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La Scala S, Naselli F, Quatrini P, Gallo G, Caradonna F. Drought-Adapted Mediterranean Diet Plants: A Source of Bioactive Molecules Able to Give Nutrigenomic Effects per sè or to Obtain Functional Foods. Int J Mol Sci 2024; 25:2235. [PMID: 38396910 PMCID: PMC10888686 DOI: 10.3390/ijms25042235] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 02/09/2024] [Accepted: 02/10/2024] [Indexed: 02/25/2024] Open
Abstract
The Mediterranean diet features plant-based foods renowned for their health benefits derived from bioactive compounds. This review aims to provide an overview of the bioactive molecules present in some representative Mediterranean diet plants, examining their human nutrigenomic effects and health benefits as well as the environmental advantages and sustainability derived from their cultivation. Additionally, it explores the facilitation of producing fortified foods aided by soil and plant microbiota properties. Well-studied examples, such as extra virgin olive oil and citrus fruits, have demonstrated significant health advantages, including anti-cancer, anti-inflammatory, and neuroprotective effects. Other less renowned plants are presented in the scientific literature with their beneficial traits on human health highlighted. Prickly pear's indicaxanthin exhibits antioxidant properties and potential anticancer traits, while capers kaempferol and quercetin support cardiovascular health and prevent cancer. Oregano and thyme, containing terpenoids like carvacrol and γ-terpinene, exhibit antimicrobial effects. Besides their nutrigenomic effects, these plants thrive in arid environments, offering benefits associated with their cultivation. Their microbiota, particularly Plant Growth Promoting (PGP) microorganisms, enhance plant growth and stress tolerance, offering biotechnological opportunities for sustainable agriculture. In conclusion, leveraging plant microbiota could revolutionize agricultural practices and increase sustainability as climate change threatens biodiversity. These edible plant species may have crucial importance, not only as healthy products but also for increasing the sustainability of agricultural systems.
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Affiliation(s)
- Silvia La Scala
- Dipartimento di Scienze e Tecnologie Biologiche Chimiche e Farmaceutiche, Sezione di Biologia Cellulare, Università di Palermo, 90128, Palermo, Italy; (S.L.S.); (P.Q.); (G.G.); (F.C.)
| | - Flores Naselli
- Dipartimento di Scienze e Tecnologie Biologiche Chimiche e Farmaceutiche, Sezione di Biologia Cellulare, Università di Palermo, 90128, Palermo, Italy; (S.L.S.); (P.Q.); (G.G.); (F.C.)
| | - Paola Quatrini
- Dipartimento di Scienze e Tecnologie Biologiche Chimiche e Farmaceutiche, Sezione di Biologia Cellulare, Università di Palermo, 90128, Palermo, Italy; (S.L.S.); (P.Q.); (G.G.); (F.C.)
| | - Giuseppe Gallo
- Dipartimento di Scienze e Tecnologie Biologiche Chimiche e Farmaceutiche, Sezione di Biologia Cellulare, Università di Palermo, 90128, Palermo, Italy; (S.L.S.); (P.Q.); (G.G.); (F.C.)
- NBFC—National Biodiversity Future Center, 90133 Palermo, Italy
| | - Fabio Caradonna
- Dipartimento di Scienze e Tecnologie Biologiche Chimiche e Farmaceutiche, Sezione di Biologia Cellulare, Università di Palermo, 90128, Palermo, Italy; (S.L.S.); (P.Q.); (G.G.); (F.C.)
- NBFC—National Biodiversity Future Center, 90133 Palermo, Italy
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Genomic, Molecular, and Phenotypic Characterization of Arthrobacter sp. OVS8, an Endophytic Bacterium Isolated from and Contributing to the Bioactive Compound Content of the Essential Oil of the Medicinal Plant Origanum vulgare L. Int J Mol Sci 2023; 24:ijms24054845. [PMID: 36902273 PMCID: PMC10002853 DOI: 10.3390/ijms24054845] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Revised: 02/24/2023] [Accepted: 02/25/2023] [Indexed: 03/06/2023] Open
Abstract
Medicinal plants play an important role in the discovery of new bioactive compounds with antimicrobial activity, thanks to their pharmacological properties. However, members of their microbiota can also synthesize bioactive molecules. Among these, strains belonging to the genera Arthrobacter are commonly found associated with the plant's microenvironments, showing plant growth-promoting (PGP) activity and bioremediation properties. However, their role as antimicrobial secondary metabolite producers has not been fully explored. The aim of this work was to characterize the Arthrobacter sp. OVS8 endophytic strain, isolated from the medicinal plant Origanum vulgare L., from molecular and phenotypic viewpoints to evaluate its adaptation and influence on the plant internal microenvironments and its potential as a producer of antibacterial volatile molecules (VOCs). Results obtained from the phenotypic and genomic characterization highlight its ability to produce volatile antimicrobials effective against multidrug-resistant (MDR) human pathogens and its putative PGP role as a producer of siderophores and degrader of organic and inorganic pollutants. The outcomes presented in this work identify Arthrobacter sp. OVS8 as an excellent starting point toward the exploitation of bacterial endophytes as antibiotics sources.
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Endophytes: Improving Plant Performance. Microorganisms 2022; 10:microorganisms10091777. [PMID: 36144379 PMCID: PMC9501292 DOI: 10.3390/microorganisms10091777] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Revised: 08/31/2022] [Accepted: 09/01/2022] [Indexed: 11/17/2022] Open
Abstract
Endophytes represent microorganisms that reside within plant tissues, without typically causing adverse effects to the plants, for a substantial part of their life cycle, and are primarily known for their beneficial role to their host plant [...].
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ELKIRAN Ö. Chemical Composition of the Essential Oil of Thymus longicaulis C. Presl. subsp. longicaulis. INTERNATIONAL JOURNAL OF SECONDARY METABOLITE 2022. [DOI: 10.21448/ijsm.1086904] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
Abstract
In this study, the chemical composition of the essential oils obtained from the aerial parts of Thymus longicaulis subsp. longicaulis naturally grown in Turkey were analyzed by GC and GC-MS and chemical differences in terms of chemotaxonomy were discussed. The main compounds in the essential oils of T. longicaulis subsp. longicaulis essential oils were 1,8-cineole (30.1%), linalool (18.0%), β-pinene (17.3%) and (E)-β-ocimene (%12.6%) Hierarchical cluster analysis was performed by examining essential oil studies of 34 samples belonging to the genus Thymus, including the Sinop sample. The results of the study were discussed with other taxa belonging to the genus.
