Deciphering the ecophysiological traits involved during water stress acclimation and recovery of the threatened wild carnation, Dianthus inoxianus

Long-term methylome changes after experimental seed demethylation and their interaction with recurrent water stress in Erodium cicutarium (Geraniaceae)

The frequencies and lengths of drought periods are increasing in subtropical and temperate regions worldwide. Epigenetic responses to water stress could be key for plant resilience to these largely unpredictable challenges. Experimental DNA demethylation, together with application of a stress factor is an appropriate strategy to reveal the contribution of epigenetics to plant responses to stress. We analysed leaf cytosine methylation changes in adult plants of the annual Mediterranean herb, Erodium cicutarium, in a greenhouse, after seed demethylation with 5-Azacytidine and/or recurrent water stress. We used bisulfite RADseq (BsRADseq) and a newly reported reference genome for E. cicutarium to characterize methylation changes in a 2 × 2 factorial design, controlling for plant relatedness. In the long term, 5-Azacytidine treatment alone caused both hypo- and hyper-methylation at individual cytosines, with substantial hypomethylation in CG contexts. In control conditions, drought resulted in a decrease in methylation in all but CHH contexts. In contrast, the genome of plants that experienced recurrent water stress and had been treated with 5-Azacytidine increased DNA methylation level by ca. 5%. Seed demethylation and recurrent drought produced a highly significant interaction in terms of global and context-specific cytosine methylation. Most methylation changes occurred around genic regions and within Transposable Elements. The annotation of these Differentially Methylated Regions associated with genes included several with a potential role in stress responses (e.g., PAL, CDKC, and ABCF), confirming an epigenetic contribution in response to stress at the molecular level.

Physiology, gene expression, and epiphenotype of two Dianthus broteri polyploid cytotypes under temperature stress

Increasing evidence supports a major role for abiotic stress response in the success of plant polyploids, which usually thrive in harsh environments. However, understanding the ecophysiology of polyploids is challenging due to interactions between genome doubling and natural selection. Here, we investigated physiological responses, gene expression, and the epiphenotype of two related Dianthus broteri cytotypes-with different genome duplications (4× and 12×) and evolutionary trajectories-to short extreme temperature events (42/28 °C and 9/5 °C). The 12× cytotype showed higher expression of stress-responsive genes (SWEET1, PP2C16, AI5L3, and ATHB7) and enhanced gas exchange compared with 4×. Under heat stress, both ploidies had greatly impaired physiological performance and altered gene expression, with reduced cytosine methylation. However, the 12× cytotype exhibited remarkable physiological tolerance (maintaining gas exchange and water status via greater photochemical integrity and probably enhanced water storage) while down-regulating PP2C16 expression. Conversely, 4× D. broteri was susceptible to thermal stress despite prioritizing water conservation, showing signs of non-stomatal photosynthetic limitations and irreversible photochemical damage. This cytotype also presented gene-specific expression patterns under heat, up-regulating ATHB7. These findings provide insights into divergent stress response strategies and physiological resistance resulting from polyploidy, highlighting its widespread influence on plant function.

Nitraria sibirica adapts to long-term soil water deficit by reducing photosynthesis, stimulating antioxidant systems, and accumulating osmoregulators

Amid climate change and shifts in precipitation patterns, drought conditions are expanding worldwide. Drought stress severely threatens plant growth in arid and semi-arid regions, wherein shrubs play a crucial role in maintaining ecological stability. Despite its ecological significance, studies are lacking on how Nitraria sibirica adapts to long-term drought stress. Therefore, in this study, to elucidate the mechanism of drought stress adaptation in N. sibirica, we analysed morphological, physiological, and transcriptional characteristics of plants in two soil habitats: riparian (moist) and desert (arid). The results showed that in desert soils, as soil water content decreased, leaf thickness increased, while plant height and leaf area decreased. Physiologically, photosynthesis decreased; soluble sugar, starch, proline, and hydrogen peroxide content increased significantly; while soluble proteins decreased significantly. Additionally, membrane lipid peroxidation products and antioxidant enzyme activities significantly increased under drought stress. Then, Kyoto Encyclopaedia of Genes and Genomes (KEGG) enrichment analysis identified 313 key genes, which were considered the most significantly enriched in the photosynthesis and photosynthetic antenna protein pathways. Further, we found that the proteins encoding photosystem II (PsbP, PsbQ, PsbR, PsbY, and Psb27), photosystem I (PsaD, PsaF, PsaG, PsaH, PsaK, and PsaO), photosynthetic electron transport (PetF), and light-trapping antenna proteins were significantly downregulated under drought stress. Taken together, these results suggest that N. sibirica adapts to long-term drought conditions by suppressing photosynthesis, activating antioxidant systems, and recruiting osmoregulators. This study provides a basis for elucidating the growth mechanisms of N. sibirica under long-term drought stress conditions.

