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Liu X, Zhang H, Zhang W, Jia Q, Chen X, Chen H. Comparative transcriptome analysis between two different cadmium-accumulating genotypes of soybean (Glycine max) in response to cadmium stress. BMC Genom Data 2024; 25:43. [PMID: 38710997 DOI: 10.1186/s12863-024-01226-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Accepted: 04/22/2024] [Indexed: 05/08/2024] Open
Abstract
BACKGROUND Cadmium (Cd) is extremely toxic and non-essential for plants. Different soybean varieties differ greatly in their Cd accumulation ability, but little is known about the underlying molecular mechanisms. RESULTS Here, we performed transcriptomic analysis using Illumina pair-end sequencing on root tissues from two soybean varieties (su8, high-Cd-accumulating (HAS) and su7, low Cd-accumulating (LAS)) grown with 0 or 50 μM CdSO4. A total of 18.76 million clean reads from the soybean root samples were obtained after quality assessment and data filtering. After Cd treatment, 739 differentially expressed genes (DEGs; 265 up and 474 down) were found in HAS; however, only 259 DEGs (88 up and 171 down) were found in LAS, and 64 genes were same between the two varieties. Pathway enrichment analysis suggested that after cadmium treatment, the DEGs between LAS and HAS were mainly enriched in glutathione metabolism and plant-pathogen interaction pathways. KEGG analysis showed that phenylalanine metabolism responding to cadmium stress in LAS, while ABC transporters responding to cadmium stress in HAS. Besides we found more differential expressed heavy metal transporters such as ABC transporters and zinc transporters in HAS than LAS, and there were more transcription factors differently expressed in HAS than LAS after cadmium treatment in two soybean varieties, eg. bHLH transcription factor, WRKY transcription factor and ZIP transcription factor. CONCLUSIONS Findings from this study will shed new insights on the underlying molecular mechanisms behind the Cd accumulation in soybean.
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Affiliation(s)
- Xiaoqing Liu
- Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China
| | - Hongmei Zhang
- Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China
| | - Wei Zhang
- Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China
| | - Qianru Jia
- Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China
| | - Xin Chen
- Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China.
| | - Huatao Chen
- Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China.
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2
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Pang B, Zuo D, Yang T, Yu J, Zhou L, Hou Y, Yu J, Ye L, Gu L, Wang H, Du X, Liu Y, Zhu B. BcaSOD1 enhances cadmium tolerance in transgenic Arabidopsis by regulating the expression of genes related to heavy metal detoxification and arginine synthesis. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 206:108299. [PMID: 38150840 DOI: 10.1016/j.plaphy.2023.108299] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Accepted: 12/19/2023] [Indexed: 12/29/2023]
Abstract
Cadmium (Cd), which is a nonessential heavy metal element for organisms, can have a severe impact on the growth and development of organisms that absorb excessive Cd. Studies have shown that Brassica carinata, a semiwild oil crop, has strong tolerance to various abiotic stresses, and RNA-seq has revealed that the B. carinata superoxide dismutase gene (BcaSOD1) likely responds to Cd stress. To elucidate the BcaSOD1 function involved in tolerance of Cd stress, we cloned the coding sequences of BcaSOD1 from a purple B. carinata accession and successfully transferred it into Arabidopsis thaliana. The subcellular localization results demonstrated that BcaSOD1 was primarily located in the plasma membrane, mitochondria and nucleus. Overexpression of BcaSOD1 in transgenic Arabidopsis (OE) effectively decreased the toxicity caused by Cd stress. Compared to the WT (wild type lines), the OE lines exhibited significantly increased activities of antioxidant enzymes (APX, CAT, POD, and SOD) after exposure to 2.5 mM CdCl2. The Cd content of underground (root) in the OE line was dominantly higher than that in the WT; however, the Cd content of aboveground (shoot) was comparable between the OE and WT types. Moreover, the qRT‒PCR results showed that several heavy metal detoxification-related genes (AtIREG2, AtMTP3, AtHMA3, and AtNAS4) were significantly upregulated in the roots of OE lines under Cd treatment, suggesting that these genes are likely involved in Cd absorption in the roots of OE lines. In addition, both comparable transcriptome and qRT-PCR analyses revealed that exogenous BcaSOD1 noticeably facilitates detoxification by stimulating the expression of two arginine (Arg) biosynthesis genes (AtGDH1 and AtGDH2) while inhibiting the expression of AtARGAH1, a negative regulator in biosynthesis of Arg. The Arg content was subsequently confirmed to be significantly enhanced in OE lines under Cd treatment, indicating that BcaSOD1 likely strengthened Cd tolerance by regulating the expression of Arg-related genes. This study demonstrates that BcaSOD1 can enhance Cd tolerance and reveals the molecular mechanism of this gene, providing valuable insights into the molecular mechanism of Cd tolerance in plants.
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Affiliation(s)
- Biao Pang
- School of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China
| | - Dan Zuo
- School of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China
| | - Tinghai Yang
- School of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China
| | - Junxing Yu
- School of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China
| | - Lizhou Zhou
- School of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China
| | - Yunyan Hou
- School of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China
| | - Jie Yu
- School of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China
| | - Lvlan Ye
- School of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China
| | - Lei Gu
- School of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China
| | - Hongcheng Wang
- School of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China
| | - Xuye Du
- School of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China
| | - Yingliang Liu
- School of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China.
| | - Bin Zhu
- School of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China.
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Bhatta D, Adhikari A, Kang SM, Kwon EH, Jan R, Kim KM, Lee IJ. Hormones and the antioxidant transduction pathway and gene expression, mediated by Serratia marcescens DB1, lessen the lethality of heavy metals (As, Ni, and Cr) in Oryza sativa L. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 263:115377. [PMID: 37597286 DOI: 10.1016/j.ecoenv.2023.115377] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Revised: 08/11/2023] [Accepted: 08/13/2023] [Indexed: 08/21/2023]
Abstract
Microorganisms have recently gained recognition as efficient biological tool for reducing heavy metal toxicity in crops. In this experiment, we isolated a potent heavy metal (As, Ni, and Cr) resistant rhizobacterium Serratia marcescens DB1 and detected its plant growth promoting traits such as phosphate solubilization, gibberellin synthesis, organic acid production and amino acid regulation. Based on these findings, DB1 was further investigated for application in a rice var. Hwayeongbyeo subjected to 1 mM As, 4 mM Ni, and 4 mM Cr stress. The rice plants treated with Cr and Ni appeared healthy but were lethal, indicating unfitness for consumption due to toxic metal deposition, whereas the plants treated with > 1 mM As instantaneously died. Our results showed that DB1 inoculation significantly decreased metal accumulation in the rice shoots. Particularly, Cr uptake dropped by 16.55% and 22.12% in (Cr + DB1) and (Cr + As + Ni + DB1), respectively, As dropped by 48.90% and 35.82% in (As + DB1) and (Cr + As + Ni + DB1), respectively, and Ni dropped by 7.95% and 19.56% in (Ni + DB1) and (Cr + As + Ni + DB1), respectively. These findings were further validated by gene expression analysis results, which showed that DB1 inoculation significantly decreased the expression of OsPCS1 (a phytochelatin synthase gene), OsMTP1 (a metal transporting gene), and OsMTP5 (a gene for the expulsion of excess metal). Moreover, DB1 inoculation considerably enhanced the morphological growth of rice through modulation of endogenous phytohormones (abscisic acid, salicylic acid, and jasmonic acid) and uptake of essential elements such as K and P. These findings indicate that DB1 is an effective biofertilizer that can mitigate heavy metal toxicity in rice crops.
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Affiliation(s)
- Dibya Bhatta
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, South Korea
| | - Arjun Adhikari
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, South Korea
| | - Sang-Mo Kang
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, South Korea
| | - Eun-Hae Kwon
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, South Korea
| | - Rahmatullah Jan
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, South Korea
| | - Kyung-Min Kim
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, South Korea
| | - In-Jung Lee
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, South Korea.
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Iqbal A, Mo Z, Pan SG, Qi JY, Hua T, Imran M, Duan M, Gu Q, Yao XB, Tang X. Exogenous TiO 2 Nanoparticles Alleviate Cd Toxicity by Reducing Cd Uptake and Regulating Plant Physiological Activity and Antioxidant Defense Systems in Rice ( Oryza sativa L.). Metabolites 2023; 13:765. [PMID: 37367921 DOI: 10.3390/metabo13060765] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Revised: 06/10/2023] [Accepted: 06/13/2023] [Indexed: 06/28/2023] Open
Abstract
Cadmium (Cd) is a potentially hazardous element with significant biological toxicity, negatively affecting plant growth and physio-biochemical metabolism. Thus, it is necessary to examine practical and eco-friendly approaches to reduce Cd toxicity. Titanium dioxide nanoparticles (TiO2-NPs) are growth regulators that help in nutrient uptake and improve plant defense systems against abiotic and biological stress. A pot experiment was performed in the late rice-growing season (July-November) 2022 to explore the role of TiO2-NPs in relieving Cd toxicity on leaf physiological activity, biochemical attributes, and plant antioxidant defense systems of two different fragrant rice cultivars, i.e., Xiangyaxiangzhan (XGZ) and Meixiangzhan-2 (MXZ-2). Both cultivars were cultivated under normal and Cd-stress conditions. Different doses of TiO2-NPs with and without Cd-stress conditions were studied. The treatment combinations were: Cd-, 0 mg/kg CdCl2·2.5 H2O; Cd+, 50 mg/kg CdCl2·2.5 H2O; Cd + NP1, 50 mg/kg Cd + 50 TiO2-NPs mg/L; Cd + NP2, 50 mg/kg Cd + 100 TiO2-NPs mg/L; Cd + NP3, 50 mg/kg Cd + 200 TiO2-NPs mg/L; Cd + NP4, 50 mg/kg Cd + 400 TiO2-NPs mg/L. Our results showed that the Cd stress significantly (p < 0.05) decreased leaf photosynthetic efficiency, stomatal traits, antioxidant enzyme activities, and the expression of their encoding genes and protein content. Moreover, Cd toxicity destabilized plant metabolism owing to greater accretion of hydrogen peroxide (H2O2) and malondialdehyde (MDA) levels at vegetative and reproductive stages. However, TiO2-NPs application improved leaf photosynthetic efficacy, stomatal traits, and protein and antioxidant enzyme activities under Cd toxicity. Application of TiO2-NPs decreased the uptake and accumulation of Cd in plants and levels of H2O2 and MDA, thereby helping to relieve Cd-induced peroxidation damage of leaf membrane lipids by enhancing the activities of different enzymes like ascorbate peroxidase (APX), catalase (CAT), peroxidase (POS), and superoxide dismutase (SOD). Average increases in SOD, APX, CAT, and POS activities of 120.5 and 110.4%, 116.2 and 123.4%, 41.4 and 43.8%, and 36.6 and 34.2% in MXZ-2 and XGZ, respectively, were noted in Cd + NP3 treatment across the growth stages as compared with Cd-stressed plants without NPs. Moreover, the correlation analysis revealed that the leaf net photosynthetic rate is strongly associated with leaf proline and soluble protein content, suggesting that a higher net photosynthetic rate results in higher leaf proline and soluble protein content. Of the treatments, the Cd + NP3 (50 mg/kg Cd + 200 mg/L TiO2-NPs) performed the best for both fragrant rice cultivars under Cd toxicity. Our results showed that TiO2-NPs strengthened rice metabolism through an enhanced antioxidant defense system across the growth stages, thereby improving plant physiological activity and biochemical characteristics under Cd toxicity.