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Effect of Site and Phenological Status on the Potato Bacterial Rhizomicrobiota. Microorganisms 2022; 10:microorganisms10091743. [PMID: 36144345 PMCID: PMC9501399 DOI: 10.3390/microorganisms10091743] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Revised: 08/22/2022] [Accepted: 08/26/2022] [Indexed: 11/17/2022] Open
Abstract
The potato is the fourth major food crop in the world. Its cultivation can encounter problems, resulting in poor growth and reduced yield. Plant microbiota has shown an ability to increase growth and resistance. However, in the development of effective microbiota manipulation strategies, it is essential to know the effect of environmental variables on microbiota composition and function. Here, we aimed to identify the differential impact of the site of cultivation and plant growth stage on potato rhizosphere microbiota. We performed a 16S rRNA gene amplicon sequencing analysis of rhizospheric soil collected from potato plants grown at four sites in central Italy during two phenological stages. Rhizomicrobiota was mainly composed of members of phyla Acidobacteriota, Actinobacteriota, Chloroflexi, and Proteobacteria and was affected by both the site of cultivation and the plant stages. However, cultivation sites overcome the effect of plant phenological stages. The PiCRUST analysis suggested a high abundance of functions related to the biosynthesis of the siderophore enterobactin. The presence of site-specific taxa and functional profiling of the microbiota could be further exploited in long-term studies to evaluate the possibility of developing biomarkers for traceability of the products and to exploit plant growth-promoting abilities in the native potato microbiota.
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Semenzato G, Alonso-Vásquez T, Del Duca S, Vassallo A, Riccardi C, Zaccaroni M, Mucci N, Padula A, Emiliani G, Palumbo Piccionello A, Puglia AM, Fani R. Genomic Analysis of Endophytic Bacillus-Related Strains Isolated from the Medicinal Plant Origanum vulgare L. Revealed the Presence of Metabolic Pathways Involved in the Biosynthesis of Bioactive Compounds. Microorganisms 2022; 10:microorganisms10050919. [PMID: 35630363 PMCID: PMC9145963 DOI: 10.3390/microorganisms10050919] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 04/20/2022] [Accepted: 04/25/2022] [Indexed: 12/26/2022] Open
Abstract
Multidrug-resistant pathogens represent a serious threat to human health. The inefficacy of traditional antibiotic drugs could be surmounted through the exploitation of natural bioactive compounds of which medicinal plants are a great reservoir. The finding that bacteria living inside plant tissues, (i.e., the endophytic bacterial microbiome) can influence the synthesis of the aforementioned compounds leads to the necessity of unraveling the mechanisms involved in the determination of this symbiotic relationship. Here, we report the genome sequence of four endophytic bacterial strains isolated from the medicinal plant Origanum vulgare L. and able to antagonize the growth of opportunistic pathogens of cystic fibrosis patients. The in silico analysis revealed the presence of gene clusters involved in the production of antimicrobial compounds, such as paeninodin, paenilarvins, polymyxin, and paenicidin A. Endophytes’ adaptation to the plant microenvironment was evaluated through the analysis of the presence of antibiotic resistance genes in the four genomes. The diesel fuel degrading potential was also tested. Strains grew in minimum media supplemented with diesel fuel, but no n-alkanes degradation genes were found in their genomes, suggesting that diesel fuel degradation might occur through other steps involving enzymes catalyzing the oxidation of aromatic compounds.
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Affiliation(s)
- Giulia Semenzato
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy; (G.S.); (T.A.-V.); (S.D.D.); (A.V.); (C.R.); (M.Z.)
| | - Tania Alonso-Vásquez
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy; (G.S.); (T.A.-V.); (S.D.D.); (A.V.); (C.R.); (M.Z.)
| | - Sara Del Duca
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy; (G.S.); (T.A.-V.); (S.D.D.); (A.V.); (C.R.); (M.Z.)
| | - Alberto Vassallo
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy; (G.S.); (T.A.-V.); (S.D.D.); (A.V.); (C.R.); (M.Z.)
| | - Christopher Riccardi
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy; (G.S.); (T.A.-V.); (S.D.D.); (A.V.); (C.R.); (M.Z.)
| | - Marco Zaccaroni
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy; (G.S.); (T.A.-V.); (S.D.D.); (A.V.); (C.R.); (M.Z.)
| | - Nadia Mucci
- Institute for Environmental Protection and Research, Via Ca’ Fornacetta 9, Ozzano dell’Emilia, 40064 Bologna, Italy; (N.M.); (A.P.)
| | - Anna Padula
- Institute for Environmental Protection and Research, Via Ca’ Fornacetta 9, Ozzano dell’Emilia, 40064 Bologna, Italy; (N.M.); (A.P.)
| | - Giovanni Emiliani
- Institute for Sustainable Plant Protection (IPSP), National Research Council (CNR), Via Madonna del Piano 10, Sesto Fiorentino, 50019 Florence, Italy;
| | - Antonio Palumbo Piccionello
- Department of Biological, Chemical and Pharmaceutical Sciences and Technologies-STEBICEF, University of Palermo, Viale delle Scienze Ed.17, 90128 Palermo, Italy; (A.P.P.); (A.M.P.)
| | - Anna Maria Puglia
- Department of Biological, Chemical and Pharmaceutical Sciences and Technologies-STEBICEF, University of Palermo, Viale delle Scienze Ed.17, 90128 Palermo, Italy; (A.P.P.); (A.M.P.)
| | - Renato Fani
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy; (G.S.); (T.A.-V.); (S.D.D.); (A.V.); (C.R.); (M.Z.)
