10.1016/j.eswa.2021.115805] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2021] [Revised: 08/13/2021] [Accepted: 08/23/2021] [Indexed: 05/14/2023]
Abstract
Starting from Wuhan in China at the end of 2019, coronavirus disease (COVID-19) has propagated fast all over the world, affecting the lives of billions of people and increasing the mortality rate worldwide in few months. The golden treatment against the invasive spread of COVID-19 is done by identifying and isolating the infected patients, and as a result, fast diagnosis of COVID-19 is a critical issue. The common laboratory test for confirming the infection of COVID-19 is Reverse Transcription Polymerase Chain Reaction (RT-PCR). However, these tests suffer from some problems in time, accuracy, and availability. Chest images have proven to be a powerful tool in the early detection of COVID-19. In the current study, a hybrid learning and optimization approach named CovH2SD is proposed for the COVID-19 detection from the Chest Computed Tomography (CT) images. CovH2SD uses deep learning and pre-trained models to extract the features from the CT images and learn from them. It uses Harris Hawks Optimization (HHO) algorithm to optimize the hyperparameters. Transfer learning is applied using nine pre-trained convolutional neural networks (i.e. ResNet50, ResNet101, VGG16, VGG19, Xception, MobileNetV1, MobileNetV2, DenseNet121, and DenseNet169). Fast Classification Stage (FCS) and Compact Stacking Stage (CSS) are suggested to stack the best models into a single one. Nine experiments are applied and results are reported based on the Loss, Accuracy, Precision, Recall, F1-Score, and Area Under Curve (AUC) performance metrics. The comparison between combinations is applied using the Weighted Sum Method (WSM). Six experiments report a WSM value above 96.5%. The top WSM and accuracy reported values are 99.31% and 99.33% respectively which are higher than the eleven compared state-of-the-art studies.
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Affiliation(s)
- Hossam Magdy Balaha
- Computers Engineering and Systems Department, Faculty of Engineering, Mansoura University, Egypt
| | - Eman M El-Gendy
- Computers Engineering and Systems Department, Faculty of Engineering, Mansoura University, Egypt
| | - Mahmoud M Saafan
- Computers Engineering and Systems Department, Faculty of Engineering, Mansoura University, Egypt
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Wang SH, Zhu Z, Zhang YD. PSCNN: PatchShuffle Convolutional Neural Network for COVID-19 Explainable Diagnosis. Front Public Health 2021; 9:768278. [PMID: 34778194 PMCID: PMC8585997 DOI: 10.3389/fpubh.2021.768278] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Accepted: 09/29/2021] [Indexed: 12/11/2022] Open
Abstract
Objective: COVID-19 is a sort of infectious disease caused by a new strain of coronavirus. This study aims to develop a more accurate COVID-19 diagnosis system. Methods: First, the n-conv module (nCM) is introduced. Then we built a 12-layer convolutional neural network (12l-CNN) as the backbone network. Afterwards, PatchShuffle was introduced to integrate with 12l-CNN as a regularization term of the loss function. Our model was named PSCNN. Moreover, multiple-way data augmentation and Grad-CAM are employed to avoid overfitting and locating lung lesions. Results: The mean and standard variation values of the seven measures of our model were 95.28 ± 1.03 (sensitivity), 95.78 ± 0.87 (specificity), 95.76 ± 0.86 (precision), 95.53 ± 0.83 (accuracy), 95.52 ± 0.83 (F1 score), 91.7 ± 1.65 (MCC), and 95.52 ± 0.83 (FMI). Conclusion: Our PSCNN is better than 10 state-of-the-art models. Further, we validate the optimal hyperparameters in our model and demonstrate the effectiveness of PatchShuffle.