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Affiliation(s)
- Anas Iqbal
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China
- Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture and Rural Affairs, Guangzhou 510642, China
- Guangzhou Key Laboratory for Science and Technology of Fragrant Rice, Guangzhou 510642, China
| | - Zhaowen Mo
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China
- Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture and Rural Affairs, Guangzhou 510642, China
- Guangzhou Key Laboratory for Science and Technology of Fragrant Rice, Guangzhou 510642, China
| | - Sheng-Gang Pan
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China
- Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture and Rural Affairs, Guangzhou 510642, China
- Guangzhou Key Laboratory for Science and Technology of Fragrant Rice, Guangzhou 510642, China
| | - Jian-Ying Qi
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China
- Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture and Rural Affairs, Guangzhou 510642, China
- Guangzhou Key Laboratory for Science and Technology of Fragrant Rice, Guangzhou 510642, China
| | - Tian Hua
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China
- Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture and Rural Affairs, Guangzhou 510642, China
- Guangzhou Key Laboratory for Science and Technology of Fragrant Rice, Guangzhou 510642, China
| | - Muhammad Imran
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China
- Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture and Rural Affairs, Guangzhou 510642, China
- Guangzhou Key Laboratory for Science and Technology of Fragrant Rice, Guangzhou 510642, China
| | - Meiyang Duan
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China
- Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture and Rural Affairs, Guangzhou 510642, China
- Guangzhou Key Laboratory for Science and Technology of Fragrant Rice, Guangzhou 510642, China
| | - Qichang Gu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China
- Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture and Rural Affairs, Guangzhou 510642, China
- Guangzhou Key Laboratory for Science and Technology of Fragrant Rice, Guangzhou 510642, China
| | - Xiang-Bin Yao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China
- Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture and Rural Affairs, Guangzhou 510642, China
- Guangzhou Key Laboratory for Science and Technology of Fragrant Rice, Guangzhou 510642, China
| | - Xiangru Tang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China
- Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture and Rural Affairs, Guangzhou 510642, China
- Guangzhou Key Laboratory for Science and Technology of Fragrant Rice, Guangzhou 510642, China
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5
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Wang S, Yao H, Li L, Du H, Guo P, Wang D, Rennenberg H, Ma M. Differentially-expressed genes related to glutathione metabolism and heavy metal transport reveals an adaptive, genotype-specific mechanism to Hg 2+ exposure in rice (Oryza sativa L.). ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 324:121340. [PMID: 36828354 DOI: 10.1016/j.envpol.2023.121340] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 10/21/2022] [Accepted: 02/21/2023] [Indexed: 06/18/2023]
Abstract
Rice consumption is an essential cause of mercury (Hg) exposure for humans in Asia. However, the mechanism of Hg transport and accumulation in rice plants (Oryza sativa L.) remains unclear. Here, rice genotypes with contrasting Hg uptake and translocation abilities, i.e. H655 (high Hg-accumulator) and H767 (low Hg-accumulator), were selected from 261 genotypes. Through comparative physiological and transcriptome analyses, we investigated the processes responsible for the relationship between Hg accumulation, transport and tolerance. The results showed significant stimulation of antioxidative metabolism, particularly glutathione (GSH) accumulation, and up-regulated expression of regulatory genes of glutathione metabolism for H655, but not for H767. In addition, up-regulated expression of GSH S-transferase (GST) and OsPCS1 in H655 that catalyzes the binding of Hg and GSH, enhances the Hg detoxification capacity, while high-level expression of YSL2 in H655 enhances the transport ability for Hg. Conclusively, Hg accumulation in rice is a consequence of enhanced expression of genes related to Hg binding with GSH and Hg transport. With these results, the present study contributes to the selection of rice genotypes with limited Hg accumulation and to the mitigation of Hg migration in food chains thereby enhancing nutritional safety of Hg-polluted rice fields.
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Affiliation(s)
- Shufeng Wang
- Center of Molecular Ecophysiology (CMEP), College of Resources and Environment, Southwest University, Chongqing, 400715, China
| | - Hesheng Yao
- College of Agronomy and Biotechnology, Southwest University, Chongqing, 400715, China
| | - Lingyi Li
- College of Agronomy and Biotechnology, Southwest University, Chongqing, 400715, China
| | - Hongxia Du
- Chongqing Key Laboratory of Bio-resource for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Pan Guo
- Center of Molecular Ecophysiology (CMEP), College of Resources and Environment, Southwest University, Chongqing, 400715, China
| | - Dingyong Wang
- Chongqing Key Laboratory of Agricultural Resources and Environment, College of Resources and Environment, Chongqing 400715, China
| | - Heinz Rennenberg
- Center of Molecular Ecophysiology (CMEP), College of Resources and Environment, Southwest University, Chongqing, 400715, China
| | - Ming Ma
- Center of Molecular Ecophysiology (CMEP), College of Resources and Environment, Southwest University, Chongqing, 400715, China.
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6
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Li G, Yan L, Chen X, Lam SS, Rinklebe J, Yu Q, Yang Y, Peng W, Sonne C. Phytoremediation of cadmium from soil, air and water. CHEMOSPHERE 2023; 320:138058. [PMID: 36746249 DOI: 10.1016/j.chemosphere.2023.138058] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Revised: 01/31/2023] [Accepted: 02/03/2023] [Indexed: 06/18/2023]
Abstract
Potentially toxic elements (PTEs) pose a great threat to ecosystems and long-term exposure causes adverse effects to wildlife and humans. Cadmium induces a variety of diseases including cancer, kidney dysfunction, bone lesions, anemia and hypertension. Here we review the ability of plants to accumulate cadmium from soil, air and water under different environmental conditions, focusing on absorption mechanisms and factors affecting these. Cadmium possess various transport mechanisms and pathways roughly divided into symplast and apoplast pathway. Excessive cadmium concentrations in the environment affects soil properties, pH and microorganism composition and function and thereby plant uptake. At the same time, plants resist cadmium toxicity by antioxidant reaction. The differences in cadmium absorption capacity of plants need more exploration to determine whether it is beneficial for crop breeding or genetic modification. Identify whether plants have the potential to become hyperaccumulator and avoid excessive cadmium uptake by edible plants. The use of activators such as wood vinegar, GLDA (Glutamic acid diacetic acid), or the placement of earthworms and fungi can speed up phytoremediation of plants, thereby reducing uptake of crop varieties and reducing human exposure, thus accelerating food safety and the health of the planet.
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Affiliation(s)
- Guanyan Li
- Henan Province International Collaboration /Lab of Forest Resources Utilization, School of Forestry, Henan Agricultural University, Zhengzhou, 450002, China
| | - Lijun Yan
- Henan Province International Collaboration /Lab of Forest Resources Utilization, School of Forestry, Henan Agricultural University, Zhengzhou, 450002, China
| | - Xiangmeng Chen
- Henan Province International Collaboration /Lab of Forest Resources Utilization, School of Forestry, Henan Agricultural University, Zhengzhou, 450002, China.
| | - Su Shiung Lam
- Higher Institution Centre of Excellence (HICoE), Institute of Tropical Aquaculture and Fisheries (AKUATROP), Universiti Malaysia Terengganu, 21030 Kuala Nerus, Terengganu, Malaysia; Center for Transdisciplinary Research, Saveetha Institute of Medical and Technical Sciences, Saveetha University, Chennai, India; University Centre for Research and Development, Department of Chemistry, Chandigarh University, Gharuan, Mohali, Punjab, India
| | - Jörg Rinklebe
- University of Wuppertal, School of Architecture and Civil Engineering, Institute of Foundation Engineering, Water and Waste Management, Laboratory of Soil and Groundwater Management, Pauluskirchstraße 7, 42285, Wuppertal, Germany
| | - Qing Yu
- Henan Province International Collaboration /Lab of Forest Resources Utilization, School of Forestry, Henan Agricultural University, Zhengzhou, 450002, China
| | - Yafeng Yang
- Henan Province International Collaboration /Lab of Forest Resources Utilization, School of Forestry, Henan Agricultural University, Zhengzhou, 450002, China
| | - Wanxi Peng
- Henan Province International Collaboration /Lab of Forest Resources Utilization, School of Forestry, Henan Agricultural University, Zhengzhou, 450002, China.
| | - Christian Sonne
- Department of Ecoscience, Arctic Research Centre (ARC), Aarhus University, Frederiksborgvej 399, PO Box 358, 4000, Roskilde, Denmark; Sustainability Cluster, School of Engineering, University of Petroleum & Energy Studies, Dehradun, Uttarakhand 248007, India.