- Correspondence: ; Tel.: +39-0554574742
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Differential Response of Wheat Rhizosphere Bacterial Community to Plant Variety and Fertilization. Int J Mol Sci 2022; 23:ijms23073616. [PMID: 35408978 PMCID: PMC8998456 DOI: 10.3390/ijms23073616] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Revised: 03/17/2022] [Accepted: 03/23/2022] [Indexed: 02/01/2023] Open
Abstract
The taxonomic assemblage and functions of the plant bacterial community are strongly influenced by soil and host plant genotype. Crop breeding, especially after the massive use of nitrogen fertilizers which led to varieties responding better to nitrogen fertilization, has implicitly modified the ability of the plant root to recruit an effective bacterial community. Among the priorities for harnessing the plant bacterial community, plant genotype-by-microbiome interactions are stirring attention. Here, we analyzed the effect of plant variety and fertilization on the rhizosphere bacterial community. In particular, we clarified the presence in the bacterial community of a varietal effect of N and P fertilization treatment. 16S rRNA gene amplicon sequence analysis of rhizospheric soil, collected from four wheat varieties grown under four N-P fertilization regimes, and quantification of functional bacterial genes involved in the nitrogen cycle (nifH; amoA; nirK and nosZ) were performed. Results showed that variety played the most important role and that treatments did not affect either bacterial community diversity or bacterial phyla abundance. Variety-specific response of rhizosphere bacterial community was detected, both in relation to taxa (Nitrospira) and metabolic functions. In particular, the changes related to amino acid and aerobic metabolism and abundance of genes involved in the nitrogen cycle (amoA and nosZ), suggested that plant variety may lead to functional changes in the cycling of the plant-assimilable nitrogen.
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Sun H, Gao H, Zuo X, Kai G. Transcriptome response of cold-pretreated Pantoea agglomerans KSC03 to exogenous green leaf volatile E-2-hexenal. CHEMOECOLOGY 2022. [DOI: 10.1007/s00049-021-00367-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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9
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Rosenberg E, Zilber-Rosenberg I. Reconstitution and Transmission of Gut Microbiomes and Their Genes between Generations. Microorganisms 2021; 10:microorganisms10010070. [PMID: 35056519 PMCID: PMC8780831 DOI: 10.3390/microorganisms10010070] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 12/26/2021] [Accepted: 12/28/2021] [Indexed: 12/13/2022] Open
Abstract
Microbiomes are transmitted between generations by a variety of different vertical and/or horizontal modes, including vegetative reproduction (vertical), via female germ cells (vertical), coprophagy and regurgitation (vertical and horizontal), physical contact starting at birth (vertical and horizontal), breast-feeding (vertical), and via the environment (horizontal). Analyses of vertical transmission can result in false negatives (failure to detect rare microbes) and false positives (strain variants). In humans, offspring receive most of their initial gut microbiota vertically from mothers during birth, via breast-feeding and close contact. Horizontal transmission is common in marine organisms and involves selectivity in determining which environmental microbes can colonize the organism's microbiome. The following arguments are put forth concerning accurate microbial transmission: First, the transmission may be of functions, not necessarily of species; second, horizontal transmission may be as accurate as vertical transmission; third, detection techniques may fail to detect rare microbes; lastly, microbiomes develop and reach maturity with their hosts. In spite of the great variation in means of transmission discussed in this paper, microbiomes and their functions are transferred from one generation of holobionts to the next with fidelity. This provides a strong basis for each holobiont to be considered a unique biological entity and a level of selection in evolution, largely maintaining the uniqueness of the entity and conserving the species from one generation to the next.
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10
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Minerdi D, Maggini V, Fani R. Volatile organic compounds: from figurants to leading actors in fungal symbiosis. FEMS Microbiol Ecol 2021; 97:6261439. [PMID: 33983430 DOI: 10.1093/femsec/fiab067] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Accepted: 04/29/2021] [Indexed: 12/13/2022] Open
Abstract
Symbiosis involving two (or more) prokaryotic and/or eukaryotic partners is extremely widespread in nature, and it has performed, and is still performing, a key role in the evolution of several biological systems. The interaction between symbiotic partners is based on the emission and perception of a plethora of molecules, including volatile organic compounds (VOCs), synthesized by both prokaryotic and eukaryotic (micro)organisms. VOCs acquire increasing importance since they spread above and below ground and act as infochemicals regulating a very complex network. In this work we review what is known about the VOCs synthesized by fungi prior to and during the interaction(s) with their partners (either prokaryotic or eukaryotic) and their possible role(s) in establishing and maintaining the symbiosis. Lastly, we also describe the potential applications of fungal VOCs from different biotechnological perspectives, including medicinal, pharmaceutical and agronomical.
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Affiliation(s)
- Daniela Minerdi
- Department of Department of Agricultural, Forestry, and Food Sciences, University of Turin, Largo Paolo Braccini 2, Grugliasco (TO), Italy
| | - Valentina Maggini
- Department of Biology, Laboratory of Microbial and Molecular Evolution, University of Florence, Via Madonna del Piano 6, Sesto F.no (FI), Italy
| | - Renato Fani
- Department of Biology, Laboratory of Microbial and Molecular Evolution, University of Florence, Via Madonna del Piano 6, Sesto F.no (FI), Italy
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Effects of Vermicompost Leachate versus Inorganic Fertilizer on Morphology and Microbial Traits in the Early Development Growth Stage in Mint (Mentha spicata L.) And Rosemary (Rosmarinus officinalis L.) Plants under Closed Hydroponic System. HORTICULTURAE 2021. [DOI: 10.3390/horticulturae7050100] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
The objective of this study was to compare the morphology of M. spicata and R. officinalis plants, and the relative abundance quantification, colony-forming units, ribotypes, and biofilm former bacteria under an inorganic fertilizer and the use of vermicompost leachate in the rhizosphere under a closed hydroponic system. In mint (Mentha spicata) plants treated with the vermicompost leachate, growth increase was determined mainly in root length from an average of 38 cm in plants under inorganic fertilizer to 74 cm under vermicompost leachate. In rosemary (Rosmarinus officinalis), no changes were determined between the two treatments. There were differences in the compositions of microbial communities: For R. officinalis, eight ribotypes were identified, seven for inorganic fertilizer and four for vermicompost leachate. For M. spicata, eight ribotypes were identified, three of them exclusive to vermicompost leachate. However, no changes were observed in microbial communities between the two treatments. Otherwise, some changes were observed in the compositions of these communities over time. In both cases, the main found phylum was Firmicutes, with 60% for R. officinalis and 80% for M. spicata represented by the Bacillus genus. In conclusion, the use of vermicompost leachate under the hydroponic system is a viable alternative to achieve an increase in the production of M. spicata, and for both plants (mint and rosemary), the quality of the product and the microbial communities that inhabited them remained unaltered.