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Affiliation(s)
- Shui-Hua Wang
- School of Computing and Mathematical Sciences, University of Leicester, Leicester, United Kingdom
| | - Ziquan Zhu
- Science in Civil Engineering, University of Florida, Gainesville, FL, United States
| | - Yu-Dong Zhang
- School of Computing and Mathematical Sciences, University of Leicester, Leicester, United Kingdom
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Taresh MM, Zhu N, Ali TAA, Alghaili M, Hameed AS, Mutar ML. KL-MOB: automated COVID-19 recognition using a novel approach based on image enhancement and a modified MobileNet CNN. PeerJ Comput Sci 2021; 7:e694. [PMID: 34616885 PMCID: PMC8459788 DOI: 10.7717/peerj-cs.694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Accepted: 08/05/2021] [Indexed: 06/13/2023]
Abstract
The emergence of the novel coronavirus pneumonia (COVID-19) pandemic at the end of 2019 led to worldwide chaos. However, the world breathed a sigh of relief when a few countries announced the development of a vaccine and gradually began to distribute it. Nevertheless, the emergence of another wave of this pandemic returned us to the starting point. At present, early detection of infected people is the paramount concern of both specialists and health researchers. This paper proposes a method to detect infected patients through chest x-ray images by using the large dataset available online for COVID-19 (COVIDx), which consists of 2128 X-ray images of COVID-19 cases, 8,066 normal cases, and 5,575 cases of pneumonia. A hybrid algorithm is applied to improve image quality before undertaking neural network training. This algorithm combines two different noise-reduction filters in the image, followed by a contrast enhancement algorithm. To detect COVID-19, we propose a novel convolution neural network (CNN) architecture called KL-MOB (COVID-19 detection network based on the MobileNet structure). The performance of KL-MOB is boosted by adding the Kullback-Leibler (KL) divergence loss function when trained from scratch. The KL divergence loss function is adopted for content-based image retrieval and fine-grained classification to improve the quality of image representation. The results are impressive: the overall benchmark accuracy, sensitivity, specificity, and precision are 98.7%, 98.32%, 98.82% and 98.37%, respectively. These promising results should help other researchers develop innovative methods to aid specialists. The tremendous potential of the method proposed herein can also be used to detect COVID-19 quickly and safely in patients throughout the world.
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Affiliation(s)
| | - Ningbo Zhu
- College of Information Science and Engineering, Hunan University, Changsha, Hunan, China
| | - Talal Ahmed Ali Ali
- College of Information Science and Engineering, Hunan University, Changsha, Hunan, China
| | - Mohammed Alghaili
- College of Information Science and Engineering, Hunan University, Changsha, Hunan, China
| | - Asaad Shakir Hameed
- Department of Mathematics, General Directorate of Thi-Qar Education, Ministry of Education, Thi-Qar, Iraq
| | - Modhi Lafta Mutar
- Department of Mathematics, General Directorate of Thi-Qar Education, Ministry of Education, Thi-Qar, Iraq
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38
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Zhang F. Application of machine learning in CT images and X-rays of COVID-19 pneumonia. Medicine (Baltimore) 2021; 100:e26855. [PMID: 34516488 PMCID: PMC8428739 DOI: 10.1097/md.0000000000026855] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Revised: 07/18/2021] [Accepted: 07/20/2021] [Indexed: 01/05/2023] Open
Abstract
ABSTRACT Coronavirus disease (COVID-19) has spread worldwide. X-ray and computed tomography (CT) are 2 technologies widely used in image acquisition, segmentation, diagnosis, and evaluation. Artificial intelligence can accurately segment infected parts in X-ray and CT images, assist doctors in improving diagnosis efficiency, and facilitate the subsequent assessment of the severity of the patient infection. The medical assistant platform based on machine learning can help radiologists make clinical decisions and helper in screening, diagnosis, and treatment. By providing scientific methods for image recognition, segmentation, and evaluation, we summarized the latest developments in the application of artificial intelligence in COVID-19 lung imaging, and provided guidance and inspiration to researchers and doctors who are fighting the COVID-19 virus.
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Li B. Hearing loss classification via AlexNet and extreme learning machine. INTERNATIONAL JOURNAL OF COGNITIVE COMPUTING IN ENGINEERING 2021; 2:144-153. [DOI: 10.1016/j.ijcce.2021.09.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
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