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7
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Zulfiqar U, Jiang W, Xiukang W, Hussain S, Ahmad M, Maqsood MF, Ali N, Ishfaq M, Kaleem M, Haider FU, Farooq N, Naveed M, Kucerik J, Brtnicky M, Mustafa A. Cadmium Phytotoxicity, Tolerance, and Advanced Remediation Approaches in Agricultural Soils; A Comprehensive Review. FRONTIERS IN PLANT SCIENCE 2022; 13:773815. [PMID: 35371142 PMCID: PMC8965506 DOI: 10.3389/fpls.2022.773815] [Citation(s) in RCA: 56] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Accepted: 02/02/2022] [Indexed: 05/03/2023]
Abstract
Cadmium (Cd) is a major environmental contaminant due to its widespread industrial use. Cd contamination of soil and water is rather classical but has emerged as a recent problem. Cd toxicity causes a range of damages to plants ranging from germination to yield suppression. Plant physiological functions, i.e., water interactions, essential mineral uptake, and photosynthesis, are also harmed by Cd. Plants have also shown metabolic changes because of Cd exposure either as direct impact on enzymes or other metabolites, or because of its propensity to produce reactive oxygen species, which can induce oxidative stress. In recent years, there has been increased interest in the potential of plants with ability to accumulate or stabilize Cd compounds for bioremediation of Cd pollution. Here, we critically review the chemistry of Cd and its dynamics in soil and the rhizosphere, toxic effects on plant growth, and yield formation. To conserve the environment and resources, chemical/biological remediation processes for Cd and their efficacy have been summarized in this review. Modulation of plant growth regulators such as cytokinins, ethylene, gibberellins, auxins, abscisic acid, polyamines, jasmonic acid, brassinosteroids, and nitric oxide has been highlighted. Development of plant genotypes with restricted Cd uptake and reduced accumulation in edible portions by conventional and marker-assisted breeding are also presented. In this regard, use of molecular techniques including identification of QTLs, CRISPR/Cas9, and functional genomics to enhance the adverse impacts of Cd in plants may be quite helpful. The review's results should aid in the development of novel and suitable solutions for limiting Cd bioavailability and toxicity, as well as the long-term management of Cd-polluted soils, therefore reducing environmental and human health hazards.
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Affiliation(s)
- Usman Zulfiqar
- Department of Agronomy, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - Wenting Jiang
- College of Life Sciences, Yan’an University, Yan’an, China
| | - Wang Xiukang
- College of Life Sciences, Yan’an University, Yan’an, China
| | - Saddam Hussain
- Department of Agronomy, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - Muhammad Ahmad
- Department of Agronomy, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | | | - Nauman Ali
- Agronomic Research Institute, Ayub Agricultural Research Institute, Faisalabad, Pakistan
| | - Muhammad Ishfaq
- Department of Agronomy, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - Muhammad Kaleem
- Department of Botany, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - Fasih Ullah Haider
- College of Resources and Environmental Sciences, Gansu Agricultural University, Lanzhou, China
| | - Naila Farooq
- Department of Soil and Environmental Science, College of Agriculture, University of Sargodha, Sargodha, Pakistan
| | - Muhammad Naveed
- Institute of Soil and Environmental Science, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - Jiri Kucerik
- Institute of Chemistry and Technology of Environmental Protection, Faculty of Chemistry, Brno University of Technology, Brno, Czechia
| | - Martin Brtnicky
- Institute of Chemistry and Technology of Environmental Protection, Faculty of Chemistry, Brno University of Technology, Brno, Czechia
- Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of AgriSciences, Mendel University in Brno, Brno, Czechia
| | - Adnan Mustafa
- Institute of Chemistry and Technology of Environmental Protection, Faculty of Chemistry, Brno University of Technology, Brno, Czechia
- Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of AgriSciences, Mendel University in Brno, Brno, Czechia
- Institute for Environmental Studies, Faculty of Science, Charles University in Prague, Prague, Czechia
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8
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Faizan M, Bhat JA, Hessini K, Yu F, Ahmad P. Zinc oxide nanoparticles alleviates the adverse effects of cadmium stress on Oryza sativa via modulation of the photosynthesis and antioxidant defense system. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2021; 220:112401. [PMID: 34118747 DOI: 10.1016/j.ecoenv.2021.112401] [Citation(s) in RCA: 50] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2021] [Revised: 05/10/2021] [Accepted: 05/31/2021] [Indexed: 05/15/2023]
Abstract
Cadmium (Cd) is a trace element causing severe toxicity symptoms in plants, besides posing hazardous fitness issue due to its buildup in the human body through food chain. Nanoparticles (NPs) are recently employed as a novel strategy to directly ameliorate the Cd stress and acted as nano-fertilizers. The intend of the current study was to explore the effects of zinc oxide nanoparticles (ZnO-NPs; 50 mg/L) on plant growth, photosynthetic activity, elemental status and antioxidant activity in Oryza sativa (rice) under Cd (0.8 mM) stress. To this end, the rice plants are treated by Cd stress at 15 days after sowing (DAS), and the treatment was given directly into the soil. Supply of ZnO-NPs as foliar spray was given for five consecutive days from 30 to 35 DAS, and sampling was done at 45 DAS. However, rice plants supplemented with ZnO-NPs under the Cd toxicity revealed significantly increased shoot length (SL; 34.0%), root fresh weight (RFW; 30.0%), shoot dry weight (SDW; 23.07%), and root dry weight (RDW; 12.24%). Moreover, the ZnO-NPs supplement has also positive effects on photosynthesis related parameters, SPAD value (40%), chloroplast structure, and qualitatively high fluorescence observed by confocal microscopy even under Cd stress. ZnO-NPs also substantially prevented the increases of hydrogen peroxide (H2O2) and malondialdehyde (MDA) triggered by Cd. Physiological and biochemical analysis showed that ZnO-NPs increased enzymatic activities of superoxide dismutase (SOD; 59%), catalase (CAT; 52%), and proline (17%) that metabolize reactive oxygen species (ROS); these increases coincided with the changes observed in the H2O2 and MDA accumulation after ZnO-NPs application. In conclusion, ZnO-NPs application to foliage has great efficiency to improve biomass, photosynthesis, protein, antioxidant enzymes activity, mineral nutrient contents and reducing Cd levels in rice. This can be attributed mainly from reduced oxidative damage resulted due to the ZnO-NPs application.
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Affiliation(s)
- Mohammad Faizan
- Collaborative Innovation Centre of Sustainable Forestry in Southern China, College of Forest Science, Nanjing Forestry University, Nanjing 210037, China
| | - Javaid Akhter Bhat
- State Key Laboratory for Crop Genetics and Germplasm Enhancement, College of Agriculture, Nanjing Agricultural University, Nanjing 210095, China.
| | - Kamel Hessini
- Department of Biology, College of Sciences, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia
| | - Fangyuan Yu
- Collaborative Innovation Centre of Sustainable Forestry in Southern China, College of Forest Science, Nanjing Forestry University, Nanjing 210037, China.
| | - Parvaiz Ahmad
- Department of Botany, S.P. College, Srinagar, Jammu and Kashmir, India.
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9
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Hussain B, Ashraf MN, Abbas A, Li J, Farooq M. Cadmium stress in paddy fields: Effects of soil conditions and remediation strategies. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 754:142188. [PMID: 33254942 DOI: 10.1016/j.scitotenv.2020.142188] [Citation(s) in RCA: 123] [Impact Index Per Article: 41.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Revised: 08/09/2020] [Accepted: 09/02/2020] [Indexed: 05/08/2023]
Abstract
Cadmium (Cd) toxicity in paddy soil and accumulation in rice plants and grains have got global concern due to its health effects. This review highlights the effects of soil factors including soil organic matter, soil pH, redox potential, and soil microbes which influencing Cd uptake by rice plant. Therefore, a comprehensive review of innovative and environmentally friendly management practices for managing Cd stress in rice is lacking. Thus, this review discusses the effect of Cd toxicity in rice and describes management strategies to offset its effects. Moreover, future research thrusts to reduce its uptake by rice has also been highlighted. Through phytoremediation, Cd may be extracted and stabilized in the soil while through microbes Cd can be sequestrated inside the microbial bodies. Increased Cd uptake in hyperaccumulator plants to remediate and convert the toxic form of Cd into non-toxic forms. While in chemical remediation, Cd can be washed out, immobilized and stabilized in the soil through chemical amendments. The organic amendments may help through an increase in soil pH, adsorption in its functional groups, the formation of complexations, and the conversion of exchangeable to residual forms. Developing rice genotypes with restricted Cd uptake and reduced accumulation in grain through conventional and marker-assisted breeding are fundamental keys for safe rice production. In this regard, the use of molecular techniques including identification of QTLs, CRISPR/Cas9, and functional genomics may be quite helpful.
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Affiliation(s)
- Babar Hussain
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Muhammad Nadeem Ashraf
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Aqleem Abbas
- State Key Laboratory of Agricultural Microbiology, Provincial Key Laboratory of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China
| | - Jumei Li
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Muhammad Farooq
- Department of Plant Sciences, College of Agricultural, Marine Sciences Sultan Qaboos University, Al-Khoud 123, Oman.
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10
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Marzec M, Situmorang A, Brewer PB, Brąszewska A. Diverse Roles of MAX1 Homologues in Rice. Genes (Basel) 2020; 11:E1348. [PMID: 33202900 PMCID: PMC7709044 DOI: 10.3390/genes11111348] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2020] [Revised: 10/30/2020] [Accepted: 11/10/2020] [Indexed: 02/07/2023] Open
Abstract
Cytochrome P450 enzymes encoded by MORE AXILLARY GROWTH1 (MAX1)-like genes produce most of the structural diversity of strigolactones during the final steps of strigolactone biosynthesis. The diverse copies of MAX1 in Oryza sativa provide a resource to investigate why plants produce such a wide range of strigolactones. Here we performed in silico analyses of transcription factors and microRNAs that may regulate each rice MAX1, and compared the results with available data about MAX1 expression profiles and genes co-expressed with MAX1 genes. Data suggest that distinct mechanisms regulate the expression of each MAX1. Moreover, there may be novel functions for MAX1 homologues, such as the regulation of flower development or responses to heavy metals. In addition, individual MAX1s could be involved in specific functions, such as the regulation of seed development or wax synthesis in rice. Our analysis reveals potential new avenues of strigolactone research that may otherwise not be obvious.