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Delfino V, Calonico C, Nostro AL, Castronovo LM, Duca SD, Chioccioli S, Coppini E, Fibbi D, Vassallo A, Fani R. Antibacterial activity of bacteria isolated from Phragmites australis against multidrug-resistant human pathogens. Future Microbiol 2021; 16:291-303. [PMID: 33709774 DOI: 10.2217/fmb-2020-0244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Background: Rising number of multidrug-resistant human pathogens demands novel antibiotics: to this aim, unexplored natural sources are investigated to find new compounds. In this context, bacteria associated to medicinal plants, including Phragmites australis, might represent an important source of antimicrobial compounds. Materials & methods: In the present work, 21 bacterial endophytes isolated from P. australis roots were tested, by cross-streaking, for their inhibitory activity against 36 multidrug-resistant pathogens isolated from food, clinical patients and hospitals. Results & conclusion: Seven endophytes, belonging to Pseudomonas and Stenotrophomonas, were able to inhibit the growth of most of the target strains. In conclusion, this preliminary work could pave the way for the discovery of new antibiotics against superbugs.
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Affiliation(s)
- Vania Delfino
- Department of Health Sciences, University of Florence, Viale Pieraccini 6, Florence, 50139, Italy
| | - Carmela Calonico
- Department of Health Sciences, University of Florence, Viale Pieraccini 6, Florence, 50139, Italy
| | - Antonella Lo Nostro
- Department of Health Sciences, University of Florence, Viale Pieraccini 6, Florence, 50139, Italy
| | - Lara Mitia Castronovo
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019, Italy
| | - Sara Del Duca
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019, Italy
| | - Sofia Chioccioli
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019, Italy
| | - Ester Coppini
- G.I.D.A. SpA, Via Baciacavallo 36, Prato, 59100, Italy
| | | | - Alberto Vassallo
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019, Italy
| | - Renato Fani
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019, Italy
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Castronovo LM, Vassallo A, Mengoni A, Miceli E, Bogani P, Firenzuoli F, Fani R, Maggini V. Medicinal Plants and Their Bacterial Microbiota: A Review on Antimicrobial Compounds Production for Plant and Human Health. Pathogens 2021; 10:pathogens10020106. [PMID: 33498987 PMCID: PMC7911374 DOI: 10.3390/pathogens10020106] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Revised: 01/20/2021] [Accepted: 01/21/2021] [Indexed: 12/15/2022] Open
Abstract
Medicinal plants (MPs) have been used since antiquity in traditional and popular medicine, and they represent a very important source of bioactive molecules, including antibiotic, antiviral, and antifungal molecules. Such compounds are often of plant origin, but in some cases, an origin or a modification from plant microbiota has been shown. Actually, the research continues to report the production of bioactive molecules by plants, but the role of plant–endophytic interaction is emerging. Classic examples are mainly concerned with fungal endophytes; however, it has been recently shown that bacterial endophytes can also play an important role in influencing the plant metabolism related to the synthesis of bioactive compounds. In spite of this, a deep investigation on the power of MP bacterial endophytes is lacking. Here, an overview of the studies on MP bacterial microbiota and its role in the production of plant antimicrobial compounds contributing to prime host defense system and representing a huge resource for biotech and therapeutic applications is provided.
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Affiliation(s)
- Lara Mitia Castronovo
- Department of Biology, University of Florence, 50019 Florence, Italy; (L.M.C.); (A.V.); (A.M.); (E.M.); (P.B.)
| | - Alberto Vassallo
- Department of Biology, University of Florence, 50019 Florence, Italy; (L.M.C.); (A.V.); (A.M.); (E.M.); (P.B.)
| | - Alessio Mengoni
- Department of Biology, University of Florence, 50019 Florence, Italy; (L.M.C.); (A.V.); (A.M.); (E.M.); (P.B.)
| | - Elisangela Miceli
- Department of Biology, University of Florence, 50019 Florence, Italy; (L.M.C.); (A.V.); (A.M.); (E.M.); (P.B.)
| | - Patrizia Bogani
- Department of Biology, University of Florence, 50019 Florence, Italy; (L.M.C.); (A.V.); (A.M.); (E.M.); (P.B.)
| | - Fabio Firenzuoli
- CERFIT, Research and Innovation Center in Phytotherapy and Integrated Medicine, Tuscany Region, Careggi University Hospital, 50141 Florence, Italy;
| | - Renato Fani
- Department of Biology, University of Florence, 50019 Florence, Italy; (L.M.C.); (A.V.); (A.M.); (E.M.); (P.B.)
- Correspondence: (R.F.); (V.M.); Tel.: +39-0554574742 (R.F.); +39-0554574731 (V.M.)
| | - Valentina Maggini
- Department of Biology, University of Florence, 50019 Florence, Italy; (L.M.C.); (A.V.); (A.M.); (E.M.); (P.B.)
- CERFIT, Research and Innovation Center in Phytotherapy and Integrated Medicine, Tuscany Region, Careggi University Hospital, 50141 Florence, Italy;
- Correspondence: (R.F.); (V.M.); Tel.: +39-0554574742 (R.F.); +39-0554574731 (V.M.)