Ecophysiology of Endangered Plant Species Saussurea esthonica: Effect of Mineral Nutrient Availability and Soil Moisture

Saussurea esthonica is an endangered plant species typical for wet inland habitats such as calcareous fens. Due to its limited population size and distribution, non-invasive sampling of is important in the research of S. esthonica. The aim of the present study was to assess the effect of mineral nutrient availability and substrate moisture on the growth, physiological status, and mineral nutrition of S. esthonica. The non-destructive measurement of physiological parameters was performed in native habitats during three vegetative seasons, followed by two experiments in controlled conditions. Soil at the two Estonian sites had a relatively larger similarity in the composition of plant-available mineral nutrients in comparison to the two Latvian sites. The chlorophyll a fluorescence parameter Performance Index correlated with the total precipitation in the respective month before measurement, but no significant relationship with other environmental variables was found. For mineral nutrient experiments, plants were grown in four substrates with different mineral nutrient composition, resembling that of soil at different S. esthonica sites. Plant growth and physiological indices were significantly affected by the mineral composition of the substrate. Differences in leaf and root mineral nutrient concentrations of S. esthonica plants in part reflected differences in substrate mineral concentration. To evaluate the effect of soil moisture on growth and photosynthesis-associated parameters of S. esthonica, plants were cultivated in "Pope+" substrate at four different moisture treatments (dry, normal, wet, and waterlodged). The most intense growth of S. esthonica plants was evident in waterlodged conditions, which decreased with a decrease in soil moisture. The biomass of leaves increased by 106% and that of the roots increased by 72% as soil moisture increased from dry to normal. For waterlodged plants, leaf biomass increased by 263% and root biomass increased by 566%, in comparison to that for plants cultivated in dry substrate. Substrate drying had a more negative effect on the growth of S. esthonica plants in comparison to that of waterlodging, and this can be directly linked to prevalent hydrological conditions of an alkaline fen habitat native to the species. Therefore, the preservation of the natural water regime in natural habitats is critical to the conservation of the species.

Different adaptive patterns of wheat with different drought tolerance under drought stresses and rehydration revealed by integrated metabolomic and transcriptomic analysis

Wheat as a staple food crop is enduring ever-frequent intermittent and changing drought with the climate change. It is of great significance to highlight the adaptive approaches under such variable conditions at multiple levels to provide a comprehensive understanding of drought tolerance and facilitate the genetic breeding of wheat. Therefore, three wheat lines with different drought tolerance (drought-tolerant mutant Mu > common wheat CK > drought susceptible mutant mu) were analyzed under moderate and severe drought stresses as well as rehydration. Samples were subjected to transcriptomic and metabolomic profiling in combination with physiological and biochemical determination. The moderate drought stress rendered 198 and 115 differentially expressed metabolites (DEMs) in CK and Mu, respectively. The severe drought stress rendered 166, 151 and 137 DEMs in CK, Mu and mu, respectively. The rehydration rendered 150 and 127 DEMs in CK and Mu. 12,557 and 10,402 differentially expressed genes (DEGs) were identified for CK and Mu under moderate drought stress, respectively. 9,893, 7,924, and 9,387 DEGs were identified for CK, Mu, and mu under severe drought stress, respectively. 13,874 and 14,839 were identified in CK and Mu under rehydration, respectively. Metabolomics results showed that amino acid was the most differentially expressed metabolites, followed by phenolic acids. Flavonoids played an important role in drought tolerance. Most enriched pathways under drought included biosynthesis of secondary metabolites, metabolic pathways and photosynthesis. Metabolites and genes involved in osmotic regulation, antioxidase activities, and ABA signaling were more enriched in Mu than in CK and mu. Various drought-responsive genes and metabolites in Mu showed different trends with those in CK and mu. Increased amino acids biosynthetic capability and ROS scavenging ability resulted from higher antioxidase activities and increased flavonoids may be the mechanisms underlying the drought tolerance characteristic of Mu. Recovery from reversible ROS damage and rapid amino acid biosynthesis may contribute to the rapid recovery of Mu. The present study provides new insights for mechanisms of wheat under complex drought conditions.