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Affiliation(s)
- Marek Marzec
- Faculty of Natural Sciences, Institute of Biology, Biotechnology and Environmental Protection, University of Silesia in Katowice, Jagiellonska 28, 40-032 Katowice, Poland;
| | - Apriadi Situmorang
- ARC Centre of Excellence in Plant Energy Biology, Waite Research Institute, School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, SA 5064, Australia; (A.S.); (P.B.B.)
| | - Philip B. Brewer
- ARC Centre of Excellence in Plant Energy Biology, Waite Research Institute, School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, SA 5064, Australia; (A.S.); (P.B.B.)
| | - Agnieszka Brąszewska
- Faculty of Natural Sciences, Institute of Biology, Biotechnology and Environmental Protection, University of Silesia in Katowice, Jagiellonska 28, 40-032 Katowice, Poland;
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11
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Liu Y, Xue Y, Xie B, Zhu S, Lu X, Liang C, Tian J. Complex gene regulation between young and old soybean leaves in responses to manganese toxicity. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 155:231-242. [PMID: 32781273 DOI: 10.1016/j.plaphy.2020.07.002] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Revised: 07/01/2020] [Accepted: 07/01/2020] [Indexed: 06/11/2023]
Abstract
Manganese (Mn) is an essential micronutrient for plant growth. However, excess manganese is toxic and inhibits crop production. Although it is widely known that physiological and molecular mechanisms underlie plant responses to Mn toxicity, few studies have been conducted to compare Mn tolerance capabilities between young and old leaves in plants; thus, the mechanisms underlying Mn tolerance in different plant tissues or organs are not fully understood. In this study, the dose responses of soybean to Mn availability were investigated. Genome-wide transcriptomic analysis was subsequently conducted to identify the differentially expressed genes (DEGs) in both young and old leaves of soybean in responses to Mn toxicity. Our results showed that excess Mn severely inhibited soybean growth and increased both Mn accumulation in and brown spots on soybean leaves, especially for the old leaves, strongly suggesting that more Mn was allocated to old leaves in soybean. Transcriptomic profiling revealed that totals of 4410 and 2258 DEGs were separately identified in young leaves and old leaves. Furthermore, only 944 DEGs were found to be commonly regulated in both young and old leaves of soybean, strongly suggesting distinct responses present in soybean young and old leaves in responses to Mn toxicity.
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Affiliation(s)
- Ying Liu
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, PR China; Department of Biotechnology, College of Coastal Agricultural Sciences, Guangdong Ocean University, Zhanjiang, 524088, PR China; Guangdong Laboratory of Lingnan Modern Agriculture, South China Agricultural University, Guangzhou, 510642, PR China
| | - Yingbin Xue
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, PR China; Department of Resources and Environmental Sciences, College of Chemistry and Environment, Guangdong Ocean University, Zhanjiang, 524088, PR China
| | - Baoxing Xie
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, PR China; Guangdong Laboratory of Lingnan Modern Agriculture, South China Agricultural University, Guangzhou, 510642, PR China
| | - Shengnan Zhu
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, PR China; Guangdong Laboratory of Lingnan Modern Agriculture, South China Agricultural University, Guangzhou, 510642, PR China
| | - Xing Lu
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, PR China; Guangdong Laboratory of Lingnan Modern Agriculture, South China Agricultural University, Guangzhou, 510642, PR China
| | - Cuiyue Liang
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, PR China; Guangdong Laboratory of Lingnan Modern Agriculture, South China Agricultural University, Guangzhou, 510642, PR China.
| | - Jiang Tian
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, PR China; Guangdong Laboratory of Lingnan Modern Agriculture, South China Agricultural University, Guangzhou, 510642, PR China.
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12
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Ma QJ, Sun MH, Lu J, Hu DG, Kang H, You CX, Hao YJ. Phosphorylation of a malate transporter promotes malate excretion and reduces cadmium uptake in apple. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:3437-3449. [PMID: 32147696 PMCID: PMC7475249 DOI: 10.1093/jxb/eraa121] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Accepted: 03/02/2020] [Indexed: 05/27/2023]
Abstract
Heavy metal contamination is a major environmental and human health hazard in many areas of the world. Organic acids sequester heavy metals and protect plant roots from the effects of toxicity; however, it is largely unknown how these acids are regulated in response to heavy metal stress. Here, protein kinase SOS2L1 from apple was functionally characterized. MdSOS2L1 was found to be involved in the regulation of malate excretion, and to inhibit cadmium uptake into roots. Using the DUAL membrane system in a screen of an apple cDNA library with MdSOS2L1 as bait, a malate transporter, MdALMT14, was identified as an interactor. Bimolecular fluorescence complementation, pull-down, and co-immunoprecipitation assays further indicated the interaction of the two proteins. Transgenic analyses showed that MdSOS2L1 is required for cadmium-induced phosphorylation at the Ser358 site of MdALMT14, a modification that enhanced the stability of the MdALMT14 protein. MdSOS2L1 was also shown to enhance cadmium tolerance in an MdALMT14-dependent manner. This study sheds light on the roles of the MdSOS2L1-MdALMT14 complex in physiological responses to cadmium toxicity.
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Affiliation(s)
- Qi-Jun Ma
- National Key Laboratory of Crop Biology, MOA Key Laboratory of Horticultural Crop Biology and Germplasm Innovation in Huanghuai Region, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai-An, Shandong, China
- Department of Plant Biology, Department of Horticulture, Michigan State University, East Lansing, MI, USA
| | - Mei-Hong Sun
- Development Center of Plant Germplasm Resources, College of Life Sciences, Shanghai Normal University, Shanghai, China
| | - Jing Lu
- National Key Laboratory of Crop Biology, MOA Key Laboratory of Horticultural Crop Biology and Germplasm Innovation in Huanghuai Region, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai-An, Shandong, China
| | - Da-Gang Hu
- National Key Laboratory of Crop Biology, MOA Key Laboratory of Horticultural Crop Biology and Germplasm Innovation in Huanghuai Region, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai-An, Shandong, China
| | - Hui Kang
- National Key Laboratory of Crop Biology, MOA Key Laboratory of Horticultural Crop Biology and Germplasm Innovation in Huanghuai Region, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai-An, Shandong, China
| | - Chun-Xiang You
- National Key Laboratory of Crop Biology, MOA Key Laboratory of Horticultural Crop Biology and Germplasm Innovation in Huanghuai Region, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai-An, Shandong, China
| | - Yu-Jin Hao
- National Key Laboratory of Crop Biology, MOA Key Laboratory of Horticultural Crop Biology and Germplasm Innovation in Huanghuai Region, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai-An, Shandong, China
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13
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Xu X, Zhang S, Cheng Z, Li T, Jia Y, Wang G, Yang Z, Xian J, Yang Y, Zhou W. Transcriptome analysis revealed cadmium accumulation mechanisms in hyperaccumulator Siegesbeckia orientalis L. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:18853-18865. [PMID: 32207009 DOI: 10.1007/s11356-020-08387-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Accepted: 03/10/2020] [Indexed: 05/28/2023]
Abstract
Siegesbeckia orientalis L. was identified as a novel Cd-hyperaccumulator and valuable phytoremediation material. However, the molecular mechanisms underlying Cd accumulation in S. orientalis are largely unknown. In this study, RNA-Seq analysis was performed to study the Cd-accumulating mechanisms in its roots with or without Cd treatment. The RNA-seq analysis generated 312 million pairs of clean reads and 78G sequencing data. De novo transcriptome assembly produced 355,070 transcripts with an average length of 823.59 bp and 194,207 unigenes with an average length of 605.68 bp. Comparative transcriptome analyses identified a large number of differentially expressed genes in roots under Cd stress, and functional annotation suggested that S. orientalis utilizes various biological pathways involving many gene networks working simultaneously to cope with the stress. This study revealed that four biological pathways were mainly involved in S. orientalis tolerance to Cd stress, including reactive oxygen species scavenging, phenylpropanoid biosynthesis pathway, Cd absorption and transport, and ABA signaling pathway. The genes related to photosynthesis and heavy metal transport are likely the potential candidates and could be further investigated to determine their roles in Cd tolerance in S. orientalis roots. These findings will be useful to understand the Cd accumulation mechanisms in S. orientalis and facilitate the study of phytoremediation at the molecular level in plants.
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Affiliation(s)
- Xiaoxun Xu
- School of Environment Sciences, Sichuan Agricultural University, Chengdu, 611130, China
- Key Laboratory of Soil Environment Protection of Sichuan Province, Sichuan Agricultural University, Chengdu, 611130, China
| | - Shirong Zhang
- School of Environment Sciences, Sichuan Agricultural University, Chengdu, 611130, China.