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14
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Given C, Häikiö E, Kumar M, Nissinen R. Tissue-Specific Dynamics in the Endophytic Bacterial Communities in Arctic Pioneer Plant Oxyria digyna. FRONTIERS IN PLANT SCIENCE 2020; 11:561. [PMID: 32528486 PMCID: PMC7247849 DOI: 10.3389/fpls.2020.00561] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Accepted: 04/15/2020] [Indexed: 06/11/2023]
Abstract
The rapid developments in the next-generation sequencing methods in the recent years have provided a wealth of information on the community structures and functions of endophytic bacteria. However, the assembly processes of these communities in different plant tissues are still currently poorly understood, especially in wild plants in natural settings. The aim of this study was to compare the composition of endophytic bacterial communities in leaves and roots of arcto-alpine pioneer plant Oxyria digyna, and investigate, how plant tissue (leaf or root) or plant origin affect the community assembly. To address this, we planted micropropagated O. digyna plants with low bacterial load (bait plants) in experimental site with native O. digyna population, in the Low Arctic. The endophytic bacterial community structures in the leaves and roots of the bait plants were analyzed after one growing season and one year in the field, and compared to those of the wild plants growing at the same site. 16S rRNA gene targeted sequencing revealed that endophytic communities in the roots were more diverse than in the leaves, and the diversity in the bait plants increased in the field, and was highest in the wild plants. Both tissue type and plant group had strong impact on the endophytic bacterial community structures. Firmicutes were highly abundant in the leaf communities of both plant types. Proteobacteria and Bacteroidetes were more abundant in the roots, albeit with different relative abundances in different plant groups. The community structures in the bait plants changed in the field over time, and increasingly resembled the wild plant endophytic communities. This was due to the changes in the relative abundances of several bacterial taxa, as well as species acquisition in the field, but with no species turnover. Several OTUs that were acquired by the bait plants in the field and represent phosphate solubilizing and diazotrophic bacterial taxa, suggesting major role in nutrient acquisition of these bacteria for this nonmycorrhizal plant, thriving in the nutrient poor arctic soils.
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Affiliation(s)
- Cindy Given
- Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland
| | - Elina Häikiö
- Department of Environmental and Biological Sciences, University of Eastern Finland, Kuopio, Finland
| | - Manoj Kumar
- Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland
| | - Riitta Nissinen
- Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland
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15
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Castronovo LM, Calonico C, Ascrizzi R, Del Duca S, Delfino V, Chioccioli S, Vassallo A, Strozza I, De Leo M, Biffi S, Bacci G, Bogani P, Maggini V, Mengoni A, Pistelli L, Lo Nostro A, Firenzuoli F, Fani R. The Cultivable Bacterial Microbiota Associated to the Medicinal Plant Origanum vulgare L.: From Antibiotic Resistance to Growth-Inhibitory Properties. Front Microbiol 2020; 11:862. [PMID: 32457726 PMCID: PMC7226918 DOI: 10.3389/fmicb.2020.00862] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Accepted: 04/09/2020] [Indexed: 12/14/2022] Open
Abstract
The insurgence of antibiotic resistance and emergence of multidrug-resistant (MDR) pathogens prioritize research to discover new antimicrobials. In this context, medicinal plants produce bioactive compounds of pharmacological interest: some extracts have antimicrobial properties that can contrast different pathogens. For such a purpose, Origanum vulgare L. (Lamiaceae family) is a medicinal aromatic plant, whose essential oil (EO) is recognized for its antiseptic, antimicrobial and antiviral activities. The cultivable bacteria from different compartments (i.e., flower, leaf, stem and soil) were isolated in order to: (i) characterize the bacterial microbiota associated to the plant, determining the forces responsible for the structuring of its composition (by evaluation of cross inhibition); (ii) investigate if bacterial endophytes demonstrate antimicrobial activities against human pathogens. A pool of plants belonging to O. vulgare species was collected and the specimen chemotype was defined by hydrodistillation of its essential oil. The isolation of plant associated bacteria was performed from the four compartments. Microbiota was further characterized through a culture-independent approach and next-generation sequencing analysis, as well. Isolates were molecularly typed by Random Amplified Polymorphic DNA (RAPD) profiling and taxonomically assigned by 16S rRNA gene sequencing. Antibiotic resistance profiles of isolates and pairwise cross-inhibition of isolates on agar plates (i.e., antagonistic interactions) were also assessed. High level of diversity of bacterial isolates was detected at both genus and strain level in all different compartments. Most strains were tolerant against common antibiotics; moreover, they produced antagonistic patterns of interactions mainly with strains from different compartments with respect to that of original isolation. Strains that exhibited high inhibitory properties were further tested against human pathogens, revealing a strong capacity to inhibit the growth of strains resistant to several antibiotics. In conclusion, this study regarded the characterization of O. vulgare L. chemotype and of the bacterial communities associated to this medicinal plant, also allowing the evaluation of antibiotic resistance and antagonistic interactions. This study provided the bases for further analyses on the possible involvement of endophytic bacteria in the production of antimicrobial molecules that could have an important role in clinical and therapeutic applications.
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Affiliation(s)
| | - Carmela Calonico
- Department of Health Sciences, University of Florence, Florence, Italy
| | | | - Sara Del Duca
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Vania Delfino
- Department of Health Sciences, University of Florence, Florence, Italy
| | - Sofia Chioccioli
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Alberto Vassallo
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Iolanda Strozza
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | | | | | - Giovanni Bacci
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Patrizia Bogani
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Valentina Maggini
- Department of Biology, University of Florence, Sesto Fiorentino, Italy.,Research and Innovation Center in Phytotherapy and Integrated Medicine - CERFIT Careggi University Hospital, Florence, Italy
| | - Alessio Mengoni
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | | | | | - Fabio Firenzuoli
- Research and Innovation Center in Phytotherapy and Integrated Medicine - CERFIT Careggi University Hospital, Florence, Italy
| | - Renato Fani
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
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16
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Stanisavljević N, Soković Bajić S, Jovanović Ž, Matić I, Tolinački M, Popović D, Popović N, Terzić-Vidojević A, Golić N, Beškoski V, Samardžić J. Antioxidant and Antiproliferative Activity of Allium ursinum and Their Associated Microbiota During Simulated in vitro Digestion in the Presence of Food Matrix. Front Microbiol 2020; 11:601616. [PMID: 33335521 PMCID: PMC7736176 DOI: 10.3389/fmicb.2020.601616] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Accepted: 11/09/2020] [Indexed: 12/29/2022] Open
Abstract
In this study, for the first time, the comprehensive analysis of antiproliferative and antioxidant activities of ramson, followed by the analysis of its associated microbiota and health-promoting effects of lactic acid bacteria (LAB), was performed. Ramson (Allium ursinum) is recognized as a medicinal plant with a long history of use in traditional medicine due to its antimicrobial and antioxidant activity. In this study the influence of in vitro gastrointestinal digestion on the cytotoxic activity of A. ursinum extracts against human malignant cell lines was demonstrated. Seven sulfur compounds, the degradation products of thiosulfinates, including diallyl disulfide were shown to inhibit proliferation of malignant cells by inducing accumulation within G2/M phase as well as to induce apoptosis through activation of caspase-3 and mitochondrial signaling pathway. Further, the A. ursinum microbiota, particularly LAB with potential probiotic effects, was analyzed by culture-dependent method and culture-independent method [denaturing gradient gel electrophoresis (DGGE)]. The obtained results revealed that the most abundant genera were Streptococcus, Lactobacillus, and Bacillus. The Lactobacillus genus was mainly represented by L. fermentum. The pulsed-field gel electrophoresis (PFGE) analysis revealed the presence of two PFGE pulsotypes. The probiotic potential of the strain L. fermentum BGSR163 belonging to PFGE pulsotype 1 and the strain L. fermentum BGSR227 belonging to the PFGE pulsotype 2 was characterized. The results revealed that both strains are safe for human use, successfully survive the simulated gastrointestinal conditions, have potential to transiently colonize the gastrointestinal tract (GIT) and have a protective immunomodulatory effect, inducing the production of proinflammatory cytokine IL17 and regulatory cytokine IL10, while decreasing the production of proinflammatory cytokine IFN-γ. In conclusion, the results of this study suggest that consumption of A. ursinum might have health-promoting properties, including anticancer effects, while L. fermentum strains isolated from A. ursinum leaves could be used as probiotics for human consumption.