A Review on Potential Plant-Based Water Stress Indicators for Vegetable Crops

Area under vegetable cultivation is expanding in arid and semi-arid regions of the world to meet the nutritional requirements of an ever-growing population. However, water scarcity in these areas is limiting vegetable productivity. New water-conserving irrigation management practices are being implemented in these areas. Under these irrigation management practices, crops are frequently exposed to some extent of water stress. Vegetables are highly sensitive to water stress. For the successful implementation of new irrigation practices in vegetable crops, it is of immense importance to determine the threshold water deficit level which will not have a detrimental effect on plant growth and yield. Along with this, plant response and adaptation mechanisms to new irrigation practices need to be understood for the successful implementation of new irrigation practices. To understand this, water stress indicators that are highly responsive to water stress; and that can help in early detection of water stress need to be identified for vegetable crops. Plant-based water stress indicators are quite effective in determining the water stress level in plants because they take into account the cumulative effect of water stress due to declining soil moisture status and increased evaporative demand of the atmosphere while determining the water stress level in plant. Water stress quantification using plant-based approaches involves direct measurements of several aspects of plant water status and indirect measurements of plant processes which are highly sensitive to water deficit. In this article, a number of plant-based water stress indicators were critically reviewed for (1) their efficacy to determine the level of water stress, (2) their potential to predict the yield of a crop as affected by different water-deficit levels and (3) their suitability for irrigation scheduling in vegetable crops.

Niche divergence and limits to expansion in the high polyploid Dianthus broteri complex

Niche evolution in plant polyploids remains controversial and evidence for alternative patterns has been reported. Using the autopolyploid Dianthus broteri complex (2×, 4×, 6× and 12×) as a model, we aimed to integrate three scenarios - competitive exclusion, recurrent origins of cytotypes and niche filling - into a single framework of polyploid niche evolution. We hypothesized that high polyploids would tend to evolve towards extreme niches when low ploidy cytotypes have nearly filled the niche space. We used several ecoinformatics and phylogenetic comparative analyses to quantify differences in the ecological niche of each cytotype and to evaluate alternative models of niche evolution. Each cytotype in this complex occupied a distinct ecological niche. The distributions were mainly constrained by soil characteristics, temperature and drought stress imposed by the Mediterranean climate. Tetraploids had the highest niche breadth and overlap due to their multiple origins, whereas the higher ploidy cytotypes were found in different, restricted, nonoverlapping niches. Niche evolution analyses suggested a scenario with one niche optimum for each ploidy, including the two independent tetraploid lineages. Our results suggest that the fate of nascent polyploids could not be predicted without accounting for phylogenetic relatedness, recurrent origins or the niche occupied by ancestors.

Identification of Salt and Drought Biochemical Stress Markers in Several Silene vulgaris Populations

This study attempted to determine short-term responses to drought and salt stress in different Silene vulgaris genotypes and to identify potential abiotic stress biochemical indicators in this species. Four populations from contrasting habitats were subjected to drought and three levels of salinity under controlled greenhouse conditions. The determination of several growth parameters after the stress treatments allowed for ranking the tolerance to stress of the four analyzed populations on the basis of their relative degree of stress-induced growth inhibition. This was then correlated with changes in the leaf levels of monovalent ions (Na+, Cl−, and K+), photosynthetic pigments (chlorophylls a and b, carotenoids), osmolytes (total soluble sugars, proline), and non-enzymatic antioxidants (total phenolic compounds and flavonoids). Despite the observed differences, all four populations appeared to be relatively tolerant to both stress conditions, which in general did not cause a significant degradation of photosynthetic pigments and did not generate oxidative stress in the plants. Drought and salinity tolerance in S. vulgaris was mostly dependent on the use of Na+ and K+ for osmotic adjustment under stress, a mechanism that appeared to be constitutive, and not stress-induced, since relatively high concentrations of these cations (without reaching toxic levels) were also present in the leaves of control plants. The inhibition of additional transportation of toxic ions to the leaves, in response to increasing external salinity, seemed to be a relevant mechanism of tolerance, specifically to salt stress, whereas accumulation of soluble sugars under drought conditions may have contributed to tolerance to drought.

