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Elouadi F, Amri A, El-Baouchi A, Kehel Z, Jilal A, Ibriz M. Genotypic and environmental effects on quality and nutritional attributes of Moroccan barley cultivars and elite breeding lines. Front Nutr 2023; 10:1204572. [PMID: 37899827 PMCID: PMC10602734 DOI: 10.3389/fnut.2023.1204572] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Accepted: 09/12/2023] [Indexed: 10/31/2023] Open
Abstract
Although barley is mainly used for livestock feed and beverages, its use as human feed can enrich human diets with some health benefits. The development of new hulless varieties rich in β-glucans and micronutrients can enhance the use of barley as food, but little is known about the effects of the environment on these nutritional traits. In this study, we evaluated five Moroccan varieties and two elite breeding lines of barley at four locations in Morocco during the 2016-2017 and 2017-2018 cropping seasons. The results showed highly significant differences between genotypes for β-glucan, protein, iron, and selenium contents, as well as 1000 kernel weight, but not zinc content; significant to highly significant differences between environments for all traits except β-glucan content; and significant to highly significant interactions for all traits. The highest level of β-glucan content has reached 11.57% observed at the Sidi El Aydi site during the growing season 2017-2018 for the hulless variety Chifaa. This variety has shown the highest content of β-glucan (6.2-11.57%) over all environments except at Tassaout during the 2016-2017 seasons. The breeding line M9V5 has achieved significantly higher protein content at all the locations during the two growing seasons, ranging from 12.38 to 20.14%. Most hulless lines had significantly higher β-glucan and protein contents, but lower 1000 kernel weight. For micronutrients, the content ranges were 28.94 to 38.23 ppm for Fe, 28.78 to 36.49 ppm for Zn, and 0.14 to 0.18 ppm for Se, with the highest content for Fe and Zn shown by the breeding line M9V5 and Chifaa showing average contents of 33.39 ppm, 35.34 ppm, and 0.18 ppm for Fe, Zn, and Se, respectively. The GGE biplot confirmed the high and relatively stable content of β-glucan and acceptable micronutrient contents of the Chifaa variety and identified Marchouch as the most discriminant site to breed for biofortified barley varieties.
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Affiliation(s)
- Fadwa Elouadi
- Plant Animal Productions and Agro-Industry Laboratory, Ibn Tofail University, Kenitra, Morocco
| | - Ahmed Amri
- International Center for Agricultural Research in the Dry Areas (ICARDA), Rabat, Morocco
| | - Adil El-Baouchi
- AgroBioSciences, Mohammed VI Polytechnic University, Ben Guerir, Morocco
| | - Zakaria Kehel
- International Center for Agricultural Research in the Dry Areas (ICARDA), Rabat, Morocco
| | - Abderrazek Jilal
- National Institute for Agricultural Research, Regional Center of Rabat, Rabat Institutes, Rabat, Morocco
| | - Mohammed Ibriz
- Plant Animal Productions and Agro-Industry Laboratory, Ibn Tofail University, Kenitra, Morocco
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Omirou M, Fasoula D, Stylianou M, Zorpas AA, Ioannides IM. N-Source Determines Barley Productivity, Nutrient Accumulation, and Grain Quality in Cyprus Rainfed Agricultural Systems. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2023; 20:3943. [PMID: 36900954 PMCID: PMC10001598 DOI: 10.3390/ijerph20053943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Revised: 02/20/2023] [Accepted: 02/20/2023] [Indexed: 06/18/2023]
Abstract
The Eastern Mediterranean and Middle East (EMME) region is already experiencing the negative effects of increased temperatures and the increase in prolonged drought periods. The use of organic fertilization could be a valuable tool to meet the main challenges of climate change and maintain the productivity, quality, and sustainability of rainfed agricultural ecosystems. In the current study, we compare the effect of manure, compost, and chemical fertilization (NH4NO3) on barley grain and straw yield in a field study for three consecutive growing seasons. The hypothesis that the barley productivity, nutrient accumulation, and grain quality remain similar among the different nutrient management strategies was tested. The results showed that both growing season and type of nutrient source significantly affected barley grain and straw yield (F6,96 = 13.57, p < 0.01). The lowest productivity was noticed in the non-fertilized plots while chemical and organic fertilization exhibited similar grain yield, ranging from 2 to 3.4 t/ha throughout the growing seasons. For straw, the use of compost had no effect on the yield in any of the growing seasons examined. The use of manure and compost had a significant effect on grain macro- and micronutrient content but this was highly related to growing season. Principal component analysis (PCA) clearly demonstrated the discrimination of the different type of fertilization on barley performance during the course of the study, while the application of compost was highly associated with an increase in micronutrients in grain samples. Furthermore, structural equational modeling (SEM) showed that both chemical and organic fertilization had a direct positive effect on macro- (r = 0.44, p < 0.01) and micronutrient (r = 0.88, p < 0.01) content of barley grain and a positive indirect effect on barley productivity through N accumulation in grain (β = 0.15, p = 0.007). The current study showed that barley grain and straw yield was similar between manure and NH4NO3 treatments, while compost exhibited a residual positive effect causing an increase in grain yield during the growing season. The results highlight that N fertilization under rainfed conditions is beneficial to barley productivity through its indirect effects on N accumulation in grain and straw, while it improves grain quality through the increased accumulation of micronutrients.