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Affiliation(s)
- Nemanja Stanisavljević
- Laboratory for Molecular Microbiology, Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Belgrade, Serbia
- *Correspondence: Nemanja Stanisavljević,
| | - Svetlana Soković Bajić
- Laboratory for Molecular Microbiology, Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Belgrade, Serbia
| | - Živko Jovanović
- Faculty of Biology, University of Belgrade, Belgrade, Serbia
| | - Ivana Matić
- Institute of Oncology and Radiology of Serbia, Belgrade, Serbia
| | - Maja Tolinački
- Laboratory for Molecular Microbiology, Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Belgrade, Serbia
| | - Dušanka Popović
- Laboratory for Molecular Microbiology, Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Belgrade, Serbia
| | - Nikola Popović
- Laboratory for Molecular Microbiology, Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Belgrade, Serbia
| | - Amarela Terzić-Vidojević
- Laboratory for Molecular Microbiology, Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Belgrade, Serbia
| | - Nataša Golić
- Laboratory for Molecular Microbiology, Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Belgrade, Serbia
| | | | - Jelena Samardžić
- Laboratory for Plant Molecular Biology, Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Belgrade, Serbia
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17
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Maggini V, Mengoni A, Gallo ER, Biffi S, Fani R, Firenzuoli F, Bogani P. Tissue specificity and differential effects on in vitro plant growth of single bacterial endophytes isolated from the roots, leaves and rhizospheric soil of Echinacea purpurea. BMC PLANT BIOLOGY 2019; 19:284. [PMID: 31253081 PMCID: PMC6598257 DOI: 10.1186/s12870-019-1890-z] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2018] [Accepted: 06/18/2019] [Indexed: 05/05/2023]
Abstract
BACKGROUND Echinacea-endophyte interaction might affect plant secondary metabolites content and influence bacterial colonization specificity and plant growth, but the underlying mechanisms need deepening. An in vitro model, in which E. purpurea axenic plants as host species and E. angustifolia and Nicotiana tabacum as non-host species inoculated with single endophytes isolated from stem/leaf, root and rhizospheric soil, were used to investigate bacterial colonization. RESULTS Colonization analysis showed that bacteria tended to reach tissues from which they were originally isolated (tissue-specificity) in host plants but not in non-host ones (species-specificity). Primary root elongation inhibition as well as the promotion of the growth of E. purpurea and E. angustifolia plants were observed and related to endophyte-produced indole-3-Acetic Acid. Bacteria-secreted substances affected plant physiology probably interacting with plant regulators. Plant metabolites played an important role in controlling the endophyte growth. CONCLUSIONS The proposed in vitro infection model could be, generally used to identify novel bioactive compounds and/or to select specific endophytes contributing to the host metabolism properties.
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Affiliation(s)
- Valentina Maggini
- Department of Biology, Laboratory of Plant Genetics, University of Florence, Via Madonna del Piano 6, I-50019 Sesto Fiorentino (Florence), Italy
- Department of Experimental and Clinical Medicine, University of Florence, Florence, Italy
- Research and Innovation Center in Phytotherapy and Integrated Medicine - CERFIT Careggi University Hospital, Florence, Italy
| | - Alessio Mengoni
- Department of Biology, Laboratory of Plant Genetics, University of Florence, Via Madonna del Piano 6, I-50019 Sesto Fiorentino (Florence), Italy
| | - Eugenia Rosaria Gallo
- Department of Experimental and Clinical Medicine, University of Florence, Florence, Italy
- Research and Innovation Center in Phytotherapy and Integrated Medicine - CERFIT Careggi University Hospital, Florence, Italy
| | | | - Renato Fani
- Department of Biology, Laboratory of Plant Genetics, University of Florence, Via Madonna del Piano 6, I-50019 Sesto Fiorentino (Florence), Italy
| | - Fabio Firenzuoli
- Research and Innovation Center in Phytotherapy and Integrated Medicine - CERFIT Careggi University Hospital, Florence, Italy
| | - Patrizia Bogani
- Department of Biology, Laboratory of Plant Genetics, University of Florence, Via Madonna del Piano 6, I-50019 Sesto Fiorentino (Florence), Italy
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18
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Cinà P, Bacci G, Arancio W, Gallo G, Fani R, Puglia AM, Di Trapani D, Mannina G. Assessment and characterization of the bacterial community structure in advanced activated sludge systems. BIORESOURCE TECHNOLOGY 2019; 282:254-261. [PMID: 30870691 DOI: 10.1016/j.biortech.2019.03.018] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2019] [Revised: 03/02/2019] [Accepted: 03/04/2019] [Indexed: 06/09/2023]
Abstract
The present study is aimed to assess and characterize the structure of bacterial community in advanced activated sludge systems. In particular, activated sludge samples were collected from an Integrated Fixed-film Activated Sludge - Membrane Bioreactor pilot plant under a University of Cape Town configuration with in-series anaerobic (Noair)/anoxic (Anox)/aerobic (Oxy) reactors - and further analyzed. The achieved results - based on Next Generation Sequencing (NGS) of 16S rDNA amplicons - revealed that the bacterial biofilm (bf) communities on plastic carriers of Oxy and Anox reactors had a greater diversity compared to suspended (sp) bacterial flocs of Oxy, Anox and Noair. Indeed, the Shannon diversity indices of both biofilm communities were higher than those of suspended growth samples (Oxy-bf = 4.1 and Anox-bf = 4.2 vs. Oxy-sp = 3.4, Anox-sp = 3.5 and Noair-sp = 3.4). The most striking differences have been reported in Rhodobacteraceae being more abundant in biofilm specimens than in suspended biomass samples. The vast majority of the identified bacteria differs from those obtained by culture dependent method, thus suggesting that NGS-based method is really suitable to analyze the bacterial community composition, even in advanced systems for wastewater treatment.
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Affiliation(s)
- Paolo Cinà
- Dipartimento di Scienze e Tecnologie Biologiche Chimiche e Farmaceutiche, Università di Palermo, Viale delle Scienze, Ed. 16, 90100 Palermo, Italy
| | - Giovanni Bacci
- Dipartimento di Biologia, Università di Firenze, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Italy
| | - Walter Arancio
- Dipartimento di Scienze e Tecnologie Biologiche Chimiche e Farmaceutiche, Università di Palermo, Viale delle Scienze, Ed. 16, 90100 Palermo, Italy
| | - Giuseppe Gallo
- Dipartimento di Scienze e Tecnologie Biologiche Chimiche e Farmaceutiche, Università di Palermo, Viale delle Scienze, Ed. 16, 90100 Palermo, Italy
| | - Renato Fani
- Dipartimento di Biologia, Università di Firenze, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Italy
| | - Anna Maria Puglia
- Dipartimento di Scienze e Tecnologie Biologiche Chimiche e Farmaceutiche, Università di Palermo, Viale delle Scienze, Ed. 16, 90100 Palermo, Italy
| | - Daniele Di Trapani
- Dipartimento di Ingegneria, Università di Palermo, Viale delle Scienze, Ed. 8, 90100 Palermo, Italy
| | - Giorgio Mannina
- Dipartimento di Ingegneria, Università di Palermo, Viale delle Scienze, Ed. 8, 90100 Palermo, Italy.
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19
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Maggini V, Miceli E, Fagorzi C, Maida I, Fondi M, Perrin E, Mengoni A, Bogani P, Chiellini C, Mocali S, Fabiani A, Decorosi F, Giovannetti L, Firenzuoli F, Fani R. Antagonism and antibiotic resistance drive a species-specific plant microbiota differentiation in Echinacea spp. FEMS Microbiol Ecol 2019; 94:5037916. [PMID: 29912319 DOI: 10.1093/femsec/fiy118] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2018] [Accepted: 06/06/2018] [Indexed: 12/19/2022] Open
Abstract
A key factor in the study of plant-microbes interactions is the composition of plant microbiota, but little is known about the factors determining its functional and taxonomic organization. Here we investigated the possible forces driving the assemblage of bacterial endophytic and rhizospheric communities, isolated from two congeneric medicinal plants, Echinacea purpurea (L.) Moench and Echinacea angustifolia (DC) Heller, grown in the same soil, by analysing bacterial strains (isolated from three different compartments, i.e. rhizospheric soil, roots and stem/leaves) for phenotypic features such as antibiotic resistance, extracellular enzymatic activity, siderophore and indole 3-acetic acid production, as well as cross-antagonistic activities. Data obtained highlighted that bacteria from different plant compartments were characterized by specific antibiotic resistance phenotypes and antibiotic production, suggesting that the bacterial communities themselves could be responsible for structuring their own communities by the production of antimicrobial molecules selecting bacterial-adaptive phenotypes for plant tissue colonization.
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Affiliation(s)
- Valentina Maggini
- Dept. of Biology, University of Florence, Via Madonna del Piano 6, I-50019 Sesto Fiorentino (Florence), Italy.,Center for Integrative Medicine, Careggi University Hospital, Dept. of Experimental and Clinical Medicine, University of Florence, Florence, Italy
| | - Elisangela Miceli
- Dept. of Biology, University of Florence, Via Madonna del Piano 6, I-50019 Sesto Fiorentino (Florence), Italy
| | - Camilla Fagorzi
- Dept. of Biology, University of Florence, Via Madonna del Piano 6, I-50019 Sesto Fiorentino (Florence), Italy
| | - Isabel Maida
- Dept. of Biology, University of Florence, Via Madonna del Piano 6, I-50019 Sesto Fiorentino (Florence), Italy
| | - Marco Fondi
- Dept. of Biology, University of Florence, Via Madonna del Piano 6, I-50019 Sesto Fiorentino (Florence), Italy
| | - Elena Perrin
- Dept. of Biology, University of Florence, Via Madonna del Piano 6, I-50019 Sesto Fiorentino (Florence), Italy
| | - Alessio Mengoni
- Dept. of Biology, University of Florence, Via Madonna del Piano 6, I-50019 Sesto Fiorentino (Florence), Italy
| | - Patrizia Bogani
- Dept. of Biology, University of Florence, Via Madonna del Piano 6, I-50019 Sesto Fiorentino (Florence), Italy
| | - Carolina Chiellini
- Dept. of Biology, University of Florence, Via Madonna del Piano 6, I-50019 Sesto Fiorentino (Florence), Italy
| | - Stefano Mocali
- Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria, Centro di ricerca Agricoltura e Ambiente (CREA-AA), via di Lanciola 12/A, 50125 Cascine del Riccio (Florence), Italy
| | - Arturo Fabiani
- Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria, Centro di ricerca Agricoltura e Ambiente (CREA-AA), via di Lanciola 12/A, 50125 Cascine del Riccio (Florence), Italy
| | - Francesca Decorosi
- Department of Agri-food Production and Environmental Science, University of Florence, Florence, Italy
| | - Luciana Giovannetti
- Department of Agri-food Production and Environmental Science, University of Florence, Florence, Italy
| | - Fabio Firenzuoli
- Center for Integrative Medicine, Careggi University Hospital, Dept. of Experimental and Clinical Medicine, University of Florence, Florence, Italy
| | - Renato Fani
- Dept. of Biology, University of Florence, Via Madonna del Piano 6, I-50019 Sesto Fiorentino (Florence), Italy
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20
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Dong L, Cheng R, Xiao L, Wei F, Wei G, Xu J, Wang Y, Guo X, Chen Z, Chen S. Diversity and composition of bacterial endophytes among plant parts of Panax notoginseng. Chin Med 2018; 13:41. [PMID: 30127840 PMCID: PMC6092820 DOI: 10.1186/s13020-018-0198-5] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2018] [Accepted: 07/26/2018] [Indexed: 11/10/2022] Open
Abstract
Background Bacterial endophytes are widespread inhabitants inside plant tissues that play crucial roles in plant growth and biotransformation. This study aimed to offer information for the exploitation of endophytes by analyzing the bacterial endophytes in different parts of Panax notoginseng. Methods We used high-throughput sequencing methods to analyze the diversity and composition of bacterial endophytes from different parts of P. notoginseng. Results A total of 174,761 classified sequences were obtained from the analysis of 16S ribosomal RNA in different parts of P. notoginseng. Its fibril displayed the highest diversity of bacterial endophytes. Principal coordinate analysis revealed that the compositions of the bacterial endophytes from aboveground parts (flower, leaf, and stem) differed from that of underground parts (root and fibril). The abundances of Conexibacter, Gemmatimonas, Holophaga, Luteolibacter, Methylophilus, Prosthecobacter, and Solirubrobacter were significantly higher in the aboveground parts than in the underground parts, whereas the abundances of Bradyrhizobium, Novosphingobium, Phenylobacterium, Sphingobium, and Steroidobacter were markedly lower in the aboveground parts. Conclusions Our results elucidated the comprehensive diversity and composition profiles of bacterial endophytes in different parts of 3-year-old P. notoginseng. Our data offered pivotal information to clarify the role of endophytes in the production of P. notoginseng and its important metabolites.
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Affiliation(s)
- Linlin Dong
- 1Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, 100700 China
| | - Ruiyang Cheng
- 1Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, 100700 China
| | - Lina Xiao
- 1Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, 100700 China
| | - Fugang Wei
- Wenshan Miaoxaing Notoginseng Technology, Co., Ltd., Wenshan, 663000 China
| | - Guangfei Wei
- 1Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, 100700 China
| | - Jiang Xu
- 1Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, 100700 China
| | - Yong Wang
- 3Institute of Sanqi Research, Wenshan University, Wenshan, 663000 China
| | - Xiaotong Guo
- 4College of Agriculture, Ludong University, Yantai, 264025 China
| | - Zhongjian Chen
- 3Institute of Sanqi Research, Wenshan University, Wenshan, 663000 China
| | - Shilin Chen
- 1Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, 100700 China
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21
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Pontonio E, Di Cagno R, Tarraf W, Filannino P, De Mastro G, Gobbetti M. Dynamic and Assembly of Epiphyte and Endophyte Lactic Acid Bacteria During the Life Cycle of Origanum vulgare L. Front Microbiol 2018; 9:1372. [PMID: 29997592 PMCID: PMC6029521 DOI: 10.3389/fmicb.2018.01372] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2018] [Accepted: 06/06/2018] [Indexed: 12/02/2022] Open
Abstract
Origanum vulgare L. (oregano) was chosen as suitable model to investigate the ability of the endophyte-microbiome, especially that of lactic acid bacteria, to develop specific interactions with the plant, mediated by the essential oils (EOs). Combined culture-dependent and -independent approaches analyzed the bacterial dynamic and assembly of Origanum vulgare L. throughout the life cycle. Epiphyte bacteria were more abundant than the endophyte ones. The number of presumptive lactic acid bacteria increased throughout oregano life cycle, according to the plant organ. Diverse species of lactic acid bacteria populated the plant, but Lactobacillus plantarum stably dominated both epiphyte and endophyte populations. High-throughput DNA sequencing showed highest epiphyte bacterial diversity at early vegetative and full-flowering stages, with blooming signing the main microbial differentiation among plant organs. Proteobacteria, Actinobacteria and Bacteroidetes, and Firmicutes and Cyanobacteria at lower abundance were the main phyla. Various genera were detectable, but oregano harbored mainly Methylobacterium, Sphingomonas, Rhizobium and Aurantimonas throughout phenological stages. Firmicutes epiphyte and endophyte microbiotas were different, with a core microbiota consisting of Bacillus, Exiguobacterium, Streptococcus, Staphylococcus and Lactobacillus genera. Bacillus dominated throughout phenological stages. High-throughput DNA sequencing confirmed the dominance of L. plantarum within the epiphyte and endophyte populations of lactic acid bacteria. Yields of EOs varied among plant organs and throughout plant life cycle. L. plantarum strains were the most resistant to the total EOs (mainly thymol and carvacrol) as extracted from the plant. The positive correlation among endophyte lactic acid bacteria and the EOs content seems confirm the hypothesis that the colonization within plant niches may be regulated by mechanisms linked to the synthesis of the secondary metabolites.
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Affiliation(s)
- Erica Pontonio
- Department of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Bari, Italy
| | - Raffaella Di Cagno
- Faculty of Science and Technology, Libera Università di Bolzano, Bolzano, Italy
| | - Waed Tarraf
- Department of Agricultural and Environmental Sciences, University of Bari Aldo Moro, Bari, Italy
| | - Pasquale Filannino
- Department of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Bari, Italy
| | - Giuseppe De Mastro
- Department of Agricultural and Environmental Sciences, University of Bari Aldo Moro, Bari, Italy
| | - Marco Gobbetti
- Faculty of Science and Technology, Libera Università di Bolzano, Bolzano, Italy
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