- Key Laboratory of Soil Environment Protection of Sichuan Province, Sichuan Agricultural University, Chengdu, 611130, China.
| | - Zhang Cheng
- School of Environment Sciences, Sichuan Agricultural University, Chengdu, 611130, China
| | - Ting Li
- College of Resources, Sichuan Agricultural University, Chengdu, 611130, China
| | - Yongxia Jia
- College of Resources, Sichuan Agricultural University, Chengdu, 611130, China
| | - Guiyin Wang
- School of Environment Sciences, Sichuan Agricultural University, Chengdu, 611130, China
- Key Laboratory of Soil Environment Protection of Sichuan Province, Sichuan Agricultural University, Chengdu, 611130, China
| | - Zhanbiao Yang
- School of Environment Sciences, Sichuan Agricultural University, Chengdu, 611130, China
| | - Junren Xian
- School of Environment Sciences, Sichuan Agricultural University, Chengdu, 611130, China
| | - Yuanxiang Yang
- School of Environment Sciences, Sichuan Agricultural University, Chengdu, 611130, China
| | - Wei Zhou
- College of Resources, Sichuan Agricultural University, Chengdu, 611130, China
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14
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Impact of Titanium Dioxide Nanoparticles on Cd Phytotoxicity and Bioaccumulation in Rice ( Oryza sativa L.). INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 17:ijerph17092979. [PMID: 32344831 PMCID: PMC7246507 DOI: 10.3390/ijerph17092979] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/10/2020] [Revised: 04/20/2020] [Accepted: 04/23/2020] [Indexed: 11/30/2022]
Abstract
The impact of engineered nanoparticles (ENPs) on the migration and toxicity of coexisting pollutants is still unclear, especially in soil media. This study aims to evaluate the impact of titanium dioxide nanoparticles (TiO2 NPs) on the phytotoxicity of cadmium (Cd) to Oryza sativa L., and the migration of cadmium (Cd) in the soil-rice system. Three different Cd stress groups (C1 group: 1.0 mg kg−1, C2 group: 2.5 mg kg−1 and C3 group: 5.0 mg kg−1) were set in the pot experiment, and the target concentration of TiO2 NPs in each group were 0 mg kg−1 (T0), 50 mg kg−1 (T1), 100 mg kg−1 (T2) and 500 mg kg−1 (T3). Plant height and biomass decreased with the increasing of Cd content in paddy soil. TiO2 NPs could lower the phytotoxicity of Cd in terms of the changes in the morphological and biochemical characteristics, especially in the tillering and booting stage. In the tillering stage, TiO2 NPs addition caused a significant increase in plant height, biomass and the total chlorophyll content in the leaves of Oryza saliva L. In the booting stage, TiO2 NPs addition caused a 15% to 32% and 24% to 48% reduction of malondialdehyde (MDA) content for the C2 and C3 group, respectively, compared to that of the respective control treatment (T0). TiO2-NPs addition reduced the activity of peroxidase (POD) in the leaves in the booting and heading stage, and the activity of catalase (CAT) in the tillering stage. In the C1 and C2 group, the grain Cd content in the 100 and 500 mg kg−1 TiO2 NPs treatments reached 0.47–0.84 mg kg−1, obviously higher than that of the treatment without TiO2 NPs (0.27–0.32 mg kg−1), suggesting that TiO2-NPs could promote Cd migration in the soil-rice system.
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15
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Sun Y, Lu Q, Cao Y, Wang M, Cheng X, Yan Q. Comparative Transcriptome Analysis of the Molecular Mechanism of the Hairy Roots of Brassica campestris L. in Response to Cadmium Stress. Int J Mol Sci 2019; 21:ijms21010180. [PMID: 31888010 PMCID: PMC6981690 DOI: 10.3390/ijms21010180] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Revised: 12/20/2019] [Accepted: 12/20/2019] [Indexed: 02/07/2023] Open
Abstract
Brassica campestris L., a hyperaccumulator of cadmium (Cd), is considered a candidate plant for efficient phytoremediation. The hairy roots of Brassica campestris L are chosen here as a model plant system to investigate the response mechanism of Brassica campestris L. to Cd stress. High-throughput sequencing technology is used to identify genes related to Cd tolerance. A total of 2394 differentially expressed genes (DEGs) are identified by RNA-Seq analysis, among which 1564 genes are up-regulated, and 830 genes are down-regulated. Data from the gene ontology (GO) analysis indicate that DEGs are mainly involved in metabolic processes. Glutathione metabolism, in which glutathione synthetase and glutathione S-transferase are closely related to Cd stress, is identified in the Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. A Western blot shows that glutathione synthetase and glutathione S-transferase are involved in Cd tolerance. These results provide a preliminary understanding of the Cd tolerance mechanism of Brassica campestris L. and are, hence, of particular importance to the future development of an efficient phytoremediation process based on hairy root cultures, genetic modification, and the subsequent regeneration of the whole plant.
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Affiliation(s)
| | | | | | | | - Xiyu Cheng
- Correspondence: (X.C.); (Q.Y.); Tel.: +86-138-1027-4418 (X.C.); +86-138-1093-8871 (Q.Y.)
| | - Qiong Yan
- Correspondence: (X.C.); (Q.Y.); Tel.: +86-138-1027-4418 (X.C.); +86-138-1093-8871 (Q.Y.)
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16
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Rekik I, Chaâbene Z, Kriaa W, Rorat A, Franck V, Hafedh M, Elleuch A. Transcriptome assembly and abiotic related gene expression analysis of date palm reveal candidate genes involved in response to cadmium stress. Comp Biochem Physiol C Toxicol Pharmacol 2019; 225:108569. [PMID: 31302231 DOI: 10.1016/j.cbpc.2019.108569] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/26/2019] [Revised: 07/03/2019] [Accepted: 07/09/2019] [Indexed: 10/26/2022]
Abstract
Date palm in Tunisia is of major economic importance but are also factors of social, environmental and economic stability. An annotated assembly of the transcriptome of cultivar Deglet Nour was reported. RNA was isolated from plant Cd-contaminated leaves, and 37,049 unique Illumina RNA-seq reads were used in a transcriptome assembly. The draft transcriptome assembly consists of 6789 contigs and 17.285 singletons with a means length of 858 bp and 1.042 bp, respectively. The final assembly was functionally annotated using Blast2GO software, allowing the identification of putative genes controlling important agronomic traits. The annotated transcriptome data sets were used to query all known Kyoto Encyclopedia of Genes and Genomes pathways. The most represented molecular functions and biological processes were nucleotide binding and transcription, transport and response to stress and abiotic and biotic stimuli. A prediction of the genes interaction network was proposed by selecting corresponding functionally similar genes from Arabidopsis datasets, downloaded by GeneMANIA version 2.1. Several Cd-responsive genes expression was monitored in in vitro isolated explant of Cd stressed Deglet Nour. Some chelators encoding genes were upregulated confirming in silico findings. Genes encoding HMs transporters in date palm showed expression enhancement more pronounced after 20 days of exposure. P. dactylifera transcriptome provides a valuable resource for future functional analysis of candidate genes involved in metal stress response.
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Affiliation(s)
- Imen Rekik
- High Institute of Applied Biology of Medenine, Tunisia; Laboratory of Plant Biotechnology, Faculty of Sciences of Sfax, University of Sfax, Tunisia
| | - Zayneb Chaâbene
- Laboratory of Plant Biotechnology, Faculty of Sciences of Sfax, University of Sfax, Tunisia; Laboratoire de Génie Civil et géo-Environnement - Université de Lille 1, F-59655 Villeneuve d'Ascq, France
| | - Walid Kriaa
- Laboratory of Plant Biotechnology, Faculty of Sciences of Sfax, University of Sfax, Tunisia; Environmental Science Center, Qatar University, PO. Box 2713, Doha, Qatar
| | - Agnieszka Rorat
- Laboratoire de Génie Civil et géo-Environnement - Université de Lille 1, F-59655 Villeneuve d'Ascq, France
| | - Vandenbulcke Franck
- Laboratoire de Génie Civil et géo-Environnement - Université de Lille 1, F-59655 Villeneuve d'Ascq, France.
| | - Mejdoub Hafedh
- Laboratory of Plant Biotechnology, Faculty of Sciences of Sfax, University of Sfax, Tunisia
| | - Amine Elleuch
- Laboratory of Plant Biotechnology, Faculty of Sciences of Sfax, University of Sfax, Tunisia
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17
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Zhang W, Long J, Li J, Zhang M, Xiao G, Ye X, Chang W, Zeng H. Impact of ZnO nanoparticles on Cd toxicity and bioaccumulation in rice (Oryza sativa L.). ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:23119-23128. [PMID: 31183760 DOI: 10.1007/s11356-019-05551-x] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2018] [Accepted: 05/22/2019] [Indexed: 06/09/2023]
Abstract
With the widespread use of metal oxide nanoparticles (MNPs), agricultural soil is gradually becoming a primary sink for MNPs. The effect of these nanoparticles on the fate and the toxicity of co-existing heavy metals is largely unknown. In this paper, pot experiments were conducted to evaluate the impact of ZnO nanoparticles (ZnO-NPs) on Cd toxicity and bioaccumulation in a soil-rice system. Different amounts of ZnO-NPs were added to three different levels of Cd-contaminated paddy soil (L-Cd, 1.0 mg kg-1; M-Cd, 2.5 mg kg-1; H-Cd, 5.0 mg kg-1). The results showed that the addition of ZnO-NPs significantly increased the soil pH value, and the soil pH value increased with the increase in ZnO-NP concentration. Reductions in plant height and biomass under Cd stress were recovered and increased after the addition of ZnO-NPs; the addition of ZnO-NP promoted rice biomass increased by 13~22% and 25~43% in the M-Cd and H-Cd groups, respectively, compared with that of the respective control treatment. A high concentration of ZnO-NPs could increase the concentration of bioavailable Cd in rhizosphere soil. In the L-Cd group, the Cd concentration of the rice in the L-Z500 treatment increased to 0.51 mg kg-1, exceeding the limit for acceptable Cd concentrations in rice of China (0.2 mg kg-1). This work revealed that ZnO-NPs could improve plant growth, especially in the early-growth stage, and alleviate the toxic effects of Cd. However, the addition of high-concentration (500 mg kg-1) ZnO-NPs in the lower Cd pollution soil could significantly facilitate the accumulation of Cd by Oryza sativa L.
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Affiliation(s)
- Wei Zhang
- School of Urban Planning and Design, Peking University Shenzhen Graduate School, Shenzhen, 518055, China
| | - Jinghua Long
- School of Public Administration, Hebei University of Economics and Business, Shijiazhuang, 050061, China
| | - Jie Li
- College of Land and Environment, Shenyang Agricultural University, Shenyang, 110866, China
| | - Meng Zhang
- School of Urban Planning and Design, Peking University Shenzhen Graduate School, Shenzhen, 518055, China
| | - Guoliang Xiao
- School of Urban Planning and Design, Peking University Shenzhen Graduate School, Shenzhen, 518055, China
| | - Xingyin Ye
- School of Urban Planning and Design, Peking University Shenzhen Graduate School, Shenzhen, 518055, China
| | - Wenjing Chang
- School of Urban Planning and Design, Peking University Shenzhen Graduate School, Shenzhen, 518055, China
| | - Hui Zeng
- School of Urban Planning and Design, Peking University Shenzhen Graduate School, Shenzhen, 518055, China.
- School of Urban and Environmental Sciences, Peking University, Beijing, 100871, China.
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18
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Sun L, Wang J, Song K, Sun Y, Qin Q, Xue Y. Transcriptome analysis of rice (Oryza sativa L.) shoots responsive to cadmium stress. Sci Rep 2019; 9:10177. [PMID: 31308454 PMCID: PMC6629703 DOI: 10.1038/s41598-019-46684-w] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2019] [Accepted: 07/03/2019] [Indexed: 12/18/2022] Open
Abstract
Cadmium (Cd) is highly toxic to living organisms. This study aimed to elucidate the regulation of gene expression in rice shoots under Cd stress. Rice plants were exposed to 0, 50, 75, 100 μmol/L CdCl2 in hydroponic culture for 7 d. Transcriptional changes in rice shoots were examined by transcriptome sequencing techniques. A total of 2197 DEGs (987 up-regulated and 1210 down-regulated) were detected in rice shoots under the exposure of 75 μmol/L CdCl2. GO and KEGG enrichment analyses showed that genes encoding auxin-responsive protein IAA and peroxidase were up-regulated, while genes encoding proteins involved in signal transduction, including TIFY family, ERF and bZIP were down-regulated. Abundant ROS related terms were also identified and grouped into significantly differentially expressed GO terms, including oxidoreductase activity, catalytic activity, oxidation-reduction process, confirming the enhanced oxidative stress of Cd. Genes encoding photosystem I reaction center subunit and photosynthetic NDH subunit of luminal location were up-regulated in pathway of energy metabolism, suggesting an interference of photosynthesis by Cd stress. Our results improve the understanding of the complex molecular responsive mechanisms of rice shoots under Cd stress.
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Affiliation(s)
- Lijuan Sun
- Institute of ECO-Environment and Plant Protection, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China
- Shanghai Scientific Observation and Experimental Station for Agricultural Environment and Land Conservation, Shanghai, 201403, China
- Shanghai Environmental Protection Monitoring Station of Agriculture, Shanghai, 201403, China
- Shanghai Engineering Research Centre of Low-carbon Agriculture (SERLA), Shanghai, 201403, China
- Shanghai Key Laboratory of Protected Horticultural Technology, Shanghai, 201403, China
| | - Jun Wang
- Institute of ECO-Environment and Plant Protection, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China
- College of Resources and Environmental Sciences, Nanjing Agricultural University, No. 1, Weigang, Xuanwu District, Nanjing, 210095, China
| | - Ke Song
- Institute of ECO-Environment and Plant Protection, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China
- Shanghai Scientific Observation and Experimental Station for Agricultural Environment and Land Conservation, Shanghai, 201403, China
- Shanghai Environmental Protection Monitoring Station of Agriculture, Shanghai, 201403, China
- Shanghai Engineering Research Centre of Low-carbon Agriculture (SERLA), Shanghai, 201403, China
- Shanghai Key Laboratory of Protected Horticultural Technology, Shanghai, 201403, China
| | - Yafei Sun
- Institute of ECO-Environment and Plant Protection, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China
- Shanghai Scientific Observation and Experimental Station for Agricultural Environment and Land Conservation, Shanghai, 201403, China
- Shanghai Environmental Protection Monitoring Station of Agriculture, Shanghai, 201403, China
- Shanghai Engineering Research Centre of Low-carbon Agriculture (SERLA), Shanghai, 201403, China
- Shanghai Key Laboratory of Protected Horticultural Technology, Shanghai, 201403, China
| | - Qin Qin
- Institute of ECO-Environment and Plant Protection, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China.
- Shanghai Scientific Observation and Experimental Station for Agricultural Environment and Land Conservation, Shanghai, 201403, China.
- Shanghai Environmental Protection Monitoring Station of Agriculture, Shanghai, 201403, China.
- Shanghai Engineering Research Centre of Low-carbon Agriculture (SERLA), Shanghai, 201403, China.
- Shanghai Key Laboratory of Protected Horticultural Technology, Shanghai, 201403, China.
| | - Yong Xue
- Institute of ECO-Environment and Plant Protection, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China.
- Shanghai Scientific Observation and Experimental Station for Agricultural Environment and Land Conservation, Shanghai, 201403, China.
- Shanghai Environmental Protection Monitoring Station of Agriculture, Shanghai, 201403, China.
- Shanghai Engineering Research Centre of Low-carbon Agriculture (SERLA), Shanghai, 201403, China.
- Shanghai Key Laboratory of Protected Horticultural Technology, Shanghai, 201403, China.
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Wang R, Mei Y, Xu L, Zhu X, Wang Y, Guo J, Liu L. Genome-wide characterization of differentially expressed genes provides insights into regulatory network of heat stress response in radish (Raphanus sativus L.). Funct Integr Genomics 2018; 18:225-239. [DOI: 10.1007/s10142-017-0587-3] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2017] [Revised: 10/14/2017] [Accepted: 12/21/2017] [Indexed: 12/14/2022]
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Transcriptome analysis in leaves of rice (Oryza sativa) under high manganese stress. Biologia (Bratisl) 2017. [DOI: 10.1515/biolog-2017-0048] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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21
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Ji Y, Zhou Y, Ma C, Feng Y, Hao Y, Rui Y, Wu W, Gui X, Le VN, Han Y, Wang Y, Xing B, Liu L, Cao W. Jointed toxicity of TiO 2 NPs and Cd to rice seedlings: NPs alleviated Cd toxicity and Cd promoted NPs uptake. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2017; 110:82-93. [PMID: 27193349 DOI: 10.1016/j.plaphy.2016.05.010] [Citation(s) in RCA: 100] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2016] [Revised: 05/08/2016] [Accepted: 05/09/2016] [Indexed: 05/07/2023]
Abstract
Previous studies have reported that nanoparticles (NPs) and heavy metals are toxic to the environment. However, the jointed toxicity is not yet well understood. This study was aimed to investigate the combined toxicity of TiO2 NPs and the heavy metal cadmium (Cd) to plants. Rice (Oryzasativa L.) was selected as the target plant. The rice seedlings were randomly separated into 12 groups and treated with CdCl2 (0, 10 and 20 mg/L) and TiO2 NPs (0, 10, 100 and 1000 mg/L). The plant height, biomass and root length indicated significant toxicity of Cd to the growth, but TiO2 NPs exhibited the potential ability to alleviate the Cd toxicity. Transmission electron microscopy (TEM) and energy dispersive spectrometer (EDS) confirmed the existence of TiO2 NPs in plants. Elemental analysis of Ti and Cd suggested that the presences of Cd significantly decreased the Ti accumulation in the rice roots in the co-exposure treatments. Interestingly, TiO2 NPs could lower the Cd uptake and distribution in rice roots and leaves. The results of antioxidant enzyme activity, lipid peroxide as well as phytohormones varied in the different treatments. Comparing with the Cd alone treatment, the net photosynthetic rate and chlorophyll content were significantly increased in the co-exposure treatments, suggesting that TiO2 NPs could tremendously reduce the Cd toxicity.
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Affiliation(s)
- Ye Ji
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Yun Zhou
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Chuanxin Ma
- Stockbridge School of Agriculture, University of Massachusetts, Amherst, MA 01003, USA
| | - Yan Feng
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Yi Hao
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Yukui Rui
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China; Stockbridge School of Agriculture, University of Massachusetts, Amherst, MA 01003, USA.
| | - Wenhao Wu
- Stockbridge School of Agriculture, University of Massachusetts, Amherst, MA 01003, USA
| | - Xin Gui
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Van Nhan Le
- Center for Training, Consultancy and Technology Transfer, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Street, Cau Giay District, Ha Noi City, Viet Nam
| | - Yaning Han
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Yingcai Wang
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Baoshan Xing
- Stockbridge School of Agriculture, University of Massachusetts, Amherst, MA 01003, USA
| | - Liming Liu
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Weidong Cao
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, China
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Shahid M, Dumat C, Khalid S, Niazi NK, Antunes PMC. Cadmium Bioavailability, Uptake, Toxicity and Detoxification in Soil-Plant System. REVIEWS OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2017; 241:73-137. [PMID: 27300014 DOI: 10.1007/398_2016_8] [Citation(s) in RCA: 80] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
This review summarizes the findings of the most recent studies, published from 2000 to 2016, which focus on the biogeochemical behavior of Cd in soil-plant systems and its impact on the ecosystem. For animals and people not subjected to a Cd-contaminated environment, consumption of Cd contaminated food (vegetables, cereals, pulses and legumes) is the main source of Cd exposure. As Cd does not have any known biological function, and can further cause serious deleterious effects both in plants and mammalian consumers, cycling of Cd within the soil-plant system is of high global relevance.The main source of Cd in soil is that which originates as emissions from various industrial processes. Within soil, Cd occurs in various chemical forms which differ greatly with respect to their lability and phytoavailability. Cadmium has a high phytoaccumulation index because of its low adsorption coefficient and high soil-plant mobility and thereby may enter the food chain. Plant uptake of Cd is believed to occur mainly via roots by specific and non-specific transporters of essential nutrients, as no Cd-specific transporter has yet been identified. Within plants, Cd causes phytotoxicity by decreasing nutrient uptake, inhibiting photosynthesis, plant growth and respiration, inducing lipid peroxidation and altering the antioxidant system and functioning of membranes. Plants tackle Cd toxicity via different defense strategies such as decreased Cd uptake or sequestration into vacuoles. In addition, various antioxidants combat Cd-induced overproduction of ROS. Other mechanisms involve the induction of phytochelatins, glutathione and salicylic acid.
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Affiliation(s)
- Muhammad Shahid
- Department of Environmental Sciences, COMSATS Institute of Information Technology, Vehari, 61100, Pakistan.
| | - Camille Dumat
- Centre d'Etude et de Recherche Travail Organisation Pouvoir (CERTOP), UMR5044, Université J. Jaurès-Toulouse II, 5 Allée Antonio Machado, 31058, Toulouse Cedex 9, France
| | - Sana Khalid
- Department of Environmental Sciences, COMSATS Institute of Information Technology, Vehari, 61100, Pakistan
| | - Nabeel Khan Niazi
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad, 38040, Pakistan
- Southern Cross GeoScience, Southern Cross University, Lismore, 2480, NSW, Australia
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Rizwan M, Ali S, Adrees M, Rizvi H, Zia-Ur-Rehman M, Hannan F, Qayyum MF, Hafeez F, Ok YS. Cadmium stress in rice: toxic effects, tolerance mechanisms, and management: a critical review. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2016; 23:17859-79. [PMID: 26996904 DOI: 10.1007/s11356-016-6436-4] [Citation(s) in RCA: 351] [Impact Index Per Article: 43.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2016] [Accepted: 03/07/2016] [Indexed: 05/20/2023]
Abstract
Cadmium (Cd) is one of the main pollutants in paddy fields, and its accumulation in rice (Oryza sativa L.) and subsequent transfer to food chain is a global environmental issue. This paper reviews the toxic effects, tolerance mechanisms, and management of Cd in a rice paddy. Cadmium toxicity decreases seed germination, growth, mineral nutrients, photosynthesis, and grain yield. It also causes oxidative stress and genotoxicity in rice. Plant response to Cd toxicity varies with cultivars, growth condition, and duration of Cd exposure. Under Cd stress, stimulation of antioxidant defense system, osmoregulation, ion homeostasis, and over production of signaling molecules are important tolerance mechanisms in rice. Several strategies have been proposed for the management of Cd-contaminated paddy soils. One such approach is the exogenous application of hormones, osmolytes, and signaling molecules. Moreover, Cd uptake and toxicity in rice can be decreased by proper application of essential nutrients such as nitrogen, zinc, iron, and selenium in Cd-contaminated soils. In addition, several inorganic (liming and silicon) and organic (compost and biochar) amendments have been applied in the soils to reduce Cd stress in rice. Selection of low Cd-accumulating rice cultivars, crop rotation, water management, and exogenous application of microbes could be a reasonable approach to alleviate Cd toxicity in rice. To draw a sound conclusion, long-term field trials are still required, including risks and benefit analysis for various management strategies.
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Affiliation(s)
- Muhammad Rizwan
- Department of Environmental Sciences and Engineering, Government College University, Allama Iqbal Road, 38000, Faisalabad, Pakistan.
| | - Shafaqat Ali
- Department of Environmental Sciences and Engineering, Government College University, Allama Iqbal Road, 38000, Faisalabad, Pakistan
| | - Muhammad Adrees
- Department of Environmental Sciences and Engineering, Government College University, Allama Iqbal Road, 38000, Faisalabad, Pakistan
| | - Hina Rizvi
- Department of Environmental Sciences and Engineering, Government College University, Allama Iqbal Road, 38000, Faisalabad, Pakistan
| | - Muhammad Zia-Ur-Rehman
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, 38040, Pakistan
| | - Fakhir Hannan
- Department of Environmental Sciences and Engineering, Government College University, Allama Iqbal Road, 38000, Faisalabad, Pakistan
| | - Muhammad Farooq Qayyum
- Department of Soil Sciences, Faculty of Agricultural Sciences and Technology, Bahauddin Zakariya University, Multan, Pakistan
| | - Farhan Hafeez
- Department of Environmental Sciences, COMSATS Institute of Information Technology, Abbottabad, Pakistan
| | - Yong Sik Ok
- Korea Biochar Research Centre & Department of Biological Environment, Kangwon National University, Chuncheon, 24341, South Korea
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Zhou Q, Guo JJ, He CT, Shen C, Huang YY, Chen JX, Guo JH, Yuan JG, Yang ZY. Comparative Transcriptome Analysis between Low- and High-Cadmium-Accumulating Genotypes of Pakchoi (Brassica chinensis L.) in Response to Cadmium Stress. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2016; 50:6485-94. [PMID: 27228483 DOI: 10.1021/acs.est.5b06326] [Citation(s) in RCA: 142] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
To reduce cadmium (Cd) pollution of food chains, screening and breeding of low-Cd-accumulating cultivars are the focus of much study. Two previously identified genotypes, a low-Cd-accumulating genotype (LAJK) and a high-Cd-accumulating genotype (HAJS) of pakchoi (Brassica chinesis L.), were stressed by Cd (12.5 μM) for 0 h (T0), 3 h (T3) and 24 h (T24). By comparative transcriptome analysis for root tissue, 3005 and 4343 differentially expressed genes (DEGs) were identified in LAJK at T3 (vs T0) and T24 (vs T3), respectively, whereas 8677 and 5081 DEGs were detected in HAJS. Gene expression pattern analysis suggested a delay of Cd responded transcriptional changes in LAJK compared to HAJS. DEG functional enrichments proposed genotype-specific biological processes coped with Cd stress. Cell wall biosynthesis and glutathione (GSH) metabolism were found to involve in Cd resistance in HAJS, whereas DNA repair and abscisic acid (ABA) signal transduction pathways played important roles in LAJK. Furthermore, the genes participating in Cd efflux such as PDR8 were overexpressed in LAJK, whereas those responsible for Cd transport such as YSL1 were more enhanced in HAJS, exhibiting different Cd transport processes between two genotypes. These novel findings should be useful for molecular assisted screening and breeding of low-Cd-accumulating genotypes for pakchoi.
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Affiliation(s)
- Qian Zhou
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
| | - Jing-Jie Guo
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
| | - Chun-Tao He
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
| | - Chuang Shen
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
| | - Ying-Ying Huang
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
| | - Jing-Xin Chen
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
| | - Jian-Hua Guo
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
| | - Jian-Gang Yuan
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
| | - Zhong-Yi Yang
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
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Genome-Wide Transcriptome Analysis of Cadmium Stress in Rice. BIOMED RESEARCH INTERNATIONAL 2016; 2016:9739505. [PMID: 27034955 PMCID: PMC4789393 DOI: 10.1155/2016/9739505] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/26/2015] [Revised: 01/26/2016] [Accepted: 01/28/2016] [Indexed: 11/24/2022]
Abstract
Rice growth is severely affected by toxic concentrations of the nonessential heavy metal cadmium (Cd). To elucidate the molecular basis of the response to Cd stress, we performed mRNA sequencing of rice following our previous study on exposure to high concentrations of Cd (Oono et al., 2014). In this study, rice plants were hydroponically treated with low concentrations of Cd and approximately 211 million sequence reads were mapped onto the IRGSP-1.0 reference rice genome sequence. Many genes, including some identified under high Cd concentration exposure in our previous study, were found to be responsive to low Cd exposure, with an average of about 11,000 transcripts from each condition. However, genes expressed constitutively across the developmental course responded only slightly to low Cd concentrations, in contrast to their clear response to high Cd concentration, which causes fatal damage to rice seedlings according to phenotypic changes. The expression of metal ion transporter genes tended to correlate with Cd concentration, suggesting the potential of the RNA-Seq strategy to reveal novel Cd-responsive transporters by analyzing gene expression under different Cd concentrations. This study could help to develop novel strategies for improving tolerance to Cd exposure in rice and other cereal crops.
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26
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Identification of early-response genes involved in cadmium resistance in shiitake mushrooms (Lentinula edodes). Mycol Prog 2015. [DOI: 10.1007/s11557-015-1136-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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27
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Fluorescence-based bioassays for the detection and evaluation of food materials. SENSORS 2015; 15:25831-67. [PMID: 26473869 PMCID: PMC4634490 DOI: 10.3390/s151025831] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 07/24/2015] [Revised: 09/28/2015] [Accepted: 09/30/2015] [Indexed: 12/12/2022]
Abstract
We summarize here the recent progress in fluorescence-based bioassays for the detection and evaluation of food materials by focusing on fluorescent dyes used in bioassays and applications of these assays for food safety, quality and efficacy. Fluorescent dyes have been used in various bioassays, such as biosensing, cell assay, energy transfer-based assay, probing, protein/immunological assay and microarray/biochip assay. Among the arrays used in microarray/biochip assay, fluorescence-based microarrays/biochips, such as antibody/protein microarrays, bead/suspension arrays, capillary/sensor arrays, DNA microarrays/polymerase chain reaction (PCR)-based arrays, glycan/lectin arrays, immunoassay/enzyme-linked immunosorbent assay (ELISA)-based arrays, microfluidic chips and tissue arrays, have been developed and used for the assessment of allergy/poisoning/toxicity, contamination and efficacy/mechanism, and quality control/safety. DNA microarray assays have been used widely for food safety and quality as well as searches for active components. DNA microarray-based gene expression profiling may be useful for such purposes due to its advantages in the evaluation of pathway-based intracellular signaling in response to food materials.
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Liu T, Zhu S, Tang Q, Tang S. Genome-wide transcriptomic profiling of ramie (Boehmeria nivea L. Gaud) in response to cadmium stress. Gene 2014; 558:131-7. [PMID: 25550046 DOI: 10.1016/j.gene.2014.12.057] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2014] [Revised: 12/19/2014] [Accepted: 12/24/2014] [Indexed: 12/15/2022]
Abstract
Cadmium (Cd) contamination in agricultural soils has become a major environmental problem in China. Ramie, a fiber crop, has frequently been proposed for use as a phytoremediation crop for the restoration of Cd-contaminated farmlands. However, high levels of Cd can greatly inhibit stem growth in ramie, which reduces its economic value as a crop. To understand the potential mechanisms behind this phenomenon, the ramie genes involved in the Cd stress response were identified using Illumina pair-end sequencing on two Cd-stressed plants (CdS1 and CdS2) and two control plants (CO1 and CO2). Approximately 48.7, 51.6, 41.2, and 47.1 million clean sequence reads were generated from the libraries of CO1, CO2, CdS1, and CdS2, respectively, and de novo assembled to yield 56,932 non-redundant unigenes. A total of 26,686 (46.9%) genes were annotated for their function. Comparison of gene expression levels in CO and CdS ramie revealed 155 differentially expressed genes (DEGs) between treatment and control conditions. Sixteen DEGs were further analyzed for expression differences by using real-time quantitative PCR (qRT-PCR). Among these 16 DEGs, 2 genes encoding GA2-oxidase (a major enzyme for deactivating bioactive gibberellins [GAs]) showed markedly up-regulated expression in Cd stressed ramie. This might be responsible for the growth inhibition of Cd-stressed ramie. Pathway enrichment analysis revealed that the cutin, suberine and wax biosynthesis pathway was markedly enriched by DEGs. The discovery of these Cd stress-responsive genes and pathways will be helpful in further understanding the mechanism of Cd-stress response and improving Cd stress tolerance in ramie.
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Affiliation(s)
- Touming Liu
- Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.
| | - Siyuan Zhu
- Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.
| | - Qingming Tang
- Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.
| | - Shouwei Tang
- Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.
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Oono Y, Yazawa T, Kawahara Y, Kanamori H, Kobayashi F, Sasaki H, Mori S, Wu J, Handa H, Itoh T, Matsumoto T. Genome-wide transcriptome analysis reveals that cadmium stress signaling controls the expression of genes in drought stress signal pathways in rice. PLoS One 2014; 9:e96946. [PMID: 24816929 PMCID: PMC4016200 DOI: 10.1371/journal.pone.0096946] [Citation(s) in RCA: 86] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2014] [Accepted: 03/09/2014] [Indexed: 11/26/2022] Open
Abstract
Plant growth is severely affected by toxic concentrations of the non-essential heavy metal cadmium (Cd). Comprehensive transcriptome analysis by RNA-Seq following cadmium exposure is required to further understand plant responses to Cd and facilitate future systems-based analyses of the underlying regulatory networks. In this study, rice plants were hydroponically treated with 50 µM Cd for 24 hours and ∼60,000 expressed transcripts, including transcripts that could not be characterized by microarray-based approaches, were evaluated. Upregulation of various ROS-scavenging enzymes, chelators and metal transporters demonstrated the appropriate expression profiles to Cd exposure. Gene Ontology enrichment analysis of the responsive transcripts indicated the upregulation of many drought stress-related genes under Cd exposure. Further investigation into the expression of drought stress marker genes such as DREB suggested that expression of genes in several drought stress signal pathways was activated under Cd exposure. Furthermore, qRT-PCR analyses of randomly selected Cd-responsive metal transporter transcripts under various metal ion stresses suggested that the expression of Cd-responsive transcripts might be easily affected by other ions. Our transcriptome analysis demonstrated a new transcriptional network linking Cd and drought stresses in rice. Considering our data and that Cd is a non-essential metal, the network underlying Cd stress responses and tolerance, which plants have developed to adapt to other stresses, could help to acclimate to Cd exposure. Our examination of this transcriptional network provides useful information for further studies of the molecular mechanisms of plant adaptation to Cd exposure and the improvement of tolerance in crop species.
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Affiliation(s)
- Youko Oono
- Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
- * E-mail:
| | - Takayuki Yazawa
- Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
- New Project Development Division, Hitachi Government & Public Corporation System Engineering, Ltd, Koto-ku, Tokyo, Japan
| | - Yoshihiro Kawahara
- Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
| | - Hiroyuki Kanamori
- Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
| | - Fuminori Kobayashi
- Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
| | - Harumi Sasaki
- Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
| | - Satomi Mori
- Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
| | - Jianzhong Wu
- Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
| | - Hirokazu Handa
- Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
| | - Takeshi Itoh
- Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
| | - Takashi Matsumoto
- Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
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Wang L, Li H, Wei H, Wu X, Ke L. Identification of cadmium-induced Agaricus blazei genes through suppression subtractive hybridization. Food Chem Toxicol 2013; 63:84-90. [PMID: 24184195 DOI: 10.1016/j.fct.2013.10.036] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2013] [Revised: 10/02/2013] [Accepted: 10/22/2013] [Indexed: 11/28/2022]
Abstract
Cadmium (Cd) is one of the most serious environmental pollutants. Filamentous fungi are very promising organisms for controlling and reducing the amount of heavy metals released by human and industrial activities. However, the molecular mechanisms involved in Cd accumulation and tolerance of filamentous fungi are not fully understood. Agaricus blazei Murrill, an edible mushroom with medicinal properties, demonstrates high tolerance for heavy metals, especially Cd. To investigate the molecular mechanisms underlying the response of A. blazei after Cd exposure, we constructed a forward subtractive library that represents cadmium-induced genes in A. blazei under 4 ppm Cd stress for 14 days using suppression subtractive hybridization combined with mirror orientation selection. Differential screening allowed us to identify 39 upregulated genes, 26 of which are involved in metabolism, protein fate, cellular transport, transport facilitation and transport routes, cell rescue, defense and virulence, transcription, and the action of proteins with a binding function, and 13 are encoding hypothetical proteins with unknown functions. Induction of six A. blazei genes after Cd exposure was further confirmed by RT-qPCR. The cDNAs isolated in this study contribute to our understanding of genes involved in the biochemical pathways that participate in the response of filamentous fungi to Cd exposure.
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Affiliation(s)
- Liling Wang
- Zhejiang Forestry Academy, Zhejiang Provincial Key Laboratory of Forest Food, Hangzhou 310023, China
| | - Haibo Li
- Zhejiang Forestry Academy, Zhejiang Provincial Key Laboratory of Forest Food, Hangzhou 310023, China.
| | - Hailong Wei
- Zhejiang Forestry Academy, Zhejiang Provincial Key Laboratory of Forest Food, Hangzhou 310023, China
| | - Xueqian Wu
- Zhejiang Forestry Academy, Zhejiang Provincial Key Laboratory of Forest Food, Hangzhou 310023, China; Zhejiang Academy of Medical Science, Hangzhou 310013, China
| | - Leqin Ke
- Lishui University, Lishui 323000, China
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Regier N, Baerlocher L, Münsterkötter M, Farinelli L, Cosio C. Analysis of the Elodea nuttallii transcriptome in response to mercury and cadmium pollution: development of sensitive tools for rapid ecotoxicological testing. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2013; 47:8825-8834. [PMID: 23802634 DOI: 10.1021/es401082h] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Toxic metals polluting aquatic ecosystems are taken up by inhabitants and accumulate in the food web, affecting species at all trophic levels. It is therefore important to have good tools to assess the level of risk represented by toxic metals in the environment. Macrophytes are potential organisms for the identification of metal-responsive biomarkers but are still underrepresented in ecotoxicology. In the present study, we used next-generation sequencing to investigate the transcriptomic response of Elodea nuttallii exposed to enhanced concentrations of Hg and Cd. We de novo assembled more than 60 000 contigs, of which we found 170 to be regulated dose-dependently by Hg and 212 by Cd. Functional analysis showed that these genes were notably related to energy and metal homeostasis. Expression analysis using nCounter of a subset of genes showed that the gene expression pattern was able to assess toxic metal exposure in complex environmental samples and was more sensitive than other end points (e.g., bioaccumulation, photosynthesis, etc.). In conclusion, we demonstrate the feasibility of using gene expression signatures for the assessment of environmental contamination, using an organism without previous genetic information. This is of interest to ecotoxicology in a wider sense given the possibility to develop specific and sensitive bioassays.
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Affiliation(s)
- Nicole Regier
- Institut F.-A. Forel, University of Geneva , 10 route de Suisse, CP416, 1290 Versoix, Switzerland
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Shah K, Nahakpam S. Heat exposure alters the expression of SOD, POD, APX and CAT isozymes and mitigates low cadmium toxicity in seedlings of sensitive and tolerant rice cultivars. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2012; 57:106-13. [PMID: 22698753 DOI: 10.1016/j.plaphy.2012.05.007] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2012] [Accepted: 05/07/2012] [Indexed: 05/11/2023]
Abstract
A 0-500 μM Cd(2+) alone and/or heat stress in rice cv. DR-92 (sensitive) and cv. Bh-1 (tolerant), altered the banding patterns of SOD, CAT, POD and APX enzymes in roots/shoots. In controls, six/seven activity bands for POD in roots/shoots were observed. The band intensities of some decreased under combination of Cd(2+) + heat stress. Six SOD isoforms in shoots of cv. Bh-1 and three in cv. DR-92 appeared. In sensitive cv. DR-92 a trinuclear Cu/Zn/Mn-SOD 1 isozyme was upregulated in shoots under Cd/HS/Cd + HS treatments whereas a suppression in the same was noticed in roots. Under Cd alone the Cu/Zn/Mn-SOD 2 was strongly induced in roots which was otherwise absent in all HS treatments. POD R7 band was absent in HS alone but was induced under Cd(2+) + HS treatments in rice cv. DR-92. In tolerant cv. Bh-1, isozyme Mn-SOD 3 was induced under Cd alone but was absent under HS. Cu/Zn/Mn-SOD 2 and Cu/Zn/Mn-SOD 3 were strongly induced in roots and shoots under low or moderate Cd(2+) + HS treatments. APX R4/CATR2 isozymes which were absent under Cd(2+) alone or HS alone were induced under combination of Cd(2+) + HS indicating de novo synthesis of enzyme proteins under combined stressors. Decreased band intensities under Cd(2+) + HS suggest a cross-talk between response pathways of Cd(2+) and heat stress in rice. Results suggest Cd(2+) specific, heat-specific, tissue specific and differential expression of SOD/POD/APX/CAT and that Mn-SOD 3/APXR4/CATR2 seem to form important components of antioxidant defense in rice roots under combination of Cd(2+) + HS which helps to mitigate the effect of low Cd(2+) toxicity in tolerant rice cv. Bh-1.
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Affiliation(s)
- Kavita Shah
- Institute of Environment and Sustainable Development, Banaras Hindu University, Varanasi 221005, India.
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