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Affiliation(s)
- Michalis Omirou
- Department of Agrobiotechnology, Agricultural Research Institute, P.O. Box 22016, Nicosia 1516, Cyprus
| | - Dionysia Fasoula
- Department of Plant Breeding, Agricultural Research Institute, P.O. Box 22016, Nicosia 1516, Cyprus
| | - Marinos Stylianou
- Laboratory of Chemical Engineering and Engineering Sustainability, Faculty of Pure and Applied Sciences, Open University of Cyprus, Giannou Kranidioti 89, Latsia, Nicosia 2231, Cyprus
| | - Antonis A. Zorpas
- Laboratory of Chemical Engineering and Engineering Sustainability, Faculty of Pure and Applied Sciences, Open University of Cyprus, Giannou Kranidioti 89, Latsia, Nicosia 2231, Cyprus
| | - Ioannis M. Ioannides
- Department of Agrobiotechnology, Agricultural Research Institute, P.O. Box 22016, Nicosia 1516, Cyprus
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Dwivedi SL, Garcia-Oliveira AL, Govindaraj M, Ortiz R. Biofortification to avoid malnutrition in humans in a changing climate: Enhancing micronutrient bioavailability in seed, tuber, and storage roots. FRONTIERS IN PLANT SCIENCE 2023; 14:1119148. [PMID: 36794214 PMCID: PMC9923027 DOI: 10.3389/fpls.2023.1119148] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Accepted: 01/12/2023] [Indexed: 06/18/2023]
Abstract
Malnutrition results in enormous socio-economic costs to the individual, their community, and the nation's economy. The evidence suggests an overall negative impact of climate change on the agricultural productivity and nutritional quality of food crops. Producing more food with better nutritional quality, which is feasible, should be prioritized in crop improvement programs. Biofortification refers to developing micronutrient -dense cultivars through crossbreeding or genetic engineering. This review provides updates on nutrient acquisition, transport, and storage in plant organs; the cross-talk between macro- and micronutrients transport and signaling; nutrient profiling and spatial and temporal distribution; the putative and functionally characterized genes/single-nucleotide polymorphisms associated with Fe, Zn, and β-carotene; and global efforts to breed nutrient-dense crops and map adoption of such crops globally. This article also includes an overview on the bioavailability, bioaccessibility, and bioactivity of nutrients as well as the molecular basis of nutrient transport and absorption in human. Over 400 minerals (Fe, Zn) and provitamin A-rich cultivars have been released in the Global South. Approximately 4.6 million households currently cultivate Zn-rich rice and wheat, while ~3 million households in sub-Saharan Africa and Latin America benefit from Fe-rich beans, and 2.6 million people in sub-Saharan Africa and Brazil eat provitamin A-rich cassava. Furthermore, nutrient profiles can be improved through genetic engineering in an agronomically acceptable genetic background. The development of "Golden Rice" and provitamin A-rich dessert bananas and subsequent transfer of this trait into locally adapted cultivars are evident, with no significant change in nutritional profile, except for the trait incorporated. A greater understanding of nutrient transport and absorption may lead to the development of diet therapy for the betterment of human health.
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Affiliation(s)
| | - Ana Luísa Garcia-Oliveira
- International Maize and Wheat Research Center, Centro Internacional de Mejoramiento de Maíz. y Trigo (CIMMYT), Nairobi, Kenya
- Department of Molecular Biology, College of Biotechnology, CCS Haryana Agricultural University, Hissar, India
| | - Mahalingam Govindaraj
- HarvestPlus Program, Alliance of Bioversity International and the International Center for Tropical Agriculture (CIAT), Cali, Colombia
| | - Rodomiro Ortiz
- Swedish University of Agricultural Sciences, Lomma, Sweden
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Mahalingam R, Duhan N, Kaundal R, Smertenko A, Nazarov T, Bregitzer P. Heat and drought induced transcriptomic changes in barley varieties with contrasting stress response phenotypes. FRONTIERS IN PLANT SCIENCE 2022; 13:1066421. [PMID: 36570886 PMCID: PMC9772561 DOI: 10.3389/fpls.2022.1066421] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Accepted: 10/28/2022] [Indexed: 06/01/2023]
Abstract
Drought and heat stress substantially impact plant growth and productivity. When subjected to drought or heat stress, plants exhibit reduction in growth resulting in yield losses. The occurrence of these two stresses together intensifies their negative effects. Unraveling the molecular changes in response to combined abiotic stress is essential to breed climate-resilient crops. In this study, transcriptome profiles were compared between stress-tolerant (Otis), and stress-sensitive (Golden Promise) barley genotypes subjected to drought, heat, and combined heat and drought stress for five days during heading stage. The major differences that emerged from the transcriptome analysis were the overall number of differentially expressed genes was relatively higher in Golden Promise (GP) compared to Otis. The differential expression of more than 900 transcription factors in GP and Otis may aid this transcriptional reprogramming in response to abiotic stress. Secondly, combined heat and water deficit stress results in a unique and massive transcriptomic response that cannot be predicted from individual stress responses. Enrichment analyses of gene ontology terms revealed unique and stress type-specific adjustments of gene expression. Weighted Gene Co-expression Network Analysis identified genes associated with RNA metabolism and Hsp70 chaperone components as hub genes that can be useful for engineering tolerance to multiple abiotic stresses. Comparison of the transcriptomes of unstressed Otis and GP plants identified several genes associated with biosynthesis of antioxidants and osmolytes were higher in the former that maybe providing innate tolerance capabilities to effectively combat hostile conditions. Lines with different repertoire of innate tolerance mechanisms can be effectively leveraged in breeding programs for developing climate-resilient barley varieties with superior end-use traits.
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Affiliation(s)
| | - Naveen Duhan
- Department of Plant, Soils and Climate, Utah State University, Logan, UT, United States
| | - Rakesh Kaundal
- Department of Plant, Soils and Climate, Utah State University, Logan, UT, United States
| | - Andrei Smertenko
- Institute of Biological Chemistry, Washington State University, Pullman, WA, United States
| | - Taras Nazarov
- Institute of Biological Chemistry, Washington State University, Pullman, WA, United States
| | - Phil Bregitzer
- National Small Grains Germplasm Research Facility, USDA-ARS, Aberdeen, ID, United States
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5
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Nyiraguhirwa S, Grana Z, Ouabbou H, Iraqi D, Ibriz M, Mamidi S, Udupa SM. A Genome-Wide Association Study Identifying Single-Nucleotide Polymorphisms for Iron and Zinc Biofortification in a Worldwide Barley Collection. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11101349. [PMID: 35631775 PMCID: PMC9148054 DOI: 10.3390/plants11101349] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Revised: 04/28/2022] [Accepted: 05/05/2022] [Indexed: 05/12/2023]
Abstract
Micronutrient deficiency affects half of the world’s population, mostly in developing countries. Severe health issues such as anemia and inadequate growth in children below five years of age and pregnant women have been linked to mineral deficiencies (mostly zinc and iron). Improving the mineral content in staple crops, also known as mineral biofortification, remains the best approach to address mineral malnutrition. Barley is a staple crop in some parts of the world and is a healthy choice since it contains β-glucan, a high dietary protein. Barley mineral biofortification, especially with zinc and iron, can be beneficial since barley easily adapts to marginalized areas and requires less input than other frequently consumed cereals. In this study, we analyzed zinc and iron content in 496 barley samples. The samples were genotyped with an Illumina 50 K SNP chip. Genome-wide association studies (GWAS) identified 62 SNPs and 68 SNPs (p < 0.001) associated with iron and zinc content in grains, respectively. After a Bonferroni correction (p < 0.005), there were 12 SNPs (single-nucleotide polymorphism) associated with Zn and 6 for iron. SNP annotations revealed proteins involved in membrane transport, Zn and Fe binding, linked to nutrient remobilization in grains. These results can be used to develop biofortified barley via marker-assisted selection (MAS), which could alleviate mineral malnutrition.
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Affiliation(s)
- Solange Nyiraguhirwa
- International Center for Agriculture Research in Dry Areas (ICARDA), Rue Hafiane Chekaoui, P.O. Box 6299, Rabat 10000, Morocco; (S.N.); (Z.G.)
- Institut National de Recherche Agronomique (INRA), Avenue Ennasr, P.O. Box 415, Rabat 10080, Morocco; (H.O.); (D.I.)
- Faculty of Sciences, Ibn Tofail University, University Campus, P.O. Box 133, Kénitra 14000, Morocco;
| | - Zahra Grana
- International Center for Agriculture Research in Dry Areas (ICARDA), Rue Hafiane Chekaoui, P.O. Box 6299, Rabat 10000, Morocco; (S.N.); (Z.G.)
- Institut National de Recherche Agronomique (INRA), Avenue Ennasr, P.O. Box 415, Rabat 10080, Morocco; (H.O.); (D.I.)
- Faculty of Sciences, Ibn Tofail University, University Campus, P.O. Box 133, Kénitra 14000, Morocco;
| | - Hassan Ouabbou
- Institut National de Recherche Agronomique (INRA), Avenue Ennasr, P.O. Box 415, Rabat 10080, Morocco; (H.O.); (D.I.)
| | - Driss Iraqi
- Institut National de Recherche Agronomique (INRA), Avenue Ennasr, P.O. Box 415, Rabat 10080, Morocco; (H.O.); (D.I.)
| | - Mohammed Ibriz
- Faculty of Sciences, Ibn Tofail University, University Campus, P.O. Box 133, Kénitra 14000, Morocco;
| | - Sujan Mamidi
- Hudson Alpha Institute for Biotechnology, 601 Genome Way Northwest, Huntsville, AL 35806, USA;
| | - Sripada M. Udupa
- International Center for Agriculture Research in Dry Areas (ICARDA), Rue Hafiane Chekaoui, P.O. Box 6299, Rabat 10000, Morocco; (S.N.); (Z.G.)
- Correspondence: ; Tel.: +212-673346102
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6
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Garcia-Gimenez G, Jobling SA. Gene editing for barley grain quality improvement. J Cereal Sci 2022. [DOI: 10.1016/j.jcs.2021.103394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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7
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Höller S, Küpper H, Brückner D, Garrevoet J, Spiers K, Falkenberg G, Andresen E, Peiter E. Overexpression of METAL TOLERANCE PROTEIN8 reveals new aspects of metal transport in Arabidopsis thaliana seeds. PLANT BIOLOGY (STUTTGART, GERMANY) 2022; 24:23-29. [PMID: 34546650 DOI: 10.1111/plb.13342] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2021] [Accepted: 08/16/2021] [Indexed: 06/13/2023]
Abstract
METAL TOLERANCE PROTEIN8 (MTP8) of Arabidopsis thaliana is a member of the CATION DIFFUSION FACILITATOR (CDF) family of proteins that transports primarily manganese (Mn), but also iron (Fe). MTP8 mediates Mn allocation to specific cell types in the developing embryo, and Fe re-allocation as well as Mn tolerance during imbibition. We analysed if an overexpression of MTP8 driven by the CaMV 35S promoter has an effect on Mn tolerance during imbibition and on Mn and Fe storage in seeds, which would render it a biofortification target. Fe, Mn and Zn concentrations in MTP8-overexpressing lines in wild type and vit1-1 backgrounds were analysed by ICP-MS. Distribution of metals in intact seeds was determined by synchrotron µXRF tomography. MTP8 overexpression led to a strongly increased Mn tolerance of seeds during imbibition, supporting its effectiveness in loading excess Mn into the vacuole. In mature seeds, MTP8 overexpression did not cause a consistent increase in Mn and Fe accumulation, and it did not change the allocation pattern of these metals. Zn concentrations were consistently increased in bulk samples. The results demonstrate that Mn and Fe allocation is not determined primarily by the MTP8 expression pattern, suggesting either a cell type-specific provision of metals for vacuolar sequestration by upstream transport processes, or the determination of MTP8 activity by post-translational regulation.
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Affiliation(s)
- S Höller
- Plant Nutrition Laboratory, Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
| | - H Küpper
- Biology Centre, Institute of Plant Molecular Biology, Department of Plant Biophysics & Biochemistry, Czech Academy of Sciences, České Budějovice, Czech Republic
- Department of Experimental Plant Biology, University of South Bohemia, České Budějovice, Czech Republic
| | - D Brückner
- Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany
- Department of Physics, University of Hamburg, Hamburg, Germany
- Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Bochum, Germany
| | - J Garrevoet
- Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany
| | - K Spiers
- Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany
| | - G Falkenberg
- Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany
| | - E Andresen
- Biology Centre, Institute of Plant Molecular Biology, Department of Plant Biophysics & Biochemistry, Czech Academy of Sciences, České Budějovice, Czech Republic
| | - E Peiter
- Plant Nutrition Laboratory, Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
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Komarnytsky S, Retchin S, Vong CI, Lila MA. Gains and Losses of Agricultural Food Production: Implications for the Twenty-First Century. Annu Rev Food Sci Technol 2021; 13:239-261. [PMID: 34813357 DOI: 10.1146/annurev-food-082421-114831] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The world food supply depends on a diminishing list of plant crops and animal livestock to not only feed the ever-growing human population but also improve its nutritional state and lower the disease burden. Over the past century or so, technological advances in agricultural and food processing have helped reduce hunger and poverty but have not adequately addressed sustainability targets. This has led to an erosion of agricultural biodiversity and balanced diets and contributed to climate change and rising rates of chronic metabolic diseases. Modern food supply chains have progressively lost dietary fiber, complex carbohydrates, micronutrients, and several classes of phytochemicals with high bioactivity and nutritional relevance. This review introduces the concept of agricultural food systems losses and focuses on improved sources of agricultural diversity, proteins with enhanced resilience, and novel monitoring, processing, and distribution technologies that are poised to improve food security, reduce food loss and waste, and improve health profiles in the near future. Expected final online publication date for the Annual Review of Food Science and Technology, Volume 13 is March 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
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Affiliation(s)
- Slavko Komarnytsky
- Plants for Human Health Institute, North Carolina State University, Kannapolis, North Carolina; .,Department of Food, Bioprocessing, and Nutrition Sciences, North Carolina State University, Raleigh, North Carolina
| | - Sophia Retchin
- Kenan-Flagler Business School, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina
| | - Chi In Vong
- Plants for Human Health Institute, North Carolina State University, Kannapolis, North Carolina; .,Department of Food, Bioprocessing, and Nutrition Sciences, North Carolina State University, Raleigh, North Carolina
| | - Mary Ann Lila
- Plants for Human Health Institute, North Carolina State University, Kannapolis, North Carolina; .,Department of Food, Bioprocessing, and Nutrition Sciences, North Carolina State University, Raleigh, North Carolina
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Maurer A, Pillen K. Footprints of Selection Derived From Temporal Heterozygosity Patterns in a Barley Nested Association Mapping Population. FRONTIERS IN PLANT SCIENCE 2021; 12:764537. [PMID: 34721490 PMCID: PMC8551860 DOI: 10.3389/fpls.2021.764537] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Accepted: 09/22/2021] [Indexed: 06/13/2023]
Abstract
Nowadays, genetic diversity more than ever represents a key driver of adaptation to climate challenges like drought, heat, and salinity. Therefore, there is a need to replenish the limited elite gene pools with favorable exotic alleles from the wild progenitors of our crops. Nested association mapping (NAM) populations represent one step toward exotic allele evaluation and enrichment of the elite gene pool. We investigated an adaptive selection strategy in the wild barley NAM population HEB-25 based on temporal genomic data by studying the fate of 214,979 SNP loci initially heterozygous in individual BC1S3 lines after five cycles of selfing and field propagation. We identified several loci exposed to adaptive selection in HEB-25. In total, 48.7% (104,725 SNPs) of initially heterozygous SNP calls in HEB-25 were fixed in BC1S3:8 generation, either toward the wild allele (19.9%) or the cultivated allele (28.8%). Most fixed SNP loci turned out to represent gene loci involved in domestication and flowering time as well as plant height, for example, btr1/btr2, thresh-1, Ppd-H1, and sdw1. Interestingly, also unknown loci were found where the exotic allele was fixed, hinting at potentially useful exotic alleles for plant breeding.
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10
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Modeling the Effects of Irrigation Water Salinity on Growth, Yield and Water Productivity of Barley in Three Contrasted Environments. AGRONOMY-BASEL 2020. [DOI: 10.3390/agronomy10101459] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Freshwater scarcity and other abiotic factors, such as climate and soil salinity in the Near East and North Africa (NENA) region, are affecting crop production. Therefore, farmers are looking for salt-tolerant crops that can successfully be grown in these harsh environments using poor-quality groundwater. Barley is the main staple food crop for most of the countries of this region, including Tunisia. In this study, the AquaCrop model with a salinity module was used to evaluate the performance of two barley varieties contrasted for their resistance to salinity in three contrasted agro-climatic areas in Tunisia. These zones represent sub-humid, semi-arid, and arid climates. The model was calibrated and evaluated using field data collected from two cropping seasons (2012–14), then the calibrated model was used to develop different scenarios under irrigation with saline water from 5, 10 to 15 dS m−1. The scenario results indicate that biomass and yield were reduced by 40% and 27% in the semi-arid region (KAI) by increasing the irrigation water salinity from 5 to 15 dS m−1, respectively. For the salt-sensitive variety, the reductions in biomass and grain yield were about 70%, respectively, although overall biomass and yield in the arid region (MED) were lower than in the KAI area, mainly with increasing salinity levels. Under the same environmental conditions, biomass and yield reductions for the salt-tolerant barley variety were only 16% and 8%. For the salt-sensitive variety, the biomass and grain yield reductions in the MED area were about 12% and 43%, respectively, with a similar increase in the salinity levels. Similar trends were visible in water productivities. Interestingly, biomass, grain yield, and water productivity values for both barley varieties were comparable in the sub-humid region (BEJ) that does not suffer from salt stress. However, the results confirm the interest of cultivating a variety tolerant to salinity in environments subjected to salt stress. Therefore, farmers can grow both varieties in the rainfed of BEJ; however, in KAI and MED areas where irrigation is necessary for crop growth, the salt-tolerant barley variety should be preferred. Indeed, the water cost will be reduced by 49% through growing a tolerant variety irrigated with saline water of 15 dS m−1.
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11
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Wiegmann M, Backhaus A, Seiffert U, Thomas WTB, Flavell AJ, Pillen K, Maurer A. Optimizing the procedure of grain nutrient predictions in barley via hyperspectral imaging. PLoS One 2019; 14:e0224491. [PMID: 31697705 PMCID: PMC6837513 DOI: 10.1371/journal.pone.0224491] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2019] [Accepted: 10/15/2019] [Indexed: 12/03/2022] Open
Abstract
Hyperspectral imaging enables researchers and plant breeders to analyze various traits of interest like nutritional value in high throughput. In order to achieve this, the optimal design of a reliable calibration model, linking the measured spectra with the investigated traits, is necessary. In the present study we investigated the impact of different regression models, calibration set sizes and calibration set compositions on prediction performance. For this purpose, we analyzed concentrations of six globally relevant grain nutrients of the wild barley population HEB-YIELD as case study. The data comprised 1,593 plots, grown in 2015 and 2016 at the locations Dundee and Halle, which have been entirely analyzed through traditional laboratory methods and hyperspectral imaging. The results indicated that a linear regression model based on partial least squares outperformed neural networks in this particular data modelling task. There existed a positive relationship between the number of samples in a calibration model and prediction performance, with a local optimum at a calibration set size of ~40% of the total data. The inclusion of samples from several years and locations could clearly improve the predictions of the investigated nutrient traits at small calibration set sizes. It should be stated that the expansion of calibration models with additional samples is only useful as long as they are able to increase trait variability. Models obtained in a certain environment were only to a limited extent transferable to other environments. They should therefore be successively upgraded with new calibration data to enable a reliable prediction of the desired traits. The presented results will assist the design and conceptualization of future hyperspectral imaging projects in order to achieve reliable predictions. It will in general help to establish practical applications of hyperspectral imaging systems, for instance in plant breeding concepts.
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Affiliation(s)
- Mathias Wiegmann
- Martin Luther University Halle-Wittenberg (MLU), Institute of Agricultural and Nutritional Sciences, Chair of Plant Breeding, Halle, Germany
| | - Andreas Backhaus
- Fraunhofer Institute for Factory Operation and Automation (IFF), Magdeburg, Germany
| | - Udo Seiffert
- Fraunhofer Institute for Factory Operation and Automation (IFF), Magdeburg, Germany
| | | | - Andrew J. Flavell
- University of Dundee at JHI, School of Life Sciences, Invergowrie, Dundee, Scotland, United Kingdom
| | - Klaus Pillen
- Martin Luther University Halle-Wittenberg (MLU), Institute of Agricultural and Nutritional Sciences, Chair of Plant Breeding, Halle, Germany
| | - Andreas Maurer
- Martin Luther University Halle-Wittenberg (MLU), Institute of Agricultural and Nutritional Sciences, Chair of Plant Breeding, Halle, Germany
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12
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Herzig P, Backhaus A, Seiffert U, von Wirén N, Pillen K, Maurer A. Genetic dissection of grain elements predicted by hyperspectral imaging associated with yield-related traits in a wild barley NAM population. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2019; 285:151-164. [PMID: 31203880 DOI: 10.1016/j.plantsci.2019.05.008] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2019] [Revised: 05/08/2019] [Accepted: 05/10/2019] [Indexed: 05/05/2023]
Abstract
Enhancing the accumulation of essential mineral elements in cereal grains is of prime importance for combating human malnutrition. Biofortification by breeding holds great potential for improving nutrient accumulation in grains. However, conventional breeding approaches require element analysis of many grain samples, which causes high costs. Here we applied hyperspectral imaging to estimate the concentration of 15 grain elements (C, B, Ca, Cd, Cu, Fe, K, Mg, Mn, Mo, N, Na, P, S, Zn) in high-throughput in the wild barley nested association mapping (NAM) population HEB-25, comprising 1,420 BC1S3 lines derived from crossing 25 wild barley accessions with the cultivar 'Barke'. Nutrient concentrations varied largely with a multitude of lines having higher micronutrient concentration than 'Barke'. In a genome-wide association study (GWAS), we located 75 quantitative trait locus (QTL) hotspots, whereof many could be explained by major genes such as NO APICAL MERISTEM-1 (NAM-1) and PHOTOPERIOD 1 (Ppd-H1). The GWAS approach revealed exotic alleles that were able to increase grain element concentrations. Remarkably, a QTL linked to GIBBERELLIN 20 OXIDASE 2 (HvGA20ox2) significantly increased several grain elements without yield loss. We conclude that introgressing promising exotic alleles into elite breeding material can assist in improving the nutritional value of barley grains.
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Affiliation(s)
- Paul Herzig
- Martin Luther University Halle-Wittenberg, Institute of Agricultural and Nutritional Sciences, Chair of Plant Breeding, Betty-Heimann-Str. 3, 06120 Halle, Germany
| | - Andreas Backhaus
- Fraunhofer Institute for Factory Operation and Automation (IFF), Sandtorstraße 22, 39106 Magdeburg, Germany
| | - Udo Seiffert
- Fraunhofer Institute for Factory Operation and Automation (IFF), Sandtorstraße 22, 39106 Magdeburg, Germany
| | - Nicolaus von Wirén
- Molecular Plant Nutrition, Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466 Stadt Seeland, OT Gatersleben, Germany
| | - Klaus Pillen
- Martin Luther University Halle-Wittenberg, Institute of Agricultural and Nutritional Sciences, Chair of Plant Breeding, Betty-Heimann-Str. 3, 06120 Halle, Germany
| | - Andreas Maurer
- Martin Luther University Halle-Wittenberg, Institute of Agricultural and Nutritional Sciences, Chair of Plant Breeding, Betty-Heimann-Str. 3, 06120 Halle, Germany.
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