Methodology of Drought Stress Research: Experimental Setup and Physiological Characterization

Drought is one of the major stress factors affecting the growth and development of plants. In this context, drought-related losses of crop plant productivity impede sustainable agriculture all over the world. In general, plants respond to water deficits by multiple physiological and metabolic adaptations at the molecular, cellular, and organism levels. To understand the underlying mechanisms of drought tolerance, adequate stress models and arrays of reliable stress markers are required. Therefore, in this review we comprehensively address currently available models of drought stress, based on culturing plants in soil, hydroponically, or in agar culture, and critically discuss advantages and limitations of each design. We also address the methodology of drought stress characterization and discuss it in the context of real experimental approaches. Further, we highlight the trends of methodological developments in drought stress research, i.e., complementing conventional tests with quantification of phytohormones and reactive oxygen species (ROS), measuring antioxidant enzyme activities, and comprehensively profiling transcriptome, proteome, and metabolome.

Sensitive indicators of Stipa bungeana response to precipitation under ambient and elevated CO2 concentration

Precipitation is a primary environmental factor in the semiarid grasslands of northern China. With increased concentrations of atmospheric greenhouse gases, precipitation regimes will change, and high-impact weather events may be more common. Currently, many ecophysiological indicators are known to reflect drought conditions, but these indicators vary greatly among species, and few studies focus on the applicability of these drought indicators under high CO₂ conditions. In this study, five precipitation levels (- 30%, - 15%, control, + 15%, and + 30%) were used to simulate the effects of precipitation change on 18 ecophysiological characteristics in Stipa bungeana, including leaf area, plant height, leaf nitrogen (N), and chlorophyll content, among others. Two levels of CO₂ concentration (ambient, 390 ppm; 550 ppm) were used to simulate the effects of elevated CO₂ on these drought indicators. Using gray relational analysis and phenotypic plasticity analysis, we found that total leaf area or leaf number (morphology), leaf water potential or leaf water content (physiology), and aboveground biomass better reflected the water status of S. bungeana under ambient and elevated CO₂ than the 13 other analyzed variables. The sensitivity of drought indicators changed under the elevated CO₂ condition. By quantifying the relationship between precipitation and the five most sensitive indicators, we found that the thresholds of precipitation decreased under elevated CO₂ concentration. These results will be useful for objective monitoring and assessment of the occurrence and development of drought events in S. bungeana grasslands.

Highlighting the differential role of leaf paraheliotropism in two Mediterranean Cistus species under drought stress and well-watered conditions

The differential degree by which paraheliotropism may counterbalance the deleterious impact of high irradiance between congeneric species in relation to different water availabilities has been poorly investigated. We followed the evolution of gas exchange, quenching analysis and OJIP parameters in restrained (R) and free (F) to move leaves of Cistus monspeliensis (CM) and Cistus salvifolius (CS) under drought stress (WS) and well-watered conditions (WW). Concerning gas exchange parameters, leaf restriction effect was overall not significant in CM except in apparent carboxylation efficiency (C_e) under WS, while CS showed a significant sensitivity of maximum net photosynthetic rate (A_max), stomatal conductance (gs) and C_e even under WW. The recovery analysis highlighted also a faster gs recovery in F leaves. Furthermore, in both the species, restriction affected photon allocation pathways especially in terms of light-regulated and light-independent constitutive non-photochemical energy dissipation under WW, ultimately affecting electron transport rate (ETR). Nevertheless, the OJIP analysis provided us evidences that CM was characterized by a down-regulation of ETR while an impairment occurs in CS. In CM this was due to its ability to modify a certain fraction of reaction centers thus resulting in a higher capability for dissipation of excess light energy under well-watered conditions, not affecting electron transport efficiency. This response was not observed in CS. Overall, we demonstrated that congeneric species, even mostly sharing the same physiological targets, differ in the degree by which leaf movements help to counterbalance the negative effect of the high irradiance in relation with the amount